Satb2 (SATB homeobox 2) - Rat Genome Database

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Gene: Satb2 (SATB homeobox 2) Rattus norvegicus
Analyze
Symbol: Satb2
Name: SATB homeobox 2
RGD ID: 1562369
Description: Enables histone deacetylase binding activity. Predicted to be involved in chromatin remodeling and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including osteoblast development; regulation of transcription by RNA polymerase II; and skeletal system development. Predicted to be located in nucleoplasm. Predicted to be part of histone deacetylase complex and transcription regulator complex. Human ortholog(s) of this gene implicated in SATB2-associated syndrome. Orthologous to human SATB2 (SATB homeobox 2); INTERACTS WITH 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine; 3-chloropropane-1,2-diol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: DNA-binding protein SATB2; LOC501145; RGD1562369; similar to KIAA1034-like DNA binding protein; special AT-rich sequence binding protein 2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2958,348,027 - 58,534,256 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl958,350,246 - 58,530,707 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx966,851,232 - 67,028,002 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0971,967,156 - 72,143,935 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0970,285,214 - 70,461,986 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0963,456,877 - 63,642,193 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl963,456,783 - 63,641,400 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0963,262,569 - 63,445,219 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4955,647,221 - 55,824,683 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera955,813,347 - 55,988,972 (-)NCBICelera
Cytogenetic Map9q31NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3,4-methylenedioxymethamphetamine  (ISO)
3-chloropropane-1,2-diol  (EXP)
5-aza-2'-deoxycytidine  (ISO)
6-propyl-2-thiouracil  (EXP,ISO)
acetamide  (EXP)
acrylamide  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
amosite asbestos  (ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
benzatropine  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bis(2-ethylhexyl) phthalate  (EXP,ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
butanal  (ISO)
C60 fullerene  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
carbamazepine  (ISO)
CGP 52608  (ISO)
chromium atom  (ISO)
cisplatin  (ISO)
clozapine  (ISO)
cocaine  (ISO)
coumestrol  (ISO)
crocidolite asbestos  (ISO)
Cuprizon  (EXP,ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
dibutyl phthalate  (EXP)
dicrotophos  (ISO)
diiodine  (ISO)
dorsomorphin  (ISO)
endosulfan  (ISO)
folic acid  (ISO)
formaldehyde  (ISO)
glycerol 2-phosphate  (ISO)
GW 4064  (ISO)
haloperidol  (ISO)
hypochlorous acid  (ISO)
ketamine  (EXP)
L-ascorbic acid  (ISO)
lead(0)  (ISO)
mercury dibromide  (ISO)
methoxychlor  (EXP)
methylisothiazolinone  (ISO)
mitoxantrone  (ISO)
nickel atom  (ISO)
nickel sulfate  (ISO)
p-chloromercuribenzoic acid  (ISO)
paracetamol  (ISO)
PCB138  (ISO)
potassium chromate  (ISO)
quercetin  (ISO)
SB 431542  (ISO)
serpentine asbestos  (ISO)
sodium arsenite  (ISO)
sodium dodecyl sulfate  (ISO)
sunitinib  (ISO)
temozolomide  (ISO)
trichostatin A  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)

References

References - curated
# Reference Title Reference Citation
1. Satb2 is a postmitotic determinant for upper-layer neuron specification in the neocortex. Britanova O, etal., Neuron. 2008 Feb 7;57(3):378-92. doi: 10.1016/j.neuron.2007.12.028.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:15733084   PMID:16751105   PMID:16960803   PMID:18794345   PMID:21123581   PMID:23144223   PMID:23517179   PMID:25239161   PMID:27503378   PMID:29030963   PMID:31378877   PMID:31908011  
PMID:32329823  


Genomics

Comparative Map Data
Satb2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2958,348,027 - 58,534,256 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl958,350,246 - 58,530,707 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx966,851,232 - 67,028,002 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0971,967,156 - 72,143,935 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0970,285,214 - 70,461,986 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0963,456,877 - 63,642,193 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl963,456,783 - 63,641,400 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0963,262,569 - 63,445,219 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4955,647,221 - 55,824,683 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera955,813,347 - 55,988,972 (-)NCBICelera
Cytogenetic Map9q31NCBI
SATB2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382199,269,500 - 199,471,266 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2199,269,505 - 199,471,266 (-)EnsemblGRCh38hg38GRCh38
GRCh372200,134,223 - 200,335,989 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362199,842,469 - 200,033,446 (-)NCBINCBI36Build 36hg18NCBI36
Build 342199,959,729 - 200,150,707NCBI
Celera2193,889,754 - 194,091,258 (-)NCBICelera
Cytogenetic Map2q33.1NCBI
HuRef2191,986,953 - 192,188,680 (-)NCBIHuRef
CHM1_12200,140,433 - 200,341,932 (-)NCBICHM1_1
T2T-CHM13v2.02199,753,552 - 199,955,035 (-)NCBIT2T-CHM13v2.0
Satb2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39156,833,145 - 57,019,350 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl156,833,140 - 57,017,809 (-)EnsemblGRCm39 Ensembl
GRCm38156,793,981 - 56,981,190 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl156,793,981 - 56,978,650 (-)EnsemblGRCm38mm10GRCm38
MGSCv37156,850,825 - 57,028,178 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36156,740,812 - 56,915,879 (-)NCBIMGSCv36mm8
Celera157,309,396 - 57,486,902 (-)NCBICelera
Cytogenetic Map1C1.3NCBI
cM Map128.72NCBI
Satb2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554031,663,676 - 1,811,109 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554031,663,676 - 1,811,088 (+)NCBIChiLan1.0ChiLan1.0
SATB2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan12B101,902,495 - 102,098,402 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B86,518,043 - 86,720,212 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B204,408,681 - 204,603,286 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B204,406,887 - 204,599,539 (-)Ensemblpanpan1.1panPan2
SATB2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1378,548,295 - 8,837,416 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl378,551,017 - 8,731,149 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha379,435,262 - 9,724,366 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0378,446,518 - 8,736,073 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl378,446,544 - 8,629,216 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1378,437,231 - 8,726,605 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0378,409,230 - 8,698,299 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0378,428,358 - 8,717,903 (-)NCBIUU_Cfam_GSD_1.0
Satb2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303156,631,640 - 156,803,110 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493650634,962 - 206,490 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493650634,968 - 206,432 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SATB2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15102,964,417 - 103,158,232 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115102,962,635 - 103,172,224 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215114,023,917 - 114,065,366 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SATB2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11084,761,450 - 84,954,339 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1084,761,426 - 84,954,361 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040114,497,881 - 114,689,237 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Satb2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248891,321,345 - 1,466,319 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248891,321,323 - 1,466,368 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Satb2
519 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:249
Count of miRNA genes:164
Interacting mature miRNAs:187
Transcripts:ENSRNOT00000049259
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10054125Srcrt7Stress Responsive Cort QTL 73.330.0011blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)9187073594Rat
1331757Cdexp1CD45RC expression in CD8 T cells QTL 14.3CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)9102453767509080Rat
631680Cm11Cardiac mass QTL 113.10.00089heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)92043051965430519Rat
70186Niddm26Non-insulin dependent diabetes mellitus QTL 263.87blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)92207116986369743Rat
631643Bp120Blood pressure QTL 12030.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)92207120067071200Rat
1300180Bw14Body weight QTL 143.776body mass (VT:0001259)body weight (CMO:0000012)92375402461381613Rat
7207814Bmd91Bone mineral density QTL 913.5femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)92375414483851531Rat
70218Cm28Cardiac mass QTL 288.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)92526804479271759Rat
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)925268044114175309Rat
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)925661188100929786Rat
1641894Alcrsp12Alcohol response QTL 12response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)92746863972468639Rat
7411656Foco26Food consumption QTL 269.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)93253550577535505Rat
7411571Bw138Body weight QTL 13814.30.001body mass (VT:0001259)body weight gain (CMO:0000420)93253550577535505Rat
1598834Memor11Memory QTL 112.5exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)93696235977814038Rat
8662828Vetf6Vascular elastic tissue fragility QTL 63.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)93696235992058970Rat
2290450Scl57Serum cholesterol level QTL 574.15blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)93696235995410867Rat
6903941Pur31Proteinuria QTL 310.036urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)94019418885194188Rat
11353949Bp393Blood pressure QTL 393arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94019418885194188Rat
61352Bp34Blood pressure QTL 345arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94249534379271511Rat
10058949Gmadr5Adrenal mass QTL 520.014adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)94279151387976209Rat
11353951Bp394Blood pressure QTL 394arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94464992189649921Rat
12879506Pur33Proteinuria QTL 33urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)94464992189649921Rat
11353957Bmd92Bone mineral density QTL 920.01tibia mineral mass (VT:1000283)volumetric bone mineral density (CMO:0001553)94611419991114199Rat
631656Bp108Blood pressure QTL 1085.970.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94859825193598251Rat
1598849Memor17Memory QTL 172.2exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)94996854671098346Rat
2303170Bp332Blood pressure QTL 3323.730.027arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)95584784177026453Rat
2303180Bp333Blood pressure QTL 3330.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)95662771378595166Rat
2303180Bp333Blood pressure QTL 3330.001arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)95662771378595166Rat
2303180Bp333Blood pressure QTL 3330.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)95662771378595166Rat
1578760Cm53Cardiac mass QTL 533.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)956771635101771635Rat
724515Uae16Urinary albumin excretion QTL 168urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)958163035100929646Rat

Markers in Region
RH140688  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2958,528,367 - 58,528,583 (+)MAPPERmRatBN7.2
Rnor_6.0963,639,119 - 63,639,334NCBIRnor6.0
Rnor_5.0963,442,948 - 63,443,163UniSTSRnor5.0
RGSC_v3.4955,827,474 - 55,827,689UniSTSRGSC3.4
RGSC_v3.4955,826,413 - 55,826,628UniSTSRGSC3.4
Celera955,990,414 - 55,990,629UniSTS
RH 3.4 Map9481.2UniSTS
Cytogenetic Map9q31UniSTS
RH80503  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2958,350,121 - 58,350,357 (+)MAPPERmRatBN7.2
Rnor_6.0963,458,971 - 63,459,206NCBIRnor6.0
Rnor_5.0963,264,663 - 63,264,898UniSTSRnor5.0
RGSC_v3.4955,647,097 - 55,647,332UniSTSRGSC3.4
Celera955,813,223 - 55,813,458UniSTS
Cytogenetic Map9q31UniSTS
RH143932  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2958,527,362 - 58,527,485 (+)MAPPERmRatBN7.2
Rnor_6.0963,638,114 - 63,638,236NCBIRnor6.0
Rnor_5.0963,441,943 - 63,442,065UniSTSRnor5.0
RGSC_v3.4955,825,120 - 55,825,242UniSTSRGSC3.4
Celera955,989,409 - 55,989,531UniSTS
RH 3.4 Map9481.3UniSTS
Cytogenetic Map9q31UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 30 6
Low 1 2 23 22 1 22 40 29 31
Below cutoff 39 32 19 14 19 8 11 4 10 11 8

Sequence


RefSeq Acc Id: ENSRNOT00000049259   ⟹   ENSRNOP00000044829
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl958,350,246 - 58,526,925 (-)Ensembl
Rnor_6.0 Ensembl963,459,095 - 63,637,677 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000087684   ⟹   ENSRNOP00000071049
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl958,350,246 - 58,525,420 (-)Ensembl
Rnor_6.0 Ensembl963,456,783 - 63,641,400 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000107325   ⟹   ENSRNOP00000087808
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl958,350,246 - 58,530,707 (-)Ensembl
RefSeq Acc Id: NM_001109306   ⟹   NP_001102776
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2958,350,246 - 58,526,925 (-)NCBI
Rnor_6.0963,459,095 - 63,637,677 (-)NCBI
Rnor_5.0963,262,569 - 63,445,219 (-)NCBI
RGSC_v3.4955,647,221 - 55,824,683 (-)RGD
Celera955,813,347 - 55,988,972 (-)RGD
Sequence:
RefSeq Acc Id: XM_008767129   ⟹   XP_008765351
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2958,348,027 - 58,526,928 (-)NCBI
Rnor_6.0963,456,877 - 63,637,674 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596603   ⟹   XP_017452092
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2958,348,027 - 58,534,256 (-)NCBI
Rnor_6.0963,456,877 - 63,642,193 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039084088   ⟹   XP_038940016
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2958,348,027 - 58,533,284 (-)NCBI
RefSeq Acc Id: NP_001102776   ⟸   NM_001109306
- UniProtKB: A6IP31 (UniProtKB/TrEMBL),   A0A0G2JZH5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008765351   ⟸   XM_008767129
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AHD9 (UniProtKB/TrEMBL),   A0A0G2JZH5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017452092   ⟸   XM_017596603
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AHD9 (UniProtKB/TrEMBL),   A0A0G2JZH5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000071049   ⟸   ENSRNOT00000087684
RefSeq Acc Id: ENSRNOP00000044829   ⟸   ENSRNOT00000049259
RefSeq Acc Id: XP_038940016   ⟸   XM_039084088
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AHD9 (UniProtKB/TrEMBL),   A0A0G2JZH5 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000087808   ⟸   ENSRNOT00000107325
Protein Domains
CUT   CUTL   Homeobox   ULD

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZJ19-F1-model_v2 AlphaFold D3ZJ19 1-733 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1562369 AgrOrtholog
BioCyc Gene G2FUF-27502 BioCyc
Ensembl Genes ENSRNOG00000010188 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000049259.3 UniProtKB/TrEMBL
  ENSRNOT00000087684 ENTREZGENE
  ENSRNOT00000087684.2 UniProtKB/TrEMBL
  ENSRNOT00000107325 ENTREZGENE
  ENSRNOT00000107325.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.260.40 UniProtKB/TrEMBL
  1.10.260.70 UniProtKB/TrEMBL
  3.10.20.710 UniProtKB/TrEMBL
  Homeodomain-like UniProtKB/TrEMBL
InterPro CUTL UniProtKB/TrEMBL
  Hmoeo_CUT UniProtKB/TrEMBL
  Homeobox UniProtKB/TrEMBL
  Homeodomain-like UniProtKB/TrEMBL
  Lambda_DNA-bd UniProtKB/TrEMBL
  SATB1/SATB2 UniProtKB/TrEMBL
  SATB_CUTL_sf UniProtKB/TrEMBL
  SATB_ULD_sf UniProtKB/TrEMBL
  ULD UniProtKB/TrEMBL
KEGG Report rno:501145 UniProtKB/TrEMBL
NCBI Gene 501145 ENTREZGENE
PANTHER DNA-BINDING PROTEIN SATB2 UniProtKB/TrEMBL
  PTHR15116 UniProtKB/TrEMBL
Pfam CUT UniProtKB/TrEMBL
  CUTL UniProtKB/TrEMBL
  Homeobox UniProtKB/TrEMBL
  ULD UniProtKB/TrEMBL
PhenoGen Satb2 PhenoGen
PROSITE CUT UniProtKB/TrEMBL
  CUTL UniProtKB/TrEMBL
  HOMEOBOX_2 UniProtKB/TrEMBL
  ULD UniProtKB/TrEMBL
RatGTEx ENSRNOG00000010188 RatGTEx
SMART CUT UniProtKB/TrEMBL
  HOX UniProtKB/TrEMBL
Superfamily-SCOP Homeodomain_like UniProtKB/TrEMBL
  Lambda_like_DNA UniProtKB/TrEMBL
UniProt A0A0G2JZH5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AHD9 ENTREZGENE, UniProtKB/TrEMBL
  A6IP31 ENTREZGENE, UniProtKB/TrEMBL
  D3ZJ19_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-09-18 Satb2  SATB homeobox 2  Satb2  special AT-rich sequence binding protein 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-02-29 Satb2  special AT-rich sequence binding protein 2  RGD1562369_predicted  similar to KIAA1034-like DNA binding protein (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1562369_predicted  similar to KIAA1034-like DNA binding protein (predicted)  LOC501145  similar to KIAA1034-like DNA binding protein  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC501145  similar to KIAA1034-like DNA binding protein      Symbol and Name status set to provisional 70820 PROVISIONAL