Satb2 (SATB homeobox 2) - Rat Genome Database

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Gene: Satb2 (SATB homeobox 2) Ictidomys tridecemlineatus
Analyze
Symbol: Satb2
Name: SATB homeobox 2
RGD ID: 12648168
Description: ENCODES a protein that exhibits histone deacetylase binding (ortholog); INVOLVED IN cartilage development (ortholog); chromatin remodeling (ortholog); embryonic pattern specification (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); cerebellar ataxia (ortholog); cleft palate (ortholog); FOUND IN histone deacetylase complex (inferred); nucleoplasm (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: DNA-binding protein SATB2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303156,631,640 - 156,803,110 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493650634,962 - 206,490 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493650634,968 - 206,432 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Satb2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303156,631,640 - 156,803,110 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493650634,962 - 206,490 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493650634,968 - 206,432 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SATB2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382199,269,500 - 199,471,266 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2199,269,505 - 199,471,266 (-)EnsemblGRCh38hg38GRCh38
GRCh372200,134,223 - 200,335,989 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362199,842,469 - 200,033,446 (-)NCBINCBI36Build 36hg18NCBI36
Build 342199,959,729 - 200,150,707NCBI
Celera2193,889,754 - 194,091,258 (-)NCBICelera
Cytogenetic Map2q33.1NCBI
HuRef2191,986,953 - 192,188,680 (-)NCBIHuRef
CHM1_12200,140,433 - 200,341,932 (-)NCBICHM1_1
T2T-CHM13v2.02199,753,552 - 199,955,035 (-)NCBIT2T-CHM13v2.0
Satb2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39156,833,145 - 57,019,350 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl156,833,140 - 57,017,809 (-)EnsemblGRCm39 Ensembl
GRCm38156,793,981 - 56,981,190 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl156,793,981 - 56,978,650 (-)EnsemblGRCm38mm10GRCm38
MGSCv37156,850,825 - 57,028,178 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36156,740,812 - 56,915,879 (-)NCBIMGSCv36mm8
Celera157,309,396 - 57,486,902 (-)NCBICelera
Cytogenetic Map1C1.3NCBI
cM Map128.72NCBI
Satb2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8965,842,351 - 66,028,569 (-)NCBIGRCr8
mRatBN7.2958,348,027 - 58,534,256 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl958,350,246 - 58,530,707 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx966,851,232 - 67,028,002 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0971,967,156 - 72,143,935 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0970,285,214 - 70,461,986 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0963,456,877 - 63,642,193 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl963,456,783 - 63,641,400 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0963,262,569 - 63,445,219 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4955,647,221 - 55,824,683 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera955,813,347 - 55,988,972 (-)NCBICelera
Cytogenetic Map9q31NCBI
Satb2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554031,663,676 - 1,811,109 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554031,663,676 - 1,811,088 (+)NCBIChiLan1.0ChiLan1.0
SATB2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213101,887,491 - 102,083,405 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B101,902,495 - 102,098,402 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B86,518,043 - 86,720,212 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B204,408,681 - 204,603,286 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B204,406,887 - 204,599,539 (-)Ensemblpanpan1.1panPan2
SATB2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1378,548,295 - 8,837,416 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl378,551,017 - 8,731,149 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha379,435,262 - 9,724,366 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0378,446,518 - 8,736,073 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl378,446,544 - 8,629,216 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1378,437,231 - 8,726,605 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0378,409,230 - 8,698,299 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0378,428,358 - 8,717,903 (-)NCBIUU_Cfam_GSD_1.0
SATB2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15102,964,417 - 103,158,232 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115102,962,635 - 103,172,224 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215114,023,917 - 114,065,366 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SATB2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11084,761,450 - 84,954,339 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1084,761,426 - 84,954,361 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040114,497,881 - 114,689,237 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Satb2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248891,321,345 - 1,466,319 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248891,321,323 - 1,466,368 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005324333 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSSTOT00000022271   ⟹   ENSSTOP00000015585
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493650634,964 - 203,719 (+)Ensembl
Ensembl Acc Id: ENSSTOT00000033081   ⟹   ENSSTOP00000024698
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493650634,964 - 204,086 (+)Ensembl
Ensembl Acc Id: ENSSTOT00000042696   ⟹   ENSSTOP00000030046
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493650634,962 - 206,490 (+)Ensembl
RefSeq Acc Id: XM_005324333   ⟹   XP_005324390
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405303156,631,640 - 156,803,110 (-)NCBI
SpeTri2.0NW_00493650634,968 - 206,432 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005324390 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000015585.2
  ENSSTOP00000024698.1
  ENSSTOP00000030046.1
GenBank Protein KAG3274929 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005324390   ⟸   XM_005324333
- UniProtKB: A0A287D964 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSTOP00000015585   ⟸   ENSSTOT00000022271
Ensembl Acc Id: ENSSTOP00000030046   ⟸   ENSSTOT00000042696
Ensembl Acc Id: ENSSTOP00000024698   ⟸   ENSSTOT00000033081
Protein Domains
CUT   CUTL   Homeobox   ULD


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000024964 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000022271.2 UniProtKB/TrEMBL
  ENSSTOT00000033081.1 UniProtKB/TrEMBL
  ENSSTOT00000042696.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.260.40 UniProtKB/TrEMBL
  1.10.260.70 UniProtKB/TrEMBL
  3.10.20.710 UniProtKB/TrEMBL
  Homeodomain-like UniProtKB/TrEMBL
InterPro CUT_dom UniProtKB/TrEMBL
  CUTL UniProtKB/TrEMBL
  Homeobox-like_sf UniProtKB/TrEMBL
  Homeobox_dom UniProtKB/TrEMBL
  Lambda_DNA-bd_dom_sf UniProtKB/TrEMBL
  SATB1/SATB2 UniProtKB/TrEMBL
  SATB_CUTL_sf UniProtKB/TrEMBL
  SATB_ULD_sf UniProtKB/TrEMBL
  ULD UniProtKB/TrEMBL
NCBI Gene Satb2 ENTREZGENE
PANTHER DNA-BINDING PROTEIN SATB2 UniProtKB/TrEMBL
  PTHR15116 UniProtKB/TrEMBL
Pfam CUT UniProtKB/TrEMBL
  CUTL UniProtKB/TrEMBL
  Homeodomain UniProtKB/TrEMBL
  ULD UniProtKB/TrEMBL
PROSITE CUT UniProtKB/TrEMBL
  CUTL UniProtKB/TrEMBL
  HOMEOBOX_2 UniProtKB/TrEMBL
  ULD UniProtKB/TrEMBL
SMART CUT UniProtKB/TrEMBL
  HOX UniProtKB/TrEMBL
Superfamily-SCOP SSF46689 UniProtKB/TrEMBL
  SSF47413 UniProtKB/TrEMBL
UniProt A0A287CTU9_ICTTR UniProtKB/TrEMBL
  A0A287D964 ENTREZGENE, UniProtKB/TrEMBL
  I3MTZ0_ICTTR UniProtKB/TrEMBL