Kctd18 (potassium channel tetramerization domain containing 18) - Rat Genome Database

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Gene: Kctd18 (potassium channel tetramerization domain containing 18) Rattus norvegicus
Analyze
Symbol: Kctd18
Name: potassium channel tetramerization domain containing 18
RGD ID: 1564820
Description: Predicted to be involved in protein homooligomerization. Orthologous to human KCTD18 (potassium channel tetramerization domain containing 18); INTERACTS WITH bisphenol A; cadmium dichloride; endosulfan.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: BTB/POZ domain-containing protein KCTD18; LOC301436; potassium channel tetramerisation domain containing 18; RGD1564820; similar to potassium channel tetramerisation domain containing 18
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2959,502,220 - 59,566,857 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl959,502,232 - 59,566,857 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx968,002,289 - 68,066,928 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0973,118,202 - 73,182,841 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0971,436,305 - 71,500,944 (-)NCBIRnor_WKY
Rnor_6.0964,849,547 - 64,916,652 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl964,852,289 - 64,916,652 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0964,649,827 - 64,714,190 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4956,616,134 - 56,680,759 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera956,948,290 - 57,012,301 (-)NCBICelera
Cytogenetic Map9q31NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

References

References - curated
# Reference Title Reference Citation
1. GOA pipeline RGD automated data pipeline
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Kctd18
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2959,502,220 - 59,566,857 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl959,502,232 - 59,566,857 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx968,002,289 - 68,066,928 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0973,118,202 - 73,182,841 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0971,436,305 - 71,500,944 (-)NCBIRnor_WKY
Rnor_6.0964,849,547 - 64,916,652 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl964,852,289 - 64,916,652 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0964,649,827 - 64,714,190 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4956,616,134 - 56,680,759 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera956,948,290 - 57,012,301 (-)NCBICelera
Cytogenetic Map9q31NCBI
KCTD18
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382200,488,958 - 200,510,068 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl2200,488,958 - 200,519,784 (-)EnsemblGRCh38hg38GRCh38
GRCh372201,353,681 - 201,374,791 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362201,061,926 - 201,083,037 (-)NCBINCBI36Build 36hg18NCBI36
Build 342201,179,191 - 201,200,298NCBI
Celera2195,108,519 - 195,129,627 (-)NCBICelera
Cytogenetic Map2q33.1NCBI
HuRef2193,206,069 - 193,227,176 (-)NCBIHuRef
CHM1_12201,359,660 - 201,380,767 (-)NCBICHM1_1
T2T-CHM13v2.02200,972,443 - 200,993,548 (-)NCBIT2T-CHM13v2.0
Kctd18
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39157,994,260 - 58,009,298 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl157,994,260 - 58,058,115 (-)EnsemblGRCm39 Ensembl
GRCm38157,955,101 - 57,970,141 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl157,955,101 - 58,018,956 (-)EnsemblGRCm38mm10GRCm38
MGSCv37158,011,945 - 58,026,928 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36157,904,600 - 57,914,598 (-)NCBIMGSCv36mm8
Celera158,468,917 - 58,483,900 (-)NCBICelera
Cytogenetic Map1C1.3NCBI
Kctd18
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955403913,621 - 923,631 (+)NCBIChiLan1.0ChiLan1.0
KCTD18
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12B205,900,029 - 205,920,776 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B205,900,032 - 205,920,776 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02B87,742,323 - 87,763,530 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
KCTD18
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1379,574,407 - 9,593,978 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl379,588,386 - 9,596,158 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3710,461,760 - 10,482,875 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0379,474,410 - 9,495,528 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl379,474,397 - 9,495,713 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1379,461,767 - 9,481,279 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0379,434,021 - 9,453,540 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0379,433,016 - 9,454,130 (-)NCBIUU_Cfam_GSD_1.0
Kctd18
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303157,612,152 - 157,631,228 (-)NCBIHiC_Itri_2
SpeTri2.0NW_004936825396,359 - 415,478 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KCTD18
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15104,071,268 - 104,099,188 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115104,070,208 - 104,099,300 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215115,343,268 - 115,371,296 (-)NCBISscrofa10.2Sscrofa10.2susScr3
KCTD18
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11085,986,243 - 86,005,518 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1085,987,397 - 86,002,429 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040113,362,357 - 113,453,417 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Kctd18
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624889572,064 - 589,386 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Kctd18
202 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:122
Count of miRNA genes:99
Interacting mature miRNAs:112
Transcripts:ENSRNOT00000029879
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10054125Srcrt7Stress Responsive Cort QTL 73.330.0011blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)9187073594Rat
1331757Cdexp1CD45RC expression in CD8 T cells QTL 14.3CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)9102453767509080Rat
631680Cm11Cardiac mass QTL 113.10.00089heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)92043051965430519Rat
70186Niddm26Non-insulin dependent diabetes mellitus QTL 263.87blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)92207116986369743Rat
631643Bp120Blood pressure QTL 12030.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)92207120067071200Rat
1300180Bw14Body weight QTL 143.776body mass (VT:0001259)body weight (CMO:0000012)92375402461381613Rat
7207814Bmd91Bone mineral density QTL 913.5femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)92375414483851531Rat
70218Cm28Cardiac mass QTL 288.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)92526804479271759Rat
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)925268044114175309Rat
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)925661188100929786Rat
1641894Alcrsp12Alcohol response QTL 12response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)92746863972468639Rat
7411656Foco26Food consumption QTL 269.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)93253550577535505Rat
7411571Bw138Body weight QTL 13814.30.001body mass (VT:0001259)body weight gain (CMO:0000420)93253550577535505Rat
1598834Memor11Memory QTL 112.5exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)93696235977814038Rat
8662828Vetf6Vascular elastic tissue fragility QTL 63.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)93696235992058970Rat
2290450Scl57Serum cholesterol level QTL 574.15blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)93696235995410867Rat
6903941Pur31Proteinuria QTL 310.036total urine protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)94019418885194188Rat
11353949Bp393Blood pressure QTL 393arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94019418885194188Rat
61352Bp34Blood pressure QTL 345arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94249534379271511Rat
10058949Gmadr5Adrenal mass QTL 520.014adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)94279151387976209Rat
11353951Bp394Blood pressure QTL 394arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94464992189649921Rat
12879506Pur33Proteinuria QTL 33total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)94464992189649921Rat
11353957Bmd92Bone mineral density QTL 920.01tibia mineral mass (VT:1000283)volumetric bone mineral density (CMO:0001553)94611419991114199Rat
631656Bp108Blood pressure QTL 1085.970.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94859825193598251Rat
1598849Memor17Memory QTL 172.2exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)94996854671098346Rat
2303170Bp332Blood pressure QTL 3323.730.027arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)95584784177026453Rat
2303180Bp333Blood pressure QTL 3330.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)95662771378595166Rat
2303180Bp333Blood pressure QTL 3330.001arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)95662771378595166Rat
2303180Bp333Blood pressure QTL 3330.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)95662771378595166Rat
1578760Cm53Cardiac mass QTL 533.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)956771635101771635Rat
724515Uae16Urinary albumin excretion QTL 168urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)958163035100929646Rat

Markers in Region
AA956316  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2959,517,104 - 59,517,235 (+)MAPPERmRatBN7.2
Rnor_6.0964,867,174 - 64,867,304NCBIRnor6.0
Rnor_5.0964,664,712 - 64,664,842UniSTSRnor5.0
RGSC_v3.4956,631,007 - 56,631,137UniSTSRGSC3.4
Celera956,963,168 - 56,963,298UniSTS
RH 3.4 Map9483.1UniSTS
Cytogenetic Map9q31UniSTS
RH129758  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2959,502,431 - 59,502,646 (+)MAPPERmRatBN7.2
Rnor_6.0964,852,501 - 64,852,715NCBIRnor6.0
Rnor_5.0964,650,039 - 64,650,253UniSTSRnor5.0
RGSC_v3.4956,616,334 - 56,616,548UniSTSRGSC3.4
Celera956,948,490 - 56,948,704UniSTS
RH 3.4 Map9483.6UniSTS
Cytogenetic Map9q31UniSTS
BI293111  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2959,510,964 - 59,511,180 (+)MAPPERmRatBN7.2
Rnor_6.0964,861,034 - 64,861,249NCBIRnor6.0
Rnor_5.0964,658,572 - 64,658,787UniSTSRnor5.0
RGSC_v3.4956,624,867 - 56,625,082UniSTSRGSC3.4
Celera956,957,028 - 56,957,243UniSTS
RH 3.4 Map9483.3UniSTS
Cytogenetic Map9q31UniSTS
BE106490  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2959,514,860 - 59,515,021 (+)MAPPERmRatBN7.2
Rnor_6.0964,864,930 - 64,865,090NCBIRnor6.0
Rnor_5.0964,662,468 - 64,662,628UniSTSRnor5.0
RGSC_v3.4956,628,763 - 56,628,923UniSTSRGSC3.4
Celera956,960,924 - 56,961,084UniSTS
RH 3.4 Map9490.3UniSTS
Cytogenetic Map9q31UniSTS
RH139203  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2959,511,606 - 59,511,753 (+)MAPPERmRatBN7.2
Rnor_6.0964,861,676 - 64,861,822NCBIRnor6.0
Rnor_5.0964,659,214 - 64,659,360UniSTSRnor5.0
RGSC_v3.4956,625,509 - 56,625,655UniSTSRGSC3.4
Celera956,957,670 - 56,957,816UniSTS
RH 3.4 Map9490.4UniSTS
Cytogenetic Map9q31UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 6 12 51 20 33 10
Low 3 43 51 41 7 41 8 11 23 15 8 1 8
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001106914 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006244965 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006244966 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006244967 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008767084 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008767086 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008767087 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596363 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596364 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596365 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083314 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083315 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083316 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083317 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473965 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209862 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228496 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000214 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000029879   ⟹   ENSRNOP00000030486
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl959,502,232 - 59,566,857 (-)Ensembl
Rnor_6.0 Ensembl964,852,301 - 64,916,652 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000092764   ⟹   ENSRNOP00000075987
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl964,859,165 - 64,867,474 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000092797
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl964,853,720 - 64,860,692 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000092822   ⟹   ENSRNOP00000075940
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl964,852,289 - 64,867,441 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000092859   ⟹   ENSRNOP00000075955
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl964,852,301 - 64,867,476 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000093113
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl964,853,825 - 64,856,240 (-)Ensembl
RefSeq Acc Id: NM_001106914   ⟹   NP_001100384
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2959,502,232 - 59,566,857 (-)NCBI
Rnor_6.0964,852,301 - 64,916,652 (-)NCBI
Rnor_5.0964,649,827 - 64,714,190 (-)NCBI
RGSC_v3.4956,616,134 - 56,680,759 (-)RGD
Celera956,948,290 - 57,012,301 (-)RGD
Sequence:
RefSeq Acc Id: XM_006244965   ⟹   XP_006245027
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2959,502,231 - 59,517,485 (-)NCBI
Rnor_6.0964,849,547 - 64,865,936 (-)NCBI
Rnor_5.0964,649,827 - 64,714,190 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006244967   ⟹   XP_006245029
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2959,502,231 - 59,517,485 (-)NCBI
Rnor_6.0964,849,547 - 64,867,438 (-)NCBI
Rnor_5.0964,649,827 - 64,714,190 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008767086   ⟹   XP_008765308
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2959,502,231 - 59,517,532 (-)NCBI
Rnor_6.0964,849,547 - 64,867,740 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008767087   ⟹   XP_008765309
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2959,502,231 - 59,520,383 (-)NCBI
Rnor_6.0964,849,547 - 64,870,188 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596364   ⟹   XP_017451853
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2959,502,220 - 59,517,515 (-)NCBI
Rnor_6.0964,849,547 - 64,862,225 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039083313   ⟹   XP_038939241
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2959,502,220 - 59,517,513 (-)NCBI
RefSeq Acc Id: XM_039083314   ⟹   XP_038939242
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2959,502,220 - 59,517,372 (-)NCBI
RefSeq Acc Id: XM_039083315   ⟹   XP_038939243
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2959,503,275 - 59,517,518 (-)NCBI
RefSeq Acc Id: XM_039083316   ⟹   XP_038939244
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2959,502,220 - 59,517,480 (-)NCBI
RefSeq Acc Id: XM_039083317   ⟹   XP_038939245
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2959,502,220 - 59,517,489 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_001100384   ⟸   NM_001106914
- UniProtKB: D4A827 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006245029   ⟸   XM_006244967
- Peptide Label: isoform X1
- UniProtKB: D4A827 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006245027   ⟸   XM_006244965
- Peptide Label: isoform X1
- UniProtKB: D4A827 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008765309   ⟸   XM_008767087
- Peptide Label: isoform X1
- UniProtKB: D4A827 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008765308   ⟸   XM_008767086
- Peptide Label: isoform X1
- UniProtKB: D4A827 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017451853   ⟸   XM_017596364
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: ENSRNOP00000075987   ⟸   ENSRNOT00000092764
RefSeq Acc Id: ENSRNOP00000075955   ⟸   ENSRNOT00000092859
RefSeq Acc Id: ENSRNOP00000075940   ⟸   ENSRNOT00000092822
RefSeq Acc Id: ENSRNOP00000030486   ⟸   ENSRNOT00000029879
RefSeq Acc Id: XP_038939241   ⟸   XM_039083313
- Peptide Label: isoform X1
- UniProtKB: D4A827 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038939245   ⟸   XM_039083317
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038939244   ⟸   XM_039083316
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038939242   ⟸   XM_039083314
- Peptide Label: isoform X1
- UniProtKB: D4A827 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038939243   ⟸   XM_039083315
- Peptide Label: isoform X2
Protein Domains
BTB

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A827-F1-model_v2 AlphaFold D4A827 1-417 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1564820 AgrOrtholog
BioCyc Gene G2FUF-27471 BioCyc
Ensembl Genes ENSRNOG00000027091 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000030486 ENTREZGENE
  ENSRNOP00000030486.4 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000029879 ENTREZGENE
  ENSRNOT00000029879.5 UniProtKB/TrEMBL
Gene3D-CATH 3.30.710.10 UniProtKB/TrEMBL
InterPro BTB/POZ-like UniProtKB/TrEMBL
  BTB/POZ_fold UniProtKB/TrEMBL
  K_chnl_volt-dep_Kv_tetra UniProtKB/TrEMBL
  KCTD18_C UniProtKB/TrEMBL
KEGG Report rno:301436 UniProtKB/TrEMBL
NCBI Gene 301436 ENTREZGENE
Pfam K_tetra UniProtKB/TrEMBL
  KCTD18_C UniProtKB/TrEMBL
PhenoGen Kctd18 PhenoGen
SMART BTB UniProtKB/TrEMBL
Superfamily-SCOP BTB/POZ_fold UniProtKB/TrEMBL
UniProt D4A827 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-07-09 Kctd18  potassium channel tetramerization domain containing 18  Kctd18  potassium channel tetramerisation domain containing 18  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-07 Kctd18  potassium channel tetramerisation domain containing 18  RGD1564820_predicted  similar to potassium channel tetramerisation domain containing 18 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1564820_predicted  similar to potassium channel tetramerisation domain containing 18 (predicted)  LOC301436  similar to potassium channel tetramerisation domain containing 18  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC301436  similar to potassium channel tetramerisation domain containing 18      Symbol and Name status set to provisional 70820 PROVISIONAL