Sumo1 (small ubiquitin-like modifier 1) - Rat Genome Database

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Gene: Sumo1 (small ubiquitin-like modifier 1) Rattus norvegicus
Analyze
Symbol: Sumo1
Name: small ubiquitin-like modifier 1
RGD ID: 1306919
Description: Predicted to enable enzyme binding activity; potassium channel regulator activity; and protein tag activity. Involved in cellular response to hypoxia. Located in XY body; dendrite; and fibrillar center. Part of heterochromatin. Colocalizes with PML body. Human ortholog(s) of this gene implicated in orofacial cleft 10. Orthologous to human SUMO1 (small ubiquitin like modifier 1); PARTICIPATES IN sumoylation pathway; RNA transport pathway; INTERACTS WITH 2,4-dinitrotoluene; 2,6-dinitrotoluene; 3H-1,2-dithiole-3-thione.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC301442; MGC109561; small ubiquitin-related modifier 1; small ubiquitin-related modifier-1; SMT3 suppressor of mif two 3 homolog 1; SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae); SMT3 suppressor of mif two 3 homolog 1 (yeast); SUMO-1; ubiquitin-like 1 (sentrin)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8968,572,901 - 68,602,803 (-)NCBIGRCr8
mRatBN7.2961,078,790 - 61,108,697 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl961,077,435 - 61,108,761 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx969,573,528 - 69,603,470 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0974,689,507 - 74,719,450 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0973,007,792 - 73,037,736 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0966,453,428 - 66,483,614 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl966,453,438 - 66,483,614 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0966,258,853 - 66,288,103 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4958,212,538 - 58,242,760 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1958,359,520 - 58,389,742 (-)NCBI
Celera958,513,570 - 58,543,459 (-)NCBICelera
Cytogenetic Map9q31NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
(R)-lipoic acid  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,4-dinitrotoluene  (EXP)
2,6-dinitrotoluene  (EXP)
3H-1,2-dithiole-3-thione  (EXP)
6-propyl-2-thiouracil  (EXP)
acetylsalicylic acid  (ISO)
acrolein  (ISO)
aflatoxin M1  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
Antimony trioxide  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
Benzo[ghi]perylene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bortezomib  (ISO)
cadmium dichloride  (EXP,ISO)
Chorionic gonadotropin  (ISO)
cobalt atom  (ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
daidzein  (ISO)
daidzein 7-O-beta-D-glucoside  (ISO)
diallyl disulfide  (EXP)
diarsenic trioxide  (ISO)
dicrotophos  (ISO)
dimethyl sulfoxide  (ISO)
dimethylarsinous acid  (ISO)
dipotassium bis[mu-tartrato(4-)]diantimonate(2-) trihydrate  (ISO)
doxorubicin  (ISO)
endosulfan  (ISO)
ethanol  (ISO)
ethyl methanesulfonate  (ISO)
flutamide  (EXP)
folic acid  (ISO)
formaldehyde  (ISO)
genistein  (ISO)
genistein 7-O-beta-D-glucoside  (ISO)
Ginkgoic acid  (ISO)
glycitein  (ISO)
glycitin  (ISO)
hinokiflavone  (ISO)
lead nitrate  (ISO)
lipoic acid  (ISO)
maneb  (ISO)
methimazole  (EXP)
mevinphos  (EXP)
mifepristone  (ISO)
N-acetyl-L-cysteine  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
nocodazole  (ISO)
NS-398  (ISO)
ozone  (ISO)
paracetamol  (ISO)
paraquat  (ISO)
pentobarbital  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
picoxystrobin  (ISO)
pirinixic acid  (ISO)
progesterone  (ISO)
quinomethionate  (ISO)
resveratrol  (EXP,ISO)
rifampicin  (EXP)
rotenone  (ISO)
SB 203580  (ISO)
sulfadimethoxine  (EXP)
thapsigargin  (EXP)
Triptolide  (EXP)
triptonide  (ISO)
valproic acid  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. The giant fibrillar center: a nucleolar structure enriched in upstream binding factor (UBF) that appears in transcriptionally more active sensory ganglia neurons. Casafont I, etal., J Struct Biol. 2007 Sep;159(3):451-61. Epub 2007 May 25.
2. Tollip is a mediator of protein sumoylation. Ciarrocchi A, etal., PLoS One. 2009;4(2):e4404. Epub 2009 Feb 9.
3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. Subcellular localization of Daxx determines its opposing functions in ischemic cell death. Jung YS, etal., FEBS Lett. 2007 Mar 6;581(5):843-52. Epub 2007 Feb 2.
5. Agonist-induced PKC phosphorylation regulates GluK2 SUMOylation and kainate receptor endocytosis. Konopacki FA, etal., Proc Natl Acad Sci U S A. 2011 Dec 6;108(49):19772-7. doi: 10.1073/pnas.1111575108. Epub 2011 Nov 16.
6. SUMOylation regulates kainate-receptor-mediated synaptic transmission. Martin S, etal., Nature. 2007 May 17;447(7142):321-5. Epub 2007 May 7.
7. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
8. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
9. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
10. GOA pipeline RGD automated data pipeline
11. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
12. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
13. SUMO modified proteins localize to the XY body of pachytene spermatocytes. Rogers RS, etal., Chromosoma. 2004 Nov;113(5):233-43. Epub 2004 Sep 3.
14. Sumoylation in axons triggers retrograde transport of the RNA-binding protein La. van Niekerk EA, etal., Proc Natl Acad Sci U S A. 2007 Jul 31;104(31):12913-8. Epub 2007 Jul 23.
15. SUMOylation of the kainate receptor subunit GluK2 contributes to the activation of the MLK3-JNK3 pathway following kainate stimulation. Zhu QJ, etal., FEBS Lett. 2012 May 7;586(9):1259-64. doi: 10.1016/j.febslet.2012.03.048. Epub 2012 Mar 31.
Additional References at PubMed
PMID:9412458   PMID:9885291   PMID:11514557   PMID:11889051   PMID:12072434   PMID:12477932   PMID:14752048   PMID:15023536   PMID:15489334   PMID:15572661   PMID:15637059   PMID:15660128  
PMID:15767674   PMID:15950612   PMID:15959518   PMID:16144832   PMID:16626738   PMID:16735515   PMID:16791210   PMID:16955485   PMID:16990542   PMID:17000718   PMID:17053029   PMID:17081985  
PMID:17081986   PMID:17696781   PMID:18408734   PMID:18538659   PMID:18571432   PMID:18579533   PMID:18644859   PMID:18681895   PMID:19033381   PMID:19200349   PMID:19223394   PMID:19744555  
PMID:19819240   PMID:20209145   PMID:20725866   PMID:21070824   PMID:21454665   PMID:21518833   PMID:21900893   PMID:21931855   PMID:21965678   PMID:21968017   PMID:22082260   PMID:22406621  
PMID:22658674   PMID:23639777   PMID:24651376   PMID:25220405   PMID:25236484   PMID:25378699   PMID:25634095   PMID:25976847   PMID:26979866   PMID:28553222   PMID:28902364   PMID:31642335  
PMID:35002525  


Genomics

Comparative Map Data
Sumo1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8968,572,901 - 68,602,803 (-)NCBIGRCr8
mRatBN7.2961,078,790 - 61,108,697 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl961,077,435 - 61,108,761 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx969,573,528 - 69,603,470 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0974,689,507 - 74,719,450 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0973,007,792 - 73,037,736 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0966,453,428 - 66,483,614 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl966,453,438 - 66,483,614 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0966,258,853 - 66,288,103 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4958,212,538 - 58,242,760 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1958,359,520 - 58,389,742 (-)NCBI
Celera958,513,570 - 58,543,459 (-)NCBICelera
Cytogenetic Map9q31NCBI
SUMO1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382202,206,171 - 202,238,597 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2202,206,182 - 202,238,599 (-)EnsemblGRCh38hg38GRCh38
GRCh372203,070,894 - 203,103,320 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362202,779,148 - 202,811,567 (-)NCBINCBI36Build 36hg18NCBI36
Build 342202,896,408 - 202,928,828NCBI
Celera2196,822,670 - 196,855,115 (-)NCBICelera
Cytogenetic Map2q33.1NCBI
HuRef2194,919,783 - 194,951,410 (-)NCBIHuRef
CHM1_12203,077,457 - 203,109,867 (-)NCBICHM1_1
T2T-CHM13v2.02202,687,204 - 202,719,634 (-)NCBIT2T-CHM13v2.0
Sumo1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39159,678,593 - 59,709,993 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl159,625,717 - 59,709,993 (-)EnsemblGRCm39 Ensembl
GRCm38159,639,434 - 59,670,834 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl159,586,558 - 59,670,834 (-)EnsemblGRCm38mm10GRCm38
MGSCv37159,696,278 - 59,727,678 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36159,583,983 - 59,615,355 (-)NCBIMGSCv36mm8
Celera160,154,082 - 60,185,562 (-)NCBICelera
Cytogenetic Map1C2NCBI
cM Map130.32NCBI
Sumo1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545712,538,480 - 12,565,803 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545712,538,974 - 12,565,803 (+)NCBIChiLan1.0ChiLan1.0
SUMO1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213104,831,064 - 104,863,301 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B104,846,063 - 104,878,299 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B89,461,773 - 89,493,879 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B207,613,649 - 207,645,590 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B207,613,654 - 207,645,590 (-)Ensemblpanpan1.1panPan2
SUMO1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13711,199,937 - 11,229,743 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3711,200,590 - 11,229,754 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3712,083,987 - 12,113,143 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03711,136,626 - 11,165,785 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3711,133,840 - 11,166,196 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13711,087,432 - 11,116,739 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03711,065,890 - 11,095,045 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03711,059,162 - 11,088,313 (-)NCBIUU_Cfam_GSD_1.0
Sumo1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303159,432,685 - 159,443,682 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367261,399,050 - 1,429,205 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367261,402,977 - 1,413,974 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SUMO1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15105,818,858 - 105,850,233 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115105,820,237 - 105,850,099 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215117,249,291 - 117,249,369 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SUMO1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11087,917,324 - 87,957,152 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666040111,440,837 - 111,472,603 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sumo1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476514,205,051 - 14,229,864 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476514,205,071 - 14,229,864 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Sumo1
120 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:120
Count of miRNA genes:97
Interacting mature miRNAs:109
Transcripts:ENSRNOT00000022047
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10054125Srcrt7Stress Responsive Cort QTL 73.330.0011blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)9187073594Rat
1331757Cdexp1CD45RC expression in CD8 T cells QTL 14.3CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)9102453767509080Rat
631680Cm11Cardiac mass QTL 113.10.00089heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)92043051965430519Rat
70186Niddm26Non-insulin dependent diabetes mellitus QTL 263.87blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)92207116986369743Rat
631643Bp120Blood pressure QTL 12030.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)92207120067071200Rat
1300180Bw14Body weight QTL 143.776body mass (VT:0001259)body weight (CMO:0000012)92375402461381613Rat
7207814Bmd91Bone mineral density QTL 913.5femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)92375414483851531Rat
70218Cm28Cardiac mass QTL 288.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)92526804479271759Rat
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)925268044114175309Rat
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)925661188100929786Rat
1641894Alcrsp12Alcohol response QTL 12response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)92746863972468639Rat
7411656Foco26Food consumption QTL 269.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)93253550577535505Rat
7411571Bw138Body weight QTL 13814.30.001body mass (VT:0001259)body weight gain (CMO:0000420)93253550577535505Rat
1598834Memor11Memory QTL 112.5exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)93696235977814038Rat
8662828Vetf6Vascular elastic tissue fragility QTL 63.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)93696235992058970Rat
2290450Scl57Serum cholesterol level QTL 574.15blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)93696235995410867Rat
6903941Pur31Proteinuria QTL 310.036urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)94019418885194188Rat
11353949Bp393Blood pressure QTL 393arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94019418885194188Rat
61352Bp34Blood pressure QTL 345arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94249534379271511Rat
10058949Gmadr5Adrenal mass QTL 520.014adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)94279151387976209Rat
11353951Bp394Blood pressure QTL 394arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94464992189649921Rat
12879506Pur33Proteinuria QTL 33urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)94464992189649921Rat
11353957Bmd92Bone mineral density QTL 920.01tibia mineral mass (VT:1000283)volumetric bone mineral density (CMO:0001553)94611419991114199Rat
631656Bp108Blood pressure QTL 1085.970.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94859825193598251Rat
1598849Memor17Memory QTL 172.2exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)94996854671098346Rat
2303170Bp332Blood pressure QTL 3323.730.027arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)95584784177026453Rat
2303180Bp333Blood pressure QTL 3330.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)95662771378595166Rat
2303180Bp333Blood pressure QTL 3330.001arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)95662771378595166Rat
2303180Bp333Blood pressure QTL 3330.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)95662771378595166Rat
1578760Cm53Cardiac mass QTL 533.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)956771635101771635Rat
724515Uae16Urinary albumin excretion QTL 168urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)958163035100929646Rat

Markers in Region
BE117566  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2961,095,681 - 61,095,831 (+)MAPPERmRatBN7.2
Rnor_6.0966,470,604 - 66,470,753NCBIRnor6.0
Rnor_5.0966,275,093 - 66,275,242UniSTSRnor5.0
RGSC_v3.4958,229,750 - 58,229,899UniSTSRGSC3.4
Celera958,530,447 - 58,530,596UniSTS
RH 3.4 Map9515.8UniSTS
Cytogenetic Map9q31UniSTS
RH136616  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24155,619,936 - 155,620,127 (+)MAPPERmRatBN7.2
Rnor_6.04155,206,093 - 155,206,283NCBIRnor6.0
Rnor_5.04222,231,621 - 222,231,811UniSTSRnor5.0
RGSC_v3.44158,849,978 - 158,850,168UniSTSRGSC3.4
Celera4144,441,045 - 144,441,235UniSTS
Cytogenetic Map9q31UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 57 41 19 41 8 11 74 35 41 11 8
Low
Below cutoff

Sequence


RefSeq Acc Id: ENSRNOT00000022047   ⟹   ENSRNOP00000022048
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl961,078,797 - 61,108,761 (-)Ensembl
Rnor_6.0 Ensembl966,453,438 - 66,483,614 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000108699   ⟹   ENSRNOP00000087606
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl961,077,435 - 61,095,467 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000109220   ⟹   ENSRNOP00000092576
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl961,078,818 - 61,108,500 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000109290   ⟹   ENSRNOP00000080272
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl961,077,435 - 61,108,725 (-)Ensembl
RefSeq Acc Id: NM_001009672   ⟹   NP_001009672
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8968,572,901 - 68,602,803 (-)NCBI
mRatBN7.2961,078,790 - 61,108,697 (-)NCBI
Rnor_6.0966,453,428 - 66,483,614 (-)NCBI
Rnor_5.0966,258,853 - 66,288,103 (-)NCBI
RGSC_v3.4958,212,538 - 58,242,760 (-)RGD
Celera958,513,570 - 58,543,459 (-)RGD
Sequence:
RefSeq Acc Id: NP_001009672   ⟸   NM_001009672
- UniProtKB: Q5I0H3 (UniProtKB/Swiss-Prot),   A6IPB1 (UniProtKB/TrEMBL),   A0A8I6A3G5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000022048   ⟸   ENSRNOT00000022047
RefSeq Acc Id: ENSRNOP00000092576   ⟸   ENSRNOT00000109220
RefSeq Acc Id: ENSRNOP00000087606   ⟸   ENSRNOT00000108699
RefSeq Acc Id: ENSRNOP00000080272   ⟸   ENSRNOT00000109290
Protein Domains
Ubiquitin-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5I0H3-F1-model_v2 AlphaFold Q5I0H3 1-101 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696702
Promoter ID:EPDNEW_R7227
Type:initiation region
Name:Sumo1_1
Description:small ubiquitin-like modifier 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0966,483,686 - 66,483,746EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306919 AgrOrtholog
BioCyc Gene G2FUF-27405 BioCyc
Ensembl Genes ENSRNOG00000016133 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOG00055023851 UniProtKB/Swiss-Prot
  ENSRNOG00060019006 UniProtKB/Swiss-Prot
  ENSRNOG00065027194 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000022047.6 UniProtKB/TrEMBL
  ENSRNOT00000108699 ENTREZGENE
  ENSRNOT00000108699.1 UniProtKB/TrEMBL
  ENSRNOT00000109220.1 UniProtKB/TrEMBL
  ENSRNOT00000109290.1 UniProtKB/TrEMBL
  ENSRNOT00055040969 UniProtKB/Swiss-Prot
  ENSRNOT00060033015 UniProtKB/Swiss-Prot
  ENSRNOT00065046947 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7325996 IMAGE-MGC_LOAD
InterPro Rad60/SUMO-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SUMO1_Ubl UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ubiquitin-like_dom UniProtKB/TrEMBL
  Ubiquitin-like_domsf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ubiquitin_dom UniProtKB/Swiss-Prot
KEGG Report rno:301442 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:109561 IMAGE-MGC_LOAD
NCBI Gene 301442 ENTREZGENE
PANTHER SMALL UBIQUITIN-RELATED MODIFIER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SMALL UBIQUITIN-RELATED MODIFIER 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Rad60-SLD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ubiquitin UniProtKB/TrEMBL
PhenoGen Sumo1 PhenoGen
PROSITE UBIQUITIN_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000016133 RatGTEx
  ENSRNOG00055023851 RatGTEx
  ENSRNOG00060019006 RatGTEx
  ENSRNOG00065027194 RatGTEx
SMART UBQ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF54236 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I5ZPY9_RAT UniProtKB/TrEMBL
  A0A8I6A3G5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AI63_RAT UniProtKB/TrEMBL
  A0A8L2UJM8_RAT UniProtKB/TrEMBL
  A6IPB1 ENTREZGENE, UniProtKB/TrEMBL
  Q5I0H3 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-06-14 Sumo1  small ubiquitin-like modifier 1  Sumo1  SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-10-23 Sumo1  SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)  Sumo1  SMT3 suppressor of mif two 3 homolog 1 (yeast)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Sumo1  SMT3 suppressor of mif two 3 homolog 1 (yeast)  Sumo1_predicted  SMT3 suppressor of mif two 3 homolog 1 (yeast) (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Sumo1_predicted  SMT3 suppressor of mif two 3 homolog 1 (yeast) (predicted)      Symbol and Name status set to approved 70820 APPROVED