Nrp2 (neuropilin 2) - Rat Genome Database

Name: Nrp2
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Nrp2 (neuropilin 2) Rattus norvegicus

Analyze

Symbol:

Nrp2

Name:

neuropilin 2

RGD ID:

621442

Description:

Predicted to enable identical protein binding activity and semaphorin receptor activity. Involved in axon guidance. Predicted to be active in axon and glutamatergic synapse. Predicted to be integral component of postsynaptic membrane. Orthologous to human NRP2 (neuropilin 2); PARTICIPATES IN vascular endothelial growth factor signaling pathway; INTERACTS WITH 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine; acetamide.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

neuropilin-2; vascular endothelial cell growth factor 165 receptor 2

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	NRP2 (neuropilin 2)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Nrp2 (neuropilin 2)	HGNC	Treefam, EggNOG, OrthoMCL, NCBI, OMA, HomoloGene, Inparanoid, Panther, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Nrp2 (neuropilin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	NRP2 (neuropilin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	NRP2 (neuropilin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Nrp2 (neuropilin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	NRP2 (neuropilin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	NRP2 (neuropilin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Nrp2 (neuropilin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	NRP2 (neuropilin 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Nrp2 (neuropilin 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	nrp2b (neuropilin 2b)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|SonicParanoid)
Danio rerio (zebrafish):	nrp2a (neuropilin 2a)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	9	64,122,815 - 64,238,007 (+)	NCBI	mRatBN7.2
mRatBN7.2 Ensembl	9	64,123,132 - 64,237,958 (+)	Ensembl
Rnor_6.0	9	69,496,875 - 69,609,802 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	69,497,121 - 69,612,087 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	69,307,221 - 69,420,379 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	61,348,529 - 61,460,457 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	9	61,495,510 - 61,607,439 (+)	NCBI
Celera	9	61,541,966 - 61,654,219 (+)	NCBI		Celera
Cytogenetic Map	9	q32	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autism spectrum disorder (ISS)

autistic disorder (ISO)

genetic disease (ISO)

Hirschsprung's disease (ISO)

Neurodevelopmental Disorders (ISO)

primary pulmonary hypertension (ISO)

visual epilepsy (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-butoxyethanol (ISO)

3,3',4,4',5-pentachlorobiphenyl (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

3-Nitrobenzanthrone (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

acetamide (EXP)

aflatoxin B1 (ISO)

ammonium chloride (EXP)

antirheumatic drug (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

calcitriol (ISO)

CGP 52608 (ISO)

chloroprene (ISO)

chlorthalidone (EXP)

cisplatin (ISO)

cobalt dichloride (ISO)

cocaine (EXP)

crocidolite asbestos (ISO)

cyclophosphamide (EXP)

decabromodiphenyl ether (EXP)

dexamethasone (ISO)

dibutyl phthalate (ISO)

dichlorine (EXP)

dicrotophos (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

endosulfan (EXP)

entinostat (ISO)

ethanol (ISO)

folic acid (ISO)

fonofos (ISO)

furan (EXP,ISO)

genistein (ISO)

gentamycin (EXP)

hydroquinone O-beta-D-glucopyranoside (ISO)

indometacin (ISO)

kainic acid (ISO)

manganese(II) chloride (EXP)

methapyrilene (ISO)

methylmercury chloride (ISO)

Muraglitazar (EXP)

N-acetylsphingosine (ISO)

N-methyl-4-phenylpyridinium (EXP)

nickel atom (ISO)

nickel sulfate (ISO)

ozone (EXP)

p-menthan-3-ol (ISO)

panobinostat (ISO)

paracetamol (EXP)

paraquat (EXP)

parathion (ISO)

pentetrazol (ISO)

phenobarbital (ISO)

phenylmercury acetate (ISO)

pirinixic acid (EXP,ISO)

procymidone (EXP)

rotenone (EXP)

SB 431542 (ISO)

silicon dioxide (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

sphingosine 1-phosphate (ISO)

succimer (ISO)

sunitinib (ISO)

tamoxifen (ISO)

terbufos (ISO)

Tesaglitazar (EXP)

tetrachloromethane (ISO)

thalidomide (ISO)

thioacetamide (EXP)

trichloroethene (EXP,ISO)

trichostatin A (ISO)

triptonide (ISO)

troglitazone (EXP,ISO)

valproic acid (ISO)

vinclozolin (EXP)

vorinostat (ISO)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

angiogenesis (IEA)

axon extension involved in axon guidance (ISO)

axon guidance (IBA,IEA,IEP,ISO)

cellular response to leukemia inhibitory factor (ISO)

dorsal root ganglion morphogenesis (ISO)

facial nerve structural organization (ISO)

facioacoustic ganglion development (ISO)

gonadotrophin-releasing hormone neuronal migration to the hypothalamus (ISO)

heart development (ISO)

negative chemotaxis (ISO)

nerve development (ISO)

neural crest cell migration (ISO)

neural crest cell migration involved in autonomic nervous system development (ISO)

neuron migration (ISO)

outflow tract septum morphogenesis (ISO)

regulation of postsynapse organization (ISO)

semaphorin-plexin signaling pathway (IEA)

semaphorin-plexin signaling pathway involved in neuron projection guidance (ISO)

sensory neuron axon guidance (ISO)

sympathetic ganglion development (ISO)

sympathetic neuron projection extension (ISO)

sympathetic neuron projection guidance (ISO)

trigeminal ganglion development (ISO)

trunk neural crest cell migration (ISO)

vascular endothelial growth factor signaling pathway (IEA)

ventral trunk neural crest cell migration (ISO)

vestibulocochlear nerve structural organization (ISO)

Cellular Component

axon (IBA,ISO)

glutamatergic synapse (IBA,ISO)

integral component of membrane (IEA)

integral component of plasma membrane (IBA)

integral component of postsynaptic membrane (IBA,ISO)

Molecular Function

heparin binding (IEA)

identical protein binding (ISO)

metal ion binding (IEA)

protein binding (ISO)

semaphorin receptor activity (IBA,IEA,ISO)

signaling receptor activity (IBA)

vascular endothelial growth factor receptor activity (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

vascular endothelial growth factor signaling pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Neuropilin-2 mediates axonal fasciculation, zonal segregation, but not axonal convergence, of primary accessory olfactory neurons.	Cloutier JF, etal., Neuron 2002 Mar 14;33(6):877-92.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
4.	Neuropilin is a semaphorin III receptor.	Kolodkin AL, etal., Cell 1997 Aug 22;90(4):753-62.
5.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
6.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
7.	PID Annotation Import Pipeline	Pipeline to import Pathway Interaction Database annotations from NCI into RGD
8.	GOA pipeline	RGD automated data pipeline
9.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
11.	Neuropilin-2 is overexpressed in the rat brain after limbic seizures.	Shimakawa S, etal., Brain Res 2002 Nov 22;956(1):67-73.

Additional References at PubMed

PMID:12852851	PMID:15239958	PMID:15635621	PMID:15677725	PMID:15814794	PMID:16319111	PMID:18356247	PMID:18632792	PMID:19386662	PMID:19855168	PMID:20010807	PMID:20439489
PMID:20524965	PMID:21059704	PMID:22790009	PMID:25143608	PMID:25752543	PMID:26030152	PMID:26053665	PMID:26410366	PMID:31211440

Genomics

Comparative Map Data

Nrp2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	9	64,122,815 - 64,238,007 (+)	NCBI	mRatBN7.2
mRatBN7.2 Ensembl	9	64,123,132 - 64,237,958 (+)	Ensembl
Rnor_6.0	9	69,496,875 - 69,609,802 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	69,497,121 - 69,612,087 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	69,307,221 - 69,420,379 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	61,348,529 - 61,460,457 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	9	61,495,510 - 61,607,439 (+)	NCBI
Celera	9	61,541,966 - 61,654,219 (+)	NCBI		Celera
Cytogenetic Map	9	q32	NCBI

NRP2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	205,682,501 - 205,798,131 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	2	205,681,990 - 205,798,133 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	206,547,225 - 206,662,855 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	206,255,469 - 206,371,102 (+)	NCBI	NCBI36		hg18	NCBI36
Build 34	2	206,372,729 - 206,488,362	NCBI
Celera	2	200,305,001 - 200,420,624 (+)	NCBI
Cytogenetic Map	2	q33.3	NCBI
HuRef	2	198,395,758 - 198,511,368 (+)	NCBI		HuRef
CHM1_1	2	206,553,933 - 206,669,559 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	2	206,164,852 - 206,280,478 (+)	NCBI

Nrp2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	62,742,476 - 62,857,851 (+)	NCBI	GRCm39		mm39
GRCm39 Ensembl	1	62,742,444 - 62,857,854 (+)	Ensembl
GRCm38	1	62,703,317 - 62,818,692 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	62,703,285 - 62,818,695 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	62,749,891 - 62,865,266 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	1	62,637,986 - 62,750,163 (+)	NCBI			mm8
Celera	1	63,214,234 - 63,328,949 (+)	NCBI		Celera
Cytogenetic Map	1	C2	NCBI

Nrp2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955457	9,197,405 - 9,316,787 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955457	9,197,621 - 9,316,789 (-)	NCBI	ChiLan1.0	ChiLan1.0

NRP2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	2B	211,042,324 - 211,157,547 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2B	211,042,324 - 211,157,547 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	2B	92,911,721 - 93,027,032 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

NRP2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	37	14,293,545 - 14,408,984 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	37	14,293,614 - 14,406,949 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	37	15,172,096 - 15,287,617 (+)	NCBI
ROS_Cfam_1.0	37	14,230,443 - 14,345,834 (+)	NCBI
ROS_Cfam_1.0 Ensembl	37	14,230,535 - 14,345,832 (+)	Ensembl
UMICH_Zoey_3.1	37	14,184,082 - 14,299,459 (+)	NCBI
UNSW_CanFamBas_1.0	37	14,156,464 - 14,271,604 (+)	NCBI
UU_Cfam_GSD_1.0	37	14,150,952 - 14,266,106 (+)	NCBI

Nrp2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	162,471,295 - 162,587,007 (+)	NCBI
SpeTri2.0	NW_004936631	2,106,378 - 2,222,082 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

NRP2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	108,974,816 - 109,092,305 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	15	108,974,246 - 109,092,316 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Pig Cytomap	15	q21-q26	NCBI

NRP2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	10	91,460,179 - 91,575,408 (+)	NCBI	ChlSab1.1		chlSab2
ChlSab1.1 Ensembl	10	91,460,373 - 91,557,430 (+)	Ensembl	ChlSab1.1		chlSab2
Vero_WHO_p1.0	NW_023666040	107,804,373 - 107,919,654 (-)	NCBI	Vero_WHO_p1.0

Nrp2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624765	10,372,099 - 10,484,963 (-)	Ensembl	HetGla_female_1.0		hetGla2
HetGla 1.0	NW_004624765	10,372,172 - 10,484,766 (-)	NCBI	HetGla_female_1.0		hetGla2

Position Markers

D9Got64

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	64,229,147 - 64,229,355 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	69,603,235 - 69,603,440	NCBI	Rnor6.0
Rnor_5.0	9	69,413,192 - 69,413,397	UniSTS	Rnor5.0
RGSC_v3.4	9	61,454,319 - 61,454,525	RGD	RGSC3.4
RGSC_v3.4	9	61,454,320 - 61,454,525	UniSTS	RGSC3.4
RGSC_v3.1	9	61,601,302 - 61,601,507	RGD
Celera	9	61,647,464 - 61,647,669	UniSTS
RH 3.4 Map	9	517.5	UniSTS
RH 3.4 Map	9	517.5	RGD
RH 2.0 Map	9	580.4	RGD
Cytogenetic Map	9	q31	UniSTS

BF406209

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	64,204,318 - 64,204,564 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	69,578,406 - 69,578,651	NCBI	Rnor6.0
Rnor_5.0	9	69,388,363 - 69,388,608	UniSTS	Rnor5.0
RGSC_v3.4	9	61,429,491 - 61,429,736	UniSTS	RGSC3.4
Celera	9	61,622,635 - 61,622,880	UniSTS
RH 3.4 Map	9	518.8	UniSTS
Cytogenetic Map	9	q31	UniSTS

BE097230

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	64,219,159 - 64,219,317 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	69,593,248 - 69,593,405	NCBI	Rnor6.0
Rnor_5.0	9	69,403,205 - 69,403,362	UniSTS	Rnor5.0
RGSC_v3.4	9	61,444,333 - 61,444,490	UniSTS	RGSC3.4
Celera	9	61,637,477 - 61,637,634	UniSTS
RH 3.4 Map	9	518.8	UniSTS
Cytogenetic Map	9	q31	UniSTS

BF396291

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	64,211,029 - 64,211,182 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	69,585,116 - 69,585,268	NCBI	Rnor6.0
Rnor_5.0	9	69,395,073 - 69,395,225	UniSTS	Rnor5.0
RGSC_v3.4	9	61,436,201 - 61,436,353	UniSTS	RGSC3.4
Celera	9	61,629,345 - 61,629,497	UniSTS
RH 3.4 Map	9	518.1	UniSTS
Cytogenetic Map	9	q31	UniSTS

BF397549

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	64,235,472 - 64,235,682 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	69,609,558 - 69,609,767	NCBI	Rnor6.0
Rnor_5.0	9	69,419,515 - 69,419,724	UniSTS	Rnor5.0
RGSC_v3.4	9	61,460,643 - 61,460,852	UniSTS	RGSC3.4
Celera	9	61,654,405 - 61,654,614	UniSTS
RH 3.4 Map	9	518.8	UniSTS
Cytogenetic Map	9	q31	UniSTS

Nrp2

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	64,138,946 - 64,139,013 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	69,513,002 - 69,513,068	NCBI	Rnor6.0
Rnor_5.0	9	69,323,318 - 69,323,384	UniSTS	Rnor5.0
Cytogenetic Map	9	q31	UniSTS

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
10054125	Srcrt7	Stress Responsive Cort QTL 7	3.33	0.0011	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	9	1	87073594	Rat
1331757	Cdexp1	CD45RC expression in CD8 T cells QTL 1	4.3		CD8-positive T cell quantity (VT:0008077)	blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)	9	1024537	67509080	Rat
631680	Cm11	Cardiac mass QTL 11	3.1	0.00089	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	9	20430519	65430519	Rat
70186	Niddm26	Non-insulin dependent diabetes mellitus QTL 26	3.87		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	9	22071169	86369743	Rat
631643	Bp120	Blood pressure QTL 120	3	0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	22071200	67071200	Rat
7207814	Bmd91	Bone mineral density QTL 91	3.5		femur size trait (VT:1000369)	femoral neck cross-sectional area (CMO:0001697)	9	23754144	83851531	Rat
70218	Cm28	Cardiac mass QTL 28	8.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	9	25268044	79271759	Rat
724544	Uae9	Urinary albumin excretion QTL 9	4.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	9	25268044	114175309	Rat
731164	Uae25	Urinary albumin excretion QTL 25	3.5	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	25661188	100929786	Rat
1641894	Alcrsp12	Alcohol response QTL 12			response to alcohol trait (VT:0010489)	brain neurotensin receptor 1 density (CMO:0002068)	9	27468639	72468639	Rat
7411656	Foco26	Food consumption QTL 26	9.8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	9	32535505	77535505	Rat
7411571	Bw138	Body weight QTL 138	14.3	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	9	32535505	77535505	Rat
1598834	Memor11	Memory QTL 11	2.5		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	9	36962359	77814038	Rat
8662828	Vetf6	Vascular elastic tissue fragility QTL 6	3.9		artery integrity trait (VT:0010639)	patent ductus arteriosus score (CMO:0002566)	9	36962359	92058970	Rat
2290450	Scl57	Serum cholesterol level QTL 57	4.15		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	9	36962359	95410867	Rat
6903941	Pur31	Proteinuria QTL 31		0.036	total urine protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	9	40194188	85194188	Rat
11353949	Bp393	Blood pressure QTL 393			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	40194188	85194188	Rat
61352	Bp34	Blood pressure QTL 34	5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	42495343	79271511	Rat
10058949	Gmadr5	Adrenal mass QTL 5	2	0.014	adrenal gland mass (VT:0010420)	both adrenal glands wet weight to body weight ratio (CMO:0002411)	9	42791513	87976209	Rat
11353951	Bp394	Blood pressure QTL 394			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	44649921	89649921	Rat
12879506	Pur33	Proteinuria QTL 33			total urine protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	9	44649921	89649921	Rat
11353957	Bmd92	Bone mineral density QTL 92		0.01	tibia mineral mass (VT:1000283)	volumetric bone mineral density (CMO:0001553)	9	46114199	91114199	Rat
631656	Bp108	Blood pressure QTL 108	5.97	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	48598251	93598251	Rat
1598849	Memor17	Memory QTL 17	2.2		exploratory behavior trait (VT:0010471)	difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)	9	49968546	71098346	Rat
2303170	Bp332	Blood pressure QTL 332	3.73	0.027	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	9	55847841	77026453	Rat
2303180	Bp333	Blood pressure QTL 333		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	9	56627713	78595166	Rat
2303180	Bp333	Blood pressure QTL 333		0.001	arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	9	56627713	78595166	Rat
2303180	Bp333	Blood pressure QTL 333		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	56627713	78595166	Rat
1578760	Cm53	Cardiac mass QTL 53	3.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	9	56771635	101771635	Rat
724515	Uae16	Urinary albumin excretion QTL 16	8		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	58163035	100929646	Rat
1578659	Tspe1	Trichinella spiralis expulsion QTL 1	4.8		parasite quantity (VT:0010441)	logarithm of the intestinal adult Trichinella spiralis count (CMO:0002024)	9	61381434	65691299	Rat
1300134	Bp185	Blood pressure QTL 185	3.73		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	9	61381434	104821652	Rat
1581580	Uae34	Urinary albumin excretion QTL 34			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	62072275	96470995	Rat
1578757	Pur6	Proteinuria QTL 6	3.3	0.005	total urine protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	9	62072275	96470995	Rat
61385	Edpm9	Estrogen-dependent pituitary mass QTL 9	3.43	0.05	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	9	63869687	108869687	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	49
Count of miRNA genes:	34
Interacting mature miRNAs:	43
Transcripts:	ENSRNOT00000042562
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	22	22	7	18	7	1	1	56	23	30	11	1
Low		21	35	34	1	34	7	10	18	12	11		7
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_030869	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006245039	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006245040	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006245041	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006245042	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008767137	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039084243	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AF016297	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473965	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ211370	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000214	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000042562 ⟹ ENSRNOP00000047206

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	64,123,132 - 64,237,958 (+)	Ensembl
Rnor_6.0 Ensembl	9	69,497,121 - 69,612,087 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000105009 ⟹ ENSRNOP00000090812

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	64,123,132 - 64,236,683 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000119267 ⟹ ENSRNOP00000094102

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	64,123,132 - 64,217,279 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000119960 ⟹ ENSRNOP00000086265

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	64,123,132 - 64,236,683 (+)	Ensembl

RefSeq Acc Id:

NM_030869 ⟹ NP_110496

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	9	64,123,377 - 64,235,287 (+)	NCBI
Rnor_6.0	9	69,497,434 - 69,609,372 (+)	NCBI
Rnor_5.0	9	69,307,221 - 69,420,379 (+)	NCBI
RGSC_v3.4	9	61,348,529 - 61,460,457 (+)	RGD
Celera	9	61,541,966 - 61,654,219 (+)	RGD

Sequence:

show sequence

AGACCATACACGCGTTTGGGTTTGAAGAGGAAACTGGTCTCCGCTTCCCCAGCTTGCTCCCTCT
TTGCTGATTTCAGGGGCTATCTCTTAGTGAGGTGGAGATATTCCAGCAAGAATAAAGGTGAAGG
CAGACGGACCTCCAGGACGCAGGAGGAAAACGCTGATCATTAGAGACCTTTGCAGAAGACACCA
CAAGGAAGAAAATTAGAGAGGAAAAACACAAAGACATTATACGAGATCCCACCAACCTAGCCCT
GGAGAGAGCCTCTCTGTCAAAAATGGATATGTTTCCTCTCACCTGGATTTTCTTAGCTCTGTAC
TTTTCGGGACACAAAGTGAGAAGCCAGCAAGATCCGCCCTGCGGAGGTCGGCTGAATTCCAAAG
ATGCTGGCTATATCACTTCCCCAGGTTACCCCCAGGACTATCCCTCTCACCAGAACTGTGAGTG
GGTTGTCTATGCCCCCGAACCCAACCAGAAGATTGTCCTCAACTTCAACCCTCACTTTGAAATC
GAGAAGCATGACTGCAAGTATGACTTCATTGAGATTCGGGATGGAGACAGTGAGTCAGCTGACC
TCCTGGGCAAGCACTGTGGGAACATTGCCCCTCCCACCATCATCTCTTCCGGCTCCGTGTTATA
TATCAAGTTCACATCAGACTACGCCCGGCAGGGGGCAGGTTTCTCCCTACGCTATGAGATCTTC
AAAACAGGCTCTGAAGATTGTTCCAAGAACTTTACAAGCCCCAATGGGACCATTGAATCTCCAG
GGTTTCCAGAGAAATATCCACACAATCTGGACTGTACCTTCACCATCCTGGCCAAACCCAGGAT
GGAGATCATCCTACAGTTCCTGACCTTTGACCTGGAGCATGACCCTCTACAAGTGGGGGAAGGA
GACTGTAAATATGACTGGCTGGACATCTGGGATGGCATTCCACATGTTGGGCCTCTGATTGGCA
AGTACTGTGGGACGAAAACACCCTCCAAACTCCGCTCGTCCACAGGGATCCTCTCCCTGACCTT
TCACACCGACATGGCCGTGGCCAAGGATGGCTTCTCAGCACGTTACTATTTGGTCCACCAAGAA
CCACCTGAGAACTTTCAGTGCAATGCCCCTCTGGGAATGGAGTCTGGCCGGATTGCTAATGAAC
AGATCAGTGCCTCATCCACCTTCTCTGATGGGAGGTGGACTCCTCAACAGAGCAGGCTCCATGG
TGATGACAATGGCTGGACACCCAACGTGGATTCCAACAAGGAGTATCTCCAGGTGGACCTGCGC
TTCCTAACCATGCTCACAGCCATTGCAACACAAGGAGCCATTTCCAGGGAGACCCAGAAGGGCT
ACTACGTCAAATCGTACAAGCTGGAAGTCAGCACAAACGGGGAAGATTGGATGGTCTACCGGCA
TGGCAAAAACCACAAGGTATTCCAGGCTAACAATGATGCCACCGAGTTGGTTCTGAACAAGCTG
CACACGCCGCTGTTGACTCGTTTCATCAGGATCCGCCCGCAGACGTGGCATTTGGGCATAGCCC
TTCGACTGGAGCTCTTTGGTTGCCGGGTCACAGATGCACCCTGCTCCAACATGCTGGGAATGCT
CTCGGGCCTCATTGCTGATACCCAGATCTCTGCCTCCTCCACCCGAGAGTACCTCTGGAGCCCC
AGTGCTGCCCGCCTGGTTAGCAGCCGCTCTGGCTGGTTCCCTCGGAACCCTCAAGCCCAGCCAG
GTGAAGAATGGCTTCAGGTGGATCTTGGGACACCCAAGACGGTGAAAGGCGTCATCATCCAGGG
GGCCCGAGGAGGAGACAGTATCACTGCCATGGAAGCCAGGGCATTTGTACGCAAGTTCAAAGTC
TCCTACAGCCTAAATGGCAAGGACTGGGAATATATCCAGGACCCCAGGACTCAGCAGCCAAAGC
TGTTTGAAGGGAACATGCACTATGACACCCCCGACATCCGAAGGTTCGAGCCAGTTCCAGCACA
GTACGTGCGGGTATACCCAGAGAGGTGGTCACCAGCGGGCATCGGGATGAGGCTGGAGGTCCTG
GGCTGTGACTGGACAGACTCAAAGCCCACAGTGGAGACGCTGGGACCCACCGTAAAGAGTGAAG
AGACCACCACCCCATATCCCATGGATGAGGATGCCACGGAGTGTGGGGAAAACTGCAGCTTTGA
GGATGACAAAGATTTGCAACTTCCTTCAGGATTCAACTGCAACTTTGATTTTCCTGAAGAGACC
TGTGGTTGGATGTACGACCGTGCCAAGTGGCTGCAGAGTACCTGGATCAGCAGTGCCAACCCTA
ACGACAGAACGTTTCCAGATGACAAGAACTTCCTGAAACTACAGAGCGACGGCGGACGAGAGGG
CCAGTTTGGGCGGCTCATCAGCCCACCAGTGCACCTGCCCCGAAGCCCTGTGTGCATGGAGTTC
CAATACCAAGCCATGGGCGGCCACGGGGTGGCACTGCAGGTGGTTCGGGAAGCCAGACAGGAAA
GCAAACTCCTTTGGGTCATCCGCGAGGACCAGGGCAGCGAGTGGAAGCATGGACGCATTATCCT
GCCCAGCTATGACATGGAGTATCAGATCGTATTCGAGGGAGTGATCGGGAAAGGGCGATCCGGA
GAGATTTCCATCGACGACATTCGGATAAGCACCGATGTCCCACTGGAGAACTGCATGGAACCCA
TCTCGGCTTTTGCAGTGGACATCCCAGAAATCCATGGGGGAGAGGGCTATGAAGATGAGATTGA
TGATGACTATGAAGGAGATTGGAACAACTCTTCCTCTACCTCAGGGGCTGGTAGTCCCTCATCT
GGCAAAGAAAAGAGCTGGCTGTACACACTGGACCCCATCCTGATCACCATCATTGCCATGAGCT
CGCTGGGTGTCCTGCTGGGGGCCACCTGTGCGGGCCTCCTCCTCTACTGCACCTGCTCCTACTC
TGGCCTGAGTTCGAGAAGCTGCACCACACTGGAGAACTACAACTTTGAGCTCTACGACGGCCTC
AAGCACAAGGTCAAGATCAATCACCAGAAGTGCTGCTCGGAGGCATGACCGATTGTGTCTGAAT
CGCTTCTGGCGTTTCATTCCAGCGAGAGGGGCTAGGGAAGATTACTTTTTTTTTCCTTTGGAAA
CTGAATGCCATAATCTGGATCAAACCGATCCAGAATACTGAAGGTATGGACAGAACAGACAGGC
CAGTCTAGGAGAAAGGAAGATGCAGCCGTGAAGGGGATCATTGCCCACAGAGGACAGTGGTGGT
CAAGTTAATGCAGGAACCGGGCCCGTGTTCTCTGCCGGGACACAGACAGGAGCGCATCTCCTCG
GAGTCAACAG

hide sequence

RefSeq Acc Id:

XM_006245039 ⟹ XP_006245101

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	9	64,122,815 - 64,238,007 (+)	NCBI
Rnor_6.0	9	69,496,875 - 69,609,802 (+)	NCBI
Rnor_5.0	9	69,307,221 - 69,420,379 (+)	NCBI

Sequence:

show sequence

GAGCCGGAGGGGAGACAGAGGAGGCGAGCGAGGCACCAGCCCGCAGCCCGCCCCCGGCACATCC
TCAGAAGCACAGACACTCGGCCCGGCGCTGGGCGAGGTGGAGGTGAGGGCGGGCGCCAGCGAAC
TCGGAGAGCCGCTCGCACACTCGCGGGCGATCTCAGCCGCCGCCGCCGCCGCCGCACCCGCAGC
AGCACCAGCAGCACCGGCCACAGCAGCTTCCTGCCTCGCTCTCCCCTCCAGAGACTGGCCAAGC
GGGTGTAGCCGCTGGGGAAGGCTCCCGCTTAGGGGAACCCGGAGAAGACTAAGAGCCGGGCGCC
TGACTGCCTACCACTCCGCCTGTCCAGCGGTCGGTACCTCTGCCCGCGTGTGTCCTGGGTGCCG
GCAGACCTGTGTCAGTTTGCGCTTCTGAGATCACACAGCTGCTTAGGGGCCGTGTGATGCCCAG
GGCAATTCTTGGCTTTGGTTATTATTATTATTACTATTATTTTGCGCTTAGCTTTCGGGAAACC
CTCGTGATGTTGTAGGATAAAGGAAATGACACTTTGAGGAACTGAAGAGACCATACACGCGTTT
GGGTTTGAAGAGGAAACTGGTCTCCGCTTCCCCAGCTTGCTCCCTCTTTGCTGATTTCAGGGGC
TATCTCTTAGTGAGGTGGAGATATTCCAGCAAGAATAAAGGTGAAGGCAGACGGACCTCCAGGA
CGCAGGAGGAAAACGCTGATCATTAGAGACCTTTGCAGAAGACACCACAAGGAAGAAAATTAGA
GAGGAAAAACACAAAGACATAATTATACGAGATCCCACCAACCTAGCCCTGGAGAGAGCCTCTC
TGTCAAAAATGGATATGTTTCCTCTCACCTGGATTTTCTTAGCTCTGTACTTTTCGGGACACAA
AGTGAGAAGCCAGCAAGATCCGCCCTGCGGAGGTCGGCTGAATTCCAAAGATGCTGGCTATATC
ACTTCCCCAGGTTACCCCCAGGACTATCCCTCTCACCAGAACTGTGAGTGGGTTGTCTATGCCC
CCGAACCCAACCAGAAGATTGTCCTCAACTTCAACCCTCACTTTGAAATCGAGAAGCATGACTG
CAAGTATGACTTCATTGAGATTCGGGATGGAGACAGTGAGTCAGCTGACCTCCTGGGCAAGCAC
TGTGGGAACATTGCCCCTCCCACCATCATCTCTTCCGGCTCCGTGTTATATATCAAGTTCACAT
CAGACTACGCCCGGCAGGGGGCAGGTTTCTCCCTACGCTATGAGATCTTCAAAACAGGCTCTGA
AGATTGTTCCAAGAACTTTACAAGCCCCAATGGGACCATTGAATCTCCAGGGTTTCCAGAGAAA
TATCCACACAATCTGGACTGTACCTTCACCATCCTGGCCAAACCCAGGATGGAGATCATCCTAC
AGTTCCTGACCTTTGACCTGGAGCATGACCCTCTACAAGTGGGGGAAGGAGACTGTAAATATGA
CTGGCTGGACATCTGGGATGGCATTCCACATGTTGGGCCTCTGATTGGCAAGTACTGTGGGACG
AAAACACCCTCCAAACTCCGCTCGTCCACAGGGATCCTCTCCCTGACCTTTCACACCGACATGG
CCGTGGCCAAGGATGGCTTCTCAGCACGTTACTATTTGGTCCACCAAGAACCACCTGAGAACTT
TCAGTGCAATGCCCCTCTGGGAATGGAGTCTGGCCGGATTGCTAATGAACAGATCAGTGCCTCA
TCCACCTTCTCTGATGGGAGGTGGACTCCTCAACAGAGCAGGCTCCATGGTGATGACAATGGCT
GGACACCCAACGTGGATTCCAACAAGGAGTATCTCCAGGTGGACCTGCGCTTCCTAACCATGCT
CACAGCCATTGCAACACAAGGAGCCATTTCCAGGGAGACCCAGAAGGGCTACTACGTCAAATCG
TACAAGCTGGAAGTCAGCACAAACGGGGAAGATTGGATGGTCTACCGGCATGGCAAAAACCACA
AGGTATTCCAGGCTAACAATGATGCCACCGAGTTGGTTCTGAACAAGCTGCACACGCCGCTGTT
GACTCGTTTCATCAGGATCCGCCCGCAGACGTGGCATTTGGGCATAGCCCTTCGACTGGAGCTC
TTTGGTTGCCGGGTCACAGATGCACCCTGCTCCAACATGCTGGGAATGCTCTCGGGCCTCATTG
CTGATACCCAGATCTCTGCCTCCTCCACCCGAGAGTACCTCTGGAGCCCCAGTGCTGCCCGCCT
GGTTAGCAGCCGCTCTGGCTGGTTCCCTCGGAACCCTCAAGCCCAGCCAGGTGAAGAATGGCTT
CAGGTGGATCTTGGGACACCCAAGACGGTGAAAGGCGTCATCATCCAGGGGGCCCGAGGAGGAG
ACAGTATCACTGCCATGGAAGCCAGGGCATTTGTACGCAAGTTCAAAGTCTCCTACAGCCTAAA
TGGCAAGGACTGGGAATATATCCAGGACCCCAGGACTCAGCAGCCAAAGCTGTTTGAAGGGAAC
ATGCACTATGACACCCCCGACATCCGAAGGTTCGAGCCAGTTCCAGCACAGTACGTGCGGGTAT
ACCCAGAGAGGTGGTCACCAGCGGGCATCGGGATGAGGCTGGAGGTCCTGGGCTGTGACTGGAC
AGACTCAAAGCCCACAGTGGAGACGCTGGGACCCACCGTAAAGAGTGAAGAGACCACCACCCCA
TATCCCATGGATGAGGATGCCACGGAGTGTGGGGAAAACTGCAGCTTTGAGGATGACAAAGATT
TGCAACTTCCTTCAGGATTCAACTGCAACTTTGATTTTCCTGAAGAGACCTGTGGTTGGATGTA
CGACCGTGCCAAGTGGCTGCAGAGTACCTGGATCAGCAGTGCCAACCCTAACGACAGAACGTTT
CCAGATGACAAGAACTTCCTGAAACTACAGAGCGACGGCGGACGAGAGGGCCAGTTTGGGCGGC
TCATCAGCCCACCAGTGCACCTGCCCCGAAGCCCTGTGTGCATGGAGTTCCAATACCAAGCCAT
GGGCGGCCACGGGGTGGCACTGCAGGTGGTTCGGGAAGCCAGACAGGAAAGCAAACTCCTTTGG
GTCATCCGCGAGGACCAGGGCAGCGAGTGGAAGCATGGACGCATTATCCTGCCCAGCTATGACA
TGGAGTATCAGATCGTATTCGAGGGAGTGATCGGGAAAGGGCGATCCGGAGAGATTTCCATCGA
CGACATTCGGATAAGCACCGATGTCCCACTGGAGAACTGCATGGAACCCATCTCGGCTTTTGCA
GGTGAGGATTTTAAAGTGGACATCCCAGAAATCCATGGGGGAGAGGGCTATGAAGATGAGATTG
ATGATGACTATGAAGGAGATTGGAACAACTCTTCCTCTACCTCAGGGGCTGGTAGTCCCTCATC
TGGCAAAGAAAAGAGCTGGCTGTACACACTGGACCCCATCCTGATCACCATCATTGCCATGAGC
TCGCTGGGTGTCCTGCTGGGGGCCACCTGTGCGGGCCTCCTCCTCTACTGCACCTGCTCCTACT
CTGGCCTGAGTTCGAGAAGCTGCACCACACTGGAGAACTACAACTTTGAGCTCTACGACGGCCT
CAAGCACAAGGTCAAGATCAATCACCAGAAGTGCTGCTCGGAGGCATGACCGATTGTGTCTGAA
TCGCTTCTGGCGTTTCATTCCAGCGAGAGGGGCTAGGGAAGATTACTTTTTTTTTCCTTTGGAA
ACTGAATGCCATAATCTGGATCAAACCGATCCAGAATACTGAAGGTATGGACAGAACAGACAGG
CCAGTCTAGGAGAAAGGAAGATGCAGCCGTGAAGGGGATCATTGCCCACAGAGGACAGTGGTGG
TCAAGTTAATGCAGGAACCGGGCCCGTGTTCTCTGCCGGGACACAGACAGGAGCGCATCTCCTC
GGAGTCAACAGTTCTGTTTCGCTTGTGGGTTTGTTATGATTATGATTGCTATTGTTATATTTTA
TTCTTATTTTTTGATCTGTGAGCAACTCAAAGAGGCAGAAGAGGATGGCTTATCTGGGGCAGAA
AGTGGAGAGATCATCACTGGTCTCCATATCTCTTTCTTGAAAAGCGAAGGGGCTTTTCAGCCCT
TCTGTCCTGAGAAACGGAACCTAAGAAACAAAAGCTTAGCTCACCCTCAGATGGCCTCCCAACT
CAAGAGACTTGCTGGGGAGTGTTCAGACCCTGCCAGCCAACCCTGGGAGCTGCCATTTCCGGTC
CTAGCATATTGAAGTAGGGTGTTATTGCCTTTAACTTTTTTTAATCCAGGGGAAGATTGCCATT
TTAGGGTCAGCTCGAACAATTTTTTCTTATAAGATTTTAAGTAAACCAGAACAGAAA

hide sequence

RefSeq Acc Id:

XM_006245040 ⟹ XP_006245102

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	9	64,122,816 - 64,238,007 (+)	NCBI
Rnor_6.0	9	69,496,876 - 69,609,802 (+)	NCBI
Rnor_5.0	9	69,307,221 - 69,420,379 (+)	NCBI

Sequence:

show sequence

AGCCGGAGGGGAGACAGAGGAGGCGAGCGAGGCACCAGCCCGCAGCCCGCCCCCGGCACATCCT
CAGAAGCACAGACACTCGGCCCGGCGCTGGGCGAGGTGGAGGTGAGGGCGGGCGCCAGCGAACT
CGGAGAGCCGCTCGCACACTCGCGGGCGATCTCAGCCGCCGCCGCCGCCGCCGCACCCGCAGCA
GCACCAGCAGCACCGGCCACAGCAGCTTCCTGCCTCGCTCTCCCCTCCAGAGACTGGCCAAGCG
GGTGTAGCCGCTGGGGAAGGCTCCCGCTTAGGGGAACCCGGAGAAGACTAAGAGCCGGGCGCCT
GACTGCCTACCACTCCGCCTGTCCAGCGGTCGGTACCTCTGCCCGCGTGTGTCCTGGGTGCCGG
CAGACCTGTGTCAGTTTGCGCTTCTGAGATCACACAGCTGCTTAGGGGCCGTGTGATGCCCAGG
GCAATTCTTGGCTTTGGTTATTATTATTATTACTATTATTTTGCGCTTAGCTTTCGGGAAACCC
TCGTGATGTTGTAGGATAAAGGAAATGACACTTTGAGGAACTGAAGAGACCATACACGCGTTTG
GGTTTGAAGAGGAAACTGGTCTCCGCTTCCCCAGCTTGCTCCCTCTTTGCTGATTTCAGGGGCT
ATCTCTTAGTGAGGTGGAGATATTCCAGCAAGAATAAAGGTGAAGGCAGACGGACCTCCAGGAC
GCAGGAGGAAAACGCTGATCATTAGAGACCTTTGCAGAAGACACCACAAGGAAGAAAATTAGAG
AGGAAAAACACAAAGACATAATTATACGAGATCCCACCAACCTAGCCCTGGAGAGAGCCTCTCT
GTCAAAAATGGATATGTTTCCTCTCACCTGGATTTTCTTAGCTCTGTACTTTTCGGGACACAAA
GTGAGAAGCCAGCAAGATCCGCCCTGCGGAGGTCGGCTGAATTCCAAAGATGCTGGCTATATCA
CTTCCCCAGGTTACCCCCAGGACTATCCCTCTCACCAGAACTGTGAGTGGGTTGTCTATGCCCC
CGAACCCAACCAGAAGATTGTCCTCAACTTCAACCCTCACTTTGAAATCGAGAAGCATGACTGC
AAGTATGACTTCATTGAGATTCGGGATGGAGACAGTGAGTCAGCTGACCTCCTGGGCAAGCACT
GTGGGAACATTGCCCCTCCCACCATCATCTCTTCCGGCTCCGTGTTATATATCAAGTTCACATC
AGACTACGCCCGGCAGGGGGCAGGTTTCTCCCTACGCTATGAGATCTTCAAAACAGGCTCTGAA
GATTGTTCCAAGAACTTTACAAGCCCCAATGGGACCATTGAATCTCCAGGGTTTCCAGAGAAAT
ATCCACACAATCTGGACTGTACCTTCACCATCCTGGCCAAACCCAGGATGGAGATCATCCTACA
GTTCCTGACCTTTGACCTGGAGCATGACCCTCTACAAGTGGGGGAAGGAGACTGTAAATATGAC
TGGCTGGACATCTGGGATGGCATTCCACATGTTGGGCCTCTGATTGGCAAGTACTGTGGGACGA
AAACACCCTCCAAACTCCGCTCGTCCACAGGGATCCTCTCCCTGACCTTTCACACCGACATGGC
CGTGGCCAAGGATGGCTTCTCAGCACGTTACTATTTGGTCCACCAAGAACCACCTGAGAACTTT
CAGTGCAATGCCCCTCTGGGAATGGAGTCTGGCCGGATTGCTAATGAACAGATCAGTGCCTCAT
CCACCTTCTCTGATGGGAGGTGGACTCCTCAACAGAGCAGGCTCCATGGTGATGACAATGGCTG
GACACCCAACGTGGATTCCAACAAGGAGTATCTCCAGGTGGACCTGCGCTTCCTAACCATGCTC
ACAGCCATTGCAACACAAGGAGCCATTTCCAGGGAGACCCAGAAGGGCTACTACGTCAAATCGT
ACAAGCTGGAAGTCAGCACAAACGGGGAAGATTGGATGGTCTACCGGCATGGCAAAAACCACAA
GGTATTCCAGGCTAACAATGATGCCACCGAGTTGGTTCTGAACAAGCTGCACACGCCGCTGTTG
ACTCGTTTCATCAGGATCCGCCCGCAGACGTGGCATTTGGGCATAGCCCTTCGACTGGAGCTCT
TTGGTTGCCGGGTCACAGATGCACCCTGCTCCAACATGCTGGGAATGCTCTCGGGCCTCATTGC
TGATACCCAGATCTCTGCCTCCTCCACCCGAGAGTACCTCTGGAGCCCCAGTGCTGCCCGCCTG
GTTAGCAGCCGCTCTGGCTGGTTCCCTCGGAACCCTCAAGCCCAGCCAGGTGAAGAATGGCTTC
AGGTGGATCTTGGGACACCCAAGACGGTGAAAGGCGTCATCATCCAGGGGGCCCGAGGAGGAGA
CAGTATCACTGCCATGGAAGCCAGGGCATTTGTACGCAAGTTCAAAGTCTCCTACAGCCTAAAT
GGCAAGGACTGGGAATATATCCAGGACCCCAGGACTCAGCAGCCAAAGCTGTTTGAAGGGAACA
TGCACTATGACACCCCCGACATCCGAAGGTTCGAGCCAGTTCCAGCACAGTACGTGCGGGTATA
CCCAGAGAGGTGGTCACCAGCGGGCATCGGGATGAGGCTGGAGGTCCTGGGCTGTGACTGGACA
GACTCAAAGCCCACAGTGGAGACGCTGGGACCCACCGTAAAGAGTGAAGAGACCACCACCCCAT
ATCCCATGGATGAGGATGCCACGGAGTGTGGGGAAAACTGCAGCTTTGAGGATGACAAAGATTT
GCAACTTCCTTCAGGATTCAACTGCAACTTTGATTTTCCTGAAGAGACCTGTGGTTGGATGTAC
GACCGTGCCAAGTGGCTGCAGAGTACCTGGATCAGCAGTGCCAACCCTAACGACAGAACGTTTC
CAGATGACAAGAACTTCCTGAAACTACAGAGCGACGGCGGACGAGAGGGCCAGTTTGGGCGGCT
CATCAGCCCACCAGTGCACCTGCCCCGAAGCCCTGTGTGCATGGAGTTCCAATACCAAGCCATG
GGCGGCCACGGGGTGGCACTGCAGGTGGTTCGGGAAGCCAGACAGGAAAGCAAACTCCTTTGGG
TCATCCGCGAGGACCAGGGCAGCGAGTGGAAGCATGGACGCATTATCCTGCCCAGCTATGACAT
GGAGTATCAGATCGTATTCGAGGGAGTGATCGGGAAAGGGCGATCCGGAGAGATTTCCATCGAC
GACATTCGGATAAGCACCGATGTCCCACTGGAGAACTGCATGGAACCCATCTCGGCTTTTGCAG
ATGACTATGAAGGAGATTGGAACAACTCTTCCTCTACCTCAGGGGCTGGTAGTCCCTCATCTGG
CAAAGAAAAGAGCTGGCTGTACACACTGGACCCCATCCTGATCACCATCATTGCCATGAGCTCG
CTGGGTGTCCTGCTGGGGGCCACCTGTGCGGGCCTCCTCCTCTACTGCACCTGCTCCTACTCTG
GCCTGAGTTCGAGAAGCTGCACCACACTGGAGAACTACAACTTTGAGCTCTACGACGGCCTCAA
GCACAAGGTCAAGATCAATCACCAGAAGTGCTGCTCGGAGGCATGACCGATTGTGTCTGAATCG
CTTCTGGCGTTTCATTCCAGCGAGAGGGGCTAGGGAAGATTACTTTTTTTTTCCTTTGGAAACT
GAATGCCATAATCTGGATCAAACCGATCCAGAATACTGAAGGTATGGACAGAACAGACAGGCCA
GTCTAGGAGAAAGGAAGATGCAGCCGTGAAGGGGATCATTGCCCACAGAGGACAGTGGTGGTCA
AGTTAATGCAGGAACCGGGCCCGTGTTCTCTGCCGGGACACAGACAGGAGCGCATCTCCTCGGA
GTCAACAGTTCTGTTTCGCTTGTGGGTTTGTTATGATTATGATTGCTATTGTTATATTTTATTC
TTATTTTTTGATCTGTGAGCAACTCAAAGAGGCAGAAGAGGATGGCTTATCTGGGGCAGAAAGT
GGAGAGATCATCACTGGTCTCCATATCTCTTTCTTGAAAAGCGAAGGGGCTTTTCAGCCCTTCT
GTCCTGAGAAACGGAACCTAAGAAACAAAAGCTTAGCTCACCCTCAGATGGCCTCCCAACTCAA
GAGACTTGCTGGGGAGTGTTCAGACCCTGCCAGCCAACCCTGGGAGCTGCCATTTCCGGTCCTA
GCATATTGAAGTAGGGTGTTATTGCCTTTAACTTTTTTTAATCCAGGGGAAGATTGCCATTTTA
GGGTCAGCTCGAACAATTTTTTCTTATAAGATTTTAAGTAAACCAGAACAGAAA

hide sequence

RefSeq Acc Id:

XM_006245041 ⟹ XP_006245103

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	9	64,122,815 - 64,219,510 (+)	NCBI
Rnor_6.0	9	69,496,875 - 69,593,598 (+)	NCBI
Rnor_5.0	9	69,307,221 - 69,420,379 (+)	NCBI

Sequence:

show sequence

GAGCCGGAGGGGAGACAGAGGAGGCGAGCGAGGCACCAGCCCGCAGCCCGCCCCCGGCACATCC
TCAGAAGCACAGACACTCGGCCCGGCGCTGGGCGAGGTGGAGGTGAGGGCGGGCGCCAGCGAAC
TCGGAGAGCCGCTCGCACACTCGCGGGCGATCTCAGCCGCCGCCGCCGCCGCCGCACCCGCAGC
AGCACCAGCAGCACCGGCCACAGCAGCTTCCTGCCTCGCTCTCCCCTCCAGAGACTGGCCAAGC
GGGTGTAGCCGCTGGGGAAGGCTCCCGCTTAGGGGAACCCGGAGAAGACTAAGAGCCGGGCGCC
TGACTGCCTACCACTCCGCCTGTCCAGCGGTCGGTACCTCTGCCCGCGTGTGTCCTGGGTGCCG
GCAGACCTGTGTCAGTTTGCGCTTCTGAGATCACACAGCTGCTTAGGGGCCGTGTGATGCCCAG
GGCAATTCTTGGCTTTGGTTATTATTATTATTACTATTATTTTGCGCTTAGCTTTCGGGAAACC
CTCGTGATGTTGTAGGATAAAGGAAATGACACTTTGAGGAACTGAAGAGACCATACACGCGTTT
GGGTTTGAAGAGGAAACTGGTCTCCGCTTCCCCAGCTTGCTCCCTCTTTGCTGATTTCAGGGGC
TATCTCTTAGTGAGGTGGAGATATTCCAGCAAGAATAAAGGTGAAGGCAGACGGACCTCCAGGA
CGCAGGAGGAAAACGCTGATCATTAGAGACCTTTGCAGAAGACACCACAAGGAAGAAAATTAGA
GAGGAAAAACACAAAGACATAATTATACGAGATCCCACCAACCTAGCCCTGGAGAGAGCCTCTC
TGTCAAAAATGGATATGTTTCCTCTCACCTGGATTTTCTTAGCTCTGTACTTTTCGGGACACAA
AGTGAGAAGCCAGCAAGATCCGCCCTGCGGAGGTCGGCTGAATTCCAAAGATGCTGGCTATATC
ACTTCCCCAGGTTACCCCCAGGACTATCCCTCTCACCAGAACTGTGAGTGGGTTGTCTATGCCC
CCGAACCCAACCAGAAGATTGTCCTCAACTTCAACCCTCACTTTGAAATCGAGAAGCATGACTG
CAAGTATGACTTCATTGAGATTCGGGATGGAGACAGTGAGTCAGCTGACCTCCTGGGCAAGCAC
TGTGGGAACATTGCCCCTCCCACCATCATCTCTTCCGGCTCCGTGTTATATATCAAGTTCACAT
CAGACTACGCCCGGCAGGGGGCAGGTTTCTCCCTACGCTATGAGATCTTCAAAACAGGCTCTGA
AGATTGTTCCAAGAACTTTACAAGCCCCAATGGGACCATTGAATCTCCAGGGTTTCCAGAGAAA
TATCCACACAATCTGGACTGTACCTTCACCATCCTGGCCAAACCCAGGATGGAGATCATCCTAC
AGTTCCTGACCTTTGACCTGGAGCATGACCCTCTACAAGTGGGGGAAGGAGACTGTAAATATGA
CTGGCTGGACATCTGGGATGGCATTCCACATGTTGGGCCTCTGATTGGCAAGTACTGTGGGACG
AAAACACCCTCCAAACTCCGCTCGTCCACAGGGATCCTCTCCCTGACCTTTCACACCGACATGG
CCGTGGCCAAGGATGGCTTCTCAGCACGTTACTATTTGGTCCACCAAGAACCACCTGAGAACTT
TCAGTGCAATGCCCCTCTGGGAATGGAGTCTGGCCGGATTGCTAATGAACAGATCAGTGCCTCA
TCCACCTTCTCTGATGGGAGGTGGACTCCTCAACAGAGCAGGCTCCATGGTGATGACAATGGCT
GGACACCCAACGTGGATTCCAACAAGGAGTATCTCCAGGTGGACCTGCGCTTCCTAACCATGCT
CACAGCCATTGCAACACAAGGAGCCATTTCCAGGGAGACCCAGAAGGGCTACTACGTCAAATCG
TACAAGCTGGAAGTCAGCACAAACGGGGAAGATTGGATGGTCTACCGGCATGGCAAAAACCACA
AGGTATTCCAGGCTAACAATGATGCCACCGAGTTGGTTCTGAACAAGCTGCACACGCCGCTGTT
GACTCGTTTCATCAGGATCCGCCCGCAGACGTGGCATTTGGGCATAGCCCTTCGACTGGAGCTC
TTTGGTTGCCGGGTCACAGATGCACCCTGCTCCAACATGCTGGGAATGCTCTCGGGCCTCATTG
CTGATACCCAGATCTCTGCCTCCTCCACCCGAGAGTACCTCTGGAGCCCCAGTGCTGCCCGCCT
GGTTAGCAGCCGCTCTGGCTGGTTCCCTCGGAACCCTCAAGCCCAGCCAGGTGAAGAATGGCTT
CAGGTGGATCTTGGGACACCCAAGACGGTGAAAGGCGTCATCATCCAGGGGGCCCGAGGAGGAG
ACAGTATCACTGCCATGGAAGCCAGGGCATTTGTACGCAAGTTCAAAGTCTCCTACAGCCTAAA
TGGCAAGGACTGGGAATATATCCAGGACCCCAGGACTCAGCAGCCAAAGCTGTTTGAAGGGAAC
ATGCACTATGACACCCCCGACATCCGAAGGTTCGAGCCAGTTCCAGCACAGTACGTGCGGGTAT
ACCCAGAGAGGTGGTCACCAGCGGGCATCGGGATGAGGCTGGAGGTCCTGGGCTGTGACTGGAC
AGACTCAAAGCCCACAGTGGAGACGCTGGGACCCACCGTAAAGAGTGAAGAGACCACCACCCCA
TATCCCATGGATGAGGATGCCACGGAGTGTGGGGAAAACTGCAGCTTTGAGGATGACAAAGATT
TGCAACTTCCTTCAGGATTCAACTGCAACTTTGATTTTCCTGAAGAGACCTGTGGTTGGATGTA
CGACCGTGCCAAGTGGCTGCAGAGTACCTGGATCAGCAGTGCCAACCCTAACGACAGAACGTTT
CCAGATGACAAGAACTTCCTGAAACTACAGAGCGACGGCGGACGAGAGGGCCAGTTTGGGCGGC
TCATCAGCCCACCAGTGCACCTGCCCCGAAGCCCTGTGTGCATGGAGTTCCAATACCAAGCCAT
GGGCGGCCACGGGGTGGCACTGCAGGTGGTTCGGGAAGCCAGACAGGAAAGCAAACTCCTTTGG
GTCATCCGCGAGGACCAGGGCAGCGAGTGGAAGCATGGACGCATTATCCTGCCCAGCTATGACA
TGGAGTATCAGATCGTATTCGAGGGAGTGATCGGGAAAGGGCGATCCGGAGAGATTTCCATCGA
CGACATTCGGATAAGCACCGATGTCCCACTGGAGAACTGCATGGAACCCATCTCGGCTTTTGCA
GGTGAGGATTTTAAAGGGGGCACCCTCCCGCCAGGGACCGAGCCCACAGTGGACACGGTGCCCG
TGCAGCCCATCCCAGCCTACTGGTATTACGTTATGGCGGCCGGGGGTGCCGTGCTGGTGCTGGT
CTCCGTCATCCTGGCCCTGGTGCTCCACTACCACCGGTTCCGCTATGCGGCCAAGAAGACCGAT
CACTCCATCACCTACAAAACCTCCCACTACACCAACGGGACCCCTCTGGCAGTCGAGCCCACCC
TAACCATTAAGCTAGAGCAAGAGCGGGGCTCGCACTGCTGAGGGCCGAAGCAGGAACAGCGCCC
CCCAAAAAACCCAAGAAAGACTGCAAACACGTTGCCTCGATTTTGCACTTTTTTTCTCCTTGCC
TAGTCTCTGCGTGAACCCTCAGACATCTCTCTCCAGAGTCCCCAACCCTGAGCGCTCTTATCTA
GCCCCCACCATTCTCTGTGGTCCTCAGTTCCCGTTTCTCCTTGCTCTGATATTGTTTGTTTTAA
CATTATCTTTCCTTTTTATTCTTTCCTTTTTAATCTTCTCTCTTTTATTCCTTTCTCTCCCACC
CCCTCTTTTCTAATGATTTTAAACCCAACTCAAATGCTGCATCTGGAATCCCAGAAGAGACCCG
CCCCTAAGCACTTCACAACCCAAGGCCCTGTTGGTTTTGTTCCAGAGACAGGCCCTGTTGATTT
TTCCCCTTGCCTTATCCCATCCCTTCTCTCCTGGGCAGGCTGCCAGGTGTCTTGAGGGGAACCT
GGTCCTGTATGTATGTACACAGTACACTCCCATGTGAAGAGGGGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGGATTTGTGAGAGAGAGACTGATTCACT
GTGGAGGGGGGGAGTGTGTGGGTGTGTGTAGAGAGGGGTCCCTTCCCTCTTGTGTTACTTCTTC
TGGGGTACTTTTCAAGAAAATAATATACTGTACACATTTTGTTTACTTGGAGAAGAGATTGGAG
CTTTTTTTGTTGCCTTATCTAGCTCTGGCTGGGTTTCTGTTGGCTGTCATTGTCATCTCCAGGT
ACCTAGAAAAATAGAGGCCATTCGGAATACAATGTGGCTGCACCCTTCCTTATCCCCTTCCCAA
GTCACCCGACCCAAGACTATGGTTCCTCCAGTGTACTCAGACATGACCCCCTTTGTTGTGTTTC
CCGGTGTCTTTGAAGTCACAAGATAACAGCCATTGGGTGCAAGGAGTCATCTCTACTTCCAGCC
CTGAAGCAAATGTGTCTCATGTTGCCTTACAAAAAGAAAAAAAGAAAAAAAAAAAGAAGAGGAA
TAAAAAGTTCATAATGAATGTTTAGCTCTGACGGTCCAGTTGTGGAATAAGTCATAAAGAATAA
CACACCTGGGGTGATGTAAACTCAGTAGTCTGTTTTAATTGCAAGCAGGGGGGCACGATAGGAG
GGAGGAGATGGAAAGACCCAAATGTTGTCTCCTCACCCCCCAGGGCATCATTGCATTGAGCCTA
ACGTGGGATAGGGTTGAGGAAGAAGGTATTCTTTGGTATTATTTTGGTCATTGTAATAGCATTT
GTAAAATATGAGGGAAGGGGGTTTATTTGCTTTCCTTTCATGGTGTTAATGTGTGCCTGAATCT
ATAGCTTCTGAAGTATGTGGCTTTCCTCCTGACTTTGTTAAATATTATGAGAAAATAGAAAGGA
ATCATTTGTTGAAATGAACCCACGTGTTGCCGGTTAAAGCACTAGGGGCATCTGGCTAATACAC
CCCAAAAGGCTGCTCTGACATCGGCAGCACTAGCACGGGCAGAGAGAAGATGCTGTGGGAAAGG
TCCACCCGTAGCTGCCTACATTTCCTCCCCGAAACTATCCTCTGGGAGAGATGTTAGAGAGAAG
TTGCCCAATGATACTGCACTAAGGCTGCATTAAATAGCAAAGTCACTTCCGTCGCAACAAAGTG
TCTATTTGAAGATTCCAAGTATACCAGGCCTCAGTCTTGAAGCCATTTGTTTTCTACTTTCCAG
CTAAAAAAGCTTCTTGGAAAGTGAACAATTCTCTCAAGATGGTTGCCTGGTCACATGATTCTCC
AGACACCTTCTAAGAACAAAATACTAATGATTCTTTTATTTTATTCTTTATTTTTTTATTTATT
TTTATTGCTTGGGAGAGAGCCGTTCAGCATTCTGTTCAGCATTCTTGCAGAGTAGCCAGATTGG
TCCCTCCAGCACACTCTCAGCTTTTGCATCTGGTTCCTTTCATCCTCCGGAAAGGACACTGCTC
TCCCACTCTTACTCTGTTTCAAAGAGCTATTCTGTCTCAACTACAGCAGCCCTGCCAAGAAAAG
AAAAGATGAAAGGCTAGTGTGTGGCTACCTTGAGGTGTCCTACCTCAGCGGAAGATGGAGAAGG
AAGGGTGAGCTCGAGGTGGGCAGCAGCCCTGAGTGCTGAGAGCACCGTGCCTGTCACCAAGGGT
TTTTGTTGTTGTTGTTGTTGTTGTTGTTTAAACAGAGTTGTTTATTCACCACTAGCTGAGCATT
TAGGGCCAGTCATTCCTTGCAAATGATTGACATTCTTACAGGTGCCCTGTGGAAACATCAGAAA
ACCACAGCTAGAAAATCAATCCAGTATAGCAAAGAAAATGGTGGCCACTTTGTGAACTTGCTCT
ATGCTCATCTGATACCCCATGTGGCATCATCTTCATGCACATGTCACAGATGAGAAGATAGTGG
TGAATCCCATGATACCTTCAGCCAGGACTCATGCTTAAACACTCTTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCTCCCAACCCCCTTTCTCTCCTGCTTCCA
ACTCCAGCACCTTTCATAGTATTATCTAAAAGGGGCAGCTCATGTGTAAAATGCCATGCCTTGA
TGCTTTAGAAAGCAAAATTCTATATCCTGTTAGGGAGGAAAGCGGCACTCTCTTCTAAGAAAAC
TGGACTGGACAGATGAATACGTGCATGCACCAGTGTAGCGTTGCTTCTCAGAAACAAAGCAGTG
GTGGCAACTGTTAAAATGTGGATGAGTGTTTGAATGAGGTGAAGGGCCAGCTGGGCTAGAAAGC
ATTCGCCTTACTAGAGATCTCACAAGAACCCTTCCTTGAGTGTGCTAGCAGCTGCTGTCTCCTA
TTGCTGGCAAAAAGCAGGCAAAGAAAAACAAAATGAAACAAGCAGAGCATTGCCATTGACAAAC
AAGATGCCCAAAGTGAAGTCATCCCTTCCCCGTCCCACTGCTTTTGATTAAAACCATAATCAGA
GATCCAGTAATGTTTTTGAGGTTGGTGTCCCATCTTTTAAAAGACCCCTATCTTTAAAATAAAA
ACTAGCAGGCAAGCAAACACCTAAAAGGTCAAAATCTACCAAAGAACGACAAAACAAGAAAACC
TAAAGATTTTTACTTCCTGTTCTTATCCCCTCCCTCTAACTGTGACACTCTTTGCATTACTCAG
TTGCCTGTGTGTCAAAATAACTTGTGGATGTTGGAAACTATTTGAAAATGTATTGTGTGGAATG
TAATAAAATGATATTTTTATACAAA

hide sequence

RefSeq Acc Id:

XM_006245042 ⟹ XP_006245104

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	9	64,122,815 - 64,219,510 (+)	NCBI
Rnor_6.0	9	69,496,875 - 69,593,598 (+)	NCBI
Rnor_5.0	9	69,307,221 - 69,420,379 (+)	NCBI

Sequence:

show sequence

GAGCCGGAGGGGAGACAGAGGAGGCGAGCGAGGCACCAGCCCGCAGCCCGCCCCCGGCACATCC
TCAGAAGCACAGACACTCGGCCCGGCGCTGGGCGAGGTGGAGGTGAGGGCGGGCGCCAGCGAAC
TCGGAGAGCCGCTCGCACACTCGCGGGCGATCTCAGCCGCCGCCGCCGCCGCCGCACCCGCAGC
AGCACCAGCAGCACCGGCCACAGCAGCTTCCTGCCTCGCTCTCCCCTCCAGAGACTGGCCAAGC
GGGTGTAGCCGCTGGGGAAGGCTCCCGCTTAGGGGAACCCGGAGAAGACTAAGAGCCGGGCGCC
TGACTGCCTACCACTCCGCCTGTCCAGCGGTCGGTACCTCTGCCCGCGTGTGTCCTGGGTGCCG
GCAGACCTGTGTCAGTTTGCGCTTCTGAGATCACACAGCTGCTTAGGGGCCGTGTGATGCCCAG
GGCAATTCTTGGCTTTGGTTATTATTATTATTACTATTATTTTGCGCTTAGCTTTCGGGAAACC
CTCGTGATGTTGTAGGATAAAGGAAATGACACTTTGAGGAACTGAAGAGACCATACACGCGTTT
GGGTTTGAAGAGGAAACTGGTCTCCGCTTCCCCAGCTTGCTCCCTCTTTGCTGATTTCAGGGGC
TATCTCTTAGTGAGGTGGAGATATTCCAGCAAGAATAAAGGTGAAGGCAGACGGACCTCCAGGA
CGCAGGAGGAAAACGCTGATCATTAGAGACCTTTGCAGAAGACACCACAAGGAAGAAAATTAGA
GAGGAAAAACACAAAGACATAATTATACGAGATCCCACCAACCTAGCCCTGGAGAGAGCCTCTC
TGTCAAAAATGGATATGTTTCCTCTCACCTGGATTTTCTTAGCTCTGTACTTTTCGGGACACAA
AGTGAGAAGCCAGCAAGATCCGCCCTGCGGAGGTCGGCTGAATTCCAAAGATGCTGGCTATATC
ACTTCCCCAGGTTACCCCCAGGACTATCCCTCTCACCAGAACTGTGAGTGGGTTGTCTATGCCC
CCGAACCCAACCAGAAGATTGTCCTCAACTTCAACCCTCACTTTGAAATCGAGAAGCATGACTG
CAAGTATGACTTCATTGAGATTCGGGATGGAGACAGTGAGTCAGCTGACCTCCTGGGCAAGCAC
TGTGGGAACATTGCCCCTCCCACCATCATCTCTTCCGGCTCCGTGTTATATATCAAGTTCACAT
CAGACTACGCCCGGCAGGGGGCAGGTTTCTCCCTACGCTATGAGATCTTCAAAACAGGCTCTGA
AGATTGTTCCAAGAACTTTACAAGCCCCAATGGGACCATTGAATCTCCAGGGTTTCCAGAGAAA
TATCCACACAATCTGGACTGTACCTTCACCATCCTGGCCAAACCCAGGATGGAGATCATCCTAC
AGTTCCTGACCTTTGACCTGGAGCATGACCCTCTACAAGTGGGGGAAGGAGACTGTAAATATGA
CTGGCTGGACATCTGGGATGGCATTCCACATGTTGGGCCTCTGATTGGCAAGTACTGTGGGACG
AAAACACCCTCCAAACTCCGCTCGTCCACAGGGATCCTCTCCCTGACCTTTCACACCGACATGG
CCGTGGCCAAGGATGGCTTCTCAGCACGTTACTATTTGGTCCACCAAGAACCACCTGAGAACTT
TCAGTGCAATGCCCCTCTGGGAATGGAGTCTGGCCGGATTGCTAATGAACAGATCAGTGCCTCA
TCCACCTTCTCTGATGGGAGGTGGACTCCTCAACAGAGCAGGCTCCATGGTGATGACAATGGCT
GGACACCCAACGTGGATTCCAACAAGGAGTATCTCCAGGTGGACCTGCGCTTCCTAACCATGCT
CACAGCCATTGCAACACAAGGAGCCATTTCCAGGGAGACCCAGAAGGGCTACTACGTCAAATCG
TACAAGCTGGAAGTCAGCACAAACGGGGAAGATTGGATGGTCTACCGGCATGGCAAAAACCACA
AGGTATTCCAGGCTAACAATGATGCCACCGAGTTGGTTCTGAACAAGCTGCACACGCCGCTGTT
GACTCGTTTCATCAGGATCCGCCCGCAGACGTGGCATTTGGGCATAGCCCTTCGACTGGAGCTC
TTTGGTTGCCGGGTCACAGATGCACCCTGCTCCAACATGCTGGGAATGCTCTCGGGCCTCATTG
CTGATACCCAGATCTCTGCCTCCTCCACCCGAGAGTACCTCTGGAGCCCCAGTGCTGCCCGCCT
GGTTAGCAGCCGCTCTGGCTGGTTCCCTCGGAACCCTCAAGCCCAGCCAGGTGAAGAATGGCTT
CAGGTGGATCTTGGGACACCCAAGACGGTGAAAGGCGTCATCATCCAGGGGGCCCGAGGAGGAG
ACAGTATCACTGCCATGGAAGCCAGGGCATTTGTACGCAAGTTCAAAGTCTCCTACAGCCTAAA
TGGCAAGGACTGGGAATATATCCAGGACCCCAGGACTCAGCAGCCAAAGCTGTTTGAAGGGAAC
ATGCACTATGACACCCCCGACATCCGAAGGTTCGAGCCAGTTCCAGCACAGTACGTGCGGGTAT
ACCCAGAGAGGTGGTCACCAGCGGGCATCGGGATGAGGCTGGAGGTCCTGGGCTGTGACTGGAC
AGACTCAAAGCCCACAGTGGAGACGCTGGGACCCACCGTAAAGAGTGAAGAGACCACCACCCCA
TATCCCATGGATGAGGATGCCACGGAGTGTGGGGAAAACTGCAGCTTTGAGGATGACAAAGATT
TGCAACTTCCTTCAGGATTCAACTGCAACTTTGATTTTCCTGAAGAGACCTGTGGTTGGATGTA
CGACCGTGCCAAGTGGCTGCAGAGTACCTGGATCAGCAGTGCCAACCCTAACGACAGAACGTTT
CCAGATGACAAGAACTTCCTGAAACTACAGAGCGACGGCGGACGAGAGGGCCAGTTTGGGCGGC
TCATCAGCCCACCAGTGCACCTGCCCCGAAGCCCTGTGTGCATGGAGTTCCAATACCAAGCCAT
GGGCGGCCACGGGGTGGCACTGCAGGTGGTTCGGGAAGCCAGACAGGAAAGCAAACTCCTTTGG
GTCATCCGCGAGGACCAGGGCAGCGAGTGGAAGCATGGACGCATTATCCTGCCCAGCTATGACA
TGGAGTATCAGATCGTATTCGAGGGAGTGATCGGGAAAGGGCGATCCGGAGAGATTTCCATCGA
CGACATTCGGATAAGCACCGATGTCCCACTGGAGAACTGCATGGAACCCATCTCGGCTTTTGCA
GGGGGCACCCTCCCGCCAGGGACCGAGCCCACAGTGGACACGGTGCCCGTGCAGCCCATCCCAG
CCTACTGGTATTACGTTATGGCGGCCGGGGGTGCCGTGCTGGTGCTGGTCTCCGTCATCCTGGC
CCTGGTGCTCCACTACCACCGGTTCCGCTATGCGGCCAAGAAGACCGATCACTCCATCACCTAC
AAAACCTCCCACTACACCAACGGGACCCCTCTGGCAGTCGAGCCCACCCTAACCATTAAGCTAG
AGCAAGAGCGGGGCTCGCACTGCTGAGGGCCGAAGCAGGAACAGCGCCCCCCAAAAAACCCAAG
AAAGACTGCAAACACGTTGCCTCGATTTTGCACTTTTTTTCTCCTTGCCTAGTCTCTGCGTGAA
CCCTCAGACATCTCTCTCCAGAGTCCCCAACCCTGAGCGCTCTTATCTAGCCCCCACCATTCTC
TGTGGTCCTCAGTTCCCGTTTCTCCTTGCTCTGATATTGTTTGTTTTAACATTATCTTTCCTTT
TTATTCTTTCCTTTTTAATCTTCTCTCTTTTATTCCTTTCTCTCCCACCCCCTCTTTTCTAATG
ATTTTAAACCCAACTCAAATGCTGCATCTGGAATCCCAGAAGAGACCCGCCCCTAAGCACTTCA
CAACCCAAGGCCCTGTTGGTTTTGTTCCAGAGACAGGCCCTGTTGATTTTTCCCCTTGCCTTAT
CCCATCCCTTCTCTCCTGGGCAGGCTGCCAGGTGTCTTGAGGGGAACCTGGTCCTGTATGTATG
TACACAGTACACTCCCATGTGAAGAGGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTTGGATTTGTGAGAGAGAGACTGATTCACTGTGGAGGGGGGGAGT
GTGTGGGTGTGTGTAGAGAGGGGTCCCTTCCCTCTTGTGTTACTTCTTCTGGGGTACTTTTCAA
GAAAATAATATACTGTACACATTTTGTTTACTTGGAGAAGAGATTGGAGCTTTTTTTGTTGCCT
TATCTAGCTCTGGCTGGGTTTCTGTTGGCTGTCATTGTCATCTCCAGGTACCTAGAAAAATAGA
GGCCATTCGGAATACAATGTGGCTGCACCCTTCCTTATCCCCTTCCCAAGTCACCCGACCCAAG
ACTATGGTTCCTCCAGTGTACTCAGACATGACCCCCTTTGTTGTGTTTCCCGGTGTCTTTGAAG
TCACAAGATAACAGCCATTGGGTGCAAGGAGTCATCTCTACTTCCAGCCCTGAAGCAAATGTGT
CTCATGTTGCCTTACAAAAAGAAAAAAAGAAAAAAAAAAAGAAGAGGAATAAAAAGTTCATAAT
GAATGTTTAGCTCTGACGGTCCAGTTGTGGAATAAGTCATAAAGAATAACACACCTGGGGTGAT
GTAAACTCAGTAGTCTGTTTTAATTGCAAGCAGGGGGGCACGATAGGAGGGAGGAGATGGAAAG
ACCCAAATGTTGTCTCCTCACCCCCCAGGGCATCATTGCATTGAGCCTAACGTGGGATAGGGTT
GAGGAAGAAGGTATTCTTTGGTATTATTTTGGTCATTGTAATAGCATTTGTAAAATATGAGGGA
AGGGGGTTTATTTGCTTTCCTTTCATGGTGTTAATGTGTGCCTGAATCTATAGCTTCTGAAGTA
TGTGGCTTTCCTCCTGACTTTGTTAAATATTATGAGAAAATAGAAAGGAATCATTTGTTGAAAT
GAACCCACGTGTTGCCGGTTAAAGCACTAGGGGCATCTGGCTAATACACCCCAAAAGGCTGCTC
TGACATCGGCAGCACTAGCACGGGCAGAGAGAAGATGCTGTGGGAAAGGTCCACCCGTAGCTGC
CTACATTTCCTCCCCGAAACTATCCTCTGGGAGAGATGTTAGAGAGAAGTTGCCCAATGATACT
GCACTAAGGCTGCATTAAATAGCAAAGTCACTTCCGTCGCAACAAAGTGTCTATTTGAAGATTC
CAAGTATACCAGGCCTCAGTCTTGAAGCCATTTGTTTTCTACTTTCCAGCTAAAAAAGCTTCTT
GGAAAGTGAACAATTCTCTCAAGATGGTTGCCTGGTCACATGATTCTCCAGACACCTTCTAAGA
ACAAAATACTAATGATTCTTTTATTTTATTCTTTATTTTTTTATTTATTTTTATTGCTTGGGAG
AGAGCCGTTCAGCATTCTGTTCAGCATTCTTGCAGAGTAGCCAGATTGGTCCCTCCAGCACACT
CTCAGCTTTTGCATCTGGTTCCTTTCATCCTCCGGAAAGGACACTGCTCTCCCACTCTTACTCT
GTTTCAAAGAGCTATTCTGTCTCAACTACAGCAGCCCTGCCAAGAAAAGAAAAGATGAAAGGCT
AGTGTGTGGCTACCTTGAGGTGTCCTACCTCAGCGGAAGATGGAGAAGGAAGGGTGAGCTCGAG
GTGGGCAGCAGCCCTGAGTGCTGAGAGCACCGTGCCTGTCACCAAGGGTTTTTGTTGTTGTTGT
TGTTGTTGTTGTTTAAACAGAGTTGTTTATTCACCACTAGCTGAGCATTTAGGGCCAGTCATTC
CTTGCAAATGATTGACATTCTTACAGGTGCCCTGTGGAAACATCAGAAAACCACAGCTAGAAAA
TCAATCCAGTATAGCAAAGAAAATGGTGGCCACTTTGTGAACTTGCTCTATGCTCATCTGATAC
CCCATGTGGCATCATCTTCATGCACATGTCACAGATGAGAAGATAGTGGTGAATCCCATGATAC
CTTCAGCCAGGACTCATGCTTAAACACTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCCTCTCCCAACCCCCTTTCTCTCCTGCTTCCAACTCCAGCACCTTTC
ATAGTATTATCTAAAAGGGGCAGCTCATGTGTAAAATGCCATGCCTTGATGCTTTAGAAAGCAA
AATTCTATATCCTGTTAGGGAGGAAAGCGGCACTCTCTTCTAAGAAAACTGGACTGGACAGATG
AATACGTGCATGCACCAGTGTAGCGTTGCTTCTCAGAAACAAAGCAGTGGTGGCAACTGTTAAA
ATGTGGATGAGTGTTTGAATGAGGTGAAGGGCCAGCTGGGCTAGAAAGCATTCGCCTTACTAGA
GATCTCACAAGAACCCTTCCTTGAGTGTGCTAGCAGCTGCTGTCTCCTATTGCTGGCAAAAAGC
AGGCAAAGAAAAACAAAATGAAACAAGCAGAGCATTGCCATTGACAAACAAGATGCCCAAAGTG
AAGTCATCCCTTCCCCGTCCCACTGCTTTTGATTAAAACCATAATCAGAGATCCAGTAATGTTT
TTGAGGTTGGTGTCCCATCTTTTAAAAGACCCCTATCTTTAAAATAAAAACTAGCAGGCAAGCA
AACACCTAAAAGGTCAAAATCTACCAAAGAACGACAAAACAAGAAAACCTAAAGATTTTTACTT
CCTGTTCTTATCCCCTCCCTCTAACTGTGACACTCTTTGCATTACTCAGTTGCCTGTGTGTCAA
AATAACTTGTGGATGTTGGAAACTATTTGAAAATGTATTGTGTGGAATGTAATAAAATGATATT
TTTATACAAA

hide sequence

RefSeq Acc Id:

XM_008767137 ⟹ XP_008765359

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	9	64,122,815 - 64,238,007 (+)	NCBI
Rnor_6.0	9	69,496,876 - 69,609,802 (+)	NCBI

Sequence:

show sequence

AGCCGGAGGGGAGACAGAGGAGGCGAGCGAGGCACCAGCCCGCAGCCCGCCCCCGGCACATCCT
CAGAAGCACAGACACTCGGCCCGGCGCTGGGCGAGGTGGAGGTGAGGGCGGGCGCCAGCGAACT
CGGAGAGCCGCTCGCACACTCGCGGGCGATCTCAGCCGCCGCCGCCGCCGCCGCACCCGCAGCA
GCACCAGCAGCACCGGCCACAGCAGCTTCCTGCCTCGCTCTCCCCTCCAGAGACTGGCCAAGCG
GGTGTAGCCGCTGGGGAAGGCTCCCGCTTAGGGGAACCCGGAGAAGACTAAGAGCCGGGCGCCT
GACTGCCTACCACTCCGCCTGTCCAGCGGTCGGTACCTCTGCCCGCGTGTGTCCTGGGTGCCGG
CAGACCTGTGTCAGTTTGCGCTTCTGAGATCACACAGCTGCTTAGGGGCCGTGTGATGCCCAGG
GCAATTCTTGGCTTTGGTTATTATTATTATTACTATTATTTTGCGCTTAGCTTTCGGGAAACCC
TCGTGATGTTGTAGGATAAAGGAAATGACACTTTGAGGAACTGAAGAGACCATACACGCGTTTG
GGTTTGAAGAGGAAACTGGTCTCCGCTTCCCCAGCTTGCTCCCTCTTTGCTGATTTCAGGGGCT
ATCTCTTAGTGAGGTGGAGATATTCCAGCAAGAATAAAGGTGAAGGCAGACGGACCTCCAGGAC
GCAGGAGGAAAACGCTGATCATTAGAGACCTTTGCAGAAGACACCACAAGGAAGAAAATTAGAG
AGGAAAAACACAAAGACATAATTATACGAGATCCCACCAACCTAGCCCTGGAGAGAGCCTCTCT
GTCAAAAATGGATATGTTTCCTCTCACCTGGATTTTCTTAGCTCTGTACTTTTCGGGACACAAA
GTGAGAAGCCAGCAAGATCCGCCCTGCGGAGGTCGGCTGAATTCCAAAGATGCTGGCTATATCA
CTTCCCCAGGTTACCCCCAGGACTATCCCTCTCACCAGAACTGTGAGTGGGTTGTCTATGCCCC
CGAACCCAACCAGAAGATTGTCCTCAACTTCAACCCTCACTTTGAAATCGAGAAGCATGACTGC
AAGTATGACTTCATTGAGATTCGGGATGGAGACAGTGAGTCAGCTGACCTCCTGGGCAAGCACT
GTGGGAACATTGCCCCTCCCACCATCATCTCTTCCGGCTCCGTGTTATATATCAAGTTCACATC
AGACTACGCCCGGCAGGGGGCAGGTTTCTCCCTACGCTATGAGATCTTCAAAACAGGCTCTGAA
GATTGTTCCAAGAACTTTACAAGCCCCAATGGGACCATTGAATCTCCAGGGTTTCCAGAGAAAT
ATCCACACAATCTGGACTGTACCTTCACCATCCTGGCCAAACCCAGGATGGAGATCATCCTACA
GTTCCTGACCTTTGACCTGGAGCATGACCCTCTACAAGTGGGGGAAGGAGACTGTAAATATGAC
TGGCTGGACATCTGGGATGGCATTCCACATGTTGGGCCTCTGATTGGCAAGTACTGTGGGACGA
AAACACCCTCCAAACTCCGCTCGTCCACAGGGATCCTCTCCCTGACCTTTCACACCGACATGGC
CGTGGCCAAGGATGGCTTCTCAGCACGTTACTATTTGGTCCACCAAGAACCACCTGAGAACTTT
CAGTGCAATGCCCCTCTGGGAATGGAGTCTGGCCGGATTGCTAATGAACAGATCAGTGCCTCAT
CCACCTTCTCTGATGGGAGGTGGACTCCTCAACAGAGCAGGCTCCATGGTGATGACAATGGCTG
GACACCCAACGTGGATTCCAACAAGGAGTATCTCCAGGTGGACCTGCGCTTCCTAACCATGCTC
ACAGCCATTGCAACACAAGGAGCCATTTCCAGGGAGACCCAGAAGGGCTACTACGTCAAATCGT
ACAAGCTGGAAGTCAGCACAAACGGGGAAGATTGGATGGTCTACCGGCATGGCAAAAACCACAA
GGTATTCCAGGCTAACAATGATGCCACCGAGTTGGTTCTGAACAAGCTGCACACGCCGCTGTTG
ACTCGTTTCATCAGGATCCGCCCGCAGACGTGGCATTTGGGCATAGCCCTTCGACTGGAGCTCT
TTGGTTGCCGGGTCACAGATGCACCCTGCTCCAACATGCTGGGAATGCTCTCGGGCCTCATTGC
TGATACCCAGATCTCTGCCTCCTCCACCCGAGAGTACCTCTGGAGCCCCAGTGCTGCCCGCCTG
GTTAGCAGCCGCTCTGGCTGGTTCCCTCGGAACCCTCAAGCCCAGCCAGGTGAAGAATGGCTTC
AGGTGGATCTTGGGACACCCAAGACGGTGAAAGGCGTCATCATCCAGGGGGCCCGAGGAGGAGA
CAGTATCACTGCCATGGAAGCCAGGGCATTTGTACGCAAGTTCAAAGTCTCCTACAGCCTAAAT
GGCAAGGACTGGGAATATATCCAGGACCCCAGGACTCAGCAGCCAAAGCTGTTTGAAGGGAACA
TGCACTATGACACCCCCGACATCCGAAGGTTCGAGCCAGTTCCAGCACAGTACGTGCGGGTATA
CCCAGAGAGGTGGTCACCAGCGGGCATCGGGATGAGGCTGGAGGTCCTGGGCTGTGACTGGACA
GACTCAAAGCCCACAGTGGAGACGCTGGGACCCACCGTAAAGAGTGAAGAGACCACCACCCCAT
ATCCCATGGATGAGGATGCCACGGAGTGTGGGGAAAACTGCAGCTTTGAGGATGACAAAGATTT
GCAACTTCCTTCAGGATTCAACTGCAACTTTGATTTTCCTGAAGAGACCTGTGGTTGGATGTAC
GACCGTGCCAAGTGGCTGCAGAGTACCTGGATCAGCAGTGCCAACCCTAACGACAGAACGTTTC
CAGATGACAAGAACTTCCTGAAACTACAGAGCGACGGCGGACGAGAGGGCCAGTTTGGGCGGCT
CATCAGCCCACCAGTGCACCTGCCCCGAAGCCCTGTGTGCATGGAGTTCCAATACCAAGCCATG
GGCGGCCACGGGGTGGCACTGCAGGTGGTTCGGGAAGCCAGACAGGAAAGCAAACTCCTTTGGG
TCATCCGCGAGGACCAGGGCAGCGAGTGGAAGCATGGACGCATTATCCTGCCCAGCTATGACAT
GGAGTATCAGATCGTATTCGAGGGAGTGATCGGGAAAGGGCGATCCGGAGAGATTTCCATCGAC
GACATTCGGATAAGCACCGATGTCCCACTGGAGAACTGCATGGAACCCATCTCGGCTTTTGCAG
GTGAGGATTTTAAAGATGACTATGAAGGAGATTGGAACAACTCTTCCTCTACCTCAGGGGCTGG
TAGTCCCTCATCTGGCAAAGAAAAGAGCTGGCTGTACACACTGGACCCCATCCTGATCACCATC
ATTGCCATGAGCTCGCTGGGTGTCCTGCTGGGGGCCACCTGTGCGGGCCTCCTCCTCTACTGCA
CCTGCTCCTACTCTGGCCTGAGTTCGAGAAGCTGCACCACACTGGAGAACTACAACTTTGAGCT
CTACGACGGCCTCAAGCACAAGGTCAAGATCAATCACCAGAAGTGCTGCTCGGAGGCATGACCG
ATTGTGTCTGAATCGCTTCTGGCGTTTCATTCCAGCGAGAGGGGCTAGGGAAGATTACTTTTTT
TTTCCTTTGGAAACTGAATGCCATAATCTGGATCAAACCGATCCAGAATACTGAAGGTATGGAC
AGAACAGACAGGCCAGTCTAGGAGAAAGGAAGATGCAGCCGTGAAGGGGATCATTGCCCACAGA
GGACAGTGGTGGTCAAGTTAATGCAGGAACCGGGCCCGTGTTCTCTGCCGGGACACAGACAGGA
GCGCATCTCCTCGGAGTCAACAGTTCTGTTTCGCTTGTGGGTTTGTTATGATTATGATTGCTAT
TGTTATATTTTATTCTTATTTTTTGATCTGTGAGCAACTCAAAGAGGCAGAAGAGGATGGCTTA
TCTGGGGCAGAAAGTGGAGAGATCATCACTGGTCTCCATATCTCTTTCTTGAAAAGCGAAGGGG
CTTTTCAGCCCTTCTGTCCTGAGAAACGGAACCTAAGAAACAAAAGCTTAGCTCACCCTCAGAT
GGCCTCCCAACTCAAGAGACTTGCTGGGGAGTGTTCAGACCCTGCCAGCCAACCCTGGGAGCTG
CCATTTCCGGTCCTAGCATATTGAAGTAGGGTGTTATTGCCTTTAACTTTTTTTAATCCAGGGG
AAGATTGCCATTTTAGGGTCAGCTCGAACAATTTTTTCTTATAAGATTTTAAGTAAACCAGAAC
AGAAA

hide sequence

RefSeq Acc Id:

XM_039084243 ⟹ XP_038940171

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	9	64,122,816 - 64,213,828 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_110496	(Get FASTA)	NCBI Sequence Viewer
	XP_006245101	(Get FASTA)	NCBI Sequence Viewer
	XP_006245102	(Get FASTA)	NCBI Sequence Viewer
	XP_006245103	(Get FASTA)	NCBI Sequence Viewer
	XP_006245104	(Get FASTA)	NCBI Sequence Viewer
	XP_008765359	(Get FASTA)	NCBI Sequence Viewer
	XP_038940171	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAC53338	(Get FASTA)	NCBI Sequence Viewer
	EDL98911	(Get FASTA)	NCBI Sequence Viewer
	EDL98912	(Get FASTA)	NCBI Sequence Viewer
	EDL98913	(Get FASTA)	NCBI Sequence Viewer
	O35276	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:	NP_110496 ⟸ NM_030869
- Peptide Label:	precursor
- UniProtKB:	O35276 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MDMFPLTWIFLALYFSGHKVRSQQDPPCGGRLNSKDAGYITSPGYPQDYPSHQNCEWVVYAPEP NQKIVLNFNPHFEIEKHDCKYDFIEIRDGDSESADLLGKHCGNIAPPTIISSGSVLYIKFTSDY ARQGAGFSLRYEIFKTGSEDCSKNFTSPNGTIESPGFPEKYPHNLDCTFTILAKPRMEIILQFL TFDLEHDPLQVGEGDCKYDWLDIWDGIPHVGPLIGKYCGTKTPSKLRSSTGILSLTFHTDMAVA KDGFSARYYLVHQEPPENFQCNAPLGMESGRIANEQISASSTFSDGRWTPQQSRLHGDDNGWTP NVDSNKEYLQVDLRFLTMLTAIATQGAISRETQKGYYVKSYKLEVSTNGEDWMVYRHGKNHKVF QANNDATELVLNKLHTPLLTRFIRIRPQTWHLGIALRLELFGCRVTDAPCSNMLGMLSGLIADT QISASSTREYLWSPSAARLVSSRSGWFPRNPQAQPGEEWLQVDLGTPKTVKGVIIQGARGGDSI TAMEARAFVRKFKVSYSLNGKDWEYIQDPRTQQPKLFEGNMHYDTPDIRRFEPVPAQYVRVYPE RWSPAGIGMRLEVLGCDWTDSKPTVETLGPTVKSEETTTPYPMDEDATECGENCSFEDDKDLQL PSGFNCNFDFPEETCGWMYDRAKWLQSTWISSANPNDRTFPDDKNFLKLQSDGGREGQFGRLIS PPVHLPRSPVCMEFQYQAMGGHGVALQVVREARQESKLLWVIREDQGSEWKHGRIILPSYDMEY QIVFEGVIGKGRSGEISIDDIRISTDVPLENCMEPISAFAVDIPEIHGGEGYEDEIDDDYEGDW NNSSSTSGAGSPSSGKEKSWLYTLDPILITIIAMSSLGVLLGATCAGLLLYCTCSYSGLSSRSC TTLENYNFELYDGLKHKVKINHQKCCSEA hide sequence

RefSeq Acc Id:

XP_006245101 ⟸ XM_006245039

- Peptide Label:

isoform X1

- Sequence:

show sequence

MDMFPLTWIFLALYFSGHKVRSQQDPPCGGRLNSKDAGYITSPGYPQDYPSHQNCEWVVYAPEP
NQKIVLNFNPHFEIEKHDCKYDFIEIRDGDSESADLLGKHCGNIAPPTIISSGSVLYIKFTSDY
ARQGAGFSLRYEIFKTGSEDCSKNFTSPNGTIESPGFPEKYPHNLDCTFTILAKPRMEIILQFL
TFDLEHDPLQVGEGDCKYDWLDIWDGIPHVGPLIGKYCGTKTPSKLRSSTGILSLTFHTDMAVA
KDGFSARYYLVHQEPPENFQCNAPLGMESGRIANEQISASSTFSDGRWTPQQSRLHGDDNGWTP
NVDSNKEYLQVDLRFLTMLTAIATQGAISRETQKGYYVKSYKLEVSTNGEDWMVYRHGKNHKVF
QANNDATELVLNKLHTPLLTRFIRIRPQTWHLGIALRLELFGCRVTDAPCSNMLGMLSGLIADT
QISASSTREYLWSPSAARLVSSRSGWFPRNPQAQPGEEWLQVDLGTPKTVKGVIIQGARGGDSI
TAMEARAFVRKFKVSYSLNGKDWEYIQDPRTQQPKLFEGNMHYDTPDIRRFEPVPAQYVRVYPE
RWSPAGIGMRLEVLGCDWTDSKPTVETLGPTVKSEETTTPYPMDEDATECGENCSFEDDKDLQL
PSGFNCNFDFPEETCGWMYDRAKWLQSTWISSANPNDRTFPDDKNFLKLQSDGGREGQFGRLIS
PPVHLPRSPVCMEFQYQAMGGHGVALQVVREARQESKLLWVIREDQGSEWKHGRIILPSYDMEY
QIVFEGVIGKGRSGEISIDDIRISTDVPLENCMEPISAFAGEDFKVDIPEIHGGEGYEDEIDDD
YEGDWNNSSSTSGAGSPSSGKEKSWLYTLDPILITIIAMSSLGVLLGATCAGLLLYCTCSYSGL
SSRSCTTLENYNFELYDGLKHKVKINHQKCCSEA

hide sequence

RefSeq Acc Id:

XP_006245102 ⟸ XM_006245040

- Peptide Label:

isoform X3

- Sequence:

show sequence

MDMFPLTWIFLALYFSGHKVRSQQDPPCGGRLNSKDAGYITSPGYPQDYPSHQNCEWVVYAPEP
NQKIVLNFNPHFEIEKHDCKYDFIEIRDGDSESADLLGKHCGNIAPPTIISSGSVLYIKFTSDY
ARQGAGFSLRYEIFKTGSEDCSKNFTSPNGTIESPGFPEKYPHNLDCTFTILAKPRMEIILQFL
TFDLEHDPLQVGEGDCKYDWLDIWDGIPHVGPLIGKYCGTKTPSKLRSSTGILSLTFHTDMAVA
KDGFSARYYLVHQEPPENFQCNAPLGMESGRIANEQISASSTFSDGRWTPQQSRLHGDDNGWTP
NVDSNKEYLQVDLRFLTMLTAIATQGAISRETQKGYYVKSYKLEVSTNGEDWMVYRHGKNHKVF
QANNDATELVLNKLHTPLLTRFIRIRPQTWHLGIALRLELFGCRVTDAPCSNMLGMLSGLIADT
QISASSTREYLWSPSAARLVSSRSGWFPRNPQAQPGEEWLQVDLGTPKTVKGVIIQGARGGDSI
TAMEARAFVRKFKVSYSLNGKDWEYIQDPRTQQPKLFEGNMHYDTPDIRRFEPVPAQYVRVYPE
RWSPAGIGMRLEVLGCDWTDSKPTVETLGPTVKSEETTTPYPMDEDATECGENCSFEDDKDLQL
PSGFNCNFDFPEETCGWMYDRAKWLQSTWISSANPNDRTFPDDKNFLKLQSDGGREGQFGRLIS
PPVHLPRSPVCMEFQYQAMGGHGVALQVVREARQESKLLWVIREDQGSEWKHGRIILPSYDMEY
QIVFEGVIGKGRSGEISIDDIRISTDVPLENCMEPISAFADDYEGDWNNSSSTSGAGSPSSGKE
KSWLYTLDPILITIIAMSSLGVLLGATCAGLLLYCTCSYSGLSSRSCTTLENYNFELYDGLKHK
VKINHQKCCSEA

hide sequence

RefSeq Acc Id:

XP_006245103 ⟸ XM_006245041

- Peptide Label:

isoform X4

- Sequence:

show sequence

MDMFPLTWIFLALYFSGHKVRSQQDPPCGGRLNSKDAGYITSPGYPQDYPSHQNCEWVVYAPEP
NQKIVLNFNPHFEIEKHDCKYDFIEIRDGDSESADLLGKHCGNIAPPTIISSGSVLYIKFTSDY
ARQGAGFSLRYEIFKTGSEDCSKNFTSPNGTIESPGFPEKYPHNLDCTFTILAKPRMEIILQFL
TFDLEHDPLQVGEGDCKYDWLDIWDGIPHVGPLIGKYCGTKTPSKLRSSTGILSLTFHTDMAVA
KDGFSARYYLVHQEPPENFQCNAPLGMESGRIANEQISASSTFSDGRWTPQQSRLHGDDNGWTP
NVDSNKEYLQVDLRFLTMLTAIATQGAISRETQKGYYVKSYKLEVSTNGEDWMVYRHGKNHKVF
QANNDATELVLNKLHTPLLTRFIRIRPQTWHLGIALRLELFGCRVTDAPCSNMLGMLSGLIADT
QISASSTREYLWSPSAARLVSSRSGWFPRNPQAQPGEEWLQVDLGTPKTVKGVIIQGARGGDSI
TAMEARAFVRKFKVSYSLNGKDWEYIQDPRTQQPKLFEGNMHYDTPDIRRFEPVPAQYVRVYPE
RWSPAGIGMRLEVLGCDWTDSKPTVETLGPTVKSEETTTPYPMDEDATECGENCSFEDDKDLQL
PSGFNCNFDFPEETCGWMYDRAKWLQSTWISSANPNDRTFPDDKNFLKLQSDGGREGQFGRLIS
PPVHLPRSPVCMEFQYQAMGGHGVALQVVREARQESKLLWVIREDQGSEWKHGRIILPSYDMEY
QIVFEGVIGKGRSGEISIDDIRISTDVPLENCMEPISAFAGEDFKGGTLPPGTEPTVDTVPVQP
IPAYWYYVMAAGGAVLVLVSVILALVLHYHRFRYAAKKTDHSITYKTSHYTNGTPLAVEPTLTI
KLEQERGSHC

hide sequence

RefSeq Acc Id:

XP_006245104 ⟸ XM_006245042

- Peptide Label:

isoform X5

- Sequence:

show sequence

MDMFPLTWIFLALYFSGHKVRSQQDPPCGGRLNSKDAGYITSPGYPQDYPSHQNCEWVVYAPEP
NQKIVLNFNPHFEIEKHDCKYDFIEIRDGDSESADLLGKHCGNIAPPTIISSGSVLYIKFTSDY
ARQGAGFSLRYEIFKTGSEDCSKNFTSPNGTIESPGFPEKYPHNLDCTFTILAKPRMEIILQFL
TFDLEHDPLQVGEGDCKYDWLDIWDGIPHVGPLIGKYCGTKTPSKLRSSTGILSLTFHTDMAVA
KDGFSARYYLVHQEPPENFQCNAPLGMESGRIANEQISASSTFSDGRWTPQQSRLHGDDNGWTP
NVDSNKEYLQVDLRFLTMLTAIATQGAISRETQKGYYVKSYKLEVSTNGEDWMVYRHGKNHKVF
QANNDATELVLNKLHTPLLTRFIRIRPQTWHLGIALRLELFGCRVTDAPCSNMLGMLSGLIADT
QISASSTREYLWSPSAARLVSSRSGWFPRNPQAQPGEEWLQVDLGTPKTVKGVIIQGARGGDSI
TAMEARAFVRKFKVSYSLNGKDWEYIQDPRTQQPKLFEGNMHYDTPDIRRFEPVPAQYVRVYPE
RWSPAGIGMRLEVLGCDWTDSKPTVETLGPTVKSEETTTPYPMDEDATECGENCSFEDDKDLQL
PSGFNCNFDFPEETCGWMYDRAKWLQSTWISSANPNDRTFPDDKNFLKLQSDGGREGQFGRLIS
PPVHLPRSPVCMEFQYQAMGGHGVALQVVREARQESKLLWVIREDQGSEWKHGRIILPSYDMEY
QIVFEGVIGKGRSGEISIDDIRISTDVPLENCMEPISAFAGGTLPPGTEPTVDTVPVQPIPAYW
YYVMAAGGAVLVLVSVILALVLHYHRFRYAAKKTDHSITYKTSHYTNGTPLAVEPTLTIKLEQE
RGSHC

hide sequence

RefSeq Acc Id:

XP_008765359 ⟸ XM_008767137

- Peptide Label:

isoform X2

- Sequence:

show sequence

MDMFPLTWIFLALYFSGHKVRSQQDPPCGGRLNSKDAGYITSPGYPQDYPSHQNCEWVVYAPEP
NQKIVLNFNPHFEIEKHDCKYDFIEIRDGDSESADLLGKHCGNIAPPTIISSGSVLYIKFTSDY
ARQGAGFSLRYEIFKTGSEDCSKNFTSPNGTIESPGFPEKYPHNLDCTFTILAKPRMEIILQFL
TFDLEHDPLQVGEGDCKYDWLDIWDGIPHVGPLIGKYCGTKTPSKLRSSTGILSLTFHTDMAVA
KDGFSARYYLVHQEPPENFQCNAPLGMESGRIANEQISASSTFSDGRWTPQQSRLHGDDNGWTP
NVDSNKEYLQVDLRFLTMLTAIATQGAISRETQKGYYVKSYKLEVSTNGEDWMVYRHGKNHKVF
QANNDATELVLNKLHTPLLTRFIRIRPQTWHLGIALRLELFGCRVTDAPCSNMLGMLSGLIADT
QISASSTREYLWSPSAARLVSSRSGWFPRNPQAQPGEEWLQVDLGTPKTVKGVIIQGARGGDSI
TAMEARAFVRKFKVSYSLNGKDWEYIQDPRTQQPKLFEGNMHYDTPDIRRFEPVPAQYVRVYPE
RWSPAGIGMRLEVLGCDWTDSKPTVETLGPTVKSEETTTPYPMDEDATECGENCSFEDDKDLQL
PSGFNCNFDFPEETCGWMYDRAKWLQSTWISSANPNDRTFPDDKNFLKLQSDGGREGQFGRLIS
PPVHLPRSPVCMEFQYQAMGGHGVALQVVREARQESKLLWVIREDQGSEWKHGRIILPSYDMEY
QIVFEGVIGKGRSGEISIDDIRISTDVPLENCMEPISAFAGEDFKDDYEGDWNNSSSTSGAGSP
SSGKEKSWLYTLDPILITIIAMSSLGVLLGATCAGLLLYCTCSYSGLSSRSCTTLENYNFELYD
GLKHKVKINHQKCCSEA

hide sequence

RefSeq Acc Id:

ENSRNOP00000047206 ⟸ ENSRNOT00000042562

RefSeq Acc Id:	XP_038940171 ⟸ XM_039084243
- Peptide Label:	isoform X6

RefSeq Acc Id:

ENSRNOP00000090812 ⟸ ENSRNOT00000105009

RefSeq Acc Id:

ENSRNOP00000086265 ⟸ ENSRNOT00000119960

RefSeq Acc Id:

ENSRNOP00000094102 ⟸ ENSRNOT00000119267

Protein Domains

CUB F5/8 type C MAM

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-O35276-F1-model_v2	AlphaFold	O35276	1-925	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Strain Variation

Strain Sequence Variants (mRatBN7.2)

ACI/EurMcwi (2019)

Visual

CSV

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

ACI/N (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN-Lx/CubMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/NHsdMcwi (2019)

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CSV

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/NHsdMcwi (2020)

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CSV

TAB

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/SsN (2020)

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CSV

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BUF/N (2020)

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CSV

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BXH2/CubMcwi (2020)

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CSV

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BXH3/CubMcwi (2020)

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CSV

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

DA/OlaHsd (2019)

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CSV

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Envigo
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/DuCrl (2019)

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CSV

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/N (2020)

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CSV

TAB

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/NCrl (2019)

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CSV

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/Stm (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FHH/EurMcwi (2019)

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CSV

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FXLE16/Stm (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FXLE18/Stm (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

GK/FarMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB10/IpcvMcwi (2019)

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CSV

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB2/IpcvMcwi (2019)

Visual

CSV

TAB

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB20/IpcvMcwi (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB31/IpcvMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB4/IpcvMcwi (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LE/Stm (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEW/Crl (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF10A/StmMcwi (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF11/Stm (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF1A/Stm (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF1C/Stm (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF2B/Stm (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF3/Stm (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF4/Stm (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LH/MavRrrcAek (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LL/MavRrrcAek (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LN/MavRrrcAek (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

M520/N (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

M520/NRrrcMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

MR/N (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

MWF/Hsd (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

PVG/Seac (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SHR/OlalpcvMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SHRSP/A3NCrl (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SR/JrHsd (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Envigo
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SS/JrHsdMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WAG/RijCrl (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/N (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/NCrl (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WN/N (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

Damaging Variants

Assembly: Rnor_5.0

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain
9	69347783	69347784	A	G	snv	LEC/Tj (KyushuU)

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:621442	AgrOrtholog
BioCyc Gene	G2FUF-27360	BioCyc
Ensembl Genes	ENSRNOG00000031232	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000047206	ENTREZGENE
	ENSRNOP00000047206.3	UniProtKB/TrEMBL
	ENSRNOP00000086265.1	UniProtKB/TrEMBL
	ENSRNOP00000090812	ENTREZGENE
	ENSRNOP00000090812.1	UniProtKB/TrEMBL
	ENSRNOP00000094102	ENTREZGENE
	ENSRNOP00000094102.1	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000042562	ENTREZGENE
	ENSRNOT00000042562.4	UniProtKB/TrEMBL
	ENSRNOT00000105009	ENTREZGENE
	ENSRNOT00000105009.1	UniProtKB/TrEMBL
	ENSRNOT00000119267	ENTREZGENE
	ENSRNOT00000119267.1	UniProtKB/TrEMBL
	ENSRNOT00000119960.1	UniProtKB/TrEMBL
Gene3D-CATH	2.60.120.290	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro	ConA-like_dom_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	CUB_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	FA58C	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Galactose-bd-like_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	MAM_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Neuropilin	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Neuropilin-2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Neuropilin_C	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Sperma_CUB_dom_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:81527	UniProtKB/Swiss-Prot
NCBI Gene	81527	ENTREZGENE
PANTHER	PTHR46806:SF2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	CUB	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	DUF3481	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	F5_F8_type_C	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	MAM	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Nrp2	PhenoGen
PIRSF	Neuropilin	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PRINTS	MAMDOMAIN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE	CUB	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	FA58C_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	FA58C_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	FA58C_3	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	MAM_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART	CUB	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	FA58C	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	MAM	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF49785	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SSF49854	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SSF49899	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A8I6A5P1_RAT	UniProtKB/TrEMBL
	A0A8I6AF12_RAT	UniProtKB/TrEMBL
	A0A8I6AH16_RAT	UniProtKB/TrEMBL
	A0A8L2UM12_RAT	UniProtKB/TrEMBL
	NRP2_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2004-09-10	Nrp2	neuropilin 2		neuropilin-2	Name updated	1299863	APPROVED
2002-08-07	Nrp2	neuropilin-2			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_regulation	expression upregulated following seizures in mature rats	729118

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

Imported Annotations - PID (archival)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

Imported Annotations - PID (archival)