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Gene: Raph1 (Ras association (RalGDS/AF-6) and pleckstrin homology domains 1) Rattus norvegicus

Analyze

Symbol:

Raph1

Name:

Ras association (RalGDS/AF-6) and pleckstrin homology domains 1

RGD ID:

1308387

Description:

Predicted to be involved in signal transduction. Predicted to act upstream of or within axon extension. Predicted to be located in cell leading edge and nuclear body. Predicted to be active in cytosol and plasma membrane. Orthologous to human RAPH1 (Ras association (RalGDS/AF-6) and pleckstrin homology domains 1); INTERACTS WITH 17beta-estradiol; 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC363239; ras-associated and pleckstrin homology domains-containing protein 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	69,397,272 - 69,484,174 (-)	NCBI		GRCr8
mRatBN7.2	9	61,907,476 - 61,990,170 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	61,907,758 - 61,961,209 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	70,411,407 - 70,492,233 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	75,526,986 - 75,607,814 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	73,845,679 - 73,926,405 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	67,290,004 - 67,370,208 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	67,293,309 - 67,341,341 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	67,104,292 - 67,184,496 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	59,083,429 - 59,165,764 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	9	59,237,947 - 59,320,248 (-)	NCBI
Celera	9	59,337,785 - 59,417,840 (-)	NCBI		Celera
Cytogenetic Map	9	q32	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autoimmune lymphoproliferative syndrome type 2B (ISO)

Autoimmune Lymphoproliferative Syndrome, Type V (ISO)

common variable immunodeficiency 1 (ISO)

COVID-19 (ISO)

Neurodevelopmental Disorders (ISO)

primary pulmonary hypertension (ISO)

prostate cancer (ISO)

Pulmonary Arterial Hypertension (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,1-dichloroethene (ISO)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (EXP)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (EXP)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

2,6-dinitrotoluene (EXP)

4-amino-2,6-dinitrotoluene (EXP)

acetamide (EXP)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

alpha-Zearalanol (EXP)

amitrole (EXP)

amphetamine (EXP)

arsenite(3-) (ISO)

arsenous acid (ISO)

atrazine (EXP)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bortezomib (ISO)

Brodifacoum (EXP)

cadmium atom (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

calcitriol (ISO)

cannabidiol (ISO)

carbon nanotube (ISO)

chloroprene (EXP)

ciguatoxin CTX1B (ISO)

clobetasol (ISO)

cobalt dichloride (EXP)

copper atom (ISO)

copper(0) (ISO)

copper(II) chloride (ISO)

copper(II) sulfate (ISO)

coumarin (ISO)

cyclosporin A (ISO)

DDE (ISO)

diarsenic trioxide (ISO)

dibutyl phthalate (EXP)

dicrotophos (ISO)

dioxygen (ISO)

disodium selenite (ISO)

endosulfan (EXP)

fenvalerate (EXP)

flutamide (EXP)

folic acid (ISO)

glyphosate (EXP)

indometacin (ISO)

iron dichloride (ISO)

isoprenaline (ISO)

lead diacetate (ISO)

leflunomide (ISO)

lipopolysaccharide (ISO)

methapyrilene (EXP)

oxaliplatin (EXP)

paracetamol (EXP,ISO)

PCB138 (ISO)

perfluorooctanoic acid (EXP)

phenobarbital (ISO)

pirinixic acid (ISO)

propiconazole (ISO)

quercetin (ISO)

resveratrol (ISO)

serpentine asbestos (ISO)

silicon dioxide (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

sodium dichromate (EXP)

testosterone (ISO)

tetraphene (ISO)

thiram (ISO)

titanium dioxide (ISO)

topotecan (EXP)

triphenyl phosphate (EXP)

urethane (ISO)

valdecoxib (EXP)

valproic acid (EXP,ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

axon extension (ISO)

biological_process (ND)

signal transduction (IEA)

Cellular Component

cell leading edge (ISO)

cytosol (IBA,ISO)

nuclear body (IEA,ISO)

plasma membrane (IBA,ISO)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
5.	Comprehensive gene review and curation	RGD comprehensive gene curation

Additional References at PubMed

PMID:20417104

Genomics

Comparative Map Data

Raph1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	69,397,272 - 69,484,174 (-)	NCBI		GRCr8
mRatBN7.2	9	61,907,476 - 61,990,170 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	61,907,758 - 61,961,209 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	70,411,407 - 70,492,233 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	75,526,986 - 75,607,814 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	73,845,679 - 73,926,405 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	67,290,004 - 67,370,208 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	67,293,309 - 67,341,341 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	67,104,292 - 67,184,496 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	59,083,429 - 59,165,764 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	9	59,237,947 - 59,320,248 (-)	NCBI
Celera	9	59,337,785 - 59,417,840 (-)	NCBI		Celera
Cytogenetic Map	9	q32	NCBI

RAPH1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	203,433,682 - 203,535,301 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	203,394,345 - 203,535,335 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	204,298,405 - 204,400,024 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	204,006,783 - 204,108,303 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	2	198,053,361 - 198,154,883 (-)	NCBI		Celera
Cytogenetic Map	2	q33.2	NCBI
HuRef	2	196,146,067 - 196,207,516 (-)	NCBI		HuRef
CHM1_1	2	204,305,122 - 204,406,629 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	2	203,915,590 - 204,017,213 (-)	NCBI		T2T-CHM13v2.0

Raph1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	60,509,997 - 60,606,233 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	60,521,451 - 60,606,263 (-)	Ensembl		GRCm39 Ensembl
GRCm38	1	60,471,180 - 60,567,074 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	60,482,292 - 60,567,104 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	60,540,029 - 60,623,609 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	60,426,839 - 60,511,311 (-)	NCBI		MGSCv36	mm8
Celera	1	60,999,032 - 61,082,464 (-)	NCBI		Celera
Cytogenetic Map	1	C2	NCBI
cM Map	1	30.48	NCBI

Raph1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955457	11,394,572 - 11,462,617 (+)	NCBI	ChiLan1.0	ChiLan1.0

RAPH1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	13	106,037,158 - 106,141,217 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2B	106,052,152 - 106,153,555 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2B	90,664,717 - 90,766,088 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2B	208,805,254 - 208,865,624 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2B	208,765,847 - 208,865,624 (-)	Ensembl	panpan1.1		panPan2

RAPH1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	37	12,279,100 - 12,346,546 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	37	13,162,247 - 13,264,028 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	37	12,220,193 - 12,317,047 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	37	12,221,761 - 12,282,736 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	37	12,172,509 - 12,274,245 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	37	12,147,117 - 12,237,334 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	37	12,136,662 - 12,238,466 (-)	NCBI		UU_Cfam_GSD_1.0

Raph1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	160,467,617 - 160,561,432 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936631	108,310 - 196,563 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936631	100,072 - 196,557 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RAPH1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	15	106,900,826 - 106,997,795 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	15	118,228,615 - 118,297,732 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RAPH1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	10	89,191,220 - 89,294,746 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	10	89,192,772 - 89,250,757 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666040	110,085,771 - 110,194,535 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Raph1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624765	12,922,083 - 12,990,363 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624765	12,867,547 - 12,994,605 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Raph1
167 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	105
Count of miRNA genes:	94
Interacting mature miRNAs:	98
Transcripts:	ENSRNOT00000036194
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
7411571	Bw138	Body weight QTL 138	14.3	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	9	32535505	77535505	Rat
11353957	Bmd92	Bone mineral density QTL 92		0.01	tibia mineral mass (VT:1000283)	volumetric bone mineral density (CMO:0001553)	9	46114199	91114199	Rat
631680	Cm11	Cardiac mass QTL 11	3.1	0.00089	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	9	20430519	65430519	Rat
70218	Cm28	Cardiac mass QTL 28	8.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	9	25268044	79271759	Rat
724544	Uae9	Urinary albumin excretion QTL 9	4.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	9	25268044	114175309	Rat
1578760	Cm53	Cardiac mass QTL 53	3.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	9	56771635	101771635	Rat
631643	Bp120	Blood pressure QTL 120	3	0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	22071200	67071200	Rat
12879506	Pur33	Proteinuria QTL 33			urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	9	44649921	89649921	Rat
731164	Uae25	Urinary albumin excretion QTL 25	3.5	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	25661188	100929786	Rat
1598849	Memor17	Memory QTL 17	2.2		exploratory behavior trait (VT:0010471)	difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)	9	49968546	71098346	Rat
10058949	Gmadr5	Adrenal mass QTL 5	2	0.014	adrenal gland mass (VT:0010420)	both adrenal glands wet weight to body weight ratio (CMO:0002411)	9	42791513	87976209	Rat
631656	Bp108	Blood pressure QTL 108	5.97	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	48598251	93598251	Rat
2303170	Bp332	Blood pressure QTL 332	3.73	0.027	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	9	55847841	77026453	Rat
8662828	Vetf6	Vascular elastic tissue fragility QTL 6	3.9		artery integrity trait (VT:0010639)	patent ductus arteriosus score (CMO:0002566)	9	36962359	92058970	Rat
61352	Bp34	Blood pressure QTL 34	5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	42495343	79271511	Rat
724515	Uae16	Urinary albumin excretion QTL 16	8		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	58163035	100929646	Rat
1598834	Memor11	Memory QTL 11	2.5		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	9	36962359	77814038	Rat
70186	Niddm26	Non-insulin dependent diabetes mellitus QTL 26	3.87		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	9	22071169	86369743	Rat
7207814	Bmd91	Bone mineral density QTL 91	3.5		femur size trait (VT:1000369)	femoral neck cross-sectional area (CMO:0001697)	9	23754144	83851531	Rat
6903941	Pur31	Proteinuria QTL 31		0.036	urine total protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	9	40194188	85194188	Rat
2303180	Bp333	Blood pressure QTL 333		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	56627713	78595166	Rat
2290450	Scl57	Serum cholesterol level QTL 57	4.15		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	9	36962359	95410867	Rat
11353949	Bp393	Blood pressure QTL 393			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	40194188	85194188	Rat
11353951	Bp394	Blood pressure QTL 394			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	44649921	89649921	Rat
10054125	Srcrt7	Stress Responsive Cort QTL 7	3.33	0.0011	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	9	1	87073594	Rat
1300134	Bp185	Blood pressure QTL 185	3.73		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	9	61381434	104821652	Rat
1331757	Cdexp1	CD45RC expression in CD8 T cells QTL 1	4.3		CD8-positive T cell quantity (VT:0008077)	blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)	9	1024537	67509080	Rat
7411656	Foco26	Food consumption QTL 26	9.8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	9	32535505	77535505	Rat
1578659	Tspe1	Trichinella spiralis expulsion QTL 1	4.8		parasite quantity (VT:0010441)	logarithm of the intestinal adult Trichinella spiralis count (CMO:0002024)	9	61381434	65691299	Rat
1641894	Alcrsp12	Alcohol response QTL 12			response to alcohol trait (VT:0010489)	brain neurotensin receptor 1 density (CMO:0002068)	9	27468639	72468639	Rat

Markers in Region

BE098157

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	61,910,016 - 61,910,166 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	67,290,528 - 67,290,677	NCBI	Rnor6.0
Rnor_5.0	9	67,104,816 - 67,104,965	UniSTS	Rnor5.0
RGSC_v3.4	9	59,085,765 - 59,085,914	UniSTS	RGSC3.4
Celera	9	59,338,309 - 59,338,458	UniSTS
RH 3.4 Map	9	506.2	UniSTS
Cytogenetic Map	9	q31	UniSTS

BF399918

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	61,912,089 - 61,912,248 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	67,292,601 - 67,292,759	NCBI	Rnor6.0
Rnor_5.0	9	67,106,889 - 67,107,047	UniSTS	Rnor5.0
RGSC_v3.4	9	59,087,838 - 59,087,996	UniSTS	RGSC3.4
Celera	9	59,340,382 - 59,340,540	UniSTS
RH 3.4 Map	9	503.8	UniSTS
Cytogenetic Map	9	q31	UniSTS

RH139062

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	61,908,423 - 61,908,633 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	67,288,935 - 67,289,144	NCBI	Rnor6.0
Rnor_5.0	9	67,103,223 - 67,103,432	UniSTS	Rnor5.0
RGSC_v3.4	9	59,084,142 - 59,084,351	UniSTS	RGSC3.4
Celera	9	59,336,716 - 59,336,925	UniSTS
RH 3.4 Map	9	503.5	UniSTS
Cytogenetic Map	9	q31	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001108798	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083861	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083862	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083863	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083864	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083866	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083868	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083869	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083870	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267379	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267380	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267381	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267382	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005488933	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473965	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000036194 ⟹ ENSRNOP00000033491

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	61,915,418 - 61,961,209 (-)	Ensembl
Rnor_6.0 Ensembl	9	67,293,309 - 67,341,341 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000102881 ⟹ ENSRNOP00000081933

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	61,909,506 - 61,961,209 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000103194 ⟹ ENSRNOP00000096832

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	61,907,758 - 61,961,209 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000106942 ⟹ ENSRNOP00000078550

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	61,909,506 - 61,961,209 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000110139 ⟹ ENSRNOP00000093050

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	61,909,506 - 61,961,209 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000119642 ⟹ ENSRNOP00000084951

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	61,909,506 - 61,961,209 (-)	Ensembl

RefSeq Acc Id:

NM_001108798 ⟹ NP_001102268

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	69,403,496 - 69,484,019 (-)	NCBI
mRatBN7.2	9	61,909,493 - 61,990,020 (-)	NCBI
Rnor_6.0	9	67,290,004 - 67,370,208 (-)	NCBI
Rnor_5.0	9	67,104,292 - 67,184,496 (-)	NCBI
RGSC_v3.4	9	59,083,429 - 59,165,764 (-)	RGD
Celera	9	59,337,785 - 59,417,840 (-)	NCBI

Sequence:

show sequence

GCGGCCGACCCGCCCAGTTCCCGCCGACGCCCGCTCTGTGGGTCGGTCAGTCAGTCACCGAGCG
CGCGCCGCGGGAGCTGCGGTCGCTCTCAGCGTTCGGGAGAGGAGCGTCGCGCCTGGCGAGGCGG
CAGCGGCGGCTGGAGGGCGCGAGCAGCTGCTGCCTAGCGCGGGGCTCCGGGAGGGCCGAGGGGC
TGCCGCGATGGAGCAACTATCTGATGAAGAGATTGACCATGGTGCAGAAGAAGACAGTGACAAG
GAAGATCAGGACCTGGACAAAATGTTTGGGGCCTGGCTTGGGGAGCTGGACAGACTTACTCAGA
GTTTGGATTCTGACAAGCCCAAAGAACCAGTGAAAAGATCTCCTCTTCGCCAGGAAACAAATAT
GGCCAACTTTTCTTACCGTTTCTCCATATACAACTTGAATGAAGCTCTGAATCAGGGTGAGACT
GTGGATCTGGACGCCCTGATGGCCGATCTCTGCTCTATAGAGCAGGAGCTCAGCAGTGTTGGCT
CAGGAAATAGTAAGCGCCAAGTCACAGAACCCAAAGTTGCTCAGAAGCTACCTGCTAGCCGACA
TACATCAAAACATGGTACCCTGAGAGGAGTGTCATCTTCCTCTACTAGAACAACTAGGCCTCCG
CATGCTAACTACTCCCTGGATGACATCACTGCACAGTTAGAACAGGCTTCCTTGAGCATGGACG
AGGCTGCTCAGCAGTCTGCAGTAGAAGATGCTAAGCCTCCCGCAACAAACCAGCACAGAAGGAC
CGCATCAGCAGGCACCGTGAGTGACGCCGAAGTGCGCTCCGTTAGCAACTCCTCCCGGTCGAGC
ATCACTTCTGCGGCCTCCAGCATGGATTCTCTGGATATTGACAAAGTCACACGCCCTCAAGAAC
TGGATTTGACAGCACACCAGGGAAAGCCAATTACTGAGGAAGAACAGGCAGCAAAACTGAAAGC
TGAGAAGATCCGAGTTGCTCTGGAGAAAATTAAAGAGGCTCAAGTGAAAAAGCTGGTGATCAGG
GTCCACATGTCTGATGACAGTTCTAAAACAATGATGGTGGATGAGAGACAGACAGTGAGACAAG
TGCTGGATAACCTGATGGACAAATCTCACTGTGGCTACAGTTTAGACTGGTCGCTGGTGGAGAC
AATTTCTGAGTTACAAATGGAAAGAATCTTTGAAGACCATGAAAACTTGGTTGAAAATCTTCTT
AATTGGACAAGAGACAGCCAAAATAAGCTTATATTTATGGAGCGTATAGAAAAATATGCACTTT
TTAAAAACCCCCAGAATTACCTTCTAGGGAAAAAGGAAACGGCTGAGATGGCAGACAGAAACAA
AGAAGTGCTGTTAGAGGAATGTTTTTGTGGAAGTTCTGTAACTGTCCCAGAAATTGAAGGAGTC
CTTTGGTTGAAAGATGATGGCAAGAAGTCCTGGAAAAAGCGTTATTTTCTCTTGCGAGCATCTG
GTATCTACTATGTCCCTAAAGGGAAAGCAAAGGTATCTCGGGATCTAGTGTGCTTTCTCCAGCT
GGATCATGTAAATGTATACTATGGGCAGGACTATCGGAACAAATACAAAGCACCCACAGACTGC
TGTCTGGCCTTAAAGCACCCACAGATCCAGAAGAAGTCTCAGTACATCAAGTACCTTTGTTGTG
ATGATGCAAGGACCCTGCATCAGTGGGTCAATGGGATCCGCATTGCCAAGTATGGGAAGCAGCT
CTACACGAATTACCAAGAAGCCTTGAAGAGGACAGAGTCAGCTTATGATTGGACCTCTTTATCC
AGCTCCAGCATTAAATCCGGATCCAGTTCTTCCAGTATCCCAGAGTCTCAGTCCAATCACTCTA
ATCAGTCTGACAGTGGAGTGTCTGACACCCTGCCCTCCGGACACATCCGCTCCCAAAGTACTGT
GAGCTCTATCTTCTCGGAAGCCTGGAAGCGAGGCACTCAGTTGGAAGAGTCCAGCAAGGCCAGA
ATGGAGTCTATGAATCGGTCCTACACTTCACTTATGCCCCCCCTGTCCCCTCAAACTAAGATCA
TCACTCCCTATACTGCCTCACAACCTTCACCACCTCTGCCTCCTCCTCCACCACCACCTCCTCC
TCCTCCACCTCCACCACCACCACCTCCTCCTCCTCTCCCCAGCCAGTCTGCACCATCTTCAGGC
TCAGCAGCCACCATGTTTGTCAAGTACAGCACAATCACCAGGCTGCAGAATGCAGCTCAGCATT
CAGGGACCCTGTTTAAGTCTCCAGCACCATCAGCGATGCAGCCTCTTCCTTTGGCTTCACAGTC
CAAGGCTCAAATTGTGGTGCCCCCCAATGGAGTTATTCCTCCACCCCCTCCTCCTCCCCCACCC
CCAACCCCCGGCTCAGCCATGGCCCAGTTAAAGCCAGTGCCATGTGCCCCATCCCTACCACAGT
TCAGCCCCCAACCTCCACCCCTGAAGATTCATCAGGTTCAGCATCTTCCTCAGGCAGCCCCTCC
TACACCCCCAGCAGCTCCTCTCATCCCTGCAACTGTGCCACCTCAAGCACCCCCTAAACCTCTG
GTGACCATTCCTCCTTCAGCCAGCACAAAGATGGTGTCACCAGTAGTAGCACAAGCTGTACCAC
CTACCCCTGCACCTCCAGTGCCCCCAACAAAGAAACAGCCAGTATTCCCTGTTTCTCACATTCC
ACCCACTCCCCCTGTCCAGCCTACCCCACATCCCCCACCAACACTACCCAAGCAGCAGAGCTTT
GGGGTGAAGCCACCCCCCTCTCCACTGTCCCCTGTGCCCTCAGTTGTGAAGCAGATGGCCAGTC
AGTTTCCACCCCCTCCCACTCCTCCTCCTGTGGACTCTCAGCCCCTAAAACCTCTCCCAGCAAG
TGTCACCCCACAGTCCCCTCCTGCAGTAAAAGCAAAACCCAAATGGCAGCCCAGTTCAATCCCT
GCCCCTTCTCCAGATTTCCCTCCTCCCCCTCCTGAAAGCAGCCTGGTATTTCCTCCACCACCTC
CTCCAGCCCCAGTCCCACCACCACCACCACCACCACCTCCACCACCACCACCACCACCAGTGTC
ACCTATGGCTTCACCTACCCCTGACAAAGGTGGATCTCCAGGCAAAAAGACAAGTAAGATGTCC
AGCCCTGGGGGGAAGAAACCACCCCCAACCCCGCAGCGCAACTCCAGCATTAAGTCCGGCAGTT
GTGCAGAGCACCCTGAGCCCAAGCGACCCTCGGTAGACAGTCTAGTCAGCAAGTTTGCACCGCC
AGCAGAATCAGGGTCTCCCAGCAAGGAGACCCCACCACCTCCTGCAGCACCCCCCAAACCTGGG
AAACTACACCTTTCTGGAGTCAACCTCCCTGGAATCCATCAGCAAGGGATTTTGTCGGCAAAAC
CCTCTGTTCTAAGTGGGCGTGGAAAGGACGCCGTGGTGGAATTTCCATCTCCACCATCTGATTC
TGACTTTCCACCCCCTCCTCCTGAAATAGAGCTTCCTCTACCCCCTATCGAGATTCCAGCTGTC
TTCTCCGGGAACACCTCCCCAAAAGTGGCAGTTGTTAATCCTCAGCCACAGCTATGGTCTAAAA
CATCAGTGAAGAAGGCCCCTCCACCTACCCGGCCCAAACGCAATGATAGTACCCGTCTCACTCA
AGCTGACATCTCTGAACAGCCAGCGATGACCACAGTTGTGCCACAAGTGCCCACTTCTCCTAAA
TCCAGCCTTAGCGTCCAGCCTGGATTCCTAGCTGATCTCAACAGGACACTGCAGCGCAAGTCTA
TCACACGGCATGGCTCCCTCTCCTCCTCACGTATGTCTAGAGCAGAACCCACAGCCACAATGGA
CGACATGGCACTACCCCCACCACCACCAGAACTGCTGTCTGACCAGCAGAAAGCTGGCTTTGGA
GGTAGTCATATTTCAGGCTATGCAACATTGCGAAGAGGACCCCCTCCCGCCCCTCCTAAAAGAG
ACCAGAATACTAAGCTCTCAAGAGACTGGTAGCCACAAGACATTTTCATGCTATCTATAATCAG
TTCTACAATCAGTTCATCTGATCATCTGTGAATCCAGGTGTTCAGAGCCTCCTGATATGTTATT
CAGGTAGTGTCCAGCTGTGTGTGTGGGTTTGTGTGTATATGTGCTGCATGTGTGTACATGGATG
TACACACAGCTATACAGACAGTGTGTATATACATATGTATACATCTATGTGTATATATACAGAG
AACTGATTCTATTTATTCCTTCTGCCTCCTAATCCAAATATGGAGTTTTGTATATTTTGGGTGG
AAGAAGACATAGGAGGGGATATGTTGTCACTTAAAACTTGTCTAGTGTATGGATTGGACCAAAT
ACTAGAAGGTATTTCCTGTGTCTATCCACGTGCCACCTATCTGTGCATGTGTTATAGGAGATGG
GCAGTTTCTCAGCTAGAGTGTATCATCAGAATGTTTGGTGTACTGATAGGGCTTTTTTCTCTAT
TTCTCCCAGTTTTTCCCAGTTCACTGGATTTAGAACTGCTTGACTGACACTTAAATACTACATG
TAAAGGGGCACTTTACATCAGGGAAACTATTATACAGAATGGGTAAACAGTGCAGGAAAGGGAG
TGGTTGTAAATGGGAAAGTCATGGCCGTTCTAGTTGCAGTACTGCCATGACCCCAGCCACATCT
AAGATGTCTTCACAGGTAAGCTTTGTGTCCACAGCACAAGGAATATTTAATGTTATGATCTGGG
CTACCTTCAGTACTGTCTTGCAAAGCTTCATCAACTTGGCTTTATGATTCTTGCTTTATTGTGA
ATGTCCAGTACACATTGTAATGTACTGTTCAGTTATGTCTTCGGGTCACAATCATCTTCATATA
TAGTGTGTGCATTCATAGACATTTGAATACATGAATAGTCTGAGTATGAAATATATACCCTGTG
CCCAGTTTGGTTCATTATTATAAAGACAGTCGCCTGCTGCAATGCCTCCTTTACAAATTGTTCT
ATGAGAAAGAAAGAAAAAACTAAACTGGCCCCTGTACAGATATCTTTGATGAAGTTACAATGCA
AAGAATCCATCTGGGAATGGGATTGTCATGAACAAAAAGTTTCCATAATTTCATCCATAGCTAG
TGGAGCTGCTAAGACCTTTGTTTGCTATTCACAGCTCAAGTGTAGAGATTTTTATAAGTGACCA
GATGTTCTGATGGAGCAGTGTCACAGTCCAGTGACAGTAAGTGACACACTGGCTATGCAAAGGC
AGCTAGGCAAACCTTGGCTGCACTGCTCCTATTCTGTGTGCTTTTGGTATGAGAAGTGTGTGCT
CATCAACTTAGAGTGACCTTAGAGCTAGCTATTTTAAGAGGATAAAAACTGGCCATCCCACCAA
TTACAAGTGAACATGTCTTGTAAAGAAAGGCTGCCTACTAAAAAAATAACCAGTGCCAAATGCA
ATCTTTTGGTCCTGTCCCTCAAAGAGAAAGCGGCTGCAATGGATCTGGGCCAAGACTCACTAGA
GAGCATAGTATTTGTACTACTTCGTCATAAAGACGTGCGAGTGGCACCCTTGTCACATCTGCAG
CCACTGTTCAGTGCCGTCACACATTAGGAAGGAAAAAGACCATTTAAGTCATTGTATTTTTTAA
AACCCAACTTAAGGAAATTTATTGAATCTTTCAAATTGTTCACCAAGTATTTATGCTTGATATT
CCTATGATGAAATGACCTTTAACATACTGAATTGTTAGTTTCAACAAACACAACAAATGCAGTC
AATCTGAGTACAGAGGCCAAGCCCCACTGAGGCTGGGAGAAGTGCTGCTTCCCTGTGCTTATCA
ACCTGTGGCTCTACGTTCAAGAGAGTGGATCCGGTTATCCCCAGTATTACTTTTTTCTTTTTAA
ATTAAACCAGATGAAACAATTTAAGATTTCCTTGAGTGGAAAAATATGTACTTCCGGTCTATAT
TAAGCCCTAAATCAATAGCCTTCTCTTTTTTTCCAGTGTGGATTTCATGGGAATTCTTAAGACA
TCCTGAGCTATGACTTCTGTTTTATTGTCATGGGAGGGCAGATAACTTTGAAAACCAGTAATGC
CAAAAAAATGAGAGAGCAGTAACTACCCATTTCTAACTCGCATGACAGCACCCAGTTTCTTTAT
ATTTCTCAAAGATAATAGCTGTTAATTTTTTTTTAAAAAAGGTGATACATCGCAATCTTTTTTT
TTTTTTTTTTTTAGGTGACACATTCCAATCTTTGTTTTTAGCTGCCTAGAGTGTTTGAAGGTTG
TGCTGAGGTGTAGTCTTGTTGCTTCTCTGTCTCTGATGTGTTTGTTCATGGACAAGACCCACTG
CCAGACAACACTGGTTCTGTGCCTTCTCTCACTGCCCTTTGCTTGGCAGCTCCAGCTTACATGG
CTTTTTAGGCCAGTGAAAGGCACCCAGAGGCTGCCTGGACTGACTAGTGAATAGGGTGAAGGAC
CTTCCCCTGAGGGCAGAACAGGTGCTTTTCAGAACTGGTGACTAGCTTTTTGACAACCTTAATT
TTTACTATATAAGTAATCTCAAGAGTCTCTAGTGCTGAAGCTTTGGCACCAACTCTGAAGGGCA
GCAGAAAACCACACTCCAGCTCACAGCTGTTAGAACGCTCGTCTACGTGAATCTCACCACCTTG
GCTTTTACTCCCAGGAGATTTACATGCTCATTTGAAGGGGAGAAAATTAATTTTTAAGATGTCC
ACTCACAGATAACTAGATTTTTTTCAATATCTGAACTTTTTAACCTGAGAAAGATGGCTGTATC
TTACAGATTATCAAAAAGACATTTTCATCAGATAATTAAAACTAATAAAGATGACTGTGGGTTT
TTTTTAAGTCCTTCAAAATTAAGGTGCTCCTACCCCATGGATGGCATATCTTGCAAAGGGCTAA
GAACTGTTTTGGGTTCCTTTTGTGTTACTTTGATGTTATAAATAATGTTGAATTTGTCTAAACA
GGATTGAGAGGTCACAGGGTAACAATTCCAAAATTCAGATTAACAGAGGTTTCAGAACCTGGAT
TTGTTCATCAGACTTTGAACTGAACATATTGTCACCTTTGCTATTCAAAACCAATTTTATGTTA
CAAACACAAGGCAGTGTTTAATCAAGTAAAAAAATTCATGCAAATATTTCCATGTATCTTCAGA
AATCAGAAACAGCATTATAACTGATGTAATCCCAGATTCTACGCTAGCTTACTAATTAAAATAA
TGGTCCTCTATGGTTAGGTGACAATTTCTAATAAAATAGGTAAAAATACCTTTCTTTATTAAAA
AAATCCCTT

hide sequence

RefSeq Acc Id:

XM_039083861 ⟹ XP_038939789

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	69,401,714 - 69,484,174 (-)	NCBI
mRatBN7.2	9	61,907,711 - 61,990,170 (-)	NCBI

RefSeq Acc Id:

XM_039083862 ⟹ XP_038939790

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	69,401,714 - 69,484,174 (-)	NCBI
mRatBN7.2	9	61,907,711 - 61,990,169 (-)	NCBI

RefSeq Acc Id:

XM_039083863 ⟹ XP_038939791

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	69,401,714 - 69,484,174 (-)	NCBI
mRatBN7.2	9	61,907,711 - 61,990,169 (-)	NCBI

RefSeq Acc Id:

XM_039083864 ⟹ XP_038939792

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	69,401,714 - 69,455,051 (-)	NCBI
mRatBN7.2	9	61,907,711 - 61,961,049 (-)	NCBI

RefSeq Acc Id:

XM_039083866 ⟹ XP_038939794

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	69,401,714 - 69,412,332 (-)	NCBI
mRatBN7.2	9	61,907,711 - 61,918,329 (-)	NCBI

RefSeq Acc Id:

XM_039083868 ⟹ XP_038939796

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	69,397,272 - 69,484,091 (-)	NCBI
mRatBN7.2	9	61,907,489 - 61,990,166 (-)	NCBI

RefSeq Acc Id:

XM_039083869 ⟹ XP_038939797

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	69,408,648 - 69,484,169 (-)	NCBI
mRatBN7.2	9	61,914,685 - 61,990,165 (-)	NCBI

RefSeq Acc Id:

XM_039083870 ⟹ XP_038939798

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	69,397,272 - 69,484,091 (-)	NCBI
mRatBN7.2	9	61,907,476 - 61,990,165 (-)	NCBI

RefSeq Acc Id:

XM_063267379 ⟹ XP_063123449

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	69,401,714 - 69,484,169 (-)	NCBI

RefSeq Acc Id:

XM_063267380 ⟹ XP_063123450

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	69,401,714 - 69,484,166 (-)	NCBI

RefSeq Acc Id:

XM_063267381 ⟹ XP_063123451

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	69,397,272 - 69,484,091 (-)	NCBI

RefSeq Acc Id:

XM_063267382 ⟹ XP_063123452

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	69,397,272 - 69,484,091 (-)	NCBI

RefSeq Acc Id:

XR_005488933

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	69,401,714 - 69,484,174 (-)	NCBI
mRatBN7.2	9	61,907,731 - 61,990,170 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001102268	(Get FASTA)	NCBI Sequence Viewer
	XP_038939789	(Get FASTA)	NCBI Sequence Viewer
	XP_038939790	(Get FASTA)	NCBI Sequence Viewer
	XP_038939791	(Get FASTA)	NCBI Sequence Viewer
	XP_038939792	(Get FASTA)	NCBI Sequence Viewer
	XP_038939794	(Get FASTA)	NCBI Sequence Viewer
	XP_038939796	(Get FASTA)	NCBI Sequence Viewer
	XP_038939797	(Get FASTA)	NCBI Sequence Viewer
	XP_038939798	(Get FASTA)	NCBI Sequence Viewer
	XP_063123449	(Get FASTA)	NCBI Sequence Viewer
	XP_063123450	(Get FASTA)	NCBI Sequence Viewer
	XP_063123451	(Get FASTA)	NCBI Sequence Viewer
	XP_063123452	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL98929	(Get FASTA)	NCBI Sequence Viewer
	EDL98930	(Get FASTA)	NCBI Sequence Viewer
	EDL98931	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000033491.6
	ENSRNOP00000078550.1
	ENSRNOP00000081933.1
	ENSRNOP00000084951.1
	ENSRNOP00000093050.1
	ENSRNOP00000096832.1

RefSeq Acc Id:

NP_001102268 ⟸ NM_001108798

- UniProtKB:

A0A8I5ZU51 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MEQLSDEEIDHGAEEDSDKEDQDLDKMFGAWLGELDRLTQSLDSDKPKEPVKRSPLRQETNMAN
FSYRFSIYNLNEALNQGETVDLDALMADLCSIEQELSSVGSGNSKRQVTEPKVAQKLPASRHTS
KHGTLRGVSSSSTRTTRPPHANYSLDDITAQLEQASLSMDEAAQQSAVEDAKPPATNQHRRTAS
AGTVSDAEVRSVSNSSRSSITSAASSMDSLDIDKVTRPQELDLTAHQGKPITEEEQAAKLKAEK
IRVALEKIKEAQVKKLVIRVHMSDDSSKTMMVDERQTVRQVLDNLMDKSHCGYSLDWSLVETIS
ELQMERIFEDHENLVENLLNWTRDSQNKLIFMERIEKYALFKNPQNYLLGKKETAEMADRNKEV
LLEECFCGSSVTVPEIEGVLWLKDDGKKSWKKRYFLLRASGIYYVPKGKAKVSRDLVCFLQLDH
VNVYYGQDYRNKYKAPTDCCLALKHPQIQKKSQYIKYLCCDDARTLHQWVNGIRIAKYGKQLYT
NYQEALKRTESAYDWTSLSSSSIKSGSSSSSIPESQSNHSNQSDSGVSDTLPSGHIRSQSTVSS
IFSEAWKRGTQLEESSKARMESMNRSYTSLMPPLSPQTKIITPYTASQPSPPLPPPPPPPPPPP
PPPPPPPPPLPSQSAPSSGSAATMFVKYSTITRLQNAAQHSGTLFKSPAPSAMQPLPLASQSKA
QIVVPPNGVIPPPPPPPPPPTPGSAMAQLKPVPCAPSLPQFSPQPPPLKIHQVQHLPQAAPPTP
PAAPLIPATVPPQAPPKPLVTIPPSASTKMVSPVVAQAVPPTPAPPVPPTKKQPVFPVSHIPPT
PPVQPTPHPPPTLPKQQSFGVKPPPSPLSPVPSVVKQMASQFPPPPTPPPVDSQPLKPLPASVT
PQSPPAVKAKPKWQPSSIPAPSPDFPPPPPESSLVFPPPPPPAPVPPPPPPPPPPPPPPPVSPM
ASPTPDKGGSPGKKTSKMSSPGGKKPPPTPQRNSSIKSGSCAEHPEPKRPSVDSLVSKFAPPAE
SGSPSKETPPPPAAPPKPGKLHLSGVNLPGIHQQGILSAKPSVLSGRGKDAVVEFPSPPSDSDF
PPPPPEIELPLPPIEIPAVFSGNTSPKVAVVNPQPQLWSKTSVKKAPPPTRPKRNDSTRLTQAD
ISEQPAMTTVVPQVPTSPKSSLSVQPGFLADLNRTLQRKSITRHGSLSSSRMSRAEPTATMDDM
ALPPPPPELLSDQQKAGFGGSHISGYATLRRGPPPAPPKRDQNTKLSRDW

hide sequence

Ensembl Acc Id:

ENSRNOP00000033491 ⟸ ENSRNOT00000036194

RefSeq Acc Id:	XP_038939798 ⟸ XM_039083870
- Peptide Label:	isoform X9
- UniProtKB:	D4ADX8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038939796 ⟸ XM_039083868
- Peptide Label:	isoform X6
- UniProtKB:	A6IPC9 (UniProtKB/TrEMBL), A0A8I6AMM7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038939789 ⟸ XM_039083861
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6A272 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038939791 ⟸ XM_039083863
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I5ZL54 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038939790 ⟸ XM_039083862
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6AF23 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038939792 ⟸ XM_039083864
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038939794 ⟸ XM_039083866
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_038939797 ⟸ XM_039083869
- Peptide Label:	isoform X7
- UniProtKB:	D4ADX8 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000093050 ⟸ ENSRNOT00000110139

Ensembl Acc Id:

ENSRNOP00000084951 ⟸ ENSRNOT00000119642

Ensembl Acc Id:

ENSRNOP00000078550 ⟸ ENSRNOT00000106942

Ensembl Acc Id:

ENSRNOP00000081933 ⟸ ENSRNOT00000102881

Ensembl Acc Id:

ENSRNOP00000096832 ⟸ ENSRNOT00000103194

RefSeq Acc Id:	XP_063123452 ⟸ XM_063267382
- Peptide Label:	isoform X12
- UniProtKB:	A6IPD1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063123451 ⟸ XM_063267381
- Peptide Label:	isoform X11
- UniProtKB:	D4ADX8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063123449 ⟸ XM_063267379
- Peptide Label:	isoform X8
- UniProtKB:	A0A8I6AMM7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063123450 ⟸ XM_063267380
- Peptide Label:	isoform X10
- UniProtKB:	A0A8I6AMM7 (UniProtKB/TrEMBL)

Protein Domains

PH Ras-associating

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4ADX8-F1-model_v2	AlphaFold	D4ADX8	1-1265	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1308387	AgrOrtholog
BioCyc Gene	G2FUF-27379	BioCyc
Ensembl Genes	ENSRNOG00000014722	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000036194.7	UniProtKB/TrEMBL
	ENSRNOT00000102881.1	UniProtKB/TrEMBL
	ENSRNOT00000103194.1	UniProtKB/TrEMBL
	ENSRNOT00000106942.1	UniProtKB/TrEMBL
	ENSRNOT00000110139.1	UniProtKB/TrEMBL
	ENSRNOT00000119642.1	UniProtKB/TrEMBL
Gene3D-CATH	2.30.29.30	UniProtKB/TrEMBL
InterPro	GRB/APBB1IP	UniProtKB/TrEMBL
	PH_APBB1IP	UniProtKB/TrEMBL
	PH_type	UniProtKB/TrEMBL
	Pleckstrin_homology	UniProtKB/TrEMBL
	Ras-assoc	UniProtKB/TrEMBL
	Ubiquitin-rel_dom	UniProtKB/TrEMBL
KEGG Report	rno:363239	UniProtKB/TrEMBL
NCBI Gene	363239	ENTREZGENE
PANTHER	PTHR11243	UniProtKB/TrEMBL
	RAS-ASSOCIATED AND PLECKSTRIN HOMOLOGY DOMAINS-CONTAINING PROTEIN 1	UniProtKB/TrEMBL
Pfam	PF00169	UniProtKB/TrEMBL
	RA_2	UniProtKB/TrEMBL
PharmGKB	RAPH1	RGD
PhenoGen	Raph1	PhenoGen
PRINTS	PRICHEXTENSN	UniProtKB/TrEMBL
PROSITE	PH_DOMAIN	UniProtKB/TrEMBL
	PS50200	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000014722	RatGTEx
SMART	SM00233	UniProtKB/TrEMBL
	SM00314	UniProtKB/TrEMBL
Superfamily-SCOP	PH domain-like	UniProtKB/TrEMBL
	SSF54236	UniProtKB/TrEMBL
UniProt	A0A8I5ZL54	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZU51	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6A272	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AF23	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AMM7	ENTREZGENE, UniProtKB/TrEMBL
	A6IPC9	ENTREZGENE, UniProtKB/TrEMBL
	A6IPD1	ENTREZGENE, UniProtKB/TrEMBL
	D4ADX8	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Raph1	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1	Raph1_predicted	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Raph1_predicted	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar