Mdh1b (malate dehydrogenase 1B) - Rat Genome Database

Name: Mdh1b
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Mdh1b (malate dehydrogenase 1B) Rattus norvegicus

Analyze

Symbol:

Mdh1b

Name:

malate dehydrogenase 1B

RGD ID:

1307874

Description:

Predicted to have L-malate dehydrogenase activity. Predicted to be involved in NADH metabolic process; dicarboxylic acid metabolic process; and tricarboxylic acid cycle. Orthologous to human MDH1B (malate dehydrogenase 1B); INTERACTS WITH bisphenol A; bromobenzene; decabromodiphenyl ether.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Also known as:

LOC316444; malate dehydrogenase 1B, NAD (soluble); putative malate dehydrogenase 1B

Orthologs:

Homo sapiens (human) : MDH1B (malate dehydrogenase 1B) HGNC Alliance
Mus musculus (house mouse) : Mdh1b (malate dehydrogenase 1B, NAD (soluble)) MGI Alliance
Chinchilla lanigera (long-tailed chinchilla) : Mdh1b (malate dehydrogenase 1B)
Pan paniscus (bonobo/pygmy chimpanzee) : MDH1B (malate dehydrogenase 1B)
Canis lupus familiaris (dog) : MDH1B (malate dehydrogenase 1B)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Mdh1b (malate dehydrogenase 1B)
Sus scrofa (pig) : MDH1B (malate dehydrogenase 1B)
Chlorocebus sabaeus (African green monkey) : MDH1B (malate dehydrogenase 1B)
Heterocephalus glaber (naked mole-rat) : Mdh1b (malate dehydrogenase 1B)

more info ...

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	MDH1B (malate dehydrogenase 1B)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Mdh1b (malate dehydrogenase 1B, NAD (soluble))	HGNC	Treefam, EggNOG, OrthoMCL, NCBI, OMA, HomoloGene, Inparanoid, Panther, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Mdh1b (malate dehydrogenase 1B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	MDH1B (malate dehydrogenase 1B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	MDH1B (malate dehydrogenase 1B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Mdh1b (malate dehydrogenase 1B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	MDH1B (malate dehydrogenase 1B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (African green monkey):	MDH1B (malate dehydrogenase 1B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Mdh1b (malate dehydrogenase 1B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	MDH1B (malate dehydrogenase 1B)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Mus musculus (house mouse):	Mdh1b (malate dehydrogenase 1B, NAD (soluble))	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Danio rerio (zebrafish):	mdh1b (malate dehydrogenase 1B, NAD (soluble))	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|TreeFam)

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rnor_6.0	9	70,403,612 - 70,450,204 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	70,404,093 - 70,450,170 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	72,123,041 - 72,169,621 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	62,368,173 - 62,418,212 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	9	62,555,822 - 62,565,152 (-)	NCBI
Celera	9	62,531,570 - 62,578,420 (-)	NCBI		Celera
Cytogenetic Map	9	q32	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

cytochrome-c oxidase deficiency disease (ISO)

Neurodevelopmental Disorders (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

17alpha-ethynylestradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

aflatoxin B1 (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP)

bisphenol F (ISO)

bromobenzene (EXP)

butanal (ISO)

carbon nanotube (ISO)

chloroprene (ISO)

choline (ISO)

cisplatin (ISO)

decabromodiphenyl ether (EXP)

folic acid (ISO)

furan (EXP)

gold atom (ISO)

gold(0) (ISO)

L-methionine (ISO)

methylmercury chloride (ISO)

pirinixic acid (ISO)

potassium dichromate (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

titanium dioxide (ISO)

valproic acid (ISO)

vinclozolin (EXP)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

carbohydrate metabolic process (IEA)

malate metabolic process (IBA)

NADH metabolic process (IBA)

oxaloacetate metabolic process (IBA)

tricarboxylic acid cycle (IBA)

Molecular Function

L-malate dehydrogenase activity (IBA)

References

References - curated


1.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	RGD automated data pipeline
3.	RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data

Mdh1b
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rnor_6.0	9	70,403,612 - 70,450,204 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	70,404,093 - 70,450,170 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	72,123,041 - 72,169,621 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	62,368,173 - 62,418,212 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	9	62,555,822 - 62,565,152 (-)	NCBI
Celera	9	62,531,570 - 62,578,420 (-)	NCBI		Celera
Cytogenetic Map	9	q32	NCBI

MDH1B
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	2	206,737,763 - 206,765,328 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	2	206,737,763 - 206,765,544 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	2	207,602,487 - 207,630,268 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	207,310,732 - 207,338,295 (-)	NCBI	NCBI36		hg18	NCBI36
Celera	2	201,363,918 - 201,391,481 (-)	NCBI
Cytogenetic Map	2	q33.3	NCBI
HuRef	2	199,451,956 - 199,479,592 (-)	NCBI		HuRef
CHM1_1	2	207,608,333 - 207,636,135 (-)	NCBI		CHM1_1

Mdh1b
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	63,726,732 - 63,769,707 (-)	NCBI
GRCm38	1	63,698,827 - 63,730,318 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	63,698,819 - 63,730,318 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	63,745,401 - 63,776,892 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	1	63,633,103 - 63,664,594 (-)	NCBI			mm8
Celera	1	64,225,205 - 64,256,797 (-)	NCBI		Celera
Cytogenetic Map	1	C2	NCBI

Mdh1b
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955457	8,212,523 - 8,243,877 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955457	8,213,271 - 8,268,350 (+)	NCBI	ChiLan1.0	ChiLan1.0

MDH1B
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	2B	212,100,285 - 212,128,079 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
Mhudiblu_PPA_v0	2B	93,972,114 - 93,999,996 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

MDH1B
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	37	15,256,507 - 15,287,341 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	37	15,255,894 - 15,287,374 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Mdh1b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936631	3,050,689 - 3,074,396 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

MDH1B
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	109,989,062 - 110,021,195 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	15	109,989,095 - 110,021,237 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	15	121,598,070 - 121,617,709 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

MDH1B
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1 Ensembl	10	92,510,429 - 92,550,598 (-)	Ensembl
ChlSab1.1	10	92,511,706 - 92,550,302 (-)	NCBI

Mdh1b
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624765	9,209,653 - 9,247,651 (+)	NCBI

Position Markers

D1Mit466

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	9	70,389,799 - 70,390,015	NCBI	Rnor6.0
Rnor_5.0	9	72,183,229 - 72,183,445	UniSTS	Rnor5.0
RGSC_v3.4	9	62,352,255 - 62,352,471	UniSTS	RGSC3.4
Celera	9	62,517,680 - 62,517,896	UniSTS
Cytogenetic Map	9	q32	UniSTS

QTLs in Region (Rnor_6.0)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
10054125	Srcrt7	Stress Responsive Cort QTL 7	3.33	0.0011	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	9	1055222	93442944	Rat
70186	Niddm26	Non-insulin dependent diabetes mellitus QTL 26	3.87		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	9	25692342	92741406	Rat
631643	Bp120	Blood pressure QTL 120	3	0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	25692373	70692373	Rat
7207814	Bmd91	Bone mineral density QTL 91	3.5		femur size trait (VT:1000369)	femoral neck cross-sectional area (CMO:0001697)	9	27486155	88333183	Rat
70218	Cm28	Cardiac mass QTL 28	8.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	9	29075079	83686404	Rat
724544	Uae9	Urinary albumin excretion QTL 9	4.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	9	29075079	122095297	Rat
731164	Uae25	Urinary albumin excretion QTL 25	3.5	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	29466970	107878528	Rat
1641894	Alcrsp12	Alcohol response QTL 12			response to alcohol trait (VT:0010489)	brain neurotensin receptor 1 density (CMO:0002068)	9	32385133	77385133	Rat
7411571	Bw138	Body weight QTL 138	14.3	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	9	37642351	82642351	Rat
7411656	Foco26	Food consumption QTL 26	9.8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	9	37642351	82642351	Rat
1598834	Memor11	Memory QTL 11	2.5		exploratory behavior trait (VT:0010471)	average horizontal distance in proximity to the target during voluntary locomotion in an experimental apparatus (CMO:0002674)	9	41261034	90024806	Rat
8662828	Vetf6	Vascular elastic tissue fragility QTL 6	3.9		artery integrity trait (VT:0010639)	patent ductus arteriosus score (CMO:0002566)	9	41261034	98606834	Rat
2290450	Scl57	Serum cholesterol level QTL 57	4.15		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	9	41261034	102531865	Rat
6903941	Pur31	Proteinuria QTL 31		0.036	total urine protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	9	46579769	91579769	Rat
11353949	Bp393	Blood pressure QTL 393			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	46579769	91579769	Rat
61352	Bp34	Blood pressure QTL 34	5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	46952427	83686153	Rat
10058949	Gmadr5	Adrenal mass QTL 5	2	0.014	adrenal gland mass (VT:0010420)	both adrenal glands wet weight to body weight ratio (CMO:0002411)	9	47248965	94124663	Rat
631656	Bp108	Blood pressure QTL 108	5.97	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	54177542	99177542	Rat
1598849	Memor17	Memory QTL 17	2.2		exploratory behavior trait (VT:0010471)	difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)	9	54885041	76677636	Rat
2303170	Bp332	Blood pressure QTL 332	3.73	0.027	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	9	60810298	82732466	Rat
1578760	Cm53	Cardiac mass QTL 53	3.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	9	61186278	106186278	Rat
2303180	Bp333	Blood pressure QTL 333		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	9	61730923	82890620	Rat
2303180	Bp333	Blood pressure QTL 333		0.001	arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	9	61730923	82890620	Rat
2303180	Bp333	Blood pressure QTL 333		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	61730923	82890620	Rat
724515	Uae16	Urinary albumin excretion QTL 16	8		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	63270073	107878387	Rat
1578659	Tspe1	Trichinella spiralis expulsion QTL 1	4.8		parasite quantity (VT:0010441)	logarithm of the intestinal adult Trichinella spiralis count (CMO:0002024)	9	66757444	71010122	Rat
1300134	Bp185	Blood pressure QTL 185	3.73		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	9	66757444	112943287	Rat
1581580	Uae34	Urinary albumin excretion QTL 34			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	67451664	99920892	Rat
1578757	Pur6	Proteinuria QTL 6	3.3	0.005	total urine protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	9	67451664	99920892	Rat
61385	Edpm9	Estrogen-dependent pituitary mass QTL 9	3.43	0.05	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	9	70241351	115241351	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	32
Count of miRNA genes:	31
Interacting mature miRNAs:	32
Transcripts:	ENSRNOT00000017207
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium											7
Low			4	3	1	3			74	35	25	11
Below cutoff	2	15	53	38	18	38	4	4			9		4

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001108221	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017596469	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017596470	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017596471	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017596472	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017596473	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AABR07067878	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AABR07067879	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AAHX01060427	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AAHX01060428	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473965	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000017207 ⟹ ENSRNOP00000017207

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	9	70,404,093 - 70,450,170 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000086391 ⟹ ENSRNOP00000069626

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	9	70,404,094 - 70,449,796 (-)	Ensembl

RefSeq Acc Id:

NM_001108221 ⟹ NP_001101691

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	9	70,404,093 - 70,450,170 (-)	NCBI
Rnor_5.0	9	72,123,041 - 72,169,621 (+)	NCBI
RGSC_v3.4	9	62,368,173 - 62,418,212 (-)	RGD
Celera	9	62,531,570 - 62,578,420 (-)	RGD

Sequence:

show sequence

TGGAAACCGTGACGCCCGGGTTTCAGTTTCTAGGTCTTGCTAGAAATCATGGCCAAATTTGTGA
TCGCCGGTAAAGCAAACTGCCCATATTATGCTAAGGCAGAACTTCTGGCAGACTATTTACAAAA
GAATCTTCCTGACTTTCGGATTTTTAAGATCACGAAACATCCTGACGAGTGGGAGGAGTGGCTG
GAAGATGTCTGTGAAAGGAATATGTGGGACCACAGAATCTCCCCCATTATCTGGAGAGAGTTGC
TGGATCGTGGAGGCAAGGGCTTGCTTTTGGGAGGATACAATGAGTTTCTGGAACATGCCCAGCT
TTACTATGGCATCACTTCCAGCATGACGACAGAGCTGATGATGATCATCGCCCAAGAAAACATG
GAGACACATACAGAACAAGAGTTAGATAAAGAAAACTTGAAAGACCTCATCAGTCCCTTGCAGG
TCTGGATTACCAGTGCAGGTTCTCGTGTGTGCTGCCACTTAATTCCCCTCTTGCTAAGTGGGGA
AGTGTTCGGGATGCAGGCAGAGATCAGCCTGACCCTGTTTGACCAGGAGCAGAGGAGGGAATGC
CTCAGTAACATAGTGATGGAAACTGAGAATCTGGCCTCCCCAGTCCTGCGCACTGTCTCCTTCT
GCACGACGGTAAAGGATGCCTTCCTTCAGGCTGAAGTCATCATCATCCTGGATGACAGCACGGA
CGAGGAAGTGTACAACATGGAGAGCTGCCTTCGAAGCAGGGTACCACTGTGCCGCCTCTATGGT
TACCTGATAGAGAAAAATGCTCACAAATCTGTCAAAGTCATCGTGGGAGGGAAAAGCTTTCTGA
ATCTGAAAACAACTTTGCTCATACAATATGCACCTAGCCTCGCAAGCAACATCATCGCAGTGGC
TCTGGGGTTAGAAGGCCAAGCAAAAGCAGTACTGGCCCGAAAGATGAAAACAATTCCATCCAGA
ATCAAAGATGTGATAATTTGGGGTAATATCACTGGAAATAACTACGTTGATCTGAGGAAAGCAA
AAGTTTACAACTATGAGAGTGCTATTAGGGGACCTCCTGGATATTACCACTCTGTGTTAAGCTT
GATTTTTGACAGAGAGTGGATAACAAAAGAGTTTGTGAGGACGCTTAAAGACTTGAGCAGCACT
GGAAAACAATTTGGAGGCATTTTGGCAGCACACAGCATAGCCACCACCCTGAAGTACTGGTACT
ATGGCTCACCACCTGGAGAGATCGTTTCCTTGGGTGTAATGAGTGAAGGCCAGTTCGGCATTCC
TGAAGGGATTGTCTTTTCTATGCCAGTGAAATTTGAGAATGGAACTTGGGTGGTCCTTACTGAT
TTGGAAGACCTTTCGCTCAGCGAGAAGATAATAAACAGGCTCACAGGTGATCTGATTCAGGAGA
AACTTGTTGCATCTGGAGACTTATTAACTTTTCAACCAATTGAAGAAGACTCTGATGTAAAACA
TGGGGACCGTGAAAAGCTTCAACCAGAACAAACATGACGGAAAGACAGAAAGACTGGCGAGTGT
CTGCACTTAGGGAAAAGCAATTAAATGAAACAGGCCCCAAACCTGGTAGAGTCACATCCTACCA
CTTTTGCCAATTACTGTATGTCCTCAAAAACAAATGAACACAAACCACTGTTTTA

hide sequence

RefSeq Acc Id:

XM_017596469 ⟹ XP_017451958

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	9	70,403,614 - 70,449,774 (-)	NCBI

Sequence:

show sequence

GGGAGCATAAGGAATGGCAGGAGAGAAGGAACTAACTAGAGAGCTGTTAAAGGAACCACCTCCA
GATAAAGGTAAAGCAAACTGCCCATATTATGCTAAGGCAGAACTTCTGGCAGACTATTTACAAA
AGAATCTTCCTGACTTTCGGATTTTTAAGATCACGAAACATCCTGACGAGTGGGAGGAGTGGCT
GGAAGATGTCTGTGAAAGGAATATGTGGGACCACAGAATCTCCCCCATTATCTGGAGAGAGTTG
CTGGATCGTGGAGGCAAGGGCTTGCTTTTGGGAGGATACAATGAGTTTCTGGAACATGCCCAGC
TTTACTATGGCATCACTTCCAGCATGACGACAGAGCTGATGATGATCATCGCCCAAGAAAACAT
GGAGACACATACAGAACAAGAGTTAGATAAAGAAAACTTGAAAGACCTCATCAGTCCCTTGCAG
GTCTGGATTACCAGTGCAGGTTCTCGTGTGTGCTGCCACTTAATTCCCCTCTTGCTAAGTGGGG
AAGTGTTCGGGATGCAGGCAGAGATCAGCCTGACCCTGTTTGACCAGGAGCAGAGGAGGGAATG
CCTCAGTAACATAGTGATGGAAACTGAGAATCTGGCCTCCCCAGTCCTGCGCACTGTCTCCTTC
TGCACGACGGTAAAGGATGCCTTCCTTCAGGCTGAAGTCATCATCATCCTGGATGACAGCACGG
ACGAGGAAGTGTACAACATGGAGAGCTGCCTTCGAAGCAGGGTACCACTGTGCCGCCTCTATGG
TTACCTGATAGAGAAAAATGCTCACAAATCTGTCAAAGTCATCGTGGGAGGGAAAAGCTTTCTG
AATCTGAAAACAACTTTGCTCATACAATATGCACCTAGCCTCGCAAGCAACATCATCGCAGTGG
CTCTGGGGTTAGAAGGCCAAGCAAAAGCAGTACTGGCCCGAAAGATGAAAACAATTCCATCCAG
AATCAAAGATGTGATAATTTGGGGTAATATCACTGGAAATAACTACGTTGATCTGAGGAAAGCA
AAAGTTTACAACTATGAGAGTGCTATTAGGGGACCTCCTGGATATTACCACTCTGTGTTAAGCT
TGATTTTTGACAGAGAGTGGATAACAAAAGAGTTTGTGAGGACGCTTAAAGACTTGAGCAGCAC
TGGAAAACAATTTGGAGGCATTTTGGCAGCACACAGCATAGCCACCACCCTGAAGTACTGGTAC
TATGGCTCACCACCTGGAGAGATCGTTTCCTTGGGTGTAATGAGTGAAGGCCAGTTCGGCATTC
CTGAAGGGATTGTCTTTTCTATGCCAGTGAAATTTGAGAATGGAACTTGGGTGGTCCTTACTGA
TTTGGAAGACCTTTCGCTCAGCGAGAAGATAATAAACAGGCTCACAGGTGATCTGATTCAGGAG
AAACTTGTTGCATCTGGAGACTTATTAACTTTTCAACCAATTGAAGAAGATCCCAAAGATAACA
CGCCTTCTCCTACAGGCCTGAATGAAGAAAAGGAACAAGCTGAGTCTGACAGTCCCCTTTCAGT
CACTGAACCAAACCAAATGCAGGAAGCCTGGCTGGAGGAAGAGGGGAACAAAGACTCTGATGTA
AAACATGGGGACCGTGAAAAGCTTCAACCAGAACAAACATGACGGAAAGACAGAAAGACTGGCG
AGTGTCTGCACTTAGGGAAAAGCAATTAAATGAAACAGGCCCCAAACCTGGTAGAGTCACATCC
TACCACTTTTGCCAATTACTGTATGTCCTCAAAAACAAATGAACACAAACCACTGTTTTAAAGA
CTTTAACATAGTGTTGTCAATCATTGCATCTTTGCCTGGATGTCACCTATCTCCTACCTGACAT
TCTTTTAAAAAAAATTTTTTTTTGAGACAGGGTTTCACTGTGTAGCTTATGAATTCACTATTGG
CTCAAGCTAGCCTCAGACTCACAGAGATCCACCTGCCTCTGCTCCGAAGTACTGACTTCCACCT
GCTACTCTTTTTTATTTTTATTTTATGTATCTATTCTCTCATATCTTACATCCAACCCCAATTT
CCCCTCCCTCCTCTCCGCCCATAGTCCCCCTCTCCTCTTTCCACCAATCCATTCCTCCTTCTGT
ATCCCCGTTACTAGGAGTCTTAGGTCACCCTTATAGATTCCTGGGAGTTTCCATCACATTAAGT
TTCCACCTCATCCCCCTAAATCCTCCTCCCAATTCCAGGGAAAAGGGCAGGCCTCCCAGGGATA
TCATCCAGACATGGCATATTAAGTTGC

hide sequence

RefSeq Acc Id:

XM_017596470 ⟹ XP_017451959

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	9	70,403,614 - 70,449,042 (-)	NCBI

Sequence:

show sequence

AATTTAGCCGTGGATAATAGGGAGTAGAGCTGGAGTGCGCTTATAAAGACCATATATGGTTGTG
ACTGGAAACTCAAAGCCTTCAGGTAAAGCAAACTGCCCATATTATGCTAAGGCAGAACTTCTGG
CAGACTATTTACAAAAGAATCTTCCTGACTTTCGGATTTTTAAGATCACGAAACATCCTGACGA
GTGGGAGGAGTGGCTGGAAGATGTCTGTGAAAGGAATATGTGGGACCACAGAATCTCCCCCATT
ATCTGGAGAGAGTTGCTGGATCGTGGAGGCAAGGGCTTGCTTTTGGGAGGATACAATGAGTTTC
TGGAACATGCCCAGCTTTACTATGGCATCACTTCCAGCATGACGACAGAGCTGATGATGATCAT
CGCCCAAGAAAACATGGAGACACATACAGAACAAGAGTTAGATAAAGAAAACTTGAAAGACCTC
ATCAGTCCCTTGCAGGTCTGGATTACCAGTGCAGGTTCTCGTGTGTGCTGCCACTTAATTCCCC
TCTTGCTAAGTGGGGAAGTGTTCGGGATGCAGGCAGAGATCAGCCTGACCCTGTTTGACCAGGA
GCAGAGGAGGGAATGCCTCAGTAACATAGTGATGGAAACTGAGAATCTGGCCTCCCCAGTCCTG
CGCACTGTCTCCTTCTGCACGACGGTAAAGGATGCCTTCCTTCAGGCTGAAGTCATCATCATCC
TGGATGACAGCACGGACGAGGAAGTGTACAACATGGAGAGCTGCCTTCGAAGCAGGGTACCACT
GTGCCGCCTCTATGGTTACCTGATAGAGAAAAATGCTCACAAATCTGTCAAAGTCATCGTGGGA
GGGAAAAGCTTTCTGAATCTGAAAACAACTTTGCTCATACAATATGCACCTAGCCTCGCAAGCA
ACATCATCGCAGTGGCTCTGGGGTTAGAAGGCCAAGCAAAAGCAGTACTGGCCCGAAAGATGAA
AACAATTCCATCCAGAATCAAAGATGTGATAATTTGGGGTAATATCACTGGAAATAACTACGTT
GATCTGAGGAAAGCAAAAGTTTACAACTATGAGAGTGCTATTAGGGGACCTCCTGGATATTACC
ACTCTGTGTTAAGCTTGATTTTTGACAGAGAGTGGATAACAAAAGAGTTTGTGAGGACGCTTAA
AGACTTGAGCAGCACTGGAAAACAATTTGGAGGCATTTTGGCAGCACACAGCATAGCCACCACC
CTGAAGTACTGGTACTATGGCTCACCACCTGGAGAGATCGTTTCCTTGGGTGTAATGAGTGAAG
GCCAGTTCGGCATTCCTGAAGGGATTGTCTTTTCTATGCCAGTGAAATTTGAGAATGGAACTTG
GGTGGTCCTTACTGATTTGGAAGACCTTTCGCTCAGCGAGAAGATAATAAACAGGCTCACAGGT
GATCTGATTCAGGAGAAACTTGTTGCATCTGGAGACTTATTAACTTTTCAACCAATTGAAGAAG
ATCCCAAAGATAACACGCCTTCTCCTACAGGCCTGAATGAAGAAAAGGAACAAGCTGAGTCTGA
CAGTCCCCTTTCAGTCACTGAACCAAACCAAATGCAGGAAGCCTGGCTGGAGGAAGAGGGGAAC
AAAGACTCTGATGTAAAACATGGGGACCGTGAAAAGCTTCAACCAGAACAAACATGACGGAAAG
ACAGAAAGACTGGCGAGTGTCTGCACTTAGGGAAAAGCAATTAAATGAAACAGGCCCCAAACCT
GGTAGAGTCACATCCTACCACTTTTGCCAATTACTGTATGTCCTCAAAAACAAATGAACACAAA
CCACTGTTTTAAAGACTTTAACATAGTGTTGTCAATCATTGCATCTTTGCCTGGATGTCACCTA
TCTCCTACCTGACATTCTTTTAAAAAAAATTTTTTTTTGAGACAGGGTTTCACTGTGTAGCTTA
TGAATTCACTATTGGCTCAAGCTAGCCTCAGACTCACAGAGATCCACCTGCCTCTGCTCCGAAG
TACTGACTTCCACCTGCTACTCTTTTTTATTTTTATTTTATGTATCTATTCTCTCATATCTTAC
ATCCAACCCCAATTTCCCCTCCCTCCTCTCCGCCCATAGTCCCCCTCTCCTCTTTCCACCAATC
CATTCCTCCTTCTGTATCCCCGTTACTAGGAGTCTTAGGTCACCCTTATAGATTCCTGGGAGTT
TCCATCACATTAAGTTTCCACCTCATCCCCCTAAATCCTCCTCCCAATTCCAGGGAAAAGGGCA
GGCCTCCCAGGGATATCATCCAGACATGGCATATTAAGTTGC

hide sequence

RefSeq Acc Id:

XM_017596471 ⟹ XP_017451960

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	9	70,403,614 - 70,450,204 (-)	NCBI

Sequence:

show sequence

GCCTGCGCCAGCTTTAGTAGGCGCCGCGGTTGCCTGGAAACCGTGACGCCCGGGTTTCAGTTTC
TAGGTCTTGCTAGAAATCATGGCCAAATTTGTGATCGCCGGTAAAGCAAACTGCCCATATTATG
CTAAGGCAGAACTTCTGGCAGACTATTTACAAAAGAATCTTCCTGACTTTCGGATTTTTAAGAT
CACGAAACATCCTGACGAGTGGGAGGAGTGGCTGGAAGATGTCTGTGAAAGGAATATGTGGGAC
CACAGAATCTCCCCCATTATCTGGAGAGAGTTGCTGGATCGTGGAGGCAAGGGCTTGCTTTTGG
GAGGATACAATGAGTTTCTGGAACATGCCCAGCTTTACTATGGCATCACTTCCAGCATGACGAC
AGAGCTGATGATGATCATCGCCCAAGAAAACATGGAGACACATACAGAACAAGAGTTAGATAAA
GAAAACTTGAAAGACCTCATCAGTCCCTTGCAGGTCTGGATTACCAGTGCAGGTTCTCGTGTGT
GCTGCCACTTAATTCCCCTCTTGCTAAGTGGGGAAGTGTTCGGGATGCAGGCAGAGATCAGCCT
GACCCTGTTTGACCAGGAGCAGAGGAGGGAATGCCTCAGTAACATAGTGATGGAAACTGAGAAT
CTGGCCTCCCCAGTCCTGCGCACTGTCTCCTTCTGCACGACGGTAAAGGATGCCTTCCTTCAGG
CTGAAGTCATCATCATCCTGGATGACAGCACGGACGAGGAAGTGTACAACATGGAGAGCTGCCT
TCGAAGCAGGGTACCACTGTGCCGCCTCTATGGTTACCTGATAGAGAAAAATGCTCACAAATCT
GTCAAAGTCATCGTGGGAGGGAAAAGCTTTCTGAATCTGAAAACAACTTTGCTCATACAATATG
CACCTAGCCTCGCAAGCAACATCATCGCAGTGGCTCTGGGGTTAGAAGGCCAAGCAAAAGCAGT
ACTGGCCCGAAAGATGAAAACAATTCCATCCAGAATCAAAGATGTGATAATTTGGGGTAATATC
ACTGGAAATAACTACGTTGATCTGAGGAAAGCAAAAGTTTACAACTATGAGAGTGCTATTAGGG
GACCTCCTGGATATTACCACTCTGTGTTAAGCTTGATTTTTGACAGAGAGTGGATAACAAAAGA
GTTTGTGAGGACGCTTAAAGACTTGAGCAGCACTGGAAAACAATTTGGAGGCATTTTGGCAGCA
CACAGCATAGCCACCACCCTGAAGTACTGGTACTATGGCTCACCACCTGGAGAGATCGTTTCCT
TGGGTGTAATGAGTGAAGGCCAGTTCGGCATTCCTGAAGGGATTGTCTTTTCTATGCCAGTGAA
ATTTGAGAATGGAACTTGGGTGGTCCTTACTGATTTGGAAGACCTTTCGCTCAGCGAGAAGATA
ATAAACAGGCTCACAGGTGATCTGATTCAGGAGAAACTTGTTGCATCTGGAGACTTATTAACTT
TTCAACCAATTGAAGAAGATCCCAAAGATAACACGCCTTCTCCTACAGGCCTGAATGAAGAAAA
GGAACAAGCTGAGTCTGACAGTCCCCTTTCAGTCACTGAACCAAACCAAATGCAGGAAGCCTGG
CTGGAGGAAGAGGGGAACAAAGACTCTGATGTAAAACATGGGGACCGTGAAAAGCTTCAACCAG
AACAAACATGACGGAAAGACAGAAAGACTGGCGAGTGTCTGCACTTAGGGAAAAGCAATTAAAT
GAAACAGGCCCCAAACCTGGTAGAGTCACATCCTACCACTTTTGCCAATTACTGTATGTCCTCA
AAAACAAATGAACACAAACCACTGTTTTAAAGACTTTAACATAGTGTTGTCAATCATTGCATCT
TTGCCTGGATGTCACCTATCTCCTACCTGACATTCTTTTAAAAAAAATTTTTTTTTGAGACAGG
GTTTCACTGTGTAGCTTATGAATTCACTATTGGCTCAAGCTAGCCTCAGACTCACAGAGATCCA
CCTGCCTCTGCTCCGAAGTACTGACTTCCACCTGCTACTCTTTTTTATTTTTATTTTATGTATC
TATTCTCTCATATCTTACATCCAACCCCAATTTCCCCTCCCTCCTCTCCGCCCATAGTCCCCCT
CTCCTCTTTCCACCAATCCATTCCTCCTTCTGTATCCCCGTTACTAGGAGTCTTAGGTCACCCT
TATAGATTCCTGGGAGTTTCCATCACATTAAGTTTCCACCTCATCCCCCTAAATCCTCCTCCCA
ATTCCAGGGAAAAGGGCAGGCCTCCCAGGGATATCATCCAGACATGGCATATTAAGTTGC

hide sequence

RefSeq Acc Id:

XM_017596472 ⟹ XP_017451961

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	9	70,403,614 - 70,450,175 (-)	NCBI

Sequence:

show sequence

TTGCCTGGAAACCGTGACGCCCGGGTTTCAGTTTCTAGGTCTTGCTAGAAATCATGGCCAAATT
TGTGATCGCCGGAGTGGCTGGAAGATGTCTGTGAAAGGAATATGTGGGACCACAGAATCTCCCC
CATTATCTGGAGAGAGTTGCTGGATCGTGGAGGCAAGGGCTTGCTTTTGGGAGGATACAATGAG
TTTCTGGAACATGCCCAGCTTTACTATGGCATCACTTCCAGCATGACGACAGAGCTGATGATGA
TCATCGCCCAAGAAAACATGGAGACACATACAGAACAAGAGTTAGATAAAGAAAACTTGAAAGA
CCTCATCAGTCCCTTGCAGGTCTGGATTACCAGTGCAGGTTCTCGTGTGTGCTGCCACTTAATT
CCCCTCTTGCTAAGTGGGGAAGTGTTCGGGATGCAGGCAGAGATCAGCCTGACCCTGTTTGACC
AGGAGCAGAGGAGGGAATGCCTCAGTAACATAGTGATGGAAACTGAGAATCTGGCCTCCCCAGT
CCTGCGCACTGTCTCCTTCTGCACGACGGTAAAGGATGCCTTCCTTCAGGCTGAAGTCATCATC
ATCCTGGATGACAGCACGGACGAGGAAGTGTACAACATGGAGAGCTGCCTTCGAAGCAGGGTAC
CACTGTGCCGCCTCTATGGTTACCTGATAGAGAAAAATGCTCACAAATCTGTCAAAGTCATCGT
GGGAGGGAAAAGCTTTCTGAATCTGAAAACAACTTTGCTCATACAATATGCACCTAGCCTCGCA
AGCAACATCATCGCAGTGGCTCTGGGGTTAGAAGGCCAAGCAAAAGCAGTACTGGCCCGAAAGA
TGAAAACAATTCCATCCAGAATCAAAGATGTGATAATTTGGGGTAATATCACTGGAAATAACTA
CGTTGATCTGAGGAAAGCAAAAGTTTACAACTATGAGAGTGCTATTAGGGGACCTCCTGGATAT
TACCACTCTGTGTTAAGCTTGATTTTTGACAGAGAGTGGATAACAAAAGAGTTTGTGAGGACGC
TTAAAGACTTGAGCAGCACTGGAAAACAATTTGGAGGCATTTTGGCAGCACACAGCATAGCCAC
CACCCTGAAGTACTGGTACTATGGCTCACCACCTGGAGAGATCGTTTCCTTGGGTGTAATGAGT
GAAGGCCAGTTCGGCATTCCTGAAGGGATTGTCTTTTCTATGCCAGTGAAATTTGAGAATGGAA
CTTGGGTGGTCCTTACTGATTTGGAAGACCTTTCGCTCAGCGAGAAGATAATAAACAGGCTCAC
AGGTGATCTGATTCAGGAGAAACTTGTTGCATCTGGAGACTTATTAACTTTTCAACCAATTGAA
GAAGATCCCAAAGATAACACGCCTTCTCCTACAGGCCTGAATGAAGAAAAGGAACAAGCTGAGT
CTGACAGTCCCCTTTCAGTCACTGAACCAAACCAAATGCAGGAAGCCTGGCTGGAGGAAGAGGG
GAACAAAGACTCTGATGTAAAACATGGGGACCGTGAAAAGCTTCAACCAGAACAAACATGACGG
AAAGACAGAAAGACTGGCGAGTGTCTGCACTTAGGGAAAAGCAATTAAATGAAACAGGCCCCAA
ACCTGGTAGAGTCACATCCTACCACTTTTGCCAATTACTGTATGTCCTCAAAAACAAATGAACA
CAAACCACTGTTTTAAAGACTTTAACATAGTGTTGTCAATCATTGCATCTTTGCCTGGATGTCA
CCTATCTCCTACCTGACATTCTTTTAAAAAAAATTTTTTTTTGAGACAGGGTTTCACTGTGTAG
CTTATGAATTCACTATTGGCTCAAGCTAGCCTCAGACTCACAGAGATCCACCTGCCTCTGCTCC
GAAGTACTGACTTCCACCTGCTACTCTTTTTTATTTTTATTTTATGTATCTATTCTCTCATATC
TTACATCCAACCCCAATTTCCCCTCCCTCCTCTCCGCCCATAGTCCCCCTCTCCTCTTTCCACC
AATCCATTCCTCCTTCTGTATCCCCGTTACTAGGAGTCTTAGGTCACCCTTATAGATTCCTGGG
AGTTTCCATCACATTAAGTTTCCACCTCATCCCCCTAAATCCTCCTCCCAATTCCAGGGAAAAG
GGCAGGCCTCCCAGGGATATCATCCAGACATGGCATATTAAGTTGC

hide sequence

RefSeq Acc Id:

XM_017596473 ⟹ XP_017451962

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	9	70,403,612 - 70,449,774 (-)	NCBI

Sequence:

show sequence

GGGAGCATAAGGAATGGCAGGAGAGAAGGAACTAACTAGAGAGCTGTTAAAGGAACCACCTCCA
GATAAAGGTAAAGCAAACTGCCCATATTATGCTAAGGCAGAACTTCTGGCAGACTATTTACAAA
AGAATCTTCCTGACTTTCGGATTTTTAAGATCACGAAACATCCTGACGAGTGGGAGGAGTGGCT
GGAAGATGTCTGTGAAAGGAATATGTGGGACCACAGAATCTCCCCCATTATCTGGAGAGAGTTG
CTGGATCGTGGAGGCAAGGGCTTGCTTTTGGGAGGATACAATGAGTTTCTGGAACATGCCCAGC
TTTACTATGGCATCACTTCCAGCATGACGACAGAGCTGATGATGATCATCGCCCAAGAAAACAT
GGAGACACATACAGAACAAGAGTTAGATAAAGAAAACTTGAAAGACCTCATCAGTCCCTTGCAG
GTCTGGATTACCAGTGCAGGTTCTCGTGTGTGCTGCCACTTAATTCCCCTCTTGCTAAGTGGGG
AAGTGTTCGGGATGCAGGCAGAGATCAGCCTGACCCTGTTTGACCAGGAGCAGAGGAGGGAATG
CCTCAGTAACATAGTGATGGAAACTGAGAATCTGGCCTCCCCAGTCCTGCGCACTGTCTCCTTC
TGCACGACGGTAAAGGATGCCTTCCTTCAGGCTGAAGTCATCATCATCCTGGATGACAGCACGG
ACGAGGAAGTGTACAACATGGAGAGCTGCCTTCGAAGCAGGGTACCACTGTGCCGCCTCTATGG
TTACCTGATAGAGAAAAATGCTCACAAATCTGTCAAAGTCATCGTGGGAGGGAAAAGCTTTCTG
AATCTGAAAACAACTTTGCTCATACAATATGCACCTAGCCTCGCAAGCAACATCATCGCAGTGG
CTCTGGGGTTAGAAGGCCAAGCAAAAGCAGTACTGGCCCGAAAGATGAAAACAATTCCATCCAG
CCAGTTCGGCATTCCTGAAGGGATTGTCTTTTCTATGCCAGTGAAATTTGAGAATGGAACTTGG
GTGGTCCTTACTGATTTGGAAGACCTTTCGCTCAGCGAGAAGATAATAAACAGGCTCACAGGTG
ATCTGATTCAGGAGAAACTTGTTGCATCTGGAGACTTATTAACTTTTCAACCAATTGAAGAAGA
TCCCAAAGATAACACGCCTTCTCCTACAGGCCTGAATGAAGAAAAGGAACAAGCTGAGTCTGAC
AGTCCCCTTTCAGTCACTGAACCAAACCAAATGCAGGAAGCCTGGCTGGAGGAAGAGGGGAACA
AAGACTCTGATGTAAAACATGGGGACCGTGAAAAGCTTCAACCAGAACAAACATGACGGAAAGA
CAGAAAGACTGGCGAGTGTCTGCACTTAGGGAAAAGCAATTAAATGAAACAGGCCCCAAACCTG
GTAGAGTCACATCCTACCACTTTTGCCAATTACTGTATGTCCTCAAAAACAAATGAACACAAAC
CACTGTTTTAAAGACTTTAACATAGTGTTGTCAATCATTGCATCTTTGCCTGGATGTCACCTAT
CTCCTACCTGACATTCTTTTAAAAAAAATTTTTTTTTGAGACAGGGTTTCACTGTGTAGCTTAT
GAATTCACTATTGGCTCAAGCTAGCCTCAGACTCACAGAGATCCACCTGCCTCTGCTCCGAAGT
ACTGACTTCCACCTGCTACTCTTTTTTATTTTTATTTTATGTATCTATTCTCTCATATCTTACA
TCCAACCCCAATTTCCCCTCCCTCCTCTCCGCCCATAGTCCCCCTCTCCTCTTTCCACCAATCC
ATTCCTCCTTCTGTATCCCCGTTACTAGGAGTCTTAGGTCACCCTTATAGATTCCTGGGAGTTT
CCATCACATTAAGTTTCCACCTCATCCCCCTAAATCCTCCTCCCAATTCCAGGGAAAAGGGCAG
GCCTCCCAGGGATATCATCCAGACATGGCATATTAAGTTGCAG

hide sequence

Protein Sequences


Protein RefSeqs	NP_001101691	(Get FASTA)	NCBI Sequence Viewer
	XP_017451958	(Get FASTA)	NCBI Sequence Viewer
	XP_017451959	(Get FASTA)	NCBI Sequence Viewer
	XP_017451960	(Get FASTA)	NCBI Sequence Viewer
	XP_017451961	(Get FASTA)	NCBI Sequence Viewer
	XP_017451962	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL98891	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001101691 ⟸ NM_001108221

- UniProtKB:

D3Z861 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAKFVIAGKANCPYYAKAELLADYLQKNLPDFRIFKITKHPDEWEEWLEDVCERNMWDHRISPI
IWRELLDRGGKGLLLGGYNEFLEHAQLYYGITSSMTTELMMIIAQENMETHTEQELDKENLKDL
ISPLQVWITSAGSRVCCHLIPLLLSGEVFGMQAEISLTLFDQEQRRECLSNIVMETENLASPVL
RTVSFCTTVKDAFLQAEVIIILDDSTDEEVYNMESCLRSRVPLCRLYGYLIEKNAHKSVKVIVG
GKSFLNLKTTLLIQYAPSLASNIIAVALGLEGQAKAVLARKMKTIPSRIKDVIIWGNITGNNYV
DLRKAKVYNYESAIRGPPGYYHSVLSLIFDREWITKEFVRTLKDLSSTGKQFGGILAAHSIATT
LKYWYYGSPPGEIVSLGVMSEGQFGIPEGIVFSMPVKFENGTWVVLTDLEDLSLSEKIINRLTG
DLIQEKLVASGDLLTFQPIEEDSDVKHGDREKLQPEQT

hide sequence

RefSeq Acc Id:

XP_017451962 ⟸ XM_017596473

- Peptide Label:

isoform X5

- Sequence:

show sequence

MAGEKELTRELLKEPPPDKGKANCPYYAKAELLADYLQKNLPDFRIFKITKHPDEWEEWLEDVC
ERNMWDHRISPIIWRELLDRGGKGLLLGGYNEFLEHAQLYYGITSSMTTELMMIIAQENMETHT
EQELDKENLKDLISPLQVWITSAGSRVCCHLIPLLLSGEVFGMQAEISLTLFDQEQRRECLSNI
VMETENLASPVLRTVSFCTTVKDAFLQAEVIIILDDSTDEEVYNMESCLRSRVPLCRLYGYLIE
KNAHKSVKVIVGGKSFLNLKTTLLIQYAPSLASNIIAVALGLEGQAKAVLARKMKTIPSSQFGI
PEGIVFSMPVKFENGTWVVLTDLEDLSLSEKIINRLTGDLIQEKLVASGDLLTFQPIEEDPKDN
TPSPTGLNEEKEQAESDSPLSVTEPNQMQEAWLEEEGNKDSDVKHGDREKLQPEQT

hide sequence

RefSeq Acc Id:

XP_017451960 ⟸ XM_017596471

- Peptide Label:

isoform X3

- Sequence:

show sequence

MAKFVIAGKANCPYYAKAELLADYLQKNLPDFRIFKITKHPDEWEEWLEDVCERNMWDHRISPI
IWRELLDRGGKGLLLGGYNEFLEHAQLYYGITSSMTTELMMIIAQENMETHTEQELDKENLKDL
ISPLQVWITSAGSRVCCHLIPLLLSGEVFGMQAEISLTLFDQEQRRECLSNIVMETENLASPVL
RTVSFCTTVKDAFLQAEVIIILDDSTDEEVYNMESCLRSRVPLCRLYGYLIEKNAHKSVKVIVG
GKSFLNLKTTLLIQYAPSLASNIIAVALGLEGQAKAVLARKMKTIPSRIKDVIIWGNITGNNYV
DLRKAKVYNYESAIRGPPGYYHSVLSLIFDREWITKEFVRTLKDLSSTGKQFGGILAAHSIATT
LKYWYYGSPPGEIVSLGVMSEGQFGIPEGIVFSMPVKFENGTWVVLTDLEDLSLSEKIINRLTG
DLIQEKLVASGDLLTFQPIEEDPKDNTPSPTGLNEEKEQAESDSPLSVTEPNQMQEAWLEEEGN
KDSDVKHGDREKLQPEQT

hide sequence

RefSeq Acc Id:

XP_017451961 ⟸ XM_017596472

- Peptide Label:

isoform X4

- Sequence:

show sequence

MWDHRISPIIWRELLDRGGKGLLLGGYNEFLEHAQLYYGITSSMTTELMMIIAQENMETHTEQE
LDKENLKDLISPLQVWITSAGSRVCCHLIPLLLSGEVFGMQAEISLTLFDQEQRRECLSNIVME
TENLASPVLRTVSFCTTVKDAFLQAEVIIILDDSTDEEVYNMESCLRSRVPLCRLYGYLIEKNA
HKSVKVIVGGKSFLNLKTTLLIQYAPSLASNIIAVALGLEGQAKAVLARKMKTIPSRIKDVIIW
GNITGNNYVDLRKAKVYNYESAIRGPPGYYHSVLSLIFDREWITKEFVRTLKDLSSTGKQFGGI
LAAHSIATTLKYWYYGSPPGEIVSLGVMSEGQFGIPEGIVFSMPVKFENGTWVVLTDLEDLSLS
EKIINRLTGDLIQEKLVASGDLLTFQPIEEDPKDNTPSPTGLNEEKEQAESDSPLSVTEPNQMQ
EAWLEEEGNKDSDVKHGDREKLQPEQT

hide sequence

RefSeq Acc Id:

XP_017451958 ⟸ XM_017596469

- Peptide Label:

isoform X1

- Sequence:

show sequence

MAGEKELTRELLKEPPPDKGKANCPYYAKAELLADYLQKNLPDFRIFKITKHPDEWEEWLEDVC
ERNMWDHRISPIIWRELLDRGGKGLLLGGYNEFLEHAQLYYGITSSMTTELMMIIAQENMETHT
EQELDKENLKDLISPLQVWITSAGSRVCCHLIPLLLSGEVFGMQAEISLTLFDQEQRRECLSNI
VMETENLASPVLRTVSFCTTVKDAFLQAEVIIILDDSTDEEVYNMESCLRSRVPLCRLYGYLIE
KNAHKSVKVIVGGKSFLNLKTTLLIQYAPSLASNIIAVALGLEGQAKAVLARKMKTIPSRIKDV
IIWGNITGNNYVDLRKAKVYNYESAIRGPPGYYHSVLSLIFDREWITKEFVRTLKDLSSTGKQF
GGILAAHSIATTLKYWYYGSPPGEIVSLGVMSEGQFGIPEGIVFSMPVKFENGTWVVLTDLEDL
SLSEKIINRLTGDLIQEKLVASGDLLTFQPIEEDPKDNTPSPTGLNEEKEQAESDSPLSVTEPN
QMQEAWLEEEGNKDSDVKHGDREKLQPEQT

hide sequence

RefSeq Acc Id:	XP_017451959 ⟸ XM_017596470
- Peptide Label:	isoform X2
- UniProtKB:	A0A0G2JVU8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVVTGNSKPSGKANCPYYAKAELLADYLQKNLPDFRIFKITKHPDEWEEWLEDVCERNMWDHRI SPIIWRELLDRGGKGLLLGGYNEFLEHAQLYYGITSSMTTELMMIIAQENMETHTEQELDKENL KDLISPLQVWITSAGSRVCCHLIPLLLSGEVFGMQAEISLTLFDQEQRRECLSNIVMETENLAS PVLRTVSFCTTVKDAFLQAEVIIILDDSTDEEVYNMESCLRSRVPLCRLYGYLIEKNAHKSVKV IVGGKSFLNLKTTLLIQYAPSLASNIIAVALGLEGQAKAVLARKMKTIPSRIKDVIIWGNITGN NYVDLRKAKVYNYESAIRGPPGYYHSVLSLIFDREWITKEFVRTLKDLSSTGKQFGGILAAHSI ATTLKYWYYGSPPGEIVSLGVMSEGQFGIPEGIVFSMPVKFENGTWVVLTDLEDLSLSEKIINR LTGDLIQEKLVASGDLLTFQPIEEDPKDNTPSPTGLNEEKEQAESDSPLSVTEPNQMQEAWLEE EGNKDSDVKHGDREKLQPEQT hide sequence

RefSeq Acc Id:

ENSRNOP00000017207 ⟸ ENSRNOT00000017207

RefSeq Acc Id:

ENSRNOP00000069626 ⟸ ENSRNOT00000086391

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13696714

Promoter ID:

EPDNEW_R7238

Type:

single initiation site

Name:

Mdh1b_1

Description:

malate dehydrogenase 1B

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	9	70,450,146 - 70,450,206	EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN/SsN (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Buf/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

F344/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

FHH/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

GH/OmrMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/Ox (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LE/Stm (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

M520/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MHS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

SBH/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHRSP/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Damaging Variants

Assembly: Rnor_5.0

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain
9	72137076	72137077	A	G	snv	GH/OmrMcwi (MCW), ZFDM (KyushuU), SBN/Ygl (MCW), BBDP/WorN (KNAW), SBH/Ygl (KNAW), SBN/Ygl (KNAW), SHR/NCrlPrin (KNAW), SHR/NHsd (KNAW), SHR/OlaIpcv (KNAW), SHR/OlaIpcvPrin (KNAW), SHRSP/Gcrc (KNAW), WKY/Gcrc (KNAW), BUF/N (KNAW), DA/BklArbNsi (KNAW), LEW/Crl (KNAW), LEW/NCrl (KNAW), MNS/Gib (KNAW), SDLEF7/Barth (UDEL), LE/OrlBarth (UDEL), Crl:SD (UDEL), IS/Kyo (KyushuU), BUF/MNa (KyushuU), RCS/Kyo (KyushuU), IS-Tlk/Kyo (KyushuU), HWY/Slc (KyushuU), BDIX/NemOda (KyushuU), DOB/Oda (KyushuU), BDIX.Cg-Tal/NemOda (KyushuU), ZF (KyushuU), SBH/Ygl (MCW)

Assembly: Rnor_6.0

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain
9	70436168	70436169	T	C	snv	GH/OmrMcwi (MCW), WKY/Gcrc (RGD), SBN/Ygl (MCW), CDR, CDS, Buf/N (MCW), BBDP/Wor (RGD), LEW/Crl (RGD), LEW/NCrlBR (RGD), MNS/Gib (RGD), SBH/Ygl (RGD), SBN/Ygl (RGD), SHR/NHsd (RGD), SHRSP/Gcrc (RGD), SBH/Ygl (MCW)

Assembly: RGSC_v3.4

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain
9	62403848	62403849	T	C	snv	SHR/OlaIpcv (ICL), DA/BklArbNsi (ICAHN), BUF/N (KNAW), SHR/OlaIpcv (KNAW), GH/OmrMcwi (MCW), BBDP/WorN (ICL), LEW/Crl (ICL), LEW/NCrl (ICL), MNS/Gib (ICL), SBH/Ygl (ICL), SBN/Ygl (ICL), SHR/OlaIpcv (ICL), SHR/NHsd (ICL), SHRSP/Gcrc (ICL), WKY/Gcrc (ICL), SHRSP/Gcrc (MDC), LCR/1Mco (UMich), LCR/2Mco (UMich)
9	62413514	62413515	C	A	snv	LCR/1Mco (UMich)

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1307874	AgrOrtholog
Ensembl Genes	ENSRNOG00000012891	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000017207	ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOP00000069626	ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000017207	ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOT00000086391	ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH	3.90.110.10	UniProtKB/TrEMBL
InterPro	Lactate_DH/Glyco_Ohase_4_C	UniProtKB/TrEMBL
	Malate_DH_SF1	UniProtKB/TrEMBL
	NAD(P)-bd_dom_sf	UniProtKB/TrEMBL
KEGG Report	rno:316444	UniProtKB/TrEMBL
NCBI Gene	316444	ENTREZGENE
PANTHER	MDH_SF1	UniProtKB/TrEMBL
PhenoGen	Mdh1b	PhenoGen
Superfamily-SCOP	Lactate_DH/Glyco_hydro_4_C	UniProtKB/TrEMBL
	SSF51735	UniProtKB/TrEMBL
UniGene	Rn.102913	ENTREZGENE
UniProt	A0A0G2JVU8	ENTREZGENE, UniProtKB/TrEMBL
	D3Z861	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-02-19	Mdh1b	malate dehydrogenase 1B	Mdh1b	malate dehydrogenase 1B, NAD (soluble)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Mdh1b	malate dehydrogenase 1B, NAD (soluble)	Mdh1b_predicted	malate dehydrogenase 1B, NAD (soluble) (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Mdh1b_predicted	malate dehydrogenase 1B, NAD (soluble) (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar