Unc80 (unc-80 homolog, NALCN channel complex subunit) - Rat Genome Database

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Gene: Unc80 (unc-80 homolog, NALCN channel complex subunit) Rattus norvegicus
Analyze
Symbol: Unc80
Name: unc-80 homolog, NALCN channel complex subunit
RGD ID: 1309976
Description: Predicted to have cation channel activity. Predicted to be involved in cation homeostasis. Predicted to localize to axon and cation channel complex. Orthologous to human UNC80 (unc-80 homolog, NALCN channel complex subunit); INTERACTS WITH 2,2',4,4'-Tetrabromodiphenyl ether; bisphenol A; decabromodiphenyl ether.
Type: protein-coding
RefSeq Status: MODEL
Also known as: LOC316460; LOC689982; LOC689991; LOC689998; LOW QUALITY PROTEIN: protein unc-80 homolog; ribulose-5-phosphate-3-epimerase; Rpe; similar to CG18437-PA; unc-80 homolog; unc-80 homolog (C. elegans); unc-80 homolog, NALCN activator
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2968,011,940 - 68,190,135 (+)NCBI
Rnor_6.0 Ensembl973,493,027 - 73,683,000 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0973,492,907 - 73,686,578 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0973,616,239 - 73,807,462 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4965,289,560 - 65,465,731 (+)NCBIRGSC3.4rn4RGSC3.4
Celera965,492,937 - 65,670,906 (+)NCBICelera
Cytogenetic Map9q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References


Genomics

Comparative Map Data
Unc80
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2968,011,940 - 68,190,135 (+)NCBI
Rnor_6.0 Ensembl973,493,027 - 73,683,000 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0973,492,907 - 73,686,578 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0973,616,239 - 73,807,462 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4965,289,560 - 65,465,731 (+)NCBIRGSC3.4rn4RGSC3.4
Celera965,492,937 - 65,670,906 (+)NCBICelera
Cytogenetic Map9q32NCBI
UNC80
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl2209,771,832 - 209,999,300 (+)EnsemblGRCh38hg38GRCh38
GRCh382209,771,832 - 209,999,299 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh372210,636,556 - 210,864,020 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362210,344,962 - 210,369,516 (+)NCBINCBI36hg18NCBI36
Build 342210,462,222 - 210,486,777NCBI
Celera2204,404,518 - 204,632,058 (+)NCBI
Cytogenetic Map2q34NCBI
HuRef2202,481,632 - 202,708,824 (+)NCBIHuRef
CHM1_12210,642,543 - 210,870,219 (+)NCBICHM1_1
Unc80
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39166,507,093 - 66,738,309 (+)NCBIGRCm39mm39
GRCm39 Ensembl166,507,526 - 66,738,307 (+)Ensembl
GRCm38166,467,915 - 66,699,150 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl166,468,367 - 66,699,148 (+)EnsemblGRCm38mm10GRCm38
MGSCv37166,515,021 - 66,745,722 (+)NCBIGRCm37mm9NCBIm37
MGSCv36166,438,140 - 66,633,074 (+)NCBImm8
Celera166,990,322 - 67,213,375 (+)NCBICelera
Cytogenetic Map1C3NCBI
Unc80
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554575,442,502 - 5,649,086 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554575,445,255 - 5,649,286 (-)NCBIChiLan1.0ChiLan1.0
UNC80
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12B215,434,345 - 215,660,429 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B215,434,343 - 215,660,423 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02B97,029,102 - 97,257,181 (+)NCBIMhudiblu_PPA_v0panPan3
UNC80
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13717,648,432 - 17,864,915 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3717,649,104 - 17,861,277 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3718,529,606 - 18,745,484 (+)NCBI
ROS_Cfam_1.03717,584,471 - 17,802,797 (+)NCBI
UMICH_Zoey_3.13717,539,925 - 17,751,895 (+)NCBI
UNSW_CanFamBas_1.03717,502,709 - 17,717,984 (+)NCBI
UU_Cfam_GSD_1.03717,517,081 - 17,732,444 (+)NCBI
Unc80
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303166,141,759 - 166,330,568 (+)NCBI
SpeTri2.0NW_004936845268,357 - 454,557 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UNC80
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15112,491,468 - 112,714,876 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115112,463,832 - 112,717,510 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215124,213,160 - 124,437,606 (+)NCBISscrofa10.2Sscrofa10.2susScr3
UNC80
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11095,462,153 - 95,700,498 (+)NCBI
ChlSab1.1 Ensembl1095,462,834 - 95,700,514 (+)Ensembl
Vero_WHO_p1.0NW_023666040103,654,570 - 103,884,461 (-)NCBI
Unc80
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247656,223,853 - 6,443,564 (-)NCBI

Position Markers
D9Got72  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2968,158,390 - 68,158,588 (+)MAPPER
Rnor_6.0973,654,833 - 73,655,030NCBIRnor6.0
Rnor_5.0973,647,576 - 73,647,773UniSTSRnor5.0
RGSC_v3.4965,437,310 - 65,437,508RGDRGSC3.4
RGSC_v3.4965,437,311 - 65,437,508UniSTSRGSC3.4
RGSC_v3.1965,584,293 - 65,584,490RGD
Celera965,639,162 - 65,639,359UniSTS
RH 3.4 Map9604.9UniSTS
RH 3.4 Map9604.9RGD
RH 2.0 Map9649.9RGD
Cytogenetic Map9q32UniSTS
RH138119  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2968,046,945 - 68,047,066 (-)MAPPER
mRatBN7.2968,046,945 - 68,047,066 (+)MAPPER
Rnor_6.0973,528,792 - 73,528,912NCBIRnor6.0
Rnor_6.0972,665,120 - 72,665,240NCBIRnor6.0
Rnor_5.0973,771,317 - 73,771,437UniSTSRnor5.0
Rnor_5.0974,623,476 - 74,623,596UniSTSRnor5.0
RGSC_v3.4965,325,019 - 65,325,139UniSTSRGSC3.4
Celera965,527,789 - 65,527,909UniSTS
RH 3.4 Map9596.0UniSTS
Cytogenetic Map9q32UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10054125Srcrt7Stress Responsive Cort QTL 73.330.0011blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)9105522293442944Rat
70186Niddm26Non-insulin dependent diabetes mellitus QTL 263.87blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)92569234292741406Rat
7207814Bmd91Bone mineral density QTL 913.5femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)92748615588333183Rat
70218Cm28Cardiac mass QTL 288.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)92907507983686404Rat
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)929075079122095297Rat
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)929466970107878528Rat
1641894Alcrsp12Alcohol response QTL 12response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)93238513377385133Rat
7411571Bw138Body weight QTL 13814.30.001body mass (VT:0001259)body weight gain (CMO:0000420)93764235182642351Rat
7411656Foco26Food consumption QTL 269.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)93764235182642351Rat
1598834Memor11Memory QTL 112.5exploratory behavior trait (VT:0010471)average horizontal distance in proximity to the target during voluntary locomotion in an experimental apparatus (CMO:0002674)94126103490024806Rat
8662828Vetf6Vascular elastic tissue fragility QTL 63.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)94126103498606834Rat
2290450Scl57Serum cholesterol level QTL 574.15blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)941261034102531865Rat
6903941Pur31Proteinuria QTL 310.036total urine protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)94657976991579769Rat
11353949Bp393Blood pressure QTL 393arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94657976991579769Rat
61352Bp34Blood pressure QTL 345arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94695242783686153Rat
10058949Gmadr5Adrenal mass QTL 520.014adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)94724896594124663Rat
631656Bp108Blood pressure QTL 1085.970.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)95417754299177542Rat
1598849Memor17Memory QTL 172.2exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)95488504176677636Rat
2303170Bp332Blood pressure QTL 3323.730.027arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)96081029882732466Rat
1578760Cm53Cardiac mass QTL 533.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)961186278106186278Rat
2303180Bp333Blood pressure QTL 3330.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)96173092382890620Rat
2303180Bp333Blood pressure QTL 3330.001arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)96173092382890620Rat
2303180Bp333Blood pressure QTL 3330.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)96173092382890620Rat
724515Uae16Urinary albumin excretion QTL 168urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)963270073107878387Rat
1300134Bp185Blood pressure QTL 1853.73arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)966757444112943287Rat
1581580Uae34Urinary albumin excretion QTL 34urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)96745166499920892Rat
1578757Pur6Proteinuria QTL 63.30.005total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)96745166499920892Rat
61385Edpm9Estrogen-dependent pituitary mass QTL 93.430.05pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)970241351115241351Rat
731171Glom6Glomerulus QTL 62.80.0003kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)970942881115942881Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:97
Count of miRNA genes:77
Interacting mature miRNAs:81
Transcripts:ENSRNOT00000032430
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 38
Low 2 16 8 8 34 21
Below cutoff 3 24 21 14 14 14 6 6 2 26 20 8 6

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000032430   ⟹   ENSRNOP00000035988
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl973,529,612 - 73,683,000 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000074427   ⟹   ENSRNOP00000064149
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl973,493,027 - 73,521,913 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000084340   ⟹   ENSRNOP00000074546
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl973,528,681 - 73,529,120 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000089478   ⟹   ENSRNOP00000068926
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl973,493,027 - 73,528,829 (+)Ensembl
RefSeq Acc Id: XM_003754536   ⟹   XP_003754584
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera965,492,937 - 65,670,906 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008767349   ⟹   XP_008765571
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0973,492,907 - 73,686,578 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039084598   ⟹   XP_038940526
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2968,011,940 - 68,190,135 (+)NCBI
RefSeq Acc Id: XM_039084599   ⟹   XP_038940527
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2968,011,940 - 68,186,556 (+)NCBI
RefSeq Acc Id: XM_039084600   ⟹   XP_038940528
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2968,011,940 - 68,186,556 (+)NCBI
RefSeq Acc Id: XM_039084601   ⟹   XP_038940529
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2968,011,940 - 68,186,556 (+)NCBI
RefSeq Acc Id: XM_039084602   ⟹   XP_038940530
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2968,011,940 - 68,186,556 (+)NCBI
Reference Sequences
RefSeq Acc Id: XP_008765571   ⟸   XM_008767349
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_003754584   ⟸   XM_003754536
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSRNOP00000068926   ⟸   ENSRNOT00000089478
RefSeq Acc Id: ENSRNOP00000035988   ⟸   ENSRNOT00000032430
RefSeq Acc Id: ENSRNOP00000064149   ⟸   ENSRNOT00000074427
RefSeq Acc Id: ENSRNOP00000074546   ⟸   ENSRNOT00000084340
RefSeq Acc Id: XP_038940526   ⟸   XM_039084598
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038940529   ⟸   XM_039084601
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038940527   ⟸   XM_039084599
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038940528   ⟸   XM_039084600
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038940530   ⟸   XM_039084602
- Peptide Label: isoform X5
Protein Domains
UNC80

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHRSP/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309976 AgrOrtholog
Ensembl Genes ENSRNOG00000028362 Ensembl, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000035988 UniProtKB/TrEMBL
  ENSRNOP00000064149 UniProtKB/TrEMBL
  ENSRNOP00000068926 UniProtKB/TrEMBL
  ENSRNOP00000074546 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000032430 UniProtKB/TrEMBL
  ENSRNOT00000074427 UniProtKB/TrEMBL
  ENSRNOT00000084340 UniProtKB/TrEMBL
  ENSRNOT00000089478 UniProtKB/TrEMBL
InterPro UNC80_N UniProtKB/TrEMBL
NCBI Gene 689991 ENTREZGENE
Pfam UNC80 UniProtKB/TrEMBL
PhenoGen Unc80 PhenoGen
UniProt A0A0G2JU17_RAT UniProtKB/TrEMBL
  A0A0G2K8B8_RAT UniProtKB/TrEMBL
  D3ZXX3_RAT UniProtKB/TrEMBL
  M0R470_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-06-12 Unc80  unc-80 homolog, NALCN channel complex subunit  Unc80  unc-80 homolog, NALCN activator  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2015-11-25 Unc80  unc-80 homolog, NALCN activator  Unc80  unc-80 homolog (C. elegans)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2015-11-09 Unc80  unc-80 homolog (C. elegans)  LOC689991  similar to CG18437-PA  Data Merged 737654 APPROVED
2015-07-29 LOC689991  similar to CG18437-PA  LOC689982  similar to CG18437-PA  Data Merged 737654 PROVISIONAL
2015-07-29 LOC689991  similar to CG18437-PA  LOC689998  similar to CG18437-PA  Data Merged 737654 PROVISIONAL
2010-11-19 Unc80  unc-80 homolog (C. elegans)  LOC316460  similar to CG18437-PA  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-05-05 LOC316460  similar to CG18437-PA  Rpe_predicted  ribulose-5-phosphate-3-epimerase (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-19 LOC689982  similar to CG18437-PA      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC689991  similar to CG18437-PA      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC689998  similar to CG18437-PA      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-01-12 Rpe_predicted  ribulose-5-phosphate-3-epimerase (predicted)      Symbol and Name status set to approved 70820 APPROVED