Advanced Search (OLGA)

Gene: Cyp20a1 (cytochrome P450, family 20, subfamily a, polypeptide 1) Rattus norvegicus

Analyze

Symbol:

Cyp20a1

Name:

cytochrome P450, family 20, subfamily a, polypeptide 1

RGD ID:

735221

Description:

Predicted to enable several functions, including heme binding activity; iron ion binding activity; and monooxygenase activity. Predicted to be located in membrane. Orthologous to human CYP20A1 (cytochrome P450 family 20 subfamily A member 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 2,6-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

cytochrome P450 20A1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	69,249,841 - 69,299,146 (+)	NCBI		GRCr8
mRatBN7.2	9	61,755,804 - 61,805,123 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	61,755,790 - 61,805,123 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	70,257,758 - 70,307,021 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	75,373,325 - 75,422,592 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	73,692,027 - 73,741,293 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	67,130,222 - 67,179,693 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	67,130,259 - 67,179,692 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	66,943,519 - 66,993,518 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	58,907,503 - 58,973,287 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	9	59,054,484 - 59,120,268 (+)	NCBI
Celera	9	59,185,997 - 59,234,590 (+)	NCBI		Celera
Cytogenetic Map	9	q32	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autoimmune lymphoproliferative syndrome type 2B (ISO)

Autoimmune Lymphoproliferative Syndrome, Type V (ISO)

common variable immunodeficiency 1 (ISO)

Neurodevelopmental Disorders (ISO)

primary pulmonary hypertension (ISO)

Pulmonary Arterial Hypertension (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1,2-dimethylhydrazine (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrotoluene (EXP)

2,6-dinitrotoluene (EXP)

2-palmitoylglycerol (ISO)

4-hydroxyphenyl retinamide (ISO)

5-aza-2'-deoxycytidine (ISO)

6-propyl-2-thiouracil (EXP)

all-trans-retinoic acid (ISO)

amitrole (EXP)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

butanal (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

carnosic acid (ISO)

chromium(6+) (ISO)

cisplatin (ISO)

crocidolite asbestos (ISO)

cyclosporin A (ISO)

diethylstilbestrol (ISO)

endosulfan (ISO)

finasteride (EXP)

fipronil (EXP,ISO)

flutamide (EXP)

folic acid (ISO)

gallic acid (ISO)

gentamycin (EXP)

hypochlorous acid (ISO)

methapyrilene (EXP)

methimazole (EXP)

methoxychlor (EXP)

methyl methanesulfonate (ISO)

monosodium L-glutamate (ISO)

N,N-diethyl-m-toluamide (ISO)

nefazodone (EXP)

nimesulide (EXP)

paracetamol (EXP,ISO)

PCB138 (ISO)

pentachlorophenol (ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenobarbital (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

succimer (ISO)

sulfadimethoxine (EXP)

sunitinib (ISO)

tetrachloromethane (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

membrane (IEA)

Molecular Function

heme binding (IEA)

iron ion binding (IEA)

monooxygenase activity (IEA)

oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (IEA)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
2.	GOA pipeline	RGD automated data pipeline
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
4.	Information Derived from GenBank Report	RGD, Sept. 2003
5.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:19946888

Genomics

Comparative Map Data

Cyp20a1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	69,249,841 - 69,299,146 (+)	NCBI		GRCr8
mRatBN7.2	9	61,755,804 - 61,805,123 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	61,755,790 - 61,805,123 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	70,257,758 - 70,307,021 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	75,373,325 - 75,422,592 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	73,692,027 - 73,741,293 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	67,130,222 - 67,179,693 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	67,130,259 - 67,179,692 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	66,943,519 - 66,993,518 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	58,907,503 - 58,973,287 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	9	59,054,484 - 59,120,268 (+)	NCBI
Celera	9	59,185,997 - 59,234,590 (+)	NCBI		Celera
Cytogenetic Map	9	q32	NCBI

CYP20A1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	203,239,018 - 203,306,026 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	203,238,977 - 203,306,026 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	204,103,741 - 204,170,749 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	203,811,409 - 203,878,808 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	2	197,856,120 - 197,924,954 (+)	NCBI		Celera
Cytogenetic Map	2	q33.2	NCBI
HuRef	2	195,951,328 - 196,018,059 (+)	NCBI		HuRef
CHM1_1	2	204,109,760 - 204,177,160 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	2	203,720,529 - 203,787,984 (+)	NCBI		T2T-CHM13v2.0

Cyp20a1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	60,382,459 - 60,427,219 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	60,382,482 - 60,427,219 (+)	Ensembl		GRCm39 Ensembl
GRCm38	1	60,343,300 - 60,388,060 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	60,343,323 - 60,388,060 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	60,400,216 - 60,444,231 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	60,287,918 - 60,331,933 (+)	NCBI		MGSCv36	mm8
Celera	1	60,859,068 - 60,903,156 (+)	NCBI		Celera
Cytogenetic Map	1	C2	NCBI
cM Map	1	30.47	NCBI

LOC102029370
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955457	11,584,584 - 11,647,153 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955457	11,585,851 - 11,646,764 (-)	NCBI	ChiLan1.0	ChiLan1.0

CYP20A1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	13	105,844,450 - 105,911,839 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2B	105,858,543 - 105,926,607 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2B	90,473,024 - 90,539,177 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2B	208,615,273 - 208,672,731 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2B	208,615,273 - 208,672,731 (+)	Ensembl	panpan1.1		panPan2

CYP20A1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	37	12,085,566 - 12,141,061 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	37	12,086,749 - 12,140,228 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	37	12,967,700 - 13,025,439 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	37	12,021,984 - 12,079,777 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	37	12,022,000 - 12,079,780 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	37	11,977,955 - 12,035,702 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	37	11,949,094 - 12,006,838 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	37	11,943,390 - 12,001,145 (+)	NCBI		UU_Cfam_GSD_1.0

LOC101964504
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	160,264,790 - 160,325,537 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936726	2,235,361 - 2,298,775 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936726	2,234,611 - 2,295,527 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CYP20A1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	10	88,986,394 - 89,051,344 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	10	88,987,016 - 89,042,537 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666040	110,330,792 - 110,397,954 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

LOC101700295
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624765	13,105,816 - 13,159,574 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624765	13,108,937 - 13,159,580 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Cyp20a1
245 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	57
Count of miRNA genes:	49
Interacting mature miRNAs:	53
Transcripts:	ENSRNOT00000023796
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
7411571	Bw138	Body weight QTL 138	14.3	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	9	32535505	77535505	Rat
11353957	Bmd92	Bone mineral density QTL 92		0.01	tibia mineral mass (VT:1000283)	volumetric bone mineral density (CMO:0001553)	9	46114199	91114199	Rat
631680	Cm11	Cardiac mass QTL 11	3.1	0.00089	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	9	20430519	65430519	Rat
70218	Cm28	Cardiac mass QTL 28	8.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	9	25268044	79271759	Rat
724544	Uae9	Urinary albumin excretion QTL 9	4.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	9	25268044	114175309	Rat
1578760	Cm53	Cardiac mass QTL 53	3.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	9	56771635	101771635	Rat
631643	Bp120	Blood pressure QTL 120	3	0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	22071200	67071200	Rat
12879506	Pur33	Proteinuria QTL 33			urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	9	44649921	89649921	Rat
731164	Uae25	Urinary albumin excretion QTL 25	3.5	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	25661188	100929786	Rat
1598849	Memor17	Memory QTL 17	2.2		exploratory behavior trait (VT:0010471)	difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)	9	49968546	71098346	Rat
10058949	Gmadr5	Adrenal mass QTL 5	2	0.014	adrenal gland mass (VT:0010420)	both adrenal glands wet weight to body weight ratio (CMO:0002411)	9	42791513	87976209	Rat
631656	Bp108	Blood pressure QTL 108	5.97	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	48598251	93598251	Rat
2303170	Bp332	Blood pressure QTL 332	3.73	0.027	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	9	55847841	77026453	Rat
8662828	Vetf6	Vascular elastic tissue fragility QTL 6	3.9		artery integrity trait (VT:0010639)	patent ductus arteriosus score (CMO:0002566)	9	36962359	92058970	Rat
61352	Bp34	Blood pressure QTL 34	5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	42495343	79271511	Rat
724515	Uae16	Urinary albumin excretion QTL 16	8		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	58163035	100929646	Rat
1598834	Memor11	Memory QTL 11	2.5		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	9	36962359	77814038	Rat
70186	Niddm26	Non-insulin dependent diabetes mellitus QTL 26	3.87		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	9	22071169	86369743	Rat
7207814	Bmd91	Bone mineral density QTL 91	3.5		femur size trait (VT:1000369)	femoral neck cross-sectional area (CMO:0001697)	9	23754144	83851531	Rat
6903941	Pur31	Proteinuria QTL 31		0.036	urine total protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	9	40194188	85194188	Rat
2303180	Bp333	Blood pressure QTL 333		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	56627713	78595166	Rat
2290450	Scl57	Serum cholesterol level QTL 57	4.15		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	9	36962359	95410867	Rat
11353949	Bp393	Blood pressure QTL 393			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	40194188	85194188	Rat
11353951	Bp394	Blood pressure QTL 394			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	44649921	89649921	Rat
10054125	Srcrt7	Stress Responsive Cort QTL 7	3.33	0.0011	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	9	1	87073594	Rat
1300134	Bp185	Blood pressure QTL 185	3.73		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	9	61381434	104821652	Rat
1331757	Cdexp1	CD45RC expression in CD8 T cells QTL 1	4.3		CD8-positive T cell quantity (VT:0008077)	blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)	9	1024537	67509080	Rat
7411656	Foco26	Food consumption QTL 26	9.8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	9	32535505	77535505	Rat
1578659	Tspe1	Trichinella spiralis expulsion QTL 1	4.8		parasite quantity (VT:0010441)	logarithm of the intestinal adult Trichinella spiralis count (CMO:0002024)	9	61381434	65691299	Rat
1641894	Alcrsp12	Alcohol response QTL 12			response to alcohol trait (VT:0010489)	brain neurotensin receptor 1 density (CMO:0002068)	9	27468639	72468639	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_199401	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017596467	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017596468	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083641	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC061716	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473965	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000023796 ⟹ ENSRNOP00000023796

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	61,755,790 - 61,805,123 (+)	Ensembl
Rnor_6.0 Ensembl	9	67,130,259 - 67,179,692 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000102866 ⟹ ENSRNOP00000089003

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	61,755,854 - 61,805,111 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000106777 ⟹ ENSRNOP00000083475

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	61,755,886 - 61,805,123 (+)	Ensembl

RefSeq Acc Id:

NM_199401 ⟹ NP_955433

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	69,249,873 - 69,299,146 (+)	NCBI
mRatBN7.2	9	61,755,837 - 61,805,123 (+)	NCBI
Rnor_6.0	9	67,130,259 - 67,179,693 (+)	NCBI
Rnor_5.0	9	66,943,519 - 66,993,518 (+)	NCBI
RGSC_v3.4	9	58,907,503 - 58,973,287 (+)	RGD
Celera	9	59,185,997 - 59,234,590 (+)	RGD

Sequence:

show sequence

CCACCGCGGAGGGCAAAGCCGGCGACCGCGCGGACGGGCGGGAGGAAGCATGCTGGACTTCGCC
ATCTTCGCCGTGACGTTCCTGCTGGCGCTGGTGGGAGCGGTGCTGTACCTCTACCCGGCTTCCC
GACAAGCTTCAGGAATTCCAGGGCTTACTCCAACTGAAGAAAAAGATGGTAATCTTCCAGACAT
TGTGAACAGTGGGAGTTTGCATGAGTTCCTGGTTAATTTGCATGGAAGATACGGGCCTGTGGTC
TCTTTCTGGTTTGGCAGGCGTCTTGTGGTCAGCTTAGGCACCGCTGATGCACTGAAACAGCATT
TCAACCCCAATAAGACTTTGGACCCATTTGAAACCATGTTGAAGTCACTATTAGGCTATCGGTC
TGGTGCTGGGAGTGGGAGCGAGGACCACGTGAGGAGGAGACTGTACGGAGATGCTGTGACGGCT
GCTTTGCAGAGTAACTTTCCTCTCCTGCTGAAGCTCTCAGAAGAATTATTAGACAAATGGCTGT
CCTACCCAGAGACCCAGCACATACCTCTGAGCCAGCATATGCTTGGTTTTGCTTTGAAGTTTGT
CACACGGATGGTACTGGGTGACACATTTGAAGGTGAACAGGAAGTCATCCGATTCCAAAAGATT
CACGGCACAGTGTGGTCTGAGATTGGAAAAGGCTTTCTAGATGGGTCACTTGATAAAAACACCA
CTCGGAAAAACCAGTATCAAGAGGCTCTCATGCAATTGGAAGCTATTTTAAAGAAAATCATAAA
GGAACGAAAAGGAGGGGACTTCAGTCAACATACCTTCATTGACTCCTTAGTACAGAGAAACCTT
AATGAGCAGCAGATCCTAGAGGACAGTGTGGTGTTCTCTCTGGCCGGCTGCATAGTAACCGCAA
GGTTGTGTACCTGGGCCATTCACTTCCTAACAACAGCTGAAGAAGTTCAGAAGAAGCTACACAA
GGAGGTAGACCACGTTTTGGGGAAGGGTCCTATTACTTCAGAGAAAATCGAGCAGCTCAGATAT
TGCCAGCAAGTACTTTGTGAAACCGTTCGGACTGCCAAACTAACTCCAGTTTCTGCCCAGCTTC
AAGATATCGAAGGAAAAGTGGGTCCATTCATTATTCCTAAGGAGACGCTCGTCCTTTATGCCCT
CGGAGTGGTTCTTCAGGACGCCAGCACTTGGCCATCACCACACAAGTTTGATCCAGACCGCTTT
GCTGACGAGCCGGTGATGAAAGTGTTTTCTTCTCTTGGCTTCTCAGGCACATGGGAATGTCCAG
AACTGAGGTTTGCTTACGTGGTGACCACAGTGCTTGTGAGTGTGTTGCTGAAGAAGCTACATCT
GCTTGCTGTAGACAGACAAGTTTTTGAAATGAAGTATGAACTGGTCACGTCCTGCAGGGAGGAA
ACTTGGATCACTGTCTCCGAAAGACACTAGACGTTTATGCACTTAAAGTCTGTTAAGAATATGA
AGGGAAATGCCCAGTTAGAATGTGCTGAGTTCCTTTATAAACCCAGTATCCTTTTGTGATATAA
ATTTGGATTTTTATATGTCAAAATTTCTTAATGTATGATATATGTTTATACTTATATTGACAAC
TTTAATAGGAAAGTTTGATTTTCTTTTAATTTGCATCATCATCTAAGCCATTTTTTAATTTTTA
TTATTATTGGGGGGCAATGGCTTTTGAGACGGGGTTTCTCTGTATAGCCCTGGCTACTCTGGAA
CTCACTCTTTAGACCAAGCTGGCCTCAAACTCACAGAGAGCCACCTGCCCCTGCCTCCAGAGTG
CTGGGATCAAAGTCATGTGCCACCACCTCCTGGCTAAGCCATTTTTTAAACTTGATGTTCTTAG
TTTGATCTCGCAGATGAGTAATCTTAGAGAAGTCTTTTGTGCAAGCTGGAGAATCACGTTTTCT
GGATATTCATAAAAGAGAAACACAATGTTGCTTTTCGCATTTCTAATAAATCACCTATCATTCT
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_017596467 ⟹ XP_017451956

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	69,249,841 - 69,299,146 (+)	NCBI
mRatBN7.2	9	61,755,804 - 61,805,123 (+)	NCBI
Rnor_6.0	9	67,130,223 - 67,179,693 (+)	NCBI

Sequence:

show sequence

ATATCCGGATGCCACCTCCTTCTCCAGCCGCGGGCGCCACCGCGGAGGGCAAAGCCGGCGACCG
CGCGGACGGGCGGGAGGAAGCATGCTGGACTTCGCCATCTTCGCCGTGACGTTCCTGCTGGCGC
TGGTGGGAGCGGTGCTGTACCTCTACCCGAGATGGTAATCTTCCAGACATTGTGAACAGTGGGA
GTTTGCATGAGTTCCTGGTTAATTTGCATGGAAGATACGGGCCTGTGGTCTCTTTCTGGTTTGG
CAGGCGTCTTGTGGTCAGCTTAGGCACCGCTGATGCACTGAAACAGCATTTCAACCCCAATAAG
ACTTTGGACCCATTTGAAACCATGTTGAAGTCACTATTAGGCTATCGGTCTGGTGCTGGGAGTG
GGAGCGAGGACCACGTGAGGAGGAGACTGTACGGAGATGCTGTGACGGCTGCTTTGCAGAGTAA
CTTTCCTCTCCTGCTGAAGCTCTCAGAAGAATTATTAGACAAATGGCTGTCCTACCCAGAGACC
CAGCACATACCTCTGAGCCAGCATATGCTTGGTTTTGCTTTGAAGTTTGTCACACGGATGGTAC
TGGGTGACACATTTGAAGGTGAACAGGAAGTCATCCGATTCCAAAAGATTCACGGCACAGTGTG
GTCTGAGATTGGAAAAGGCTTTCTAGATGGGTCACTTGATAAAAACACCACTCGGAAAAACCAG
TATCAAGAGGCTCTCATGCAATTGGAAGCTATTTTAAAGAAAATCATAAAGGAACGAAAAGGAG
GGGACTTCAGTCAACATACCTTCATTGACTCCTTAGTACAGAGAAACCTTAATGAGCAGCAGAT
CCTAGAGGACAGTGTGGTGTTCTCTCTGGCCGGCTGCATAGTAACCGCAAGGTTGTGTACCTGG
GCCATTCACTTCCTAACAACAGCTGAAGAAGTTCAGAAGAAGCTACACAAGGAGGTAGACCACG
TTTTGGGGAAGGGTCCTATTACTTCAGAGAAAATCGAGCAGCTCAGATATTGCCAGCAAGTACT
TTGTGAAACCGTTCGGACTGCCAAACTAACTCCAGTTTCTGCCCAGCTTCAAGATATCGAAGGA
AAAGTGGGTCCATTCATTATTCCTAAGGAGACGCTCGTCCTTTATGCCCTCGGAGTGGTTCTTC
AGGACGCCAGCACTTGGCCATCACCACACAAGTTTGATCCAGACCGCTTTGCTGACGAGCCAGT
GATGAAAGTGTTTTCTTCTCTTGGCTTCTCAGGCACATGGGAATGTCCAGAACTGAGGTTTGCT
TACGTGGTGACCACAGTGCTTGTGAGTGTGTTGCTGAAGAAGCTACATCTGCTTGCTGTAGACA
GACAAGTTTTTGAAATGAAGTATGAACTGGTCACGTCCTGCAGGGAGGAAGCTTGGATCACTGT
CTCCGAAAGACACTAGACGTTTATGCACTTAAAGTCTGTTAAGAATATGAAGGGAAATGCCCAG
TTAGAATGTGCTGAGTTCCTTTATAAACCCAGTATCCTTTTGTGATATAAATTTGGATTTTTAT
ATGTCAAAATTTCTTAATGTATGATATATGTTTATACTTATATTGACAACTTTAATAGGAAAGT
TTGATTTTCTTTTAATTTGCATCATCATCTAAGCCATTTTTTAATTTTTATTATTATTGGGGGG
CAATGGCTTTTGAGACGGGGTTTCTCTGTATAGCCCTGGCTACTCTGGAACTCACTCTTTAGAC
CAAGCTGGCCTCAAACTCACAGAGAGCCACCTGCCCCTGCCTCCAGAGTGCTGGGATCAAAGTC
ATGTGCCACCACCTCCTGGCTAAGCCATTTTTTAAACTTGATGTTCTTAGTTTGATCTCGCAGA
TGAGTAATCTTAGAGAAGTCTTTTGTGCAAGCTGGAGAATCACGTTTTCTGGATATTCATAAAA
GAGAAACACAACGTTGCTTTTCGCATTTCTAATAAATCACCTATCATTCTA

hide sequence

RefSeq Acc Id:

XM_017596468 ⟹ XP_017451957

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	69,249,841 - 69,299,146 (+)	NCBI
mRatBN7.2	9	61,755,809 - 61,805,123 (+)	NCBI
Rnor_6.0	9	67,130,222 - 67,179,693 (+)	NCBI

Sequence:

show sequence

GATATCCGGATGCCACCTCCTTCTCCAGCCGCGGGCGCCACCGCGGAGGGCAAAGCCGGCGACC
GCGCGGACGGGCGGGAGGAAGCATGCTGGACTTCGCCATCTTCGCCGTGACGTTCCTGCTGGCG
CTGGTGGGAGCGGTGCTGTACCTCTACCCGTGGACCCATTTGAAACCATGTTGAAGTCACTATT
AGGCTATCGGTCTGGTGCTGGGAGTGGGAGCGAGGACCACGTGAGGAGGAGACTGTACGGAGAT
GCTGTGACGGCTGCTTTGCAGAGTAACTTTCCTCTCCTGCTGAAGCTCTCAGAAGAATTATTAG
ACAAATGGCTGTCCTACCCAGAGACCCAGCACATACCTCTGAGCCAGCATATGCTTGGTTTTGC
TTTGAAGTTTGTCACACGGATGGTACTGGGTGACACATTTGAAGGTGAACAGGAAGTCATCCGA
TTCCAAAAGATTCACGGCACAGTGTGGTCTGAGATTGGAAAAGGCTTTCTAGATGGGTCACTTG
ATAAAAACACCACTCGGAAAAACCAGTATCAAGAGGCTCTCATGCAATTGGAAGCTATTTTAAA
GAAAATCATAAAGGAACGAAAAGGAGGGGACTTCAGTCAACATACCTTCATTGACTCCTTAGTA
CAGAGAAACCTTAATGAGCAGCAGATCCTAGAGGACAGTGTGGTGTTCTCTCTGGCCGGCTGCA
TAGTAACCGCAAGGTTGTGTACCTGGGCCATTCACTTCCTAACAACAGCTGAAGAAGTTCAGAA
GAAGCTACACAAGGAGGTAGACCACGTTTTGGGGAAGGGTCCTATTACTTCAGAGAAAATCGAG
CAGCTCAGATATTGCCAGCAAGTACTTTGTGAAACCGTTCGGACTGCCAAACTAACTCCAGTTT
CTGCCCAGCTTCAAGATATCGAAGGAAAAGTGGGTCCATTCATTATTCCTAAGGAGACGCTCGT
CCTTTATGCCCTCGGAGTGGTTCTTCAGGACGCCAGCACTTGGCCATCACCACACAAGTTTGAT
CCAGACCGCTTTGCTGACGAGCCAGTGATGAAAGTGTTTTCTTCTCTTGGCTTCTCAGGCACAT
GGGAATGTCCAGAACTGAGGTTTGCTTACGTGGTGACCACAGTGCTTGTGAGTGTGTTGCTGAA
GAAGCTACATCTGCTTGCTGTAGACAGACAAGTTTTTGAAATGAAGTATGAACTGGTCACGTCC
TGCAGGGAGGAAGCTTGGATCACTGTCTCCGAAAGACACTAGACGTTTATGCACTTAAAGTCTG
TTAAGAATATGAAGGGAAATGCCCAGTTAGAATGTGCTGAGTTCCTTTATAAACCCAGTATCCT
TTTGTGATATAAATTTGGATTTTTATATGTCAAAATTTCTTAATGTATGATATATGTTTATACT
TATATTGACAACTTTAATAGGAAAGTTTGATTTTCTTTTAATTTGCATCATCATCTAAGCCATT
TTTTAATTTTTATTATTATTGGGGGGCAATGGCTTTTGAGACGGGGTTTCTCTGTATAGCCCTG
GCTACTCTGGAACTCACTCTTTAGACCAAGCTGGCCTCAAACTCACAGAGAGCCACCTGCCCCT
GCCTCCAGAGTGCTGGGATCAAAGTCATGTGCCACCACCTCCTGGCTAAGCCATTTTTTAAACT
TGATGTTCTTAGTTTGATCTCGCAGATGAGTAATCTTAGAGAAGTCTTTTGTGCAAGCTGGAGA
ATCACGTTTTCTGGATATTCATAAAAGAGAAACACAACGTTGCTTTTCGCATTTCTAATAAATC
ACCTATCATTCTA

hide sequence

RefSeq Acc Id:

XM_039083641 ⟹ XP_038939569

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	69,269,782 - 69,299,146 (+)	NCBI
mRatBN7.2	9	61,777,229 - 61,805,123 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_955433	(Get FASTA)	NCBI Sequence Viewer
	XP_017451956	(Get FASTA)	NCBI Sequence Viewer
	XP_017451957	(Get FASTA)	NCBI Sequence Viewer
	XP_038939569	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH61716	(Get FASTA)	NCBI Sequence Viewer
	EDL98935	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000023796.4
	ENSRNOP00000083475.1
	ENSRNOP00000089003.1
GenBank Protein	Q6P7D4	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_955433 ⟸ NM_199401

- UniProtKB:

Q6P7D4 (UniProtKB/Swiss-Prot), F1LSK6 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MLDFAIFAVTFLLALVGAVLYLYPASRQASGIPGLTPTEEKDGNLPDIVNSGSLHEFLVNLHGR
YGPVVSFWFGRRLVVSLGTADALKQHFNPNKTLDPFETMLKSLLGYRSGAGSGSEDHVRRRLYG
DAVTAALQSNFPLLLKLSEELLDKWLSYPETQHIPLSQHMLGFALKFVTRMVLGDTFEGEQEVI
RFQKIHGTVWSEIGKGFLDGSLDKNTTRKNQYQEALMQLEAILKKIIKERKGGDFSQHTFIDSL
VQRNLNEQQILEDSVVFSLAGCIVTARLCTWAIHFLTTAEEVQKKLHKEVDHVLGKGPITSEKI
EQLRYCQQVLCETVRTAKLTPVSAQLQDIEGKVGPFIIPKETLVLYALGVVLQDASTWPSPHKF
DPDRFADEPVMKVFSSLGFSGTWECPELRFAYVVTTVLVSVLLKKLHLLAVDRQVFEMKYELVT
SCREETWITVSERH

hide sequence

RefSeq Acc Id:

XP_017451957 ⟸ XM_017596468

- Peptide Label:

isoform X1

- Sequence:

show sequence

MLKSLLGYRSGAGSGSEDHVRRRLYGDAVTAALQSNFPLLLKLSEELLDKWLSYPETQHIPLSQ
HMLGFALKFVTRMVLGDTFEGEQEVIRFQKIHGTVWSEIGKGFLDGSLDKNTTRKNQYQEALMQ
LEAILKKIIKERKGGDFSQHTFIDSLVQRNLNEQQILEDSVVFSLAGCIVTARLCTWAIHFLTT
AEEVQKKLHKEVDHVLGKGPITSEKIEQLRYCQQVLCETVRTAKLTPVSAQLQDIEGKVGPFII
PKETLVLYALGVVLQDASTWPSPHKFDPDRFADEPVMKVFSSLGFSGTWECPELRFAYVVTTVL
VSVLLKKLHLLAVDRQVFEMKYELVTSCREEAWITVSERH

hide sequence

RefSeq Acc Id:

XP_017451956 ⟸ XM_017596467

- Peptide Label:

isoform X1

- Sequence:

show sequence

MLKSLLGYRSGAGSGSEDHVRRRLYGDAVTAALQSNFPLLLKLSEELLDKWLSYPETQHIPLSQ
HMLGFALKFVTRMVLGDTFEGEQEVIRFQKIHGTVWSEIGKGFLDGSLDKNTTRKNQYQEALMQ
LEAILKKIIKERKGGDFSQHTFIDSLVQRNLNEQQILEDSVVFSLAGCIVTARLCTWAIHFLTT
AEEVQKKLHKEVDHVLGKGPITSEKIEQLRYCQQVLCETVRTAKLTPVSAQLQDIEGKVGPFII
PKETLVLYALGVVLQDASTWPSPHKFDPDRFADEPVMKVFSSLGFSGTWECPELRFAYVVTTVL
VSVLLKKLHLLAVDRQVFEMKYELVTSCREEAWITVSERH

hide sequence

Ensembl Acc Id:

ENSRNOP00000023796 ⟸ ENSRNOT00000023796

RefSeq Acc Id:	XP_038939569 ⟸ XM_039083641
- Peptide Label:	isoform X2

Ensembl Acc Id:

ENSRNOP00000089003 ⟸ ENSRNOT00000102866

Ensembl Acc Id:

ENSRNOP00000083475 ⟸ ENSRNOT00000106777

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q6P7D4-F1-model_v2	AlphaFold	Q6P7D4	1-462	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13696706

Promoter ID:

EPDNEW_R7231

Type:

initiation region

Name:

Cyp20a1_1

Description:

cytochrome P450, family 20, subfamily a, polypeptide 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	9	67,130,241 - 67,130,301	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:735221	AgrOrtholog
BioCyc Gene	G2FUF-27381	BioCyc
Ensembl Genes	ENSRNOG00000017631	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000023796.5	UniProtKB/TrEMBL
	ENSRNOT00000102866.1	UniProtKB/TrEMBL
	ENSRNOT00000106777.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.630.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:5598443	IMAGE-MGC_LOAD
InterPro	CYP450_20A1-like	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Cyt_P450	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Cyt_P450_E_grp-I	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Cyt_P450_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:316435	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:72579	IMAGE-MGC_LOAD
NCBI Gene	316435	ENTREZGENE
PANTHER	CYTOCHROME P450 20A1	UniProtKB/Swiss-Prot
	CYTOCHROME P450 20A1	UniProtKB/Swiss-Prot
	CYTOCHROME P450 20A1	UniProtKB/TrEMBL
	CYTOCHROME P450 20A1	UniProtKB/TrEMBL
Pfam	p450	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Cyp20a1	PhenoGen
PRINTS	EP450I	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000017631	RatGTEx
Superfamily-SCOP	SSF48264	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A8I5ZX09_RAT	UniProtKB/TrEMBL
	A0A8I6A981_RAT	UniProtKB/TrEMBL
	A6IPC5_RAT	UniProtKB/TrEMBL
	CP20A_RAT	UniProtKB/Swiss-Prot
	F1LSK6	ENTREZGENE, UniProtKB/TrEMBL
	Q6P7D4	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2010-04-19	Cyp20a1	cytochrome P450, family 20, subfamily a, polypeptide 1	Cyp20a1	cytochrome P450, family 20, subfamily A, polypeptide 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2004-09-10	Cyp20a1	cytochrome P450, family 20, subfamily A, polypeptide 1			Symbol and Name status set to approved	1299863	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message

Imported Disease Annotations - ClinVar