Bp356 QTL Report (Rattus norvegicus) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
QTL Registration

QTL: Bp356 (Blood pressure QTL 356) Rattus norvegicus

Symbol: Bp356
Name: Blood pressure QTL 356
RGD ID: 6903937
Trait: arterial blood pressure trait   (VT:2000000)    
Measurement Type: systolic blood pressure   (CMO:0000004)    
LOD Score: Not Available
P Value: 0.001
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2947,902,208 - 52,283,252RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0952,686,874 - 57,216,771RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0952,352,690 - 97,352,690RGDRnor5.0
RGSC_v3.4944,842,118 - 89,842,118RGDRGSC3.4
Cross Type: Not Available
Strains Crossed: SS.SHR-(D9Mco72-D9Mco105)/Mco 



Disease Annotations     Click to see Annotation Detail View
Hypotension  (IAGP)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain

References

References - curated
# Reference Title Reference Citation
1. Refined mapping of blood pressure quantitative trait loci using congenic strains developed from two genetically hypertensive rat models. Kumarasamy S, etal., Hypertens Res. 2011 Dec;34(12):1263-70. doi: 10.1038/hr.2011.116. Epub 2011 Aug 4.
Related QTLs

Related QTL Description Reference
Bp333 sub_region RGD:6903249


Region

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
Position Markers

Flank 1: (D9Mco72)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2947,902,208 - 47,902,417 (+)MAPPER
Rnor_6.0952,686,874 - 52,687,080NCBI
Rnor_5.0952,352,690 - 52,352,896UniSTS
RGSC_v3.4944,842,118 - 44,842,324UniSTS
Celera945,571,224 - 45,571,428UniSTS
Cytogenetic Map9 RGD
Flank 2: (D9Mco105)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2952,283,039 - 52,283,252 (+)MAPPER
Rnor_6.0957,216,559 - 57,216,771NCBI
Cytogenetic Map9 RGD


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_general this region spans 2.05 Mb 6903249
qtl_general measurement method: animals were on 0.3% NaCl diet, at 40-42 of age they were on 2% NaCl diet; systolic blood pressure was measured by tail-cuff method on days 25-28 of high salt regimen; 4 days after this telemetric probes were implanted and blood pressure measured after recovery 6903249
qtl_general this region does not effect urine protein excretion 6903249