Rpe (ribulose-5-phosphate-3-epimerase) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Rpe (ribulose-5-phosphate-3-epimerase) Rattus norvegicus
Analyze
Symbol: Rpe
Name: ribulose-5-phosphate-3-epimerase
RGD ID: 1564890
Description: Enables D-ribulose-phosphate 3-epimerase activity and monosaccharide binding activity. Involved in pentose-phosphate shunt, non-oxidative branch. Predicted to be active in cytosol. Orthologous to several human genes including RPE (ribulose-5-phosphate-3-epimerase); PARTICIPATES IN pentose phosphate pathway; ribose 5-phosphate isomerase deficiency pathway; transaldolase deficiency pathway; INTERACTS WITH 2,3,7,8-Tetrachlorodibenzofuran; bisphenol A; buspirone.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: MGC124653; ribulose-phosphate 3-epimerase; similar to Ribulose-5-phosphate-3-epimerase
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8975,640,867 - 75,661,009 (+)NCBIGRCr8
mRatBN7.2968,191,027 - 68,211,295 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl968,191,292 - 68,211,591 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx976,683,016 - 76,701,336 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0981,811,955 - 81,830,275 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0980,206,660 - 80,228,639 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0973,687,684 - 73,713,643 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl973,687,743 - 73,711,571 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0973,592,974 - 73,615,163 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4965,470,071 - 65,490,200 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera965,672,114 - 65,690,468 (+)NCBICelera
Cytogenetic Map9q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytosol  (IBA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. The pentose phosphate pathway in the endoplasmic reticulum. Bublitz C and Steavenson S, J Biol Chem. 1988 Sep 15;263(26):12849-53.
2. The interdependence of glycolytic and pentose cycle intermediates in ad libitum fed rats. Casazza JP and Veech RL, J Biol Chem. 1986 Jan 15;261(2):690-8.
3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
6. GOA pipeline RGD automated data pipeline
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
9. A humble hexose monophosphate pathway metabolite regulates short- and long-term control of lipogenesis. Veech RL Proc Natl Acad Sci U S A. 2003 May 13;100(10):5578-80. Epub 2003 Apr 29.
Additional References at PubMed
PMID:7396409   PMID:16189514   PMID:20923965   PMID:23533145   PMID:25416956  


Genomics

Comparative Map Data
Rpe
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8975,640,867 - 75,661,009 (+)NCBIGRCr8
mRatBN7.2968,191,027 - 68,211,295 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl968,191,292 - 68,211,591 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx976,683,016 - 76,701,336 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0981,811,955 - 81,830,275 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0980,206,660 - 80,228,639 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0973,687,684 - 73,713,643 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl973,687,743 - 73,711,571 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0973,592,974 - 73,615,163 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4965,470,071 - 65,490,200 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera965,672,114 - 65,690,468 (+)NCBICelera
Cytogenetic Map9q32NCBI
RPE
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382210,002,638 - 210,022,260 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2210,002,565 - 210,022,260 (+)EnsemblGRCh38hg38GRCh38
GRCh372210,867,362 - 210,886,984 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362210,575,597 - 210,594,536 (+)NCBINCBI36Build 36hg18NCBI36
Build 342210,692,886 - 210,711,796NCBI
Celera2204,635,382 - 204,654,317 (+)NCBICelera
Cytogenetic Map2q34NCBI
HuRef2202,712,085 - 202,732,295 (+)NCBIHuRef
CHM1_12210,873,478 - 210,893,159 (+)NCBICHM1_1
T2T-CHM13v2.02210,483,346 - 210,502,965 (+)NCBIT2T-CHM13v2.0
Rpe
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39166,739,957 - 66,758,964 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl166,739,990 - 66,758,964 (+)EnsemblGRCm39 Ensembl
GRCm38166,700,797 - 66,719,805 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl166,700,831 - 66,719,805 (+)EnsemblGRCm38mm10GRCm38
MGSCv37166,747,467 - 66,766,379 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36166,634,101 - 66,653,013 (+)NCBIMGSCv36mm8
Celera167,215,120 - 67,233,622 (+)NCBICelera
Cytogenetic Map1C3NCBI
cM Map133.61NCBI
Rpe
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554575,425,532 - 5,441,538 (-)NCBIChiLan1.0ChiLan1.0
RPE
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213112,625,893 - 112,645,620 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B112,640,872 - 112,661,872 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B97,260,348 - 97,282,397 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B215,663,592 - 215,685,654 (+)NCBIpanpan1.1PanPan1.1panPan2
RPE
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13717,866,729 - 17,882,702 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3718,747,197 - 18,762,940 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03717,804,510 - 17,820,257 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3717,804,539 - 17,827,714 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13717,757,437 - 17,773,149 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03717,719,697 - 17,735,453 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03717,734,148 - 17,753,357 (+)NCBIUU_Cfam_GSD_1.0
Rpe
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303166,331,725 - 166,407,427 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936845188,414 - 264,070 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPE
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.115112,723,318 - 112,748,337 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215124,443,417 - 124,460,265 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RPE
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11095,702,525 - 95,721,807 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666040103,634,078 - 103,652,793 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rpe
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247656,205,972 - 6,222,636 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247656,188,964 - 6,222,580 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rpe
160 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:193
Count of miRNA genes:133
Interacting mature miRNAs:167
Transcripts:ENSRNOT00000017197
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10054125Srcrt7Stress Responsive Cort QTL 73.330.0011blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)9187073594Rat
70186Niddm26Non-insulin dependent diabetes mellitus QTL 263.87blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)92207116986369743Rat
7207814Bmd91Bone mineral density QTL 913.5femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)92375414483851531Rat
70218Cm28Cardiac mass QTL 288.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)92526804479271759Rat
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)925268044114175309Rat
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)925661188100929786Rat
1641894Alcrsp12Alcohol response QTL 12response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)92746863972468639Rat
7411656Foco26Food consumption QTL 269.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)93253550577535505Rat
7411571Bw138Body weight QTL 13814.30.001body mass (VT:0001259)body weight gain (CMO:0000420)93253550577535505Rat
1598834Memor11Memory QTL 112.5exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)93696235977814038Rat
8662828Vetf6Vascular elastic tissue fragility QTL 63.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)93696235992058970Rat
2290450Scl57Serum cholesterol level QTL 574.15blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)93696235995410867Rat
6903941Pur31Proteinuria QTL 310.036urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)94019418885194188Rat
11353949Bp393Blood pressure QTL 393arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94019418885194188Rat
61352Bp34Blood pressure QTL 345arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94249534379271511Rat
10058949Gmadr5Adrenal mass QTL 520.014adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)94279151387976209Rat
11353951Bp394Blood pressure QTL 394arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94464992189649921Rat
12879506Pur33Proteinuria QTL 33urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)94464992189649921Rat
11353957Bmd92Bone mineral density QTL 920.01tibia mineral mass (VT:1000283)volumetric bone mineral density (CMO:0001553)94611419991114199Rat
631656Bp108Blood pressure QTL 1085.970.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94859825193598251Rat
1598849Memor17Memory QTL 172.2exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)94996854671098346Rat
2303170Bp332Blood pressure QTL 3323.730.027arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)95584784177026453Rat
2303180Bp333Blood pressure QTL 3330.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)95662771378595166Rat
2303180Bp333Blood pressure QTL 3330.001arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)95662771378595166Rat
2303180Bp333Blood pressure QTL 3330.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)95662771378595166Rat
1578760Cm53Cardiac mass QTL 533.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)956771635101771635Rat
724515Uae16Urinary albumin excretion QTL 168urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)958163035100929646Rat
1300134Bp185Blood pressure QTL 1853.73arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)961381434104821652Rat
1581580Uae34Urinary albumin excretion QTL 34urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)96207227596470995Rat
1578757Pur6Proteinuria QTL 63.30.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)96207227596470995Rat
61385Edpm9Estrogen-dependent pituitary mass QTL 93.430.05pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)963869687108869687Rat
731171Glom6Glomerulus QTL 62.80.0003kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)964573531109573531Rat

Markers in Region
BF398855  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2968,208,563 - 68,208,726 (+)MAPPERmRatBN7.2
Rnor_6.0973,708,834 - 73,708,996NCBIRnor6.0
Rnor_5.0973,597,621 - 73,597,783UniSTSRnor5.0
RGSC_v3.4965,487,469 - 65,487,631UniSTSRGSC3.4
Celera965,687,737 - 65,687,899UniSTS
RH 3.4 Map9612.0UniSTS
Cytogenetic Map9q32UniSTS
RH140448  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2968,210,879 - 68,211,078 (+)MAPPERmRatBN7.2
Rnor_6.0973,711,150 - 73,711,348NCBIRnor6.0
Rnor_5.0973,595,269 - 73,595,467UniSTSRnor5.0
RGSC_v3.4965,489,785 - 65,489,983UniSTSRGSC3.4
Celera965,690,053 - 65,690,251UniSTS
RH 3.4 Map9615.29UniSTS
Cytogenetic Map9q32UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 32 57 41 19 41 8 9 74 35 37 11 8
Low 11 2 4
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001033903 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001399122 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001399123 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001399124 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001399125 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001399127 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245105 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245107 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008767287 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008767288 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008767289 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084097 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267618 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267619 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267620 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC101869 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474044 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225343 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231516 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000017197   ⟹   ENSRNOP00000017197
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl968,191,343 - 68,211,291 (+)Ensembl
Rnor_6.0 Ensembl973,687,786 - 73,711,571 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000079495   ⟹   ENSRNOP00000069730
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl968,191,329 - 68,211,591 (+)Ensembl
Rnor_6.0 Ensembl973,687,743 - 73,710,726 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000079912
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl973,707,005 - 73,708,063 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000116351   ⟹   ENSRNOP00000086710
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl968,191,292 - 68,211,291 (+)Ensembl
RefSeq Acc Id: NM_001033903   ⟹   NP_001029075
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8975,641,041 - 75,661,009 (+)NCBI
mRatBN7.2968,191,327 - 68,211,295 (+)NCBI
Rnor_6.0973,687,786 - 73,711,565 (+)NCBI
Rnor_5.0973,592,974 - 73,615,163 (-)NCBI
RGSC_v3.4965,470,071 - 65,490,200 (+)RGD
Celera965,672,114 - 65,690,468 (+)RGD
Sequence:
RefSeq Acc Id: NM_001399122   ⟹   NP_001386051
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8975,641,041 - 75,661,009 (+)NCBI
mRatBN7.2968,191,327 - 68,211,295 (+)NCBI
RefSeq Acc Id: NM_001399123   ⟹   NP_001386052
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8975,641,041 - 75,661,009 (+)NCBI
mRatBN7.2968,191,327 - 68,211,295 (+)NCBI
RefSeq Acc Id: NM_001399124   ⟹   NP_001386053
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8975,641,041 - 75,661,009 (+)NCBI
mRatBN7.2968,191,327 - 68,211,295 (+)NCBI
RefSeq Acc Id: NM_001399125   ⟹   NP_001386054
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8975,641,041 - 75,661,009 (+)NCBI
mRatBN7.2968,191,327 - 68,211,295 (+)NCBI
RefSeq Acc Id: NM_001399127   ⟹   NP_001386056
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8975,641,041 - 75,661,009 (+)NCBI
mRatBN7.2968,191,327 - 68,211,295 (+)NCBI
RefSeq Acc Id: XM_006245105   ⟹   XP_006245167
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8975,640,940 - 75,661,009 (+)NCBI
mRatBN7.2968,191,199 - 68,211,295 (+)NCBI
Rnor_6.0973,687,690 - 73,711,565 (+)NCBI
Rnor_5.0973,592,974 - 73,615,163 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006245107   ⟹   XP_006245169
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8975,640,961 - 75,661,009 (+)NCBI
mRatBN7.2968,191,241 - 68,211,295 (+)NCBI
Rnor_6.0973,687,693 - 73,711,565 (+)NCBI
Rnor_5.0973,592,974 - 73,615,163 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008767287   ⟹   XP_008765509
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8975,640,938 - 75,661,009 (+)NCBI
mRatBN7.2968,191,167 - 68,211,295 (+)NCBI
Rnor_6.0973,687,689 - 73,711,565 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008767288   ⟹   XP_008765510
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8975,640,867 - 75,661,009 (+)NCBI
mRatBN7.2968,191,027 - 68,211,295 (+)NCBI
Rnor_6.0973,687,684 - 73,711,565 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008767289   ⟹   XP_008765511
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8975,640,984 - 75,661,009 (+)NCBI
mRatBN7.2968,191,304 - 68,211,295 (+)NCBI
Rnor_6.0973,687,820 - 73,711,565 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039084097   ⟹   XP_038940025
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8975,641,122 - 75,661,009 (+)NCBI
mRatBN7.2968,191,304 - 68,211,295 (+)NCBI
RefSeq Acc Id: XM_063267618   ⟹   XP_063123688
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8975,640,945 - 75,661,009 (+)NCBI
RefSeq Acc Id: XM_063267619   ⟹   XP_063123689
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8975,640,948 - 75,661,009 (+)NCBI
RefSeq Acc Id: XM_063267620   ⟹   XP_063123690
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8975,641,024 - 75,661,009 (+)NCBI
RefSeq Acc Id: NP_001029075   ⟸   NM_001033903
- Peptide Label: isoform 4
- UniProtKB: Q3MIF0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006245167   ⟸   XM_006245105
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006245169   ⟸   XM_006245107
- Peptide Label: isoform X4
- UniProtKB: A0A0G2JW38 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008765510   ⟸   XM_008767288
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_008765509   ⟸   XM_008767287
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_008765511   ⟸   XM_008767289
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: ENSRNOP00000069730   ⟸   ENSRNOT00000079495
RefSeq Acc Id: ENSRNOP00000017197   ⟸   ENSRNOT00000017197
RefSeq Acc Id: XP_038940025   ⟸   XM_039084097
- Peptide Label: isoform X7
RefSeq Acc Id: ENSRNOP00000086710   ⟸   ENSRNOT00000116351
RefSeq Acc Id: NP_001386051   ⟸   NM_001399122
- Peptide Label: isoform 1
- UniProtKB: A0A8I6GEB4 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001386052   ⟸   NM_001399123
- Peptide Label: isoform 2
RefSeq Acc Id: NP_001386053   ⟸   NM_001399124
- Peptide Label: isoform 3
- UniProtKB: A6KFD1 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001386054   ⟸   NM_001399125
- Peptide Label: isoform 5
RefSeq Acc Id: NP_001386056   ⟸   NM_001399127
- Peptide Label: isoform 6
- UniProtKB: A6KFD3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063123688   ⟸   XM_063267618
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063123689   ⟸   XM_063267619
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063123690   ⟸   XM_063267620
- Peptide Label: isoform X8

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2JW38-F1-model_v2 AlphaFold A0A0G2JW38 1-228 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696730
Promoter ID:EPDNEW_R7248
Type:initiation region
Name:Rpe_1
Description:ribulose-5-phosphate-3-epimerase
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0973,687,770 - 73,687,830EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1564890 AgrOrtholog
BioCyc Gene G2FUF-27291 BioCyc
BioCyc Pathway NONOXIPENT-PWY [pentose phosphate pathway (non-oxidative branch) I] BioCyc
BioCyc Pathway Image NONOXIPENT-PWY BioCyc
Ensembl Genes ENSRNOG00000038085 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000017197 ENTREZGENE
  ENSRNOT00000017197.8 UniProtKB/TrEMBL
  ENSRNOT00000079495.2 UniProtKB/TrEMBL
  ENSRNOT00000116351 ENTREZGENE
  ENSRNOT00000116351.1 UniProtKB/TrEMBL
Gene3D-CATH 3.20.20.70 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:5621971 IMAGE-MGC_LOAD
InterPro Aldolase_TIM UniProtKB/TrEMBL
  Ribul_P_3_epim UniProtKB/TrEMBL
  Ribul_P_3_epim UniProtKB/TrEMBL
  RibuloseP-bd_barrel UniProtKB/TrEMBL
KEGG Report rno:501157 UniProtKB/TrEMBL
MGC_CLONE MGC:124653 IMAGE-MGC_LOAD
NCBI Gene 501157 ENTREZGENE
PANTHER Ribul_P_3_epim UniProtKB/TrEMBL
  RIBULOSE-PHOSPHATE 3-EPIMERASE-RELATED UniProtKB/TrEMBL
Pfam Ribul_P_3_epim UniProtKB/TrEMBL
PhenoGen Rpe PhenoGen
PIRSF RPE UniProtKB/TrEMBL
PROSITE RIBUL_P_3_EPIMER_1 UniProtKB/TrEMBL
  RIBUL_P_3_EPIMER_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000038085 RatGTEx
Superfamily-SCOP RibP_bind_barrel UniProtKB/TrEMBL
UniProt A0A0G2JW38 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GEB4 ENTREZGENE, UniProtKB/TrEMBL
  A6KFD1 ENTREZGENE, UniProtKB/TrEMBL
  A6KFD3 ENTREZGENE, UniProtKB/TrEMBL
  Q3MIF0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-06 Rpe  ribulose-5-phosphate-3-epimerase  MGC124653  similar to Ribulose-5-phosphate-3-epimerase  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-02-09 MGC124653  similar to Ribulose-5-phosphate-3-epimerase      Symbol and Name status set to provisional 70820 PROVISIONAL