Spats2l (spermatogenesis associated, serine-rich 2-like) - Rat Genome Database

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Gene: Spats2l (spermatogenesis associated, serine-rich 2-like) Rattus norvegicus
Analyze
Symbol: Spats2l
Name: spermatogenesis associated, serine-rich 2-like
RGD ID: 1309930
Description: Predicted to be located in cytosol; nucleolus; and nucleoplasm. Predicted to be part of protein-containing complex. Predicted to be active in cytoplasm. Orthologous to human SPATS2L (spermatogenesis associated serine rich 2 like); INTERACTS WITH 1,2-dimethylhydrazine; 6-propyl-2-thiouracil; acetamide.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC316426; RGD1309930; similar to 2810022L02Rik protein; SPATS2-like protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2959,319,949 - 59,493,864 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl959,320,276 - 59,493,967 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx967,895,228 - 67,993,937 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0973,011,133 - 73,109,850 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0971,329,242 - 71,427,953 (+)NCBIRnor_WKY
Rnor_6.0964,643,223 - 64,843,963 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl964,643,281 - 64,843,960 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0964,442,918 - 64,641,803 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4956,584,578 - 56,607,773 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera956,841,343 - 56,939,933 (+)NCBICelera
Cytogenetic Map9q31NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IBA,IEA)
cytosol  (IEA,ISO)
nucleolus  (IEA,ISO)
nucleoplasm  (IEA,ISO)
protein-containing complex  (IEA,ISO)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:22658674   PMID:22681889   PMID:30361391  


Genomics

Comparative Map Data
Spats2l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2959,319,949 - 59,493,864 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl959,320,276 - 59,493,967 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx967,895,228 - 67,993,937 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0973,011,133 - 73,109,850 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0971,329,242 - 71,427,953 (+)NCBIRnor_WKY
Rnor_6.0964,643,223 - 64,843,963 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl964,643,281 - 64,843,960 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0964,442,918 - 64,641,803 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4956,584,578 - 56,607,773 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera956,841,343 - 56,939,933 (+)NCBICelera
Cytogenetic Map9q31NCBI
SPATS2L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382200,305,879 - 200,482,264 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl2200,305,881 - 200,482,264 (+)EnsemblGRCh38hg38GRCh38
GRCh372201,170,602 - 201,346,987 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362200,878,849 - 201,055,231 (+)NCBINCBI36Build 36hg18NCBI36
Celera2194,925,314 - 195,101,826 (+)NCBICelera
Cytogenetic Map2q33.1NCBI
HuRef2193,023,113 - 193,199,377 (+)NCBIHuRef
CHM1_12201,176,660 - 201,352,970 (+)NCBICHM1_1
T2T-CHM13v2.02200,789,476 - 200,965,756 (+)NCBIT2T-CHM13v2.0
Spats2l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39157,813,261 - 57,987,557 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl157,813,321 - 57,987,553 (+)EnsemblGRCm39 Ensembl
GRCm38157,774,102 - 57,948,398 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl157,774,162 - 57,948,394 (+)EnsemblGRCm38mm10GRCm38
MGSCv37157,831,705 - 58,005,241 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36157,719,474 - 57,892,940 (+)NCBIMGSCv36mm8
Celera158,288,869 - 58,462,213 (+)NCBICelera
Cytogenetic Map1C1.3NCBI
Spats2l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955403930,622 - 1,013,777 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955403930,622 - 1,085,906 (-)NCBIChiLan1.0ChiLan1.0
SPATS2L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12B205,717,033 - 205,889,626 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B205,800,294 - 205,889,626 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02B87,558,298 - 87,735,646 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
SPATS2L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1379,403,557 - 9,564,466 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl379,407,101 - 9,586,913 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3710,290,333 - 10,451,092 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0379,302,927 - 9,463,742 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl379,302,462 - 9,463,742 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1379,291,451 - 9,451,900 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0379,263,345 - 9,424,308 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0379,261,759 - 9,422,544 (+)NCBIUU_Cfam_GSD_1.0
Spats2l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303157,436,486 - 157,603,590 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936825423,984 - 591,495 (-)EnsemblSpeTri2.0
SpeTri2.0NW_004936825423,986 - 591,062 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SPATS2L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15103,879,356 - 104,060,524 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115103,879,416 - 104,060,525 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215115,151,331 - 115,332,519 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SPATS2L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11085,804,609 - 85,975,998 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1085,807,818 - 85,976,099 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040113,463,647 - 113,635,234 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Spats2l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624889596,024 - 716,310 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624889596,019 - 737,072 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Spats2l
892 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:192
Count of miRNA genes:116
Interacting mature miRNAs:133
Transcripts:ENSRNOT00000021527
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10054125Srcrt7Stress Responsive Cort QTL 73.330.0011blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)9187073594Rat
1331757Cdexp1CD45RC expression in CD8 T cells QTL 14.3CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)9102453767509080Rat
631680Cm11Cardiac mass QTL 113.10.00089heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)92043051965430519Rat
70186Niddm26Non-insulin dependent diabetes mellitus QTL 263.87blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)92207116986369743Rat
631643Bp120Blood pressure QTL 12030.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)92207120067071200Rat
1300180Bw14Body weight QTL 143.776body mass (VT:0001259)body weight (CMO:0000012)92375402461381613Rat
7207814Bmd91Bone mineral density QTL 913.5femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)92375414483851531Rat
70218Cm28Cardiac mass QTL 288.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)92526804479271759Rat
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)925268044114175309Rat
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)925661188100929786Rat
1641894Alcrsp12Alcohol response QTL 12response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)92746863972468639Rat
7411656Foco26Food consumption QTL 269.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)93253550577535505Rat
7411571Bw138Body weight QTL 13814.30.001body mass (VT:0001259)body weight gain (CMO:0000420)93253550577535505Rat
1598834Memor11Memory QTL 112.5exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)93696235977814038Rat
8662828Vetf6Vascular elastic tissue fragility QTL 63.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)93696235992058970Rat
2290450Scl57Serum cholesterol level QTL 574.15blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)93696235995410867Rat
6903941Pur31Proteinuria QTL 310.036urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)94019418885194188Rat
11353949Bp393Blood pressure QTL 393arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94019418885194188Rat
61352Bp34Blood pressure QTL 345arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94249534379271511Rat
10058949Gmadr5Adrenal mass QTL 520.014adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)94279151387976209Rat
11353951Bp394Blood pressure QTL 394arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94464992189649921Rat
12879506Pur33Proteinuria QTL 33urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)94464992189649921Rat
11353957Bmd92Bone mineral density QTL 920.01tibia mineral mass (VT:1000283)volumetric bone mineral density (CMO:0001553)94611419991114199Rat
631656Bp108Blood pressure QTL 1085.970.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94859825193598251Rat
1598849Memor17Memory QTL 172.2exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)94996854671098346Rat
2303170Bp332Blood pressure QTL 3323.730.027arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)95584784177026453Rat
2303180Bp333Blood pressure QTL 3330.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)95662771378595166Rat
2303180Bp333Blood pressure QTL 3330.001arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)95662771378595166Rat
2303180Bp333Blood pressure QTL 3330.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)95662771378595166Rat
1578760Cm53Cardiac mass QTL 533.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)956771635101771635Rat
724515Uae16Urinary albumin excretion QTL 168urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)958163035100929646Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 33 10 10 10 2 2 62 24 31 3 2
Low 1 10 47 31 19 31 6 9 12 11 8 8 6
Below cutoff 2

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001014102 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006244990 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006244991 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006244992 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006244993 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008767107 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008767108 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008767109 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008767110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596460 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083627 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083628 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083629 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083630 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083631 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083632 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC085874 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473965 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000214 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000021527   ⟹   ENSRNOP00000021527
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl959,320,276 - 59,493,967 (+)Ensembl
Rnor_6.0 Ensembl964,745,051 - 64,843,960 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000081497   ⟹   ENSRNOP00000069610
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl959,426,375 - 59,493,863 (+)Ensembl
Rnor_6.0 Ensembl964,643,281 - 64,843,928 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000100381   ⟹   ENSRNOP00000077000
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl959,320,276 - 59,493,967 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000103936   ⟹   ENSRNOP00000077858
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl959,320,276 - 59,493,863 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000104709   ⟹   ENSRNOP00000081101
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl959,322,674 - 59,493,861 (+)Ensembl
RefSeq Acc Id: NM_001014102   ⟹   NP_001014124
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2959,394,928 - 59,493,864 (+)NCBI
Rnor_6.0964,745,051 - 64,843,961 (+)NCBI
Rnor_5.0964,442,918 - 64,641,803 (+)NCBI
RGSC_v3.4956,584,578 - 56,607,773 (+)RGD
Celera956,841,343 - 56,939,933 (+)RGD
Sequence:
RefSeq Acc Id: XM_006244990   ⟹   XP_006245052
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2959,319,949 - 59,493,864 (+)NCBI
Rnor_6.0964,643,246 - 64,843,963 (+)NCBI
Rnor_5.0964,442,918 - 64,641,803 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006244991   ⟹   XP_006245053
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2959,319,949 - 59,493,864 (+)NCBI
Rnor_6.0964,643,246 - 64,843,963 (+)NCBI
Rnor_5.0964,442,918 - 64,641,803 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006244992   ⟹   XP_006245054
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2959,319,956 - 59,493,864 (+)NCBI
Rnor_6.0964,643,223 - 64,843,963 (+)NCBI
Rnor_5.0964,442,918 - 64,641,803 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006244993   ⟹   XP_006245055
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2959,319,949 - 59,493,864 (+)NCBI
Rnor_6.0964,643,247 - 64,843,963 (+)NCBI
Rnor_5.0964,442,918 - 64,641,803 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008767107   ⟹   XP_008765329
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2959,319,949 - 59,493,864 (+)NCBI
Rnor_6.0964,643,248 - 64,843,963 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008767110   ⟹   XP_008765332
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2959,378,978 - 59,493,864 (+)NCBI
Rnor_6.0964,729,543 - 64,843,963 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017596460   ⟹   XP_017451949
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2959,320,251 - 59,493,864 (+)NCBI
Rnor_6.0964,643,579 - 64,843,963 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039083627   ⟹   XP_038939555
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2959,320,727 - 59,493,864 (+)NCBI
RefSeq Acc Id: XM_039083628   ⟹   XP_038939556
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2959,320,537 - 59,493,864 (+)NCBI
RefSeq Acc Id: XM_039083629   ⟹   XP_038939557
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2959,345,453 - 59,493,864 (+)NCBI
RefSeq Acc Id: XM_039083630   ⟹   XP_038939558
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2959,320,727 - 59,493,834 (+)NCBI
RefSeq Acc Id: XM_039083631   ⟹   XP_038939559
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2959,320,251 - 59,493,834 (+)NCBI
RefSeq Acc Id: XM_039083632   ⟹   XP_038939560
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2959,320,537 - 59,493,864 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_001014124   ⟸   NM_001014102
- UniProtKB: Q5U2T3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006245054   ⟸   XM_006244992
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006245052   ⟸   XM_006244990
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006245053   ⟸   XM_006244991
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006245055   ⟸   XM_006244993
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_008765329   ⟸   XM_008767107
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_008765332   ⟸   XM_008767110
- Peptide Label: isoform X4
- UniProtKB: Q5U2T3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017451949   ⟸   XM_017596460
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: ENSRNOP00000021527   ⟸   ENSRNOT00000021527
RefSeq Acc Id: ENSRNOP00000069610   ⟸   ENSRNOT00000081497
RefSeq Acc Id: XP_038939559   ⟸   XM_039083631
- Peptide Label: isoform X7
- UniProtKB: A0A8I5ZRR1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038939556   ⟸   XM_039083628
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038939560   ⟸   XM_039083632
- Peptide Label: isoform X8
- UniProtKB: A0A8I5Y992 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038939555   ⟸   XM_039083627
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038939558   ⟸   XM_039083630
- Peptide Label: isoform X7
- UniProtKB: A0A8I5ZRR1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038939557   ⟸   XM_039083629
- Peptide Label: isoform X4
- UniProtKB: Q5U2T3 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: ENSRNOP00000081101   ⟸   ENSRNOT00000104709
RefSeq Acc Id: ENSRNOP00000077000   ⟸   ENSRNOT00000100381
RefSeq Acc Id: ENSRNOP00000077858   ⟸   ENSRNOT00000103936

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5U2T3-F1-model_v2 AlphaFold Q5U2T3 1-558 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696680
Promoter ID:EPDNEW_R7205
Type:single initiation site
Name:Spats2l_1
Description:spermatogenesis associated, serine-rich 2-like
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0964,745,240 - 64,745,300EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309930 AgrOrtholog
BioCyc Gene G2FUF-27475 BioCyc
Ensembl Genes ENSRNOG00000016012 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000021527 ENTREZGENE
  ENSRNOP00000021527.6 UniProtKB/TrEMBL
  ENSRNOP00000069610 ENTREZGENE
  ENSRNOP00000069610.2 UniProtKB/TrEMBL
  ENSRNOP00000077000 ENTREZGENE
  ENSRNOP00000077000.1 UniProtKB/TrEMBL
  ENSRNOP00000077858.1 UniProtKB/TrEMBL
  ENSRNOP00000081101 ENTREZGENE
  ENSRNOP00000081101.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000021527 ENTREZGENE
  ENSRNOT00000021527.7 UniProtKB/TrEMBL
  ENSRNOT00000081497 ENTREZGENE
  ENSRNOT00000081497.2 UniProtKB/TrEMBL
  ENSRNOT00000100381 ENTREZGENE
  ENSRNOT00000100381.1 UniProtKB/TrEMBL
  ENSRNOT00000103936.1 UniProtKB/TrEMBL
  ENSRNOT00000104709 ENTREZGENE
  ENSRNOT00000104709.1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7191441 IMAGE-MGC_LOAD
InterPro DUF1387 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UBA-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:316426 UniProtKB/Swiss-Prot
MGC_CLONE MGC:94640 IMAGE-MGC_LOAD
NCBI Gene 316426 ENTREZGENE
PANTHER PTHR15623 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam DUF1387 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Spats2l PhenoGen
Superfamily-SCOP SSF46934 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2JVT4_RAT UniProtKB/TrEMBL
  A0A8I5Y6T6_RAT UniProtKB/TrEMBL
  A0A8I5Y992 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZRR1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2QB71_RAT UniProtKB/TrEMBL
  Q5U2T3 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-05-24 Spats2l  spermatogenesis associated, serine-rich 2-like  LOC100360294  spermatogenesis associated, serine-rich 2-like  Data Merged 1643240 APPROVED
2010-05-06 LOC100360294  spermatogenesis associated, serine-rich 2-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2010-02-12 Spats2l  spermatogenesis associated, serine-rich 2-like  RGD1309930  similar to 2810022L02Rik protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 RGD1309930  similar to 2810022L02Rik protein  RGD1309930_predicted  similar to 2810022L02Rik protein (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1309930_predicted  similar to 2810022L02Rik protein (predicted)  LOC316426_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC316426_predicted  similar to 2810022L02Rik protein (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL