Slc1a2 (solute carrier family 1 member 2)

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Gene: Slc1a2 (solute carrier family 1 member 2) Rattus norvegicus

Analyze

Symbol:

Slc1a2

Name:

solute carrier family 1 member 2

RGD ID:

3697

Description:

Enables high-affinity L-glutamate transmembrane transporter activity. Involved in L-glutamate transmembrane transport. Located in several cellular components, including astrocyte projection; dendrite; and presynaptic membrane. Part of membrane protein complex. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 41. Orthologous to human SLC1A2 (solute carrier family 1 member 2); PARTICIPATES IN amyotrophic lateral sclerosis pathway; glutamate signaling pathway; INTERACTS WITH (+)-schisandrin B; (4-chloro-2-methylphenoxy)acetic acid; 17alpha-ethynylestradiol.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

Eaat2; excitatory amino acid transporter 2; glial glutamate transporter GLT1/V3; glial glutamate transporter GLT1/V4; Glt; GLT-1; GluT; GluT-R; glutamate transporter; glutamate transporter 1; high affinity glucose transporter; sodium-dependent glutamate/aspartate transporter 2; solute carrier family 1 (glial high affinity glutamate transporter), member 2; solute carrier family 1, member 2

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SLC1A2 (solute carrier family 1 member 2)	HGNC	HomoloGene, NCBI, Panther
Mus musculus (house mouse):	Slc1a2 (solute carrier family 1 (glial high affinity glutamate transporter), member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Slc1a2 (solute carrier family 1 member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SLC1A2 (solute carrier family 1 member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SLC1A2 (solute carrier family 1 member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Slc1a2 (solute carrier family 1 member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SLC1A2 (solute carrier family 1 member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SLC1A2 (solute carrier family 1 member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Slc1a2 (solute carrier family 1 member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	SLC1A2 (solute carrier family 1 member 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Slc1a2 (solute carrier family 1 (glial high affinity glutamate transporter), member 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	slc1a2b (solute carrier family 1 member 2b)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	slc1a2a (solute carrier family 1 member 2a)	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	glt-1	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Eaat2	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	glt-3	Alliance	DIOPT (Hieranoid\|OrthoFinder\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	glt-5	Alliance	DIOPT (Hieranoid\|OrthoFinder\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	glt-6	Alliance	DIOPT (Hieranoid\|OrthoFinder\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	glt-7	Alliance	DIOPT (OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

NCBI Annotation Information:

Annotation category: partial on reference assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	3	89,005,129 - 89,126,498 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	89,005,129 - 89,126,498 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	92,504,212 - 92,634,668 (+)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	3	101,103,236 - 101,233,691 (+)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	3	98,927,305 - 99,057,642 (+)	NCBI	Rnor_WKY
Rnor_6.0	3	92,518,679 - 92,665,731 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	92,640,752 - 92,665,644 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	99,168,111 - 99,308,723 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	87,870,558 - 87,992,401 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	87,766,997 - 87,888,821 (+)	NCBI
Celera	3	88,087,285 - 88,206,296 (+)	NCBI		Celera
Cytogenetic Map	3	q32	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

amyotrophic lateral sclerosis (ISO)

Cocaine-Related Disorders (ISO)

developmental and epileptic encephalopathy 41 (ISO)

epilepsy (ISO)

Huntington's disease (ISO)

intellectual disability (ISO)

Nerve Degeneration (ISO)

Stomach Neoplasms (ISO)

type 2 diabetes mellitus (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

(4-chloro-2-methylphenoxy)acetic acid (EXP)

(R,R,R)-alpha-tocopherol (ISO)

1,2-dichloroethane (ISO)

17alpha-ethynylestradiol (EXP,ISO)

17beta-estradiol (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

2,3-bis(4-hydroxyphenyl)propionitrile (EXP)

2,3-dimethoxynaphthalene-1,4-dione (ISO)

2-chloroethanol (EXP)

3,3',4,4'-tetrachlorobiphenyl (ISO)

3,3',5-triiodo-L-thyronine (ISO)

3-phenylprop-2-enal (ISO)

4,4'-sulfonyldiphenol (ISO)

5-aza-2'-deoxycytidine (ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

all-trans-retinol (ISO)

ammonium chloride (EXP)

ampicillin (ISO)

antimycin A (ISO)

antirheumatic drug (ISO)

Aroclor 1254 (EXP)

arsenous acid (ISO)

atorvastatin calcium (ISO)

azoxystrobin (ISO)

benzo[a]pyrene (ISO)

Benzo[k]fluoranthene (ISO)

bis(2-chloroethyl) sulfide (ISO)

bis(2-ethylhexyl) phthalate (EXP,ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

bleomycin A2 (EXP)

buta-1,3-diene (ISO)

butanal (ISO)

Butylparaben (EXP)

butyric acid (EXP,ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

cannabidiol (ISO)

cannabigerol (ISO)

carbon nanotube (ISO)

ceftriaxone (EXP)

CGP 52608 (ISO)

chlorpyrifos (EXP,ISO)

cisplatin (ISO)

clofibrate (ISO)

clozapine (EXP)

cobalt atom (ISO)

cobalt dichloride (EXP)

cocaine (EXP)

copper(II) sulfate (ISO)

corticosterone (ISO)

coumarin (EXP)

Cuprizon (EXP)

cyclosporin A (ISO)

DDE (EXP)

deguelin (ISO)

dexamethasone (ISO)

dextran sulfate (ISO)

diarsenic trioxide (ISO)

diazinon (EXP)

dibutyl phthalate (EXP)

dioxygen (EXP)

dorsomorphin (ISO)

doxorubicin (ISO)

enzacamene (EXP)

epoxiconazole (EXP)

ethanol (EXP,ISO)

folic acid (ISO)

folpet (ISO)

fulvestrant (EXP,ISO)

furan (EXP)

genistein (EXP)

haloperidol (EXP)

hesperidin (ISO)

hydrogen peroxide (ISO)

indole-3-methanol (EXP)

ivermectin (ISO)

kainic acid (EXP,ISO)

ketamine (EXP)

KT 5720 (EXP)

L-serine (EXP)

lead diacetate (EXP)

lead(0) (EXP)

lead(2+) (EXP)

linuron (EXP)

lipopolysaccharide (ISO)

LY294002 (EXP)

manganese atom (EXP,ISO)

manganese(0) (EXP,ISO)

manganese(II) chloride (EXP,ISO)

mercury dibromide (ISO)

metacetamol (ISO)

methamphetamine (EXP,ISO)

methapyrilene (EXP)

methoxychlor (EXP)

methylmercury chloride (EXP,ISO)

N-[2-(4-bromocinnamylamino)ethyl]isoquinoline-5-sulfonamide (EXP)

N-acetyl-L-cysteine (EXP,ISO)

N-nitrosomorpholine (EXP)

nifedipine (EXP)

ochratoxin A (EXP)

oxidopamine (EXP)

oxybenzone (EXP)

oxycodone (EXP)

p-chloromercuribenzoic acid (ISO)

p-toluidine (EXP)

paclitaxel (EXP)

paracetamol (EXP,ISO)

paraoxon (EXP)

pentachlorophenol (ISO)

pentanal (ISO)

perfluorooctane-1-sulfonic acid (EXP,ISO)

perfluorooctanoic acid (ISO)

phenformin (EXP)

phenobarbital (ISO)

phenylmercury acetate (ISO)

picoxystrobin (ISO)

pirinixic acid (EXP,ISO)

potassium dichromate (ISO)

prochloraz (EXP)

procymidone (EXP)

propanal (ISO)

pyrimidifen (ISO)

pyrrolidine dithiocarbamate (EXP,ISO)

quercetin (ISO)

quinazolines (EXP)

raloxifene (EXP)

resveratrol (EXP)

rifampicin (ISO)

Riluzole (EXP)

romidepsin (EXP)

rotenone (EXP)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

SB 431542 (ISO)

sodium arsenite (EXP,ISO)

Soman (EXP)

staurosporine (EXP)

tamoxifen (ISO)

tebufenpyrad (ISO)

tetrachloromethane (EXP,ISO)

thiamphenicol (ISO)

thifluzamide (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

toluene (EXP)

trichloroethene (ISO)

trichostatin A (EXP,ISO)

triptonide (ISO)

tris(2-butoxyethyl) phosphate (ISO)

Tungsten carbide (ISO)

tyrphostin AG 1478 (EXP)

valproic acid (EXP,ISO)

vinclozolin (EXP)

vorinostat (EXP)

WIN 55212-2 (EXP)

zinc atom (EXP)

zinc dichloride (ISO)

zinc(0) (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

acidic amino acid transport (IEA)

adult behavior (ISO)

cellular response to cocaine (ISO)

cellular response to extracellular stimulus (ISO)

cysteine transmembrane transport (IEA)

D-aspartate import across plasma membrane (ISO)

dicarboxylic acid transport (IEA)

glutathione biosynthetic process (ISO)

L-alpha-amino acid transmembrane transport (IEA)

L-amino acid transport (IEA)

L-aspartate import across plasma membrane (ISO)

L-aspartate transmembrane transport (IBA)

L-glutamate import across plasma membrane (IBA,ISO,ISS)

L-glutamate transmembrane transport (IBA,IMP,ISO)

monoatomic anion transmembrane transport (ISO)

multicellular organism aging (ISO)

multicellular organism growth (ISO)

nervous system development (ISO)

neurotransmitter reuptake (ISO)

neurotransmitter transport (TAS)

positive regulation of glucose import (ISO)

protein homotrimerization (ISO,ISS)

response to amino acid (ISO)

response to light stimulus (ISO)

response to wounding (ISO)

response to xenobiotic stimulus (ISO)

telencephalon development (ISO)

visual behavior (ISO)

Cellular Component

astrocyte projection (IDA,ISO)

axolemma (ISO)

axon (ISO)

cell body (IDA,ISO)

cell surface (ISO)

dendritic shaft (IDA)

dendritic spine (IDA)

glutamatergic synapse (ISO)

membrane (IEA,ISO)

membrane protein complex (IDA,ISO)

membrane raft (ISO)

neuron projection (IDA)

neuron projection terminus (ISO)

obsolete integral component of presynaptic membrane (ISO)

plasma membrane (IBA,IDA,IMP,ISO,ISS)

presynapse (ISO)

presynaptic membrane (IDA,ISO)

synapse (IDA,ISO)

vesicle (ISO)

Molecular Function

acidic amino acid transmembrane transporter activity (IEA)

cysteine transmembrane transporter activity (ISO)

glutamate:sodium symporter activity (IBA,IDA,ISO,ISS)

high-affinity L-glutamate transmembrane transporter activity (IDA,IMP,ISO,TAS)

L-amino acid transmembrane transporter activity (IEA)

L-glutamate transmembrane transporter activity (IBA,ISO)

metal ion binding (IEA)

monoatomic anion transmembrane transporter activity (ISO)

neutral L-amino acid transmembrane transporter activity (IBA)

organic anion transmembrane transporter activity (IEA)

protein binding (ISO)

symporter activity (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

amyotrophic lateral sclerosis pathway (IEA,ISO)

glutamate signaling pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Changes of NMDA receptor subunit (NR1, NR2B) and glutamate transporter (GLT1) mRNA expression in Huntington's disease--an in situ hybridization study.	Arzberger T, etal., J Neuropathol Exp Neurol. 1997 Apr;56(4):440-54.
2.	Expression of a variant form of the glutamate transporter GLT1 in neuronal cultures and in neurons and astrocytes in the rat brain.	Chen W, etal., J Neurosci 2002 Mar 15;22(6):2142-52.
3.	Similar perisynaptic glial localization for the Na+,K+-ATPase alpha 2 subunit and the glutamate transporters GLAST and GLT-1 in the rat somatosensory cortex.	Cholet N, etal., Cereb Cortex 2002 May;12(5):515-25.
4.	Preconditioning with cortical spreading depression decreases intraischemic cerebral glutamate levels and down-regulates excitatory amino acid transporters EAAT1 and EAAT2 from rat cerebal cortex plasma membranes.	Douen AG, etal., J Neurochem. 2000 Aug;75(2):812-8.
5.	Altered NMDA receptor trafficking in a yeast artificial chromosome transgenic mouse model of Huntington's disease.	Fan MM, etal., J Neurosci. 2007 Apr 4;27(14):3768-79.
6.	Glutamate transporter protein subtypes are expressed differentially during rat CNS development.	Furuta A, etal., J Neurosci. 1997 Nov 1;17(21):8363-75.
7.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
8.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
9.	Focal loss of the glutamate transporter EAAT2 in a transgenic rat model of SOD1 mutant-mediated amyotrophic lateral sclerosis (ALS).	Howland DS, etal., Proc Natl Acad Sci U S A 2002 Feb 5;99(3):1604-1609.
10.	KEGG: Kyoto Encyclopedia of Genes and Genomes	KEGG
11.	The number of glutamate transporter subtype molecules at glutamatergic synapses: chemical and stereological quantification in young adult rat brain.	Lehre KP and Danbolt NC, J Neurosci. 1998 Nov 1;18(21):8751-7.
12.	Aberrant RNA processing in a neurodegenerative disease: the cause for absent EAAT2, a glutamate transporter, in amyotrophic lateral sclerosis.	Lin CL, etal., Neuron 1998 Mar;20(3):589-602.
13.	The amino terminus of the glial glutamate transporter GLT-1 interacts with the LIM protein Ajuba.	Marie H, etal., Mol Cell Neurosci 2002 Feb;19(2):152-64.
14.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
15.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
16.	Cloning and expression of a rat brain L-glutamate transporter.	Pines G, etal., Nature 1992 Dec 3;360(6403):464-7.
17.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
18.	The rat hepatoma cell line H4-II-E-C3 expresses high activities of the high-affinity glutamate transporter GLT-1A.	Pollard M and McGivan J, FEBS Lett 2000 Nov 3;484(2):74-6.
19.	GOA pipeline	RGD automated data pipeline
20.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
21.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
22.	A splice variant of glutamate transporter GLT1/EAAT2 expressed in neurons: cloning and localization in rat nervous system.	Schmitt A, etal., Neuroscience 2002;109(1):45-61.

Additional References at PubMed

PMID:7521911	PMID:7698742	PMID:7913472	PMID:8099882	PMID:9180080	PMID:9373176	PMID:9539795	PMID:9671661	PMID:11744157	PMID:12420313	PMID:12535941	PMID:12957496
PMID:14750980	PMID:14766991	PMID:15009636	PMID:15187084	PMID:15265858	PMID:15337309	PMID:15337311	PMID:15390098	PMID:15483603	PMID:15494979	PMID:15739191	PMID:15755674
PMID:15789431	PMID:15892126	PMID:16024041	PMID:16079146	PMID:16175560	PMID:16197522	PMID:16292503	PMID:16324108	PMID:16474996	PMID:16718509	PMID:16738240	PMID:16868771
PMID:16950847	PMID:16987241	PMID:17028421	PMID:17122424	PMID:17138558	PMID:17213861	PMID:17254611	PMID:17346885	PMID:17442809	PMID:17680651	PMID:17701165	PMID:17981401
PMID:18079058	PMID:18248606	PMID:18381652	PMID:18384122	PMID:18428036	PMID:18671901	PMID:18720407	PMID:18720515	PMID:18805448	PMID:18973588	PMID:19200233	PMID:19323820
PMID:19323997	PMID:19328838	PMID:19428804	PMID:19428805	PMID:19457061	PMID:19551376	PMID:19570219	PMID:19614985	PMID:19625514	PMID:19651762	PMID:19706515	PMID:19728998
PMID:19747495	PMID:19804828	PMID:19806886	PMID:19998491	PMID:20072121	PMID:20152809	PMID:20193040	PMID:20375134	PMID:20547213	PMID:20685337	PMID:21098017	PMID:21110225
PMID:21233495	PMID:21258616	PMID:21371514	PMID:21399631	PMID:21426345	PMID:21693777	PMID:21700703	PMID:21730107	PMID:21781120	PMID:21853027	PMID:21853059	PMID:21925558
PMID:21964391	PMID:22052455	PMID:22069320	PMID:22171032	PMID:22266516	PMID:22266730	PMID:22593010	PMID:22645130	PMID:22710775	PMID:22871113	PMID:22895544	PMID:23020698
PMID:23392471	PMID:23602887	PMID:23638698	PMID:23665075	PMID:23694703	PMID:23697999	PMID:23936321	PMID:23985782	PMID:24307171	PMID:24442982	PMID:24469401	PMID:24611756
PMID:24650590	PMID:24687412	PMID:24735535	PMID:24753081	PMID:24836816	PMID:24866234	PMID:24907601	PMID:25059512	PMID:25454285	PMID:25480579	PMID:25716834	PMID:25834045
PMID:26031379	PMID:26037264	PMID:26301411	PMID:26459476	PMID:26464063	PMID:26690923	PMID:26732590	PMID:26861954	PMID:26920805	PMID:27060486	PMID:27189737	PMID:27226528
PMID:27247047	PMID:27430327	PMID:27438618	PMID:27769869	PMID:27837432	PMID:28104249	PMID:28461494	PMID:28677303	PMID:28771710	PMID:29045497	PMID:29350434	PMID:29375045
PMID:29431649	PMID:29476059	PMID:29603414	PMID:30360015	PMID:30558468	PMID:30590449	PMID:30799685	PMID:30915775	PMID:31004734	PMID:31019528	PMID:31872442	PMID:32008166
PMID:32170887	PMID:32357304	PMID:32433937	PMID:32621862	PMID:32650029	PMID:32847971	PMID:33619583	PMID:33860761	PMID:34197892	PMID:34719508	PMID:35451738

Genomics

Comparative Map Data

Slc1a2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	3	89,005,129 - 89,126,498 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	89,005,129 - 89,126,498 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	92,504,212 - 92,634,668 (+)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	3	101,103,236 - 101,233,691 (+)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	3	98,927,305 - 99,057,642 (+)	NCBI	Rnor_WKY
Rnor_6.0	3	92,518,679 - 92,665,731 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	92,640,752 - 92,665,644 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	99,168,111 - 99,308,723 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	87,870,558 - 87,992,401 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	87,766,997 - 87,888,821 (+)	NCBI
Celera	3	88,087,285 - 88,206,296 (+)	NCBI		Celera
Cytogenetic Map	3	q32	NCBI

SLC1A2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	35,251,205 - 35,420,507 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	11	35,251,205 - 35,420,063 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	11	35,272,752 - 35,441,605 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	35,229,328 - 35,397,681 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	11	35,229,328 - 35,397,372	NCBI
Celera	11	35,420,071 - 35,588,420 (-)	NCBI		Celera
Cytogenetic Map	11	p13	NCBI
HuRef	11	34,972,036 - 35,140,670 (-)	NCBI		HuRef
CHM1_1	11	35,271,219 - 35,439,999 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	11	35,389,505 - 35,558,889 (-)	NCBI		T2T-CHM13v2.0

Slc1a2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	102,488,584 - 102,621,129 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	102,489,004 - 102,621,129 (+)	Ensembl		GRCm39 Ensembl
GRCm38	2	102,658,239 - 102,790,784 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	102,658,659 - 102,790,784 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	102,498,840 - 102,630,941 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	102,507,277 - 102,578,945 (+)	NCBI		MGSCv36	mm8
Celera	2	103,898,008 - 104,034,664 (+)	NCBI		Celera
Cytogenetic Map	2	E2	NCBI
cM Map	2	54.13	NCBI

Slc1a2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955422	10,930,296 - 11,073,032 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955422	10,929,987 - 11,082,220 (+)	NCBI	ChiLan1.0	ChiLan1.0

SLC1A2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	11	35,098,291 - 35,266,940 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	35,107,920 - 35,265,878 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	11	35,223,811 - 35,392,799 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3

SLC1A2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	18	32,565,258 - 32,717,052 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	18	32,565,258 - 32,709,225 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	18	32,172,140 - 32,315,018 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	18	33,175,536 - 33,327,487 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	18	33,175,537 - 33,319,660 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	18	32,737,141 - 32,880,123 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	18	32,322,154 - 32,465,264 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	18	32,967,648 - 33,106,043 (+)	NCBI		UU_Cfam_GSD_1.0

Slc1a2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	29,654,306 - 29,802,620 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936533	2,779,518 - 2,918,298 (+)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936533	2,779,650 - 2,918,640 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SLC1A2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	25,604,950 - 25,848,276 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	25,603,892 - 25,771,840 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	27,968,216 - 28,136,634 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SLC1A2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	29,845,512 - 30,012,261 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	29,847,043 - 29,989,975 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	126,963,701 - 127,135,271 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Slc1a2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624767	11,768,951 - 11,911,017 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624767	11,768,942 - 11,919,315 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Slc1a2
737 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	518
Count of miRNA genes:	243
Interacting mature miRNAs:	300
Transcripts:	ENSRNOT00000007604
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2290452	Scl56	Serum cholesterol level QTL 56	2.26		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	3	1	91609953	Rat
1358905	Hrtrt17	Heart rate QTL 17	5.9	0.000014	heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	3	10861912	89878372	Rat
1358885	Bp251	Blood pressure QTL 251	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	14489145	121056321	Rat
1358888	Bp264	Blood pressure QTL 264	4.43		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	14489145	121056321	Rat
737818	Hcar12	Hepatocarcinoma resistance QTL 12	2.6		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	3	29463235	118376539	Rat
61419	Cia11	Collagen induced arthritis QTL 11	5.6		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	3	30356773	98535386	Rat
70216	Cm14	Cardiac mass QTL 14	2.1		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	31172320	163586636	Rat
1354604	Bw36	Body weight QTL 36	2.9		body mass (VT:0001259)	body weight (CMO:0000012)	3	33703347	104104347	Rat
1358362	Srcrt2	Stress Responsive Cort QTL 2	2.78		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	38192233	133483320	Rat
1331777	Bw24	Body weight QTL 24	3.503		body mass (VT:0001259)	body weight (CMO:0000012)	3	39454637	89115240	Rat
1331795	Rf30	Renal function QTL 30	3.708		urine potassium amount (VT:0010539)	urine potassium level (CMO:0000128)	3	39454637	89115240	Rat
1354597	Kidm13	Kidney mass QTL 13	2.9		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	3	41874578	104104347	Rat
2301970	Bw81	Body weight QTL 81	5.19		body mass (VT:0001259)	body weight (CMO:0000012)	3	41874578	155617519	Rat
2301971	Cm71	Cardiac mass QTL 71	4.63		heart left ventricle mass (VT:0007031)	heart left ventricle weight (CMO:0000776)	3	41874578	155617519	Rat
1300178	Hrtrt4	Heart rate QTL 4	3.74		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	3	43827364	90905114	Rat
1581503	Cm58	Cardiac mass QTL 58	2.7	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	43827364	121056321	Rat
1559282	Emca5	Estrogen-induced mammary cancer QTL 5	3.9		mammary gland integrity trait (VT:0010552)	percentage of study population developing mammary tumors during a period of time (CMO:0000948)	3	43827364	169034231	Rat
2292591	Esta4	Estrogen-induced thymic atrophy QTL 4			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	3	47233211	147415807	Rat
1358186	Ept2	Estrogen-induced pituitary tumorigenesis QTL 2	8.3		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	47233430	110362260	Rat
2292613	Ept16	Estrogen-induced pituitary tumorigenesis QTL 16	8.3		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	47233430	110362260	Rat
631665	Bw8	Body weight QTL 8	5.5		body mass (VT:0001259)	body weight (CMO:0000012)	3	50437042	119183768	Rat
724523	Tsu1	Thymus enlargement suppressive QTL 1	3.84		thymus mass (VT:0004954)	thymus weight to body weight ratio (CMO:0000612)	3	50437504	115638231	Rat
1582218	Bw74	Body weight QTL 74	3.9	0.0021	body mass (VT:0001259)	body weight (CMO:0000012)	3	53184593	115665732	Rat
1582238	Bw68	Body weight QTL 68	3.2	0.0064	body mass (VT:0001259)	body weight (CMO:0000012)	3	53184593	115665732	Rat
1582239	Epfw1	Epididymal fat weight QTL 1	4.5	0.0006	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	3	53184593	115665732	Rat
61377	Edpm3	Estrogen-dependent pituitary mass QTL 3	7.05	0.038	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	53184692	89878207	Rat
731180	Bp152	Blood pressure QTL 152		0.03	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	53781112	91609953	Rat
731180	Bp152	Blood pressure QTL 152		0.03	arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	3	53781112	91609953	Rat
731180	Bp152	Blood pressure QTL 152		0.03	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	53781112	91609953	Rat
1581568	Rf53	Renal function QTL 53			urine total protein amount (VT:0000032)	urine protein excretion rate to body weight ratio (CMO:0001099)	3	56395968	161299569	Rat
8662816	Vetf4	Vascular elastic tissue fragility QTL 4	4		renal artery integrity trait (VT:0010642)	number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)	3	59242096	157323038	Rat
1300111	Rf12	Renal function QTL 12	3.78		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	3	61017749	121056321	Rat
631200	Cm25	Cardiac mass QTL 25	4.8	0.0001	heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	3	61134348	89115068	Rat
1582210	Bw71	Body weight QTL 71	3.3	0.0012	body mass (VT:0001259)	body weight (CMO:0000012)	3	64655305	115665732	Rat
1582221	Kidm30	Kidney mass QTL 30	3.5	0.0008	kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	3	64655305	115665732	Rat
12879848	Bw181	Body weght QTL 181		0.015	body mass (VT:0001259)	body weight (CMO:0000012)	3	70348525	121056321	Rat
2301414	Kidm37	Kidney mass QTL 37		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	70653097	121056321	Rat
1600376	Arunc5	Aerobic running capacity QTL 5		0.21	exercise endurance trait (VT:0002332)	maximum distance run on treadmill (CMO:0001406)	3	73376539	118376539	Rat
1581546	Pur13	Proteinuria QTL 13	2.93	0.0335	urine total protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	3	78196190	146592722	Rat
2302273	Gluco35	Glucose level QTL 35	5.3	0.001	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	80800231	114297550	Rat

Markers in Region

D3Rat27

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	89,115,068 - 89,115,240 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	92,654,302 - 92,654,473	NCBI	Rnor6.0
Rnor_5.0	3	99,297,509 - 99,297,680	UniSTS	Rnor5.0
RGSC_v3.4	3	87,981,086 - 87,981,257	UniSTS	RGSC3.4
RGSC_v3.4	3	87,981,062 - 87,981,257	RGD	RGSC3.4
RGSC_v3.1	3	87,877,514 - 87,877,685	RGD
Celera	3	88,194,883 - 88,195,054	UniSTS
RH 3.4 Map	3	669.6	RGD
RH 3.4 Map	3	669.6	UniSTS
RH 2.0 Map	3	440.8	RGD
SHRSP x BN Map	3	47.2698	RGD
Cytogenetic Map	3	q31	UniSTS

BF386143

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	89,112,161 - 89,112,321 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	92,651,395 - 92,651,554	NCBI	Rnor6.0
Rnor_5.0	3	99,294,602 - 99,294,761	UniSTS	Rnor5.0
RGSC_v3.4	3	87,978,179 - 87,978,338	UniSTS	RGSC3.4
Celera	3	88,191,976 - 88,192,135	UniSTS
RH 3.4 Map	3	669.7	UniSTS
Cytogenetic Map	3	q31	UniSTS

D43796

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	89,126,535 - 89,126,702 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	92,665,769 - 92,665,935	NCBI	Rnor6.0
Rnor_5.0	3	99,308,761 - 99,308,927	UniSTS	Rnor5.0
RGSC_v3.4	3	87,992,439 - 87,992,605	UniSTS	RGSC3.4
Celera	3	88,206,334 - 88,206,500	UniSTS
Cytogenetic Map	3	q31	UniSTS

RH138571

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	89,122,654 - 89,122,802 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	92,661,888 - 92,662,035	NCBI	Rnor6.0
Rnor_5.0	3	99,304,880 - 99,305,027	UniSTS	Rnor5.0
RGSC_v3.4	3	87,988,558 - 87,988,705	UniSTS	RGSC3.4
Celera	3	88,202,453 - 88,202,600	UniSTS
RH 3.4 Map	3	670.4	UniSTS
Cytogenetic Map	3	q31	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High									1
Medium			5	5		5			69		7
Low	3	14	31	22	18	22	5	5	4	13	26	11	5
Below cutoff		25	21	14	1	14	3	5		21	8		3

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001035233	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001302089	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_017215	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC109112	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC113891	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF297648	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF451299	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF465909	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY044832	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY069978	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY578981	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY643513	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY643516	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY643517	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CB760876	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473949	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DQ489741	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	EF017228	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000118	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JN132400	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	KP966087	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	KR006257	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	U15098	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	X67857	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000007604 ⟹ ENSRNOP00000007604

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	89,081,028 - 89,125,521 (+)	Ensembl
Rnor_6.0 Ensembl	3	92,640,752 - 92,665,644 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000098273 ⟹ ENSRNOP00000091331

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	89,005,178 - 89,122,959 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000099140 ⟹ ENSRNOP00000097282

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	89,005,178 - 89,126,498 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000106964 ⟹ ENSRNOP00000093236

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	89,081,028 - 89,122,959 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000109994 ⟹ ENSRNOP00000094162

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	89,005,129 - 89,122,959 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000119447 ⟹ ENSRNOP00000097017

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	89,005,178 - 89,126,434 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000119905 ⟹ ENSRNOP00000093496

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	89,053,004 - 89,122,959 (+)	Ensembl

RefSeq Acc Id:

NM_001035233 ⟹ NP_001030310

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	89,005,129 - 89,122,961 (+)	NCBI
Rnor_6.0	3	92,518,679 - 92,662,194 (+)	NCBI
Rnor_5.0	3	99,168,111 - 99,308,723 (+)	NCBI
RGSC_v3.4	3	87,870,558 - 87,992,401 (+)	RGD
Celera	3	88,087,285 - 88,202,759 (+)	NCBI

Sequence:

show sequence

GGCGGAGAGAGGCTGCCCGTTAAATACCGCTCCCCGCCGCACTCCGGGCTCACCCAGCTCGTCG
CCACTGTCTCCAGACCGTGCCCGGGAGGAGGGGGCGTTCCCCACGCCATGGCATCAACCGAGGG
TGCCAACAATATGCCCAAGCAGGTGGAAGTGCGCATGCACGACAGCCACCTCAGCTCCGAGGAG
CCAAAGCACCGAAACCTGGGCATGCGCATGTGCGACAAGCTGGGGAAGAACCTCCTGCTCTCAC
TGACTGTGTTTGGTGTCATCCTGGGAGCAGTATGTGGCGGGCTGCTTCGCTTGGCGGCTCCCAT
CCACCCTGATGTGGTCATGTTGATAGCCTTCCCGGGGGACATCCTCATGAGGATGCTGAAGATG
CTCATCCTCCCTCTCATCATTTCCAGTCTCATCACAGGGCTGTCAGGGCTGGATGCTAAAGCCA
GCGGCCGCCTAGGCACGAGAGCCATGGTATATTACATGTCCACGACCATCATTGCCGCTGTGCT
GGGGGTCATCCTGGTGTTGGCCATCCACCCTGGGAATCCCAAACTCAAGAAGCAGCTGGGGCCT
GGGAAGAAGAACGACGAGGTGTCCAGCCTGGATGCCTTCCTGGATCTCATTAGAAATCTCTTCC
CGGAGAACCTGGTACAAGCCTGTTTCCAACAGATTCAGACTGTGACAAAGAAAGTTCTGGTGGC
ACCTCCATCCGAGGAGGCCAATACAACCAAGGCAGTCATCTCCCTGTTGAATGAGACCATGAAT
GAGGCCCCTGAAGAAACTAAGATCGTTATCAAGAAGGGCCTGGAGTTCAAGGACGGGATGAATG
TCTTAGGTCTGATTGGATTCTTTATTGCTTTCGGCATTGCCATGGGGAAGATGGGTGAGCAGGC
CAAGCTGATGGTGGAGTTCTTCAACATTCTGAACGAGATTGTCATGAAGTTAGTGATCATGATC
ATGTGGTATTCCCCGCTGGGTATCGCCTGCTTGATCTGTGGGAAGATCATCGCCATCAAGGACT
TAGAAGTGGTTGCTAGGCAGCTGGGGATGTACATGATCACAGTGATCGTGGGCCTCATCATTCA
TGGGGGCATCTTTCTCCCCTTGATTTACTTTGTAGTGACCAGAAAAAACCCATTCTCCTTTTTT
GCTGGCATTTTCCAAGCCTGGATCACTGCCCTGGGAACCGCTTCCAGTGCTGGAACTTTGCCTG
TCACCTTCCGTTGCTTGGAAGATAATCTAGGGATTGACAAGCGTGTGACCAGATTCGTCCTCCC
AGTCGGAGCAACCATTAACATGGATGGTACAGCCCTTTACGAAGCCGTGGCAGCCATCTTCATA
GCCCAGATGAATGGGGTCATCCTGGATGGAGGTCAGATAGTGACTGTAAGCCTTACAGCAACTC
TGGCGAGCATTGGTGCAGCCAGTATTCCCAGCGCCGGGTTGGTCACCATGCTCCTCATTCTCAC
AGCTGTGGGCCTGCCGACAGAGGACATCAGTCTGCTGGTGGCAGTGGACTGGCTGCTGGATAGA
ATGAGAACTTCGGTCAATGTAGTGGGCGATTCTTTTGGGGCTGGGATTGTCTATCACCTTTCCA
AGTCCGAGCTGGACACCATTGACTCCCAACACCGAATGCACGAAGACATCGAAATGACCAAGAC
GCAGTCCATTTATGACGACACGAAGAACCACAGGGAAAGCAACTCTAATCAGTGTGTCAATGCC
GCACACAACTCTGTCGTAATAGATGAGTGCAAGGTACCTTTCCCATTCCTGGATATCGAGACCT
GCATATGAATAGTGCATGCTGGACTCTTACAAAAAAGCACCATCCCCTGCATCCATTCTTACCA
TTCTTTGTAAGGAATCATGTCACCCAAGCTTCTTTGGGGCCCAGACCATCTCACTCTGCATCCA
GCATGGTGGGACATCAGCAAGTCTGACTCCAAAAGGACCAATCAGTTGCTTGTTTCACCAGATT
CCCACATCCGCCCCCTTACTCTAATTTGGTCAATTTTCTTCACTCTTTGGGCCAAGATTTTGTG
GTTGTCAGAACTTTGATGGCCTTCAGATATTCTCTTCCTCAAAGGAAGGGTCAGAAAAATATGT
AGACCAAGTATCACTGACTTTATATAGCACGAGTATTCCTCCCTACTCTGTAATACAAATTGCT
TTTTAAAAAGCTCATATAAAAGTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_001302089 ⟹ NP_001289018

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	89,081,495 - 89,126,498 (+)	NCBI
Rnor_6.0	3	92,640,766 - 92,665,731 (+)	NCBI
Celera	3	88,161,302 - 88,206,296 (+)	NCBI

Sequence:

show sequence

CTCCTGTAGATAAGAGAATGGTCAGTGCCAACAATATGCCCAAGCAGGTGGAAGTGCGCATGCA
CGACAGCCACCTCAGCTCCGAGGAGCCAAAGCACCGAAACCTGGGCATGCGCATGTGCGACAAG
CTGGGGAAGAACCTCCTGCTCTCACTGACTGTGTTTGGTGTCATCCTGGGAGCAGTATGTGGCG
GGCTGCTTCGCTTGGCGGCTCCCATCCACCCTGATGTGGTCATGTTGATAGCCTTCCCGGGGGA
CATCCTCATGAGGATGCTGAAGATGCTCATCCTCCCTCTCATCATTTCCAGTCTCATCACAGGG
CTGTCAGGGCTGGATGCTAAAGCCAGCGGCCGCCTAGGCACGAGAGCCATGGTATATTACATGT
CCACGACCATCATTGCCGCTGTGCTGGGGGTCATCCTGGTGTTGGCCATCCACCCTGGGAATCC
CAAACTCAAGAAGCAGCTGGGGCCTGGGAAGAAGAACGACGAGGTGTCCAGCCTGGATGCCTTC
CTGGATCTCATTAGAAATCTCTTCCCGGAGAACCTGGTACAAGCCTGTTTCCAACAGATTCAGA
CTGTGACAAAGAAAGTTCTGGTGGCACCTCCATCCGAGGAGGCCAATACAACCAAGGCAGTCAT
CTCCCTGTTGAATGAGACCATGAATGAGGCCCCTGAAGAAACTAAGATCGTTATCAAGAAGGGC
CTGGAGTTCAAGGACGGGATGAATGTCTTAGGTCTGATTGGATTCTTTATTGCTTTCGGCATTG
CCATGGGGAAGATGGGTGAGCAGGCCAAGCTGATGGTGGAGTTCTTCAACATTCTGAACGAGAT
TGTCATGAAGTTAGTGATCATGATCATGTGGTATTCCCCGCTGGGTATCGCCTGCTTGATCTGT
GGGAAGATCATCGCCATCAAGGACTTAGAAGTGGTTGCTAGGCAGCTGGGGATGTACATGATCA
CAGTGATCGTGGGCCTCATCATTCATGGGGGCATCTTTCTCCCCTTGATTTACTTTGTAGTGAC
CAGAAAAAACCCATTCTCCTTTTTTGCTGGCATTTTCCAAGCCTGGATCACTGCCCTGGGAACC
GCTTCCAGTGCTGGAACTTTGCCTGTCACCTTCCGTTGCTTGGAAGATAATCTAGGGATTGACA
AGCGTGTGACCAGATTCGTCCTCCCAGTCGGAGCAACCATTAACATGGATGGTACAGCCCTTTA
CGAAGCCGTGGCAGCCATCTTCATAGCCCAGATGAATGGGGTCATCCTGGATGGAGGTCAGATA
GTGACTGTAAGCCTTACAGCAACTCTGGCGAGCATTGGTGCAGCCAGTATTCCCAGCGCCGGGT
TGGTCACCATGCTCCTCATTCTCACAGCTGTGGGCCTGCCGACAGAGGACATCAGTCTGCTGGT
GGCAGTGGACTGGCTGCTGGATAGAATGAGAACTTCGGTCAATGTAGTGGGCGATTCTTTTGGG
GCTGGGATTGTCTATCACCTTTCCAAGTCCGAGCTGGACACCATTGACTCCCAACACCGAATGC
ACGAAGACATCGAAATGACCAAGACGCAGTCCATTTATGACGACACGAAGAACCACAGGGAAAG
CAACTCTAATCAGTGTGTCTATGCCGCACACAACTCTGTCGTAATAGATGAGTGCAAGGTAACT
CTGGCGGCCAATGGAAAGTCAGCTGACTGCAGTGTTGAGGAAGAACCTTGGAAACGTGAAAAAT
AATGACCCGATTCTCAGCCAATTCTTGAATAAACTCCCCAGCGTATCTTATGGTAAAAGATGCT
CTAAACAGGCTTCCTTTACAAAAGG

hide sequence

RefSeq Acc Id:

NM_017215 ⟹ NP_058911

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	89,005,129 - 89,126,498 (+)	NCBI
Rnor_6.0	3	92,518,679 - 92,665,731 (+)	NCBI
Rnor_5.0	3	99,168,111 - 99,308,723 (+)	NCBI
RGSC_v3.4	3	87,870,558 - 87,992,401 (+)	RGD
Celera	3	88,087,285 - 88,206,296 (+)	RGD

Sequence:

show sequence

GGCGGAGAGAGGCTGCCCGTTAAATACCGCTCCCCGCCGCACTCCGGGCTCACCCAGCTCGTCG
CCACTGTCTCCAGACCGTGCCCGGGAGGAGGGGGCGTTCCCCACGCCATGGCATCAACCGAGGG
TGCCAACAATATGCCCAAGCAGGTGGAAGTGCGCATGCACGACAGCCACCTCAGCTCCGAGGAG
CCAAAGCACCGAAACCTGGGCATGCGCATGTGCGACAAGCTGGGGAAGAACCTCCTGCTCTCAC
TGACTGTGTTTGGTGTCATCCTGGGAGCAGTATGTGGCGGGCTGCTTCGCTTGGCGGCTCCCAT
CCACCCTGATGTGGTCATGTTGATAGCCTTCCCGGGGGACATCCTCATGAGGATGCTGAAGATG
CTCATCCTCCCTCTCATCATTTCCAGTCTCATCACAGGGCTGTCAGGGCTGGATGCTAAAGCCA
GCGGCCGCCTAGGCACGAGAGCCATGGTATATTACATGTCCACGACCATCATTGCCGCTGTGCT
GGGGGTCATCCTGGTGTTGGCCATCCACCCTGGGAATCCCAAACTCAAGAAGCAGCTGGGGCCT
GGGAAGAAGAACGACGAGGTGTCCAGCCTGGATGCCTTCCTGGATCTCATTAGAAATCTCTTCC
CGGAGAACCTGGTACAAGCCTGTTTCCAACAGATTCAGACTGTGACAAAGAAAGTTCTGGTGGC
ACCTCCATCCGAGGAGGCCAATACAACCAAGGCAGTCATCTCCCTGTTGAATGAGACCATGAAT
GAGGCCCCTGAAGAAACTAAGATCGTTATCAAGAAGGGCCTGGAGTTCAAGGACGGGATGAATG
TCTTAGGTCTGATTGGATTCTTTATTGCTTTCGGCATTGCCATGGGGAAGATGGGTGAGCAGGC
CAAGCTGATGGTGGAGTTCTTCAACATTCTGAACGAGATTGTCATGAAGTTAGTGATCATGATC
ATGTGGTATTCCCCGCTGGGTATCGCCTGCTTGATCTGTGGGAAGATCATCGCCATCAAGGACT
TAGAAGTGGTTGCTAGGCAGCTGGGGATGTACATGATCACAGTGATCGTGGGCCTCATCATTCA
TGGGGGCATCTTTCTCCCCTTGATTTACTTTGTAGTGACCAGAAAAAACCCATTCTCCTTTTTT
GCTGGCATTTTCCAAGCCTGGATCACTGCCCTGGGAACCGCTTCCAGTGCTGGAACTTTGCCTG
TCACCTTCCGTTGCTTGGAAGATAATCTAGGGATTGACAAGCGTGTGACCAGATTCGTCCTCCC
AGTCGGAGCAACCATTAACATGGATGGTACAGCCCTTTACGAAGCCGTGGCAGCCATCTTCATA
GCCCAGATGAATGGGGTCATCCTGGATGGAGGTCAGATAGTGACTGTAAGCCTTACAGCAACTC
TGGCGAGCATTGGTGCAGCCAGTATTCCCAGCGCCGGGTTGGTCACCATGCTCCTCATTCTCAC
AGCTGTGGGCCTGCCGACAGAGGACATCAGTCTGCTGGTGGCAGTGGACTGGCTGCTGGATAGA
ATGAGAACTTCGGTCAATGTAGTGGGCGATTCTTTTGGGGCTGGGATTGTCTATCACCTTTCCA
AGTCCGAGCTGGACACCATTGACTCCCAACACCGAATGCACGAAGACATCGAAATGACCAAGAC
GCAGTCCATTTATGACGACACGAAGAACCACAGGGAAAGCAACTCTAATCAGTGTGTCTATGCC
GCACACAACTCTGTCGTAATAGATGAGTGCAAGGTAACTCTGGCGGCCAATGGAAAGTCAGCTG
ACTGCAGTGTTGAGGAAGAACCTTGGAAACGTGAAAAATAATGACCCGATTCTCAGCCAATTCT
TGAATAAACTCCCCAGCGTATCTTATGGTAAAAGATGCTCTAAACAGGCTTCCTTTACAAAAGG

hide sequence

Protein Sequences


Protein RefSeqs	NP_001030310	(Get FASTA)	NCBI Sequence Viewer
	NP_001289018	(Get FASTA)	NCBI Sequence Viewer
	NP_058911	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAA93061	(Get FASTA)	NCBI Sequence Viewer
	AAA93062	(Get FASTA)	NCBI Sequence Viewer
	AAG13411	(Get FASTA)	NCBI Sequence Viewer
	AAK98779	(Get FASTA)	NCBI Sequence Viewer
	AAL55405	(Get FASTA)	NCBI Sequence Viewer
	AAL86765	(Get FASTA)	NCBI Sequence Viewer
	AAM21604	(Get FASTA)	NCBI Sequence Viewer
	AAS89003	(Get FASTA)	NCBI Sequence Viewer
	AAT66426	(Get FASTA)	NCBI Sequence Viewer
	AAT66429	(Get FASTA)	NCBI Sequence Viewer
	AAT66430	(Get FASTA)	NCBI Sequence Viewer
	ABF47217	(Get FASTA)	NCBI Sequence Viewer
	AEO52639	(Get FASTA)	NCBI Sequence Viewer
	AMD11600	(Get FASTA)	NCBI Sequence Viewer
	AMD11602	(Get FASTA)	NCBI Sequence Viewer
	CAA48042	(Get FASTA)	NCBI Sequence Viewer
	EDL79643	(Get FASTA)	NCBI Sequence Viewer
	EDL79644	(Get FASTA)	NCBI Sequence Viewer
	EDL79645	(Get FASTA)	NCBI Sequence Viewer
	EDL79646	(Get FASTA)	NCBI Sequence Viewer
	P31596	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:	NP_058911 ⟸ NM_017215
- Peptide Label:	isoform a
- UniProtKB:	P31596 (UniProtKB/Swiss-Prot), Q8K5B5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MASTEGANNMPKQVEVRMHDSHLSSEEPKHRNLGMRMCDKLGKNLLLSLTVFGVILGAVCGGLL RLAAPIHPDVVMLIAFPGDILMRMLKMLILPLIISSLITGLSGLDAKASGRLGTRAMVYYMSTT IIAAVLGVILVLAIHPGNPKLKKQLGPGKKNDEVSSLDAFLDLIRNLFPENLVQACFQQIQTVT KKVLVAPPSEEANTTKAVISLLNETMNEAPEETKIVIKKGLEFKDGMNVLGLIGFFIAFGIAMG KMGEQAKLMVEFFNILNEIVMKLVIMIMWYSPLGIACLICGKIIAIKDLEVVARQLGMYMITVI VGLIIHGGIFLPLIYFVVTRKNPFSFFAGIFQAWITALGTASSAGTLPVTFRCLEDNLGIDKRV TRFVLPVGATINMDGTALYEAVAAIFIAQMNGVILDGGQIVTVSLTATLASIGAASIPSAGLVT MLLILTAVGLPTEDISLLVAVDWLLDRMRTSVNVVGDSFGAGIVYHLSKSELDTIDSQHRMHED IEMTKTQSIYDDTKNHRESNSNQCVYAAHNSVVIDECKVTLAANGKSADCSVEEEPWKREK hide sequence

RefSeq Acc Id:	NP_001030310 ⟸ NM_001035233
- Peptide Label:	isoform b
- UniProtKB:	A0A8I6AL04 (UniProtKB/TrEMBL)
- Sequence:	show sequence MASTEGANNMPKQVEVRMHDSHLSSEEPKHRNLGMRMCDKLGKNLLLSLTVFGVILGAVCGGLL RLAAPIHPDVVMLIAFPGDILMRMLKMLILPLIISSLITGLSGLDAKASGRLGTRAMVYYMSTT IIAAVLGVILVLAIHPGNPKLKKQLGPGKKNDEVSSLDAFLDLIRNLFPENLVQACFQQIQTVT KKVLVAPPSEEANTTKAVISLLNETMNEAPEETKIVIKKGLEFKDGMNVLGLIGFFIAFGIAMG KMGEQAKLMVEFFNILNEIVMKLVIMIMWYSPLGIACLICGKIIAIKDLEVVARQLGMYMITVI VGLIIHGGIFLPLIYFVVTRKNPFSFFAGIFQAWITALGTASSAGTLPVTFRCLEDNLGIDKRV TRFVLPVGATINMDGTALYEAVAAIFIAQMNGVILDGGQIVTVSLTATLASIGAASIPSAGLVT MLLILTAVGLPTEDISLLVAVDWLLDRMRTSVNVVGDSFGAGIVYHLSKSELDTIDSQHRMHED IEMTKTQSIYDDTKNHRESNSNQCVNAAHNSVVIDECKVPFPFLDIETCI hide sequence

RefSeq Acc Id:	NP_001289018 ⟸ NM_001302089
- Peptide Label:	isoform c
- UniProtKB:	P31596 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MVSANNMPKQVEVRMHDSHLSSEEPKHRNLGMRMCDKLGKNLLLSLTVFGVILGAVCGGLLRLA APIHPDVVMLIAFPGDILMRMLKMLILPLIISSLITGLSGLDAKASGRLGTRAMVYYMSTTIIA AVLGVILVLAIHPGNPKLKKQLGPGKKNDEVSSLDAFLDLIRNLFPENLVQACFQQIQTVTKKV LVAPPSEEANTTKAVISLLNETMNEAPEETKIVIKKGLEFKDGMNVLGLIGFFIAFGIAMGKMG EQAKLMVEFFNILNEIVMKLVIMIMWYSPLGIACLICGKIIAIKDLEVVARQLGMYMITVIVGL IIHGGIFLPLIYFVVTRKNPFSFFAGIFQAWITALGTASSAGTLPVTFRCLEDNLGIDKRVTRF VLPVGATINMDGTALYEAVAAIFIAQMNGVILDGGQIVTVSLTATLASIGAASIPSAGLVTMLL ILTAVGLPTEDISLLVAVDWLLDRMRTSVNVVGDSFGAGIVYHLSKSELDTIDSQHRMHEDIEM TKTQSIYDDTKNHRESNSNQCVYAAHNSVVIDECKVTLAANGKSADCSVEEEPWKREK hide sequence

RefSeq Acc Id:

ENSRNOP00000007604 ⟸ ENSRNOT00000007604

RefSeq Acc Id:

ENSRNOP00000094162 ⟸ ENSRNOT00000109994

RefSeq Acc Id:

ENSRNOP00000091331 ⟸ ENSRNOT00000098273

RefSeq Acc Id:

ENSRNOP00000093236 ⟸ ENSRNOT00000106964

RefSeq Acc Id:

ENSRNOP00000097282 ⟸ ENSRNOT00000099140

RefSeq Acc Id:

ENSRNOP00000097017 ⟸ ENSRNOT00000119447

RefSeq Acc Id:

ENSRNOP00000093496 ⟸ ENSRNOT00000119905

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-P31596-F1-model_v2	AlphaFold	P31596	1-573	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:3697	AgrOrtholog
BioCyc Gene	G2FUF-48594	BioCyc
Ensembl Genes	ENSRNOG00000005479	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000007604	ENTREZGENE
	ENSRNOP00000007604.7	UniProtKB/TrEMBL
	ENSRNOP00000091331.1	UniProtKB/TrEMBL
	ENSRNOP00000093236.1	UniProtKB/TrEMBL
	ENSRNOP00000093496.1	UniProtKB/TrEMBL
	ENSRNOP00000094162	ENTREZGENE
	ENSRNOP00000094162.1	UniProtKB/TrEMBL
	ENSRNOP00000097017.1	UniProtKB/TrEMBL
	ENSRNOP00000097282	ENTREZGENE
	ENSRNOP00000097282.1	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000007604	ENTREZGENE
	ENSRNOT00000007604.7	UniProtKB/TrEMBL
	ENSRNOT00000098273.1	UniProtKB/TrEMBL
	ENSRNOT00000099140	ENTREZGENE
	ENSRNOT00000099140.1	UniProtKB/TrEMBL
	ENSRNOT00000106964.1	UniProtKB/TrEMBL
	ENSRNOT00000109994	ENTREZGENE
	ENSRNOT00000109994.1	UniProtKB/TrEMBL
	ENSRNOT00000119447.1	UniProtKB/TrEMBL
	ENSRNOT00000119905.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.3860.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro	Na-dicarboxylate_symporter	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Na-dicarboxylate_symporter_CS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Na:dicarbo_symporter_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:29482	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene	29482	ENTREZGENE
Pfam	SDF	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Slc1a2	PhenoGen
PROSITE	NA_DICARBOXYL_SYMP_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	NA_DICARBOXYL_SYMP_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF118215	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A8I6AJ89_RAT	UniProtKB/TrEMBL
	A0A8I6AL04	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AS41_RAT	UniProtKB/TrEMBL
	A0A8I6B5J7_RAT	UniProtKB/TrEMBL
	A0A8I6GIX2_RAT	UniProtKB/TrEMBL
	A0A8I6GKB5_RAT	UniProtKB/TrEMBL
	EAA2_RAT	UniProtKB/Swiss-Prot
	G3V6R0_RAT	UniProtKB/TrEMBL
	P31596	ENTREZGENE
	Q6DUJ4_RAT	UniProtKB/TrEMBL
	Q6DUJ5_RAT	UniProtKB/TrEMBL
	Q8K5B5	ENTREZGENE, UniProtKB/TrEMBL
	Q8R4I5_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-03-09	Slc1a2	solute carrier family 1 member 2	Slc1a2	solute carrier family 1 (glial high affinity glutamate transporter), member 2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2004-09-10	Slc1a2	solute carrier family 1 (glial high affinity glutamate transporter), member 2		solute carrier family 1, member 2	Name updated	1299863	APPROVED
2002-06-10	Slc1a2	solute carrier family 1, member 2			Symbol and Name status set to approved	70586	APPROVED

RGD Curation Notes

Note Type	Note	Reference
gene_disease	significantly decreased in ventral horn of amyotrophic lateral sclerosis patients	70237
gene_disease	loss may lead to cell death in amyotrophic lateral sclerosis	70237
gene_expression	expressed in astrocytes	70237
gene_function	central nervous system glutamate transporter	70237
gene_protein	variant forms GLT1a and GLT1b differ at the C terminal region	619547

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

RGD Manual Annotations

Imported Annotations - KEGG (archival)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

RGD Manual Annotations

Imported Annotations - KEGG (archival)