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Analyze GeneStrainQTL List |
 Gene Annotator (Functional Annotation) unavailable |
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 Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable |
Gene Annotator (Functional Annotation) |
Gene Annotator (Annotation Distribution) |
Variant Visualizer (Genomic Variants) |
 InterViewer (Protein-Protein Interactions) unavailable |
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 Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable |
InterViewer (Protein-Protein Interactions) |
GViewer (Genome Viewer) |
Variant Visualizer (Damaging Variants) |
 Gene Annotator (Annotation Comparison) unavailable |
 OLGA (Gene List Generator) unavailable |
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Gene Annotator (Annotation Comparison) |
OLGA (Gene List Generator) |
Excel (Download) |
 MOET (Multi-Ontology Enrichement) unavailable |
 GOLF (Gene-Ortholog Location Finder) unavailable |
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MOET (Multi-Ontology Enrichement) |
GOLF (Gene-Ortholog Location Finder) |
Imported Annotations - CTD | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| cerebellar ataxia, mental retardation and dysequlibrium syndrome | ISO | RGD:1344629 | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Gene-Chemical Interaction AnnotationsGene Ontology AnnotationsDisease Annotations
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Gene-Chemical Interaction Annotations
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Gene Ontology Annotations
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References - curated| 1. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
| 2. | OMIM Disease Annotation Pipeline |
| 3. | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
| 4. | RGD automated import pipeline for gene-chemical interactions |
| 5. | Xu Q, etal., FEBS Lett. 2012 Jun 21;586(13):1803-12. doi: 10.1016/j.febslet.2012.05.018. Epub 2012 May 26. |
References - uncuratedComparative Map Data| Atp8a2 (Rattus norvegicus - Norway rat) |
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| ATP8A2 (Homo sapiens - human) |
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| Atp8a2 (Mus musculus - house mouse) |
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| ATP8A2 (Pan paniscus - bonobo/pygmy chimpanzee) |
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| ATP8A2 (Canis lupus familiaris - dog) |
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| Atp8a2 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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| LOC100523747 (Sus scrofa - pig) |
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| ATP8A2 (Chlorocebus sabaeus - African green monkey) |
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| Atp8a2 (Heterocephalus glaber - naked mole-rat) |
No map positions available. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Position Markers| D15Got23 |
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| D15Rat87 |
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| RH144321 |
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| BI277866 |
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| BQ210369 |
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QTLs in Region (Rnor_6.0)| The following QTLs overlap with this region. |  | Full Report | | CSV | | TAB | | Printer | | Gviewer |
miRNA Target Status
| The detailed report is available here: | | Full Report | | CSV | | TAB | | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
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RNA-SEQ Expression| alimentary part of gastrointestinal system | circulatory system | endocrine system | exocrine system | hemolymphoid system | hepatobiliary system | integumental system | musculoskeletal system | nervous system | renal system | reproductive system | respiratory system | appendage | |
| High | |||||||||||||
| Medium | 58 | 7 | |||||||||||
| Low | 3 | 26 | 50 | 34 | 18 | 34 | 1 | 1 | 14 | 24 | 20 | 7 | 1 |
| Below cutoff | 14 | 5 | 5 | 1 | 5 | 7 | 8 | 2 | 11 | 14 | 3 | 7 |
Nucleotide Sequences| RefSeq Transcripts | XM_003751492 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| XM_003752815 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_006221968 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_006221970 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_006221972 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_006252160 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_006252164 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_006252165 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_008769169 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_008769177 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_008770789 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_008770790 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017599897 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| GenBank Nucleotide | AABR07018109 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| AABR07018110 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AABR07018111 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AABR07018112 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AABR07018113 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AABR07018114 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AABR07018115 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AABR07072461 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01083240 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01083241 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01083242 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01083243 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01083244 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01083245 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01083246 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01083247 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01083248 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01083249 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01083250 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01083251 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01083252 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01083253 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01083254 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01083255 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01083256 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01083257 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01083258 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AC126002 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| RefSeq Acc Id: | ENSRNOT00000011451 ⟹ ENSRNOP00000011451 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| RefSeq Acc Id: | XM_003751492 ⟹ XP_003751540 | ||||||||||||
| RefSeq Status: | |||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
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| Sequence: |
TTCCGGGCGCCGCCGCATTGGCCGCTGCGGTGCGGGAGGCGCGGTCGGCGCAGCCACGGGGCTGhide sequence |
| RefSeq Acc Id: | XM_003752815 ⟹ XP_003752863 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| Sequence: |
CCGCCTCCTCTTCAGTCTCAGGCAGTCTAAAGCGGTCTTCCTGCACTCGCCCCTGGGCCAACCThide sequence |
| RefSeq Acc Id: | XM_006221968 ⟹ XP_006222030 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| Sequence: |
TGCAGCCATGGTGTAATCCTCCTAGATTATCCCGGGCCAGCCTTAAGCTCTCTAAACACGCAGGhide sequence |
| RefSeq Acc Id: | XM_006221970 ⟹ XP_006222032 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| Sequence: |
CAGGTTCCTGAAAGTGAAGAAAAACCATGGGCTCCAAATAGAAGTCAAAGGAGAGGGGCTTGCAhide sequence |
| RefSeq Acc Id: | XM_006221972 ⟹ XP_006222034 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| Sequence: |
TGGTTTTAACAGCTTCAGAGCAATGATCAACCTAAGCTTTGAGAGCTCTTCCAGCAGCCTGGGAhide sequence |
| RefSeq Acc Id: | XM_006252160 ⟹ XP_006252222 | ||||||||||||
| RefSeq Status: | |||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
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| Sequence: |
TGCAGCCATGGTGTAATCCTCCTAGATTATCCCGGGCCAGCCTTAAGCTCTCTAAACACGCAGGhide sequence |
| RefSeq Acc Id: | XM_006252164 ⟹ XP_006252226 | ||||||||||||
| RefSeq Status: | |||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
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| Sequence: |
TGGTTTTAACAGCTTCAGAGCAATGATCAACCTAAGCTTTGAGAGCTCTTCCAGCAGCCTGGGAhide sequence |
| RefSeq Acc Id: | XM_006252165 ⟹ XP_006252227 | ||||||||||||
| RefSeq Status: | |||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
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| Sequence: |
CCGCCTCCTCTTCAGTCTCAGGCAGTCTAAAGCGGTCTTCCTGCACTCGCCCCTGGGCCAACCThide sequence |
| RefSeq Acc Id: | XM_008769169 ⟹ XP_008767391 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| Sequence: |
TGACTGACTGGCTCAGTTGATTTGAGGCTGGGACAAAGTGACACATGGTGTGGAGTGTGTGGTThide sequence |
| RefSeq Acc Id: | XM_008769177 ⟹ XP_008767399 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| Sequence: |
AGACGAAGTGTGTCCCTTCCCCATGTCCTTGCCCACATTTGTGACTGGTTGGGTTGTTTTCTTGhide sequence |
| RefSeq Acc Id: | XM_008770789 ⟹ XP_008769011 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| Sequence: |
TGACTGACTGGCTCAGTTGATTTGAGGCTGGGACAAAGTGACACATGGTGTGGAGTGTGTGGTThide sequence |
| RefSeq Acc Id: | XM_008770790 ⟹ XP_008769012 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| Sequence: |
AGACGAAGTGTGTCCCTTCCCCATGTCCTTGCCCACATTTGTGACTGGTTGGGTTGTTTTCTTGhide sequence |
| RefSeq Acc Id: | XM_017599897 ⟹ XP_017455386 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| Sequence: |
CAGGTTCCTGAAAGTGAAGAAAAACCATGGGCTCCAAATAGAAGTCAAAGGAGAGGGGCTTGCAhide sequence |
Protein Sequences| Protein RefSeqs | XP_003751540 | (Get FASTA) | NCBI Sequence Viewer |
| XP_003752863 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_006222030 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_006222032 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_006222034 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_006252222 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_006252226 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_006252227 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_008767391 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_008767399 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_008769011 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_008769012 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_017455386 | (Get FASTA) | NCBI Sequence Viewer |
| RefSeq Acc Id: | XP_003751540 ⟸ XM_003751492 |
| - Peptide Label: | isoform X1 |
| - Sequence: |
MLNGAGLDQAFKMSLPRRARIGASVGPVRSSAGYKKAEDEMSRATSVGDQLEAPARIIYLNQSHhide sequence |
| RefSeq Acc Id: | XP_003752863 ⟸ XM_003752815 |
| - Peptide Label: | isoform X4 |
| - Sequence: |
MSRATSVGDQLEAPARIIYLNQSHLNKFCDNRISTAKYSVLTFLPRFLYEQIRRAANAFFLFIAhide sequence |
| RefSeq Acc Id: | XP_006222032 ⟸ XM_006221970 |
| - Peptide Label: | isoform X4 |
| - Sequence: |
MSRATSVGDQLEAPARIIYLNQSHLNKFCDNRISTAKYSVLTFLPRFLYEQIRRAANAFFLFIAhide sequence |
| RefSeq Acc Id: | XP_006222034 ⟸ XM_006221972 |
| - Peptide Label: | isoform X4 |
| - Sequence: |
MSRATSVGDQLEAPARIIYLNQSHLNKFCDNRISTAKYSVLTFLPRFLYEQIRRAANAFFLFIAhide sequence |
| RefSeq Acc Id: | XP_006222030 ⟸ XM_006221968 |
| - Peptide Label: | isoform X3 |
| - Sequence: |
MPHVCRCRRCCSIGPVRSSAGYKKAEDEMSRATSVGDQLEAPARIIYLNQSHLNKFCDNRISTAhide sequence |
| RefSeq Acc Id: | XP_006252226 ⟸ XM_006252164 |
| - Peptide Label: | isoform X4 |
| - Sequence: |
MSRATSVGDQLEAPARIIYLNQSHLNKFCDNRISTAKYSVLTFLPRFLYEQIRRAANAFFLFIAhide sequence |
| RefSeq Acc Id: | XP_006252222 ⟸ XM_006252160 |
| - Peptide Label: | isoform X3 |
| - Sequence: |
MPHVCRCRRCCSIGPVRSSAGYKKAEDEMSRATSVGDQLEAPARIIYLNQSHLNKFCDNRISTAhide sequence |
| RefSeq Acc Id: | XP_006252227 ⟸ XM_006252165 |
| - Peptide Label: | isoform X4 |
| - Sequence: |
MSRATSVGDQLEAPARIIYLNQSHLNKFCDNRISTAKYSVLTFLPRFLYEQIRRAANAFFLFIAhide sequence |
| RefSeq Acc Id: | XP_008767391 ⟸ XM_008769169 |
| - Peptide Label: | isoform X2 |
| - Sequence: |
MIWAVILQLARRVSQKQSDRAEKQGPVRSSAGYKKAEDEMSRATSVGDQLEAPARIIYLNQSHLhide sequence |
| RefSeq Acc Id: | XP_008767399 ⟸ XM_008769177 |
| - Peptide Label: | isoform X4 |
| - Sequence: |
MSRATSVGDQLEAPARIIYLNQSHLNKFCDNRISTAKYSVLTFLPRFLYEQIRRAANAFFLFIAhide sequence |
| RefSeq Acc Id: | XP_008769011 ⟸ XM_008770789 |
| - Peptide Label: | isoform X2 |
| - Sequence: |
MIWAVILQLARRVSQKQSDRAEKQGPVRSSAGYKKAEDEMSRATSVGDQLEAPARIIYLNQSHLhide sequence |
| RefSeq Acc Id: | XP_008769012 ⟸ XM_008770790 |
| - Peptide Label: | isoform X4 |
| - Sequence: |
MSRATSVGDQLEAPARIIYLNQSHLNKFCDNRISTAKYSVLTFLPRFLYEQIRRAANAFFLFIAhide sequence |
| RefSeq Acc Id: | XP_017455386 ⟸ XM_017599897 |
| - Peptide Label: | isoform X4 |
| - Sequence: |
MSRATSVGDQLEAPARIIYLNQSHLNKFCDNRISTAKYSVLTFLPRFLYEQIRRAANAFFLFIAhide sequence |
| RefSeq Acc Id: | ENSRNOP00000011451 ⟸ ENSRNOT00000011451 |
TranscriptomeStrain Sequence Variants (Rnor 6.0)
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Damaging Variants| Chromosome | Start Pos | End Pos | Reference Nucleotide | Variant Nucleotide | Variant Type | Strain |
| 15 | 43977841 | 43977842 | C | T | snv | SDLEF7/Barth (UDEL) |
External Database Links| Database | Acc Id | Source(s) |
| AGR Gene | RGD:1594597 | AgrOrtholog |
| Ensembl Genes | ENSRNOG00000008053 | Ensembl, ENTREZGENE, UniProtKB/TrEMBL |
| Ensembl Protein | ENSRNOP00000011451 | ENTREZGENE, UniProtKB/TrEMBL |
| Ensembl Transcript | ENSRNOT00000011451 | ENTREZGENE, UniProtKB/TrEMBL |
| Gene3D-CATH | 3.40.1110.10 | UniProtKB/TrEMBL |
| 3.40.50.1000 | UniProtKB/TrEMBL | |
| InterPro | ATPase_P-typ_cyto_domN | UniProtKB/TrEMBL |
| ATPase_P-typ_P_site | UniProtKB/TrEMBL | |
| ATPase_P-typ_Plipid-transl | UniProtKB/TrEMBL | |
| ATPase_P-typ_TM_dom | UniProtKB/TrEMBL | |
| ATPase_P-typ_transduc_dom_A | UniProtKB/TrEMBL | |
| Cation_transp_P_typ_ATPase | UniProtKB/TrEMBL | |
| HAD-like_dom | UniProtKB/TrEMBL | |
| HAD-like_sf | UniProtKB/TrEMBL | |
| P-type_ATPase_N | UniProtKB/TrEMBL | |
| P_typ_ATPase_c | UniProtKB/TrEMBL | |
| NCBI Gene | 691889 | ENTREZGENE |
| PANTHER | PTHR24092 | UniProtKB/TrEMBL |
| Pfam | PhoLip_ATPase_C | UniProtKB/TrEMBL |
| PhoLip_ATPase_N | UniProtKB/TrEMBL | |
| PhenoGen | Atp8a2 | PhenoGen |
| PROSITE | ATPASE_E1_E2 | UniProtKB/TrEMBL |
| Superfamily-SCOP | ATPase_cation_domN | UniProtKB/TrEMBL |
| HAD-like_dom | UniProtKB/TrEMBL | |
| SSF81653 | UniProtKB/TrEMBL | |
| SSF81665 | UniProtKB/TrEMBL | |
| TIGRFAMs | ATPase-Plipid | UniProtKB/TrEMBL |
| ATPase_P-type | UniProtKB/TrEMBL | |
| UniProt | D4A3X6_RAT | UniProtKB/TrEMBL |
Nomenclature History| Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
|---|---|---|---|---|---|---|---|
| 2016-02-17 | Atp8a2 | ATPase phospholipid transporting 8A2 | Atp8a2 | ATPase, aminophospholipid transporter, class I, type 8A, member 2 | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
| 2014-09-17 | Atp8a2 | ATPase, aminophospholipid transporter, class I, type 8A, member 2 | LOC691889 | similar to ATPase, aminophospholipid transporter-like, class I, type 8A, member 2 | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
| 2008-01-09 | LOC691889 | similar to ATPase, aminophospholipid transporter-like, class I, type 8A, member 2 | LOC682925 | similar to ATPase, aminophospholipid transporter-like, Class I, type 8A, member 2 | Data Merged | 1643240 | APPROVED |
| 2006-11-20 | LOC691889 | similar to ATPase, aminophospholipid transporter-like, class I, type 8A, member 2 | Symbol and Name status set to provisional | 70820 | PROVISIONAL | ||
| 2006-11-20 | LOC682925 | similar to ATPase, aminophospholipid transporter-like, Class I, type 8A, member 2 | Symbol and Name status set to provisional | 70820 | PROVISIONAL |
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| More on Atp8a2 | |
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Alliance Gene |
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NCBI Gene |
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Ensembl Gene |
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JBrowse: rn5 rn6 |
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NCBI Genome Data Viewer |
| RGD Object Information | |
| RGD ID: | 1594597 |
| Created: | 2006-11-20 |
| Species: | Rattus norvegicus |
| Last Modified: | 2020-03-04 |
| Status: | ACTIVE |
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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.
