Nr2f6 (nuclear receptor subfamily 2, group F, member 6) - Rat Genome Database

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Gene: Nr2f6 (nuclear receptor subfamily 2, group F, member 6) Rattus norvegicus
Analyze
Symbol: Nr2f6
Name: nuclear receptor subfamily 2, group F, member 6
RGD ID: 621685
Description: Enables DNA-binding transcription factor activity and sequence-specific DNA binding activity. Involved in negative regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Orthologous to human NR2F6 (nuclear receptor subfamily 2 group F member 6); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: COUPg; EAR-2; nuclear receptor subfamily 2 group F member 6; orphan nuclear receptor EAR-2; ovalbumin upstream promoter gamma nuclear receptor rCOUPg; V-erbA-related protein 2; V-erbA-related protein EAR-2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21618,046,012 - 18,053,914 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1618,046,013 - 18,053,459 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1618,097,639 - 18,105,087 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01619,230,198 - 19,237,646 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01618,150,560 - 18,158,008 (-)NCBIRnor_WKY
Rnor_6.01619,769,968 - 19,777,414 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1619,769,968 - 19,777,414 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01619,630,090 - 19,637,536 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41618,535,181 - 18,542,627 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11618,535,178 - 18,542,625 (-)NCBI
Celera1618,253,585 - 18,280,658 (-)NCBICelera
Cytogenetic Map16p14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (EXP)
2,6-dinitrotoluene  (EXP)
4,4'-sulfonyldiphenol  (EXP,ISO)
4-hydroxynon-2-enal  (ISO)
4-hydroxyphenyl retinamide  (ISO)
4-tert-Octylphenol  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
ammonium chloride  (EXP)
aristolochic acid A  (ISO)
Aroclor 1254  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
benzene  (EXP)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[e]pyrene  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
butanal  (ISO)
cadmium atom  (ISO)
caffeine  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
clofibrate  (ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
cyclosporin A  (ISO)
decabromodiphenyl ether  (EXP)
diarsenic trioxide  (ISO)
dibutyl phthalate  (EXP)
dichloromethane  (ISO)
diclofenac  (ISO)
diethylstilbestrol  (EXP)
endosulfan  (EXP)
Enterolactone  (ISO)
epoxiconazole  (ISO)
finasteride  (EXP)
folic acid  (ISO)
fulvestrant  (ISO)
gamma-hexachlorocyclohexane  (EXP)
gentamycin  (EXP)
hydrogen peroxide  (ISO)
isoflurane  (ISO)
lead diacetate  (ISO)
methapyrilene  (EXP,ISO)
methylmercury chloride  (ISO)
methylmercury(1+)  (EXP)
nickel dichloride  (EXP)
nickel sulfate  (ISO)
p-tert-Amylphenol  (EXP)
paracetamol  (ISO)
paraquat  (EXP)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (ISO)
pirinixic acid  (ISO)
procymidone  (EXP)
raloxifene  (ISO)
sodium arsenite  (ISO)
tamoxifen  (ISO)
temozolomide  (ISO)
tert-butyl hydroperoxide  (ISO)
tetrachloroethene  (ISO)
tetrachloromethane  (ISO)
thioacetamide  (EXP)
trichloroethene  (EXP)
triptonide  (ISO)
trovafloxacin  (ISO)
urethane  (ISO)
vinclozolin  (EXP)

References

References - curated
# Reference Title Reference Citation
1. The nuclear orphan receptors COUP-TFII and Ear-2 act as silencers of the human oxytocin gene promoter. Chu K and Zingg HH, J Mol Endocrinol. 1997 Oct;19(2):163-72.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
6. GOA pipeline RGD automated data pipeline
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Information Derived from GenBank Report RGD, Sept. 2003
Additional References at PubMed
PMID:10644740   PMID:12477932   PMID:12690040   PMID:15741322   PMID:16721029  


Genomics

Comparative Map Data
Nr2f6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21618,046,012 - 18,053,914 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1618,046,013 - 18,053,459 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1618,097,639 - 18,105,087 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01619,230,198 - 19,237,646 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01618,150,560 - 18,158,008 (-)NCBIRnor_WKY
Rnor_6.01619,769,968 - 19,777,414 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1619,769,968 - 19,777,414 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01619,630,090 - 19,637,536 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41618,535,181 - 18,542,627 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11618,535,178 - 18,542,625 (-)NCBI
Celera1618,253,585 - 18,280,658 (-)NCBICelera
Cytogenetic Map16p14NCBI
NR2F6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381917,231,883 - 17,245,919 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1917,231,883 - 17,245,919 (-)EnsemblGRCh38hg38GRCh38
GRCh371917,342,692 - 17,356,728 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361917,203,694 - 17,217,151 (-)NCBINCBI36Build 36hg18NCBI36
Build 341917,203,693 - 17,217,151NCBI
Celera1917,244,237 - 17,257,694 (-)NCBICelera
Cytogenetic Map19p13.11NCBI
HuRef1916,910,022 - 16,923,473 (-)NCBIHuRef
CHM1_11917,342,241 - 17,355,623 (-)NCBICHM1_1
T2T-CHM13v2.01917,366,766 - 17,380,792 (-)NCBIT2T-CHM13v2.0
Nr2f6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39871,826,762 - 71,834,593 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl871,826,767 - 71,834,604 (-)EnsemblGRCm39 Ensembl
GRCm38871,374,118 - 71,381,967 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl871,374,123 - 71,381,960 (-)EnsemblGRCm38mm10GRCm38
MGSCv37873,898,018 - 73,905,851 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36874,303,114 - 74,310,373 (-)NCBIMGSCv36mm8
Celera873,898,789 - 73,906,622 (-)NCBICelera
Cytogenetic Map8B3.3NCBI
cM Map834.43NCBI
Nr2f6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955524961,232 - 965,012 (+)NCBIChiLan1.0ChiLan1.0
NR2F6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan11921,108,130 - 21,122,705 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01916,719,444 - 16,733,006 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11917,694,149 - 17,707,124 (-)NCBIpanpan1.1PanPan1.1panPan2
NR2F6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12045,490,113 - 45,500,606 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2045,464,356 - 45,500,608 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2045,403,706 - 45,413,888 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02045,976,553 - 45,986,740 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2045,976,771 - 45,986,742 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12045,213,189 - 45,223,360 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02045,623,201 - 45,633,231 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02045,898,871 - 45,909,053 (+)NCBIUU_Cfam_GSD_1.0
Nr2f6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118204,047,581 - 204,057,144 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365963,597,651 - 3,605,836 (+)EnsemblSpeTri2.0
SpeTri2.0NW_0049365963,596,720 - 3,606,283 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NR2F6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl260,426,618 - 60,438,177 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1260,426,116 - 60,438,178 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2260,095,382 - 60,107,896 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NR2F6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1615,728,489 - 15,753,019 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl615,725,021 - 15,753,171 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660743,688,689 - 3,704,484 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nr2f6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624908672,916 - 680,443 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624908673,615 - 680,443 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Nr2f6
13 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:72
Count of miRNA genes:62
Interacting mature miRNAs:68
Transcripts:ENSRNOT00000022898
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1600369Hcas8Hepatocarcinoma susceptibility QTL 8liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)16122477621Rat
631830Alc7Alcohol consumption QTL 72.9consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16126727669Rat
634355Rends4Renal damage susceptibility QTL 40.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)16126727669Rat
1582235Insul8Insulin level QTL 83.30.0063blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)16126727669Rat
9590151Scort8Serum corticosterone level QTL 88.450.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)16130836262Rat
2302380Slep6Serum leptin concentration QTL 63.36blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)16132139025Rat
2307172Activ4Activity QTL 43.710.00023locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)16133418960Rat
1354584Despr6Despair related QTL 63.10.0067locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16139533930Rat
2303566Bw90Body weight QTL 902body mass (VT:0001259)body weight (CMO:0000012)16139533930Rat
631561Hcuc2Hepatic copper content QTL 22.8liver copper amount (VT:0003065)liver total copper weight (CMO:0001507)16139533949Rat
6903319Bw114Body weight QTL 1142.70.0037body mass (VT:0001259)body weight (CMO:0000012)16143534949Rat
7411664Foco30Food consumption QTL 30110.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)16144588133Rat
1354625Despr7Despair related QTL 73.160.016locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16144977551Rat
1600378Arunc4Aerobic running capacity QTL 40.03exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)1638024580345693Rat
2293343Glom16Glomerulus QTL 167.4kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1683223646053497Rat
2312660Bw95Body weight QTL 950.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)1683223659492508Rat
2312663Slep9Serum leptin concentration QTL 90.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1683223659492508Rat
2312666Insul16Insulin level QTL 160.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1683223659492508Rat
2312669Stl23Serum triglyceride level QTL 230.01blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1683223659492508Rat
1300133Rf24Renal function QTL 243.64blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)16338015021361552Rat
2306902Bp339Blood pressure QTL 3390.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16338015043025077Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)16422760943025077Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16422760943025077Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)16422760943025077Rat
737819Hcas4Hepatocarcinoma susceptibility QTL 44.43liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)16422760946975965Rat
61405Niddm6Non-insulin dependent diabetes mellitus QTL 63.660.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)16422760948972724Rat
61338Bp23Blood pressure QTL 234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16422760949227609Rat
737826Alc11Alcohol consumption QTL 113.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16422760960252231Rat
631517Scl9Serum cholesterol level QTL 93.3blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)161572643321034895Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor depth of invasion (CMO:0001888)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor depth of invasion (CMO:0001888)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161769679182635055Rat

Markers in Region
RH132426  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21618,046,128 - 18,046,318 (+)MAPPERmRatBN7.2
Rnor_6.01619,770,084 - 19,770,273NCBIRnor6.0
Rnor_5.01619,630,206 - 19,630,395UniSTSRnor5.0
RGSC_v3.41618,535,297 - 18,535,486UniSTSRGSC3.4
Celera1618,253,701 - 18,253,890UniSTS
RH 3.4 Map16191.3UniSTS
Cytogenetic Map16p14UniSTS
RH135016  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21618,073,078 - 18,074,660 (+)MAPPERmRatBN7.2
Rnor_6.01619,797,034 - 19,798,615NCBIRnor6.0
Rnor_5.01619,657,155 - 19,658,736UniSTSRnor5.0
RGSC_v3.41618,562,247 - 18,563,828UniSTSRGSC3.4
Celera1618,278,658 - 18,280,239UniSTS
RH 3.4 Map16191.7UniSTS
Cytogenetic Map16p14UniSTS
RH140720  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21618,050,408 - 18,050,617 (+)MAPPERmRatBN7.2
Rnor_6.01619,774,364 - 19,774,572NCBIRnor6.0
Rnor_5.01619,634,486 - 19,634,694UniSTSRnor5.0
RGSC_v3.41618,539,577 - 18,539,785UniSTSRGSC3.4
RH 3.4 Map16189.4UniSTS
Cytogenetic Map16p14UniSTS
BM387488  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21618,061,190 - 18,061,369 (+)MAPPERmRatBN7.2
Rnor_6.01619,785,146 - 19,785,324NCBIRnor6.0
Rnor_5.01619,645,267 - 19,645,445UniSTSRnor5.0
RGSC_v3.41618,550,359 - 18,550,537UniSTSRGSC3.4
Celera1618,266,770 - 18,266,948UniSTS
RH 3.4 Map16181.21UniSTS
Cytogenetic Map16p14UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 51 41 13 41 5 7 74 35 34 11 5
Low 6 6 3 4 7 3
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000022898   ⟹   ENSRNOP00000022898
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1618,046,013 - 18,053,459 (-)Ensembl
Rnor_6.0 Ensembl1619,769,968 - 19,777,414 (-)Ensembl
RefSeq Acc Id: NM_139113   ⟹   NP_620813
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21618,046,013 - 18,053,459 (-)NCBI
Rnor_6.01619,769,968 - 19,777,414 (-)NCBI
Rnor_5.01619,630,090 - 19,637,536 (-)NCBI
RGSC_v3.41618,535,181 - 18,542,627 (-)RGD
Celera1618,253,585 - 18,280,658 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039094194   ⟹   XP_038950122
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21618,046,012 - 18,053,914 (-)NCBI
Protein Sequences
Protein RefSeqs NP_620813 (Get FASTA)   NCBI Sequence Viewer  
  XP_038950122 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAB61296 (Get FASTA)   NCBI Sequence Viewer  
  EDL90807 (Get FASTA)   NCBI Sequence Viewer  
  EDL90808 (Get FASTA)   NCBI Sequence Viewer  
  O09017 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_620813   ⟸   NM_139113
- UniProtKB: F1LP04 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000022898   ⟸   ENSRNOT00000022898
RefSeq Acc Id: XP_038950122   ⟸   XM_039094194
- Peptide Label: isoform X1
- UniProtKB: F1LP04 (UniProtKB/TrEMBL)
Protein Domains
NR LBD   Nuclear receptor

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O09017-F1-model_v2 AlphaFold O09017 1-390 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699995
Promoter ID:EPDNEW_R10519
Type:single initiation site
Name:Nr2f6_1
Description:nuclear receptor subfamily 2, group F, member 6
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01619,777,391 - 19,777,451EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621685 AgrOrtholog
BioCyc Gene G2FUF-11856 BioCyc
Ensembl Genes ENSRNOG00000016892 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000022898 ENTREZGENE
  ENSRNOP00000022898.2 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000022898 ENTREZGENE
  ENSRNOT00000022898.4 UniProtKB/TrEMBL
Gene3D-CATH 1.10.565.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.50.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro NHR-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nucl_hrmn_rcpt_lig-bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nuclear_hrmn_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_hrmn_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_NHR/GATA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:245980 UniProtKB/Swiss-Prot
NCBI Gene 245980 ENTREZGENE
PANTHER NUCLEAR HORMONE RECEPTOR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NUCLEAR RECEPTOR SUBFAMILY 2 GROUP F MEMBER 6 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Hormone_recep UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-C4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Nr2f6 PhenoGen
PRINTS COUPTNFACTOR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  STRDHORMONER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  STROIDFINGER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE NR_LBD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NUCLEAR_REC_DBD_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NUCLEAR_REC_DBD_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART HOLI UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZnF_C4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Glucocorticoid receptor-like (DNA-binding domain) UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF48508 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt F1LP04 ENTREZGENE, UniProtKB/TrEMBL
  NR2F6_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-09-10 Nr2f6  nuclear receptor subfamily 2, group F, member 6      Symbol and Name status set to approved 1299863 APPROVED
2002-08-07 Nr2f6  nuclear receptor subfamily 2, group F, member 6      Symbol and Name status set to provisional 70820 PROVISIONAL