 Gene-Chemical Interaction Annotations | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Gene Ontology Annotations |
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Analyze GeneStrainQTL List |
 Gene Annotator (Functional Annotation) unavailable |
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 Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable |
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Variant Visualizer (Genomic Variants) |
 InterViewer (Protein-Protein Interactions) unavailable |
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 Gene Annotator (Annotation Comparison) unavailable |
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Gene Annotator (Annotation Comparison) |
OLGA (Gene List Generator) |
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MOET (Multi-Ontology Enrichement) |
GOLF (Gene-Ortholog Location Finder) |
Gene Ontology AnnotationsDisease Annotations
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Gene-Chemical Interaction Annotations
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Gene Ontology AnnotationsBiological Process
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Cellular Component
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Molecular Function
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References - curated| 1. | Chu K and Zingg HH, J Mol Endocrinol. 1997 Oct;19(2):163-72. |
| 2. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
| 3. | GOA data from the GO Consortium |
| 4. | MGD data from the GO Consortium |
| 5. | NCBI rat LocusLink and RefSeq merged data July 26, 2002 |
| 6. | RGD automated data pipeline |
| 7. | RGD automated import pipeline for gene-chemical interactions |
| 8. | RGD, Sept. 2003 |
References - uncuratedGenomics
Comparative Map Data| Nr2f6 (Rattus norvegicus - Norway rat) |
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| NR2F6 (Homo sapiens - human) |
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| Nr2f6 (Mus musculus - house mouse) |
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| Nr2f6 (Chinchilla lanigera - long-tailed chinchilla) |
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| NR2F6 (Pan paniscus - bonobo/pygmy chimpanzee) |
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| NR2F6 (Canis lupus familiaris - dog) |
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| Nr2f6 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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| NR2F6 (Sus scrofa - pig) |
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| NR2F6 (Chlorocebus sabaeus - African green monkey) |
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| Nr2f6 (Heterocephalus glaber - naked mole-rat) |
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Position Markers| RH132426 |
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| RH135016 |
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| RH140720 |
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| BM387488 |
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QTLs in Region (Rnor_6.0)| The following QTLs overlap with this region. |  | Full Report | | CSV | | TAB | | Printer | | Gviewer |
miRNA Target Status
Predicted Target Of
| The detailed report is available here: | | Full Report | | CSV | | TAB | | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
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Expression
RNA-SEQ ExpressionHigh: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM
| alimentary part of gastrointestinal system | circulatory system | endocrine system | exocrine system | hemolymphoid system | hepatobiliary system | integumental system | musculoskeletal system | nervous system | renal system | reproductive system | respiratory system | appendage | |
| High | |||||||||||||
| Medium | 3 | 43 | 51 | 41 | 13 | 41 | 5 | 7 | 74 | 35 | 34 | 11 | 5 |
| Low | 6 | 6 | 3 | 4 | 7 | 3 | |||||||
| Below cutoff |
View RNA-SEQ Expression Data
Sequence
Nucleotide Sequences| RefSeq Transcripts | NM_139113 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| GenBank Nucleotide | AAHX01086810 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| AAHX01086811 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01189157 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AC125838 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AF003926 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| BC062065 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| CH474031 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
Reference Sequences
| RefSeq Acc Id: | ENSRNOT00000022898 ⟹ ENSRNOP00000022898 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| RefSeq Acc Id: | NM_139113 ⟹ NP_620813 | ||||||||||||||||||||
| RefSeq Status: | PROVISIONAL | ||||||||||||||||||||
| Type: | CODING | ||||||||||||||||||||
| Position: |
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| Sequence: |
GGTTGGCCTGGAACCGGCCCGACCAGTTCCTGCCTGGCGCGCGGACCGGCCGCAGGAAGTTGCChide sequence |
Protein Sequences| Protein RefSeqs | NP_620813 | (Get FASTA) | NCBI Sequence Viewer |
| GenBank Protein | AAB61296 | (Get FASTA) | NCBI Sequence Viewer |
| EDL90807 | (Get FASTA) | NCBI Sequence Viewer | |
| EDL90808 | (Get FASTA) | NCBI Sequence Viewer | |
| O09017 | (Get FASTA) | NCBI Sequence Viewer |
Reference Sequences
| RefSeq Acc Id: | NP_620813 ⟸ NM_139113 |
| - UniProtKB: | O09017 (UniProtKB/Swiss-Prot) |
| - Sequence: |
MAMVTGGWGGPGGDTNGVDKAGGSYPRATEDDSASPPGATSDAEPGDEERPGLQVDCVVCGDKShide sequence |
| RefSeq Acc Id: | ENSRNOP00000022898 ⟸ ENSRNOT00000022898 |
Protein Domains
NR LBD Nuclear receptor
TranscriptomePromoters| RGD ID: | 13699995 | ||||||||
| Promoter ID: | EPDNEW_R10519 | ||||||||
| Type: | single initiation site | ||||||||
| Name: | Nr2f6_1 | ||||||||
| Description: | nuclear receptor subfamily 2, group F, member 6 | ||||||||
| SO ACC ID: | SO:0000170 | ||||||||
| Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
| Experiment Methods: | Single-end sequencing. | ||||||||
| Position: |
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Strain Variation
Strain Sequence Variants (Rnor 6.0)
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Additional Information
External Database Links| Database | Acc Id | Source(s) |
| AGR Gene | RGD:621685 | AgrOrtholog |
| Ensembl Genes | ENSRNOG00000016892 | Ensembl, ENTREZGENE, UniProtKB/TrEMBL |
| Ensembl Protein | ENSRNOP00000022898 | ENTREZGENE, UniProtKB/TrEMBL |
| Ensembl Transcript | ENSRNOT00000022898 | ENTREZGENE, UniProtKB/TrEMBL |
| Gene3D-CATH | 1.10.565.10 | UniProtKB/Swiss-Prot |
| 3.30.50.10 | UniProtKB/Swiss-Prot | |
| InterPro | NHR-like_dom_sf | UniProtKB/Swiss-Prot |
| Nucl_hrmn_rcpt_lig-bd | UniProtKB/Swiss-Prot | |
| Nuclear_hrmn_rcpt | UniProtKB/Swiss-Prot | |
| Znf_hrmn_rcpt | UniProtKB/Swiss-Prot | |
| Znf_NHR/GATA | UniProtKB/Swiss-Prot | |
| KEGG Report | rno:245980 | UniProtKB/Swiss-Prot |
| NCBI Gene | 245980 | ENTREZGENE |
| Pfam | Hormone_recep | UniProtKB/Swiss-Prot |
| zf-C4 | UniProtKB/Swiss-Prot | |
| PhenoGen | Nr2f6 | PhenoGen |
| PRINTS | STRDHORMONER | UniProtKB/Swiss-Prot |
| STROIDFINGER | UniProtKB/Swiss-Prot | |
| PROSITE | NR_LBD | UniProtKB/Swiss-Prot |
| NUCLEAR_REC_DBD_1 | UniProtKB/Swiss-Prot | |
| NUCLEAR_REC_DBD_2 | UniProtKB/Swiss-Prot | |
| SMART | HOLI | UniProtKB/Swiss-Prot |
| ZnF_C4 | UniProtKB/Swiss-Prot | |
| Superfamily-SCOP | SSF48508 | UniProtKB/Swiss-Prot |
| UniGene | Rn.25840 | ENTREZGENE |
| UniProt | F1LP04_RAT | UniProtKB/TrEMBL |
| NR2F6_RAT | UniProtKB/Swiss-Prot, ENTREZGENE |
Nomenclature History| Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
|---|---|---|---|---|---|---|---|
| 2004-09-10 | Nr2f6 | nuclear receptor subfamily 2, group F, member 6 | Symbol and Name status set to approved | 1299863 | APPROVED | ||
| 2002-08-07 | Nr2f6 | nuclear receptor subfamily 2, group F, member 6 | Symbol and Name status set to provisional | 70820 | PROVISIONAL |
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| More on Nr2f6 | |
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Alliance Gene |
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NCBI Gene |
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Ensembl Gene |
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JBrowse: rn5 rn6 |
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NCBI Genome Data Viewer |
| RGD Object Information | |
| RGD ID: | 621685 |
| Created: | 2002-08-06 |
| Species: | Rattus norvegicus |
| Last Modified: | 2020-06-09 |
| Status: | ACTIVE |
