Meis2 (Meis homeobox 2) - Rat Genome Database

Name: Meis2
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Meis2 (Meis homeobox 2) Rattus norvegicus

Analyze

Symbol:

Meis2

Name:

Meis homeobox 2

RGD ID:

1305198

Description:

Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in pancreas development; response to growth factor; and response to mechanical stimulus. Predicted to be located in nucleus. Human ortholog(s) of this gene implicated in cleft palate, cardiac defects, and intellectual disabillity. Orthologous to human MEIS2 (Meis homeobox 2); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; all-trans-retinoic acid.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Also known as:

homeobox protein Meis2; LOC311311; Meis1, myeloid ecotropic viral integration site 1 homolog 2

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	MEIS2 (Meis homeobox 2)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Meis2 (Meis homeobox 2)	RGD	RGD
Chinchilla lanigera (long-tailed chinchilla):	Meis2 (Meis homeobox 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	MEIS2 (Meis homeobox 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	MEIS2 (Meis homeobox 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Meis2 (Meis homeobox 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	MEIS2 (Meis homeobox 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	MEIS2 (Meis homeobox 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Meis2 (Meis homeobox 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	MEIS1 (Meis homeobox 1)	HGNC	OrthoDB
Alliance orthologs ³
Homo sapiens (human):	MEIS2 (Meis homeobox 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Mus musculus (house mouse):	Meis2 (Meis homeobox 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Danio rerio (zebrafish):	meis2b (Meis homeobox 2b)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Saccharomyces cerevisiae (baker's yeast):	CUP9	Alliance	DIOPT (OrthoFinder\|OrthoInspector\|PANTHER)
Drosophila melanogaster (fruit fly):	hth	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Caenorhabditis elegans (roundworm):	unc-62	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Saccharomyces cerevisiae (baker's yeast):	TOS8	Alliance	DIOPT (OrthoFinder\|OrthoInspector\|PANTHER)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	3	102,742,905 - 102,944,833 (-)	NCBI	mRatBN7.2
mRatBN7.2 Ensembl	3	102,742,900 - 102,949,696 (-)	Ensembl
Rnor_6.0	3	107,560,172 - 107,762,732 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	107,559,997 - 107,760,589 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	114,124,722 - 114,327,367 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	101,915,966 - 102,117,215 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	3	101,812,373 - 102,015,498 (-)	NCBI
Celera	3	101,688,008 - 101,887,707 (-)	NCBI		Celera
Cytogenetic Map	3	q35	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Bloom syndrome (ISO)

cleft palate, cardiac defects, and intellectual disabillity (ISO)

colon cancer (ISO)

genetic disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

1,1-dichloroethene (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (EXP,ISO)

17beta-estradiol (ISO)

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-methylcholine (ISO)

4-hydroxyphenyl retinamide (ISO)

8'-apo-beta,psi-caroten-8'-al (ISO)

9-cis-retinoic acid (ISO)

aldrin (ISO)

all-trans-4-oxoretinoic acid (ISO)

all-trans-4-oxoretinol (ISO)

all-trans-retinoic acid (EXP,ISO)

all-trans-retinol (ISO)

antirheumatic drug (ISO)

aristolochic acid (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

atrazine (EXP)

benzo[a]pyrene (EXP,ISO)

benzo[a]pyrene diol epoxide I (ISO)

Benzo[k]fluoranthene (ISO)

beta-carotene (ISO)

bisphenol A (EXP,ISO)

captan (ISO)

carbon nanotube (ISO)

chlorpyrifos (EXP)

cisplatin (ISO)

copper atom (EXP)

copper(0) (EXP)

copper(II) sulfate (ISO)

Cuprizon (EXP)

cyclosporin A (ISO)

disodium selenite (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

endosulfan (EXP)

ethanol (ISO)

fluoranthene (ISO)

folic acid (ISO)

folpet (ISO)

leflunomide (ISO)

lenalidomide (ISO)

methylmercury chloride (ISO)

nickel atom (ISO)

nickel sulfate (ISO)

nitrogen dioxide (ISO)

panobinostat (ISO)

paracetamol (EXP,ISO)

phenobarbital (ISO)

phenylmercury acetate (ISO)

pirinixic acid (ISO)

piroxicam (ISO)

pomalidomide (ISO)

potassium chromate (ISO)

Ptaquiloside (ISO)

quercetin (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

sodium arsenate (ISO)

sodium fluoride (ISO)

sunitinib (ISO)

thalidomide (ISO)

titanium dioxide (ISO)

trichostatin A (ISO)

trimellitic anhydride (ISO)

triptonide (ISO)

troglitazone (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

animal organ morphogenesis (IBA)

brain development (IBA)

embryonic pattern specification (IBA)

eye development (IBA,ISO)

negative regulation of myeloid cell differentiation (ISO)

pancreas development (IEP)

positive regulation of cardiac muscle myoblast proliferation (ISO)

positive regulation of cell population proliferation (IBA)

positive regulation of mitotic cell cycle (ISO)

positive regulation of transcription by RNA polymerase II (IBA,ISO)

regulation of transcription by RNA polymerase II (IBA)

response to growth factor (IEP)

response to mechanical stimulus (IEP)

visual learning (ISO)

Cellular Component

cellular_component (ND)

nucleus (ISO)

Molecular Function

DNA binding (ISO)

DNA-binding transcription activator activity, RNA polymerase II-specific (IBA,ISO)

DNA-binding transcription factor activity, RNA polymerase II-specific (IBA)

molecular_function (ND)

protein binding (ISO)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IBA,ISO)

sequence-specific DNA binding (ISO)

sequence-specific double-stranded DNA binding (ISO)

References

References - curated


1.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Gustafsson E, etal., Eur J Neurosci. 2003 Jun;17(12):2667-78.
3.	MGD data from the GO Consortium
4.	Peters K, etal., Virchows Arch. 2005 Jan;446(1):56-63. Epub 2004 Nov 30.
5.	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6.	RGD automated import pipeline for gene-chemical interactions
7.	RGD comprehensive gene curation

Additional References at PubMed

PMID:10764806	PMID:10842069	PMID:11279116	PMID:11358480	PMID:11438208	PMID:12183364	PMID:15465489	PMID:15617687	PMID:17049510	PMID:17178831	PMID:18787068	PMID:25834037
PMID:26512644	PMID:26550823

Genomics

Comparative Map Data

Meis2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	3	102,742,905 - 102,944,833 (-)	NCBI	mRatBN7.2
mRatBN7.2 Ensembl	3	102,742,900 - 102,949,696 (-)	Ensembl
Rnor_6.0	3	107,560,172 - 107,762,732 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	107,559,997 - 107,760,589 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	114,124,722 - 114,327,367 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	101,915,966 - 102,117,215 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	3	101,812,373 - 102,015,498 (-)	NCBI
Celera	3	101,688,008 - 101,887,707 (-)	NCBI		Celera
Cytogenetic Map	3	q35	NCBI

MEIS2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	15	36,889,204 - 37,101,299 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	15	36,889,204 - 37,101,311 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	15	37,181,405 - 37,393,512 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	15	34,970,524 - 35,180,792 (-)	NCBI	NCBI36		hg18	NCBI36
Celera	15	13,943,263 - 14,153,527 (-)	NCBI
Cytogenetic Map	15	q14	NCBI
HuRef	15	14,029,111 - 14,239,280 (-)	NCBI		HuRef
CHM1_1	15	37,301,775 - 37,511,985 (-)	NCBI		CHM1_1

Meis2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	115,691,745 - 115,897,925 (-)	NCBI	GRCm39		mm39
GRCm39 Ensembl	2	115,693,545 - 115,896,320 (-)	Ensembl
GRCm38	2	115,861,264 - 116,067,537 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	115,863,064 - 116,065,839 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	115,687,000 - 115,890,794 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	2	115,554,510 - 115,756,553 (-)	NCBI			mm8
Celera	2	117,003,666 - 117,210,747 (-)	NCBI		Celera
Cytogenetic Map	2	E4- E5	NCBI
cM Map	2	58.28	NCBI

Meis2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955416	4,101,977 - 4,311,791 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955416	4,104,114 - 4,311,791 (-)	NCBI	ChiLan1.0	ChiLan1.0

MEIS2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	15	34,072,665 - 34,283,411 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	15	34,072,665 - 34,282,477 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	15	15,814,739 - 16,025,512 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

MEIS2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	30	4,422,451 - 4,627,277 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	30	4,422,440 - 4,741,335 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	30	4,476,676 - 4,681,235 (-)	NCBI
ROS_Cfam_1.0	30	4,544,212 - 4,749,027 (-)	NCBI
ROS_Cfam_1.0 Ensembl	30	4,544,217 - 4,749,667 (-)	Ensembl
UMICH_Zoey_3.1	30	4,471,642 - 4,676,294 (-)	NCBI
UNSW_CanFamBas_1.0	30	4,569,335 - 4,774,290 (-)	NCBI
UU_Cfam_GSD_1.0	30	4,703,783 - 4,908,705 (-)	NCBI

Meis2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	82,952,452 - 83,157,991 (-)	NCBI
SpeTri2.0	NW_004936471	800,510 - 1,006,054 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

MEIS2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	134,013,820 - 134,223,012 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	134,013,642 - 134,223,013 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	149,911,450 - 149,974,264 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

MEIS2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	26	45,844,214 - 46,054,325 (+)	NCBI	ChlSab1.1		chlSab2
Vero_WHO_p1.0	NW_023666048	94,869,693 - 95,081,805 (-)	NCBI	Vero_WHO_p1.0

Meis2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624804	4,210,765 - 4,413,284 (-)	NCBI	HetGla_female_1.0		hetGla2

Position Markers

D3Rat204

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	102,761,177 - 102,761,440 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	107,578,444 - 107,578,706	NCBI	Rnor6.0
Rnor_5.0	3	114,142,994 - 114,143,256	UniSTS	Rnor5.0
RGSC_v3.4	3	101,934,370 - 101,934,633	RGD	RGSC3.4
RGSC_v3.4	3	101,934,371 - 101,934,633	UniSTS	RGSC3.4
RGSC_v3.1	3	101,830,703 - 101,831,085	RGD
Celera	3	101,706,233 - 101,706,473	UniSTS
FHH x ACI Map	3	58.3499	UniSTS
FHH x ACI Map	3	58.3499	RGD
Cytogenetic Map	3	q35	UniSTS

D3Got228

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	102,816,420 - 102,816,636 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	107,633,685 - 107,633,904	NCBI	Rnor6.0
Rnor_5.0	3	114,198,235 - 114,198,454	UniSTS	Rnor5.0
RGSC_v3.4	3	101,989,612 - 101,989,831	UniSTS	RGSC3.4
Celera	3	101,761,392 - 101,761,599	UniSTS
Cytogenetic Map	3	q35	UniSTS

WI-18493

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	102,746,300 - 102,746,427 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	107,563,568 - 107,563,694	NCBI	Rnor6.0
Rnor_5.0	3	114,128,118 - 114,128,244	UniSTS	Rnor5.0
RGSC_v3.4	3	101,919,337 - 101,919,463	UniSTS	RGSC3.4
Celera	3	101,691,381 - 101,691,507	UniSTS
Cytogenetic Map	3	q35	UniSTS

BF419355

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	102,880,339 - 102,880,554 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	107,697,493 - 107,697,707	NCBI	Rnor6.0
Rnor_5.0	3	114,262,043 - 114,262,257	UniSTS	Rnor5.0
RGSC_v3.4	3	102,054,275 - 102,054,489	UniSTS	RGSC3.4
Celera	3	101,824,595 - 101,824,809	UniSTS
RH 3.4 Map	3	787.9	UniSTS
Cytogenetic Map	3	q35	UniSTS

BF396365

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	102,932,338 - 102,932,478 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	107,382,487 - 107,382,626	NCBI	Rnor6.0
Rnor_6.0	3	107,749,428 - 107,749,567	NCBI	Rnor6.0
Rnor_5.0	3	114,313,763 - 114,313,902	UniSTS	Rnor5.0
Rnor_5.0	3	113,948,629 - 113,948,768	UniSTS	Rnor5.0
RGSC_v3.4	3	102,106,052 - 102,106,191	UniSTS	RGSC3.4
Celera	3	101,876,568 - 101,876,707	UniSTS
RH 3.4 Map	3	790.6	UniSTS
Cytogenetic Map	3	q35	UniSTS

RH132496

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	102,944,807 - 102,945,011 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	107,761,886 - 107,762,089	NCBI	Rnor6.0
Rnor_5.0	3	114,326,201 - 114,326,404	UniSTS	Rnor5.0
RGSC_v3.4	3	102,118,851 - 102,119,054	UniSTS	RGSC3.4
Celera	3	101,889,063 - 101,889,266	UniSTS
RH 3.4 Map	3	791.1	UniSTS
Cytogenetic Map	3	q35	UniSTS

BE097664

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	102,755,593 - 102,755,745 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	107,572,861 - 107,573,012	NCBI	Rnor6.0
Rnor_5.0	3	114,137,411 - 114,137,562	UniSTS	Rnor5.0
RGSC_v3.4	3	101,928,630 - 101,928,781	UniSTS	RGSC3.4
Celera	3	101,700,650 - 101,700,801	UniSTS
RH 3.4 Map	3	796.7	UniSTS
Cytogenetic Map	3	q35	UniSTS

BF395876

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	102,754,777 - 102,755,001 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	107,572,045 - 107,572,268	NCBI	Rnor6.0
Rnor_5.0	3	114,136,595 - 114,136,818	UniSTS	Rnor5.0
RGSC_v3.4	3	101,927,814 - 101,928,037	UniSTS	RGSC3.4
Celera	3	101,699,834 - 101,700,057	UniSTS
RH 3.4 Map	3	796.0	UniSTS
Cytogenetic Map	3	q35	UniSTS

RH138147

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	102,900,624 - 102,900,812 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	107,718,033 - 107,718,220	NCBI	Rnor6.0
Rnor_5.0	3	114,282,368 - 114,282,555	UniSTS	Rnor5.0
RGSC_v3.4	3	102,074,336 - 102,074,523	UniSTS	RGSC3.4
Celera	3	101,844,868 - 101,845,055	UniSTS
RH 3.4 Map	3	788.3	UniSTS
Cytogenetic Map	3	q35	UniSTS

AU048515

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	102,937,955 - 102,938,118 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	107,755,041 - 107,755,203	NCBI	Rnor6.0
Rnor_5.0	3	114,319,376 - 114,319,538	UniSTS	Rnor5.0
RGSC_v3.4	3	102,111,665 - 102,111,827	UniSTS	RGSC3.4
Cytogenetic Map	3	q35	UniSTS

UniSTS:234491

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	102,743,571 - 102,743,724 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	107,560,839 - 107,560,991	NCBI	Rnor6.0
Rnor_5.0	3	114,125,389 - 114,125,541	UniSTS	Rnor5.0
RGSC_v3.4	3	101,916,608 - 101,916,760	UniSTS	RGSC3.4
Celera	3	101,688,652 - 101,688,804	UniSTS
Cytogenetic Map	3	q35	UniSTS

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1358885	Bp251	Blood pressure QTL 251	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	14489145	121056321	Rat
1358888	Bp264	Blood pressure QTL 264	4.43		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	14489145	121056321	Rat
737818	Hcar12	Hepatocarcinoma resistance QTL 12	2.6		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	3	29463235	118376539	Rat
70216	Cm14	Cardiac mass QTL 14	2.1		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	31172320	163586636	Rat
1354604	Bw36	Body weight QTL 36	2.9		body mass (VT:0001259)	body weight (CMO:0000012)	3	33703347	104104347	Rat
1358362	Srcrt2	Stress Responsive Cort QTL 2	2.78		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	38192233	133483320	Rat
1354597	Kidm13	Kidney mass QTL 13	2.9		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	3	41874578	104104347	Rat
2301970	Bw81	Body weight QTL 81	5.19		body mass (VT:0001259)	body weight (CMO:0000012)	3	41874578	155617519	Rat
2301971	Cm71	Cardiac mass QTL 71	4.63		heart left ventricle mass (VT:0007031)	heart left ventricle weight (CMO:0000776)	3	41874578	155617519	Rat
1581503	Cm58	Cardiac mass QTL 58	2.7	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	43827364	121056321	Rat
1559282	Emca5	Estrogen-induced mammary cancer QTL 5	3.9		mammary gland integrity trait (VT:0010552)	percentage of study population developing mammary tumors during a period of time (CMO:0000948)	3	43827364	169034231	Rat
2292591	Esta4	Estrogen-induced thymic atrophy QTL 4			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	3	47233211	147415807	Rat
1358186	Ept2	Estrogen-induced pituitary tumorigenesis QTL 2	8.3		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	47233430	110362260	Rat
2292613	Ept16	Estrogen-induced pituitary tumorigenesis QTL 16	8.3		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	47233430	110362260	Rat
631665	Bw8	Body weight QTL 8	5.5		body mass (VT:0001259)	body weight (CMO:0000012)	3	50437042	119183768	Rat
724523	Tsu1	Thymus enlargement suppressive QTL 1	3.84		thymus mass (VT:0004954)	thymus weight to body weight ratio (CMO:0000612)	3	50437504	115638231	Rat
1582218	Bw74	Body weight QTL 74	3.9	0.0021	body mass (VT:0001259)	body weight (CMO:0000012)	3	53184593	115665732	Rat
1582238	Bw68	Body weight QTL 68	3.2	0.0064	body mass (VT:0001259)	body weight (CMO:0000012)	3	53184593	115665732	Rat
1582239	Epfw1	Epididymal fat weight QTL 1	4.5	0.0006	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	3	53184593	115665732	Rat
1581568	Rf53	Renal function QTL 53			total urine protein amount (VT:0000032)	urine protein excretion rate to body weight ratio (CMO:0001099)	3	56395968	161299569	Rat
8662816	Vetf4	Vascular elastic tissue fragility QTL 4	4		renal artery integrity trait (VT:0010642)	number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)	3	59242096	157323038	Rat
1300111	Rf12	Renal function QTL 12	3.78		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	3	61017749	121056321	Rat
1582210	Bw71	Body weight QTL 71	3.3	0.0012	body mass (VT:0001259)	body weight (CMO:0000012)	3	64655305	115665732	Rat
1582221	Kidm30	Kidney mass QTL 30	3.5	0.0008	kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	3	64655305	115665732	Rat
12879848	Bw181	Body weght QTL 181		0.015	body mass (VT:0001259)	body weight (CMO:0000012)	3	70348525	121056321	Rat
2301414	Kidm37	Kidney mass QTL 37		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	70653097	121056321	Rat
1600376	Arunc5	Aerobic running capacity QTL 5		0.21	exercise endurance trait (VT:0002332)	maximum distance run on treadmill (CMO:0001406)	3	73376539	118376539	Rat
1581546	Pur13	Proteinuria QTL 13	2.93	0.0335	total urine protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	3	78196190	146592722	Rat
2302273	Gluco35	Glucose level QTL 35	5.3	0.001	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	80800231	114297550	Rat
631649	Bp123	Blood pressure QTL 123	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	89772419	134772419	Rat
8694437	Bw167	Body weight QTL 167	22.46	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	3	91797474	136797474	Rat
631841	Niddm39	Non-insulin dependent diabetes mellitus QTL 39	3.36		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	94856903	159898684	Rat
724532	Cm17	Cardiac mass QTL 17	2		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	3	95735366	140735366	Rat
1582219	Bw63	Body weight QTL 63	3.8	0.001	body mass (VT:0001259)	body weight (CMO:0000012)	3	96127817	115665732	Rat
1354611	Despr2	Despair related QTL 2	3.03	0.0028	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	3	97084464	142084464	Rat
2293087	Iddm27	Insulin dependent diabetes mellitus QTL 27	2.68		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	97551417	147415807	Rat
2312659	Slep7	Serum leptin concentration QTL 7		0.001	blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	3	98535255	168026850	Rat
2312670	Bw94	Body weight QTL 94		0.01	inguinal fat pad mass (VT:0010424)	inguinal fat pad weight to body weight ratio (CMO:0001253)	3	98535255	168026850	Rat
2312673	Scl63	Serum cholesterol level QTL 63		0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	3	98535255	168026850	Rat
2302373	Gluco39	Glucose level QTL 39	5.01		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	3	98535386	161695835	Rat
1582216	Bw65	Body weight QTL 65	6.3		body mass (VT:0001259)	body weight (CMO:0000012)	3	102200529	115665732	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	97
Count of miRNA genes:	84
Interacting mature miRNAs:	89
Transcripts:	ENSRNOT00000051638
Prediction methods:	Miranda
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium		33	15	6	1	6			70	33	29	9
Low	3	10	42	35	18	35	8	9	4	2	7	2	8
Below cutoff								2			5

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001107758	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234743	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234744	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234745	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234746	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234747	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234748	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234749	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234750	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234751	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234752	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234753	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234754	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234755	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039104936	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039104937	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473949	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000118	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000051638 ⟹ ENSRNOP00000047254

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	102,742,930 - 102,949,696 (-)	Ensembl
Rnor_6.0 Ensembl	3	107,560,197 - 107,760,589 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000077091 ⟹ ENSRNOP00000068546

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	102,742,900 - 102,942,351 (-)	Ensembl
Rnor_6.0 Ensembl	3	107,559,997 - 107,760,550 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000098248 ⟹ ENSRNOP00000093627

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	102,742,900 - 102,949,696 (-)	Ensembl

RefSeq Acc Id:

NM_001107758 ⟹ NP_001101228

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	102,742,930 - 102,943,497 (-)	NCBI
Rnor_6.0	3	107,560,197 - 107,760,589 (-)	NCBI
Rnor_5.0	3	114,124,722 - 114,327,367 (-)	NCBI
RGSC_v3.4	3	101,915,966 - 102,117,215 (-)	RGD
Celera	3	101,688,008 - 101,887,707 (-)	RGD

Sequence:

show sequence

AAGATCAGGAGGAGGAGGAGGAAGAAGAGAAAAAAAGAGAAAAAGAAGAAATATCACTGAAAAA
AAATCTTCGTTTTCTTGACTGGGCTTTCCCCACCCCCCTAAAAATAACATTGGAAAATTGGGAG
AAGTCTCCTTGGTTTGGAGAATAAGGACTCTTCAACCTAGCTCACTTTCTTATCCGGACTGGGA
TATTAAATATACGACACATCCAGGAGTTTATTGGAGCGCAGACTGATGGCGCAAAGGTACGATG
AGCTGCCCCATTACGGCGGGATGGACGGAGTAGGGGTTCCTGCTTCCATGTACGGAGACCCTCA
CGCGCCGCGGCCGATTCCCCCGGTTCACCACCTAAACCACGGGCCGCCGCTCCACGCCACGCAG
CACTACGGCGCGCACGCCCCGCACCCCAATGTCATGCCAGCCAGCATGGGATCTGCTGTCAACG
ACGCCTTGAAGAGAGACAAGGACGCGATCTACGGGCACCCGTTGTTTCCTCTGTTAGCGCTGGT
CTTTGAGAAGTGCGAGCTGGCGACTTGCACTCCCCGGGAACCCGGAGTGGCCGGCGGAGACGTC
TGTTCCTCTGACTCCTTCAACGAGGACATCGCGGTCTTCGCCAAGCAGGTTCGCGCCGAAAAGC
CTCTTTTTTCCTCAAATCCAGAGCTGGATAATTTGATGATACAAGCAATACAAGTGCTAAGGTT
TCATCTTCTGGAGTTAGAAAAGGTCCACGAACTGTGTGATAACTTCTGCCACCGGTACATTAGC
TGTTTGAAGGGGAAAATGCCCATTGACCTCGTGATTGATGAGAGAGACGGAAGCTCCAAGTCAG
ATCATGAAGAACTTTCAGGCTCCTCCACAAATCTCGCCGACCACAACCCTTCATCCTGGCGAGA
CCACGATGATGCAACCTCAACTCACTCAGCAGGCACCCCAGGACCCTCCAGCGGGGGCCATGCT
TCCCAGAGTGGAGACAACAGCAGTGAGCAAGGCGACGGGCTAGACAACAGTGTAGCTTCACCTG
GCACAGGTGATGACGACGATCCAGACAAGGACAAAAAACGCCAGAAGAAAAGAGGCATATTCCC
CAAAGTCGCGACAAATATCATGAGAGCGTGGCTCTTCCAGCATCTCACACACCCGTACCCTTCA
GAAGAGCAGAAGAAGCAGTTAGCACAAGACACGGGGCTGACAATTCTGCAAGTGAACAACTGGT
TTATTAATGCCAGAAGAAGAATAGTACAGCCCATGATTGACCAGTCAAATCGAGCAGGCAACCA
AGGAGCAGCGTATAGTCCAGAGGGTCAGCCTATGGGGAGCTTTGTATTGGATGGTCAGCAACAC
ATGGGGATCCGGCCCGCAGGTTTGCAGAGCATGCCAGGGGACTACGTTTCTCAGGGTGGTCCAG
TGGGAATGGGTATGGCCCAGCCGAGTTACACTCCTCCCCAGATGACCCCACACCCTACTCAGTT
AAGACATGGACCCCCAATGCATTCATATTTGCCAAGCCATCCCCACCACCCAGCCATGATGATG
CACGGAGGACCCCCTACCCACCCTGGAATGACTATGTCAGCACAGAGCCCCACAATGTTAAATT
CTGTAGATCCCAATGTTGGCGGACAGGTTATGGACATTCATGCCCAATAGTATAAGGGAACTCA
AGGAAGAAGGAAACACACGCAAAAACTATTGACTAAGACTCTCCGAACTTTGACCAGATGTGAC
ACTTAATATGAAACTCCAGACAGCTGTGATTATTTTTTACTTTTGTCATTTTTCATCAAGCAAC
AGAGGACCAATGGGACAAGAACACAAATGTGAAGCGATGGGGGTCATCGAGACAATTTTGTCCA
TGCAAAGATCCTCTGGAGAAAGACTCCGAGAGTTATAACTACTGTAGCATAAACATAGGGACTA
AGTTAAACTTGTACATTTCTGTTGATCACTCCGTTATGTTGCCTCAAATAGTTTTAGAAGAGAA
AAAAATATATCCTTGTTTTCCACACTATGTGTGTTGTTCCCAAAAGAATGACTGTCTTGGTTCA
TCAGTGAATTCACTATCCAGAAGAGAACTGTGGTATATTTTAAATCTGTTGGGCCAATGAGAAA
AGAACCACGCTGCGGAGAGAGATGGACACTTGGCTGAACCTCATCACTAACTCCAGCGGCTAGA
ATGTGTTTTCATGCCCGGCCTTTGTTCCCCCGTCCGTGTGTCCTTTAGTTTCAAACAGATCTTT
ATAGTTTGTGCTTCATAAGCCAATTCTTATTATGATTTTGGGGGACTGTTCTTCAAAGAGCTTG
CCAGTGAAGATTTAGAGACAAAGCGAAGACTTCTTCAAGTCCCAAGCCTTGGCTATGGACAAAG
CAATCTTAAGTTGGACAGCTTCCTCAACACGCGCACATGTGTGCGCGAGCGCACACACACACAC
ACACACACACACACACACACACACACACAGAAATTATTCATGGTCATTGCACCATAAGATTCTA
TCAGGAACTCAAAGCTTGGGGGATAAAACGGAGCAAGAGAATACTGTAACAAACTTCGTACAGA
GTTCGGTCTTTTAATTGTTTCATGTTAGATATTCTATGTGTTTACCTCAATTGAAAAAAAAAAA
GAATGTTTTTGCTAGTATCAGATCTGCTGTGGAATTGGTATTGTATGTCCATGGGATCCTCTTT
TCTCAGCACGTGTTCCTCACTAGAAGAAAATGCTGTTACCTTTAAGCTTTGTCAAATTTACATT
AAAATACTTGTATGAGGACTGTGACGTTATGTTAAAAAAAGGTGTTAAGTCACAAAATGCGGT

hide sequence

RefSeq Acc Id:

XM_006234746 ⟹ XP_006234808

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	102,742,905 - 102,944,833 (-)	NCBI
Rnor_6.0	3	107,560,172 - 107,762,225 (-)	NCBI
Rnor_5.0	3	114,124,722 - 114,327,367 (-)	NCBI

Sequence:

show sequence

AGCAAACAACTCCCCCTCCGATAACTCCTACCGCACTAACTCCCACCTTACTAACTCTCATCCT
GCTTTCTCCCTCCAGATTGCGCCCAGGACCCCTAGACTCTCCACGGTGGCCCACCCTGTCTGCA
GCGCACCGGGGGACTATGCTCGGAGTTCAGCTGCCCACATCTTGTACTAGAAAAAAATGAATAT
TGACAACAAGGGCTCTGCATCTGCACAAGAAAGAAAGTACCACTTAACAACAACAAAATATCCT
GGCCCGGCGATGGTGCAGTCGGCGGTGCTCGCTGCTCTAGGTTGTTAGCGGCAGAGTTCCGGAC
CTAGTAATCCGCCAGCAGAGGAAGGGGGCCGCGGAATTAAAACGAACAAAAGCTAGAGCGCCAT
GCCAAACATCCCCAACGCGACCCAGTTAGGCAGGAGCCAAGAGGAGTGGTGGGGAAATAAACGA
GAATACGATGAGCTGCCCCATTACGGCGGGATGGACGGAGTAGGGGTTCCTGCTTCCATGTACG
GAGACCCTCACGCGCCGCGGCCGATTCCCCCGGTTCACCACCTAAACCACGGGCCGCCGCTCCA
CGCCACGCAGCACTACGGCGCGCACGCCCCGCACCCCAATGTCATGCCAGCCAGCATGGGATCT
GCTGTCAACGACGCCTTGAAGAGAGACAAGGACGCGATCTACGGGCACCCGTTGTTTCCTCTGT
TAGCGCTGGTCTTTGAGAAGTGCGAGCTGGCGACTTGCACTCCCCGGGAACCCGGAGTGGCCGG
CGGAGACGTCTGTTCCTCTGACTCCTTCAACGAGGACATCGCGGTCTTCGCCAAGCAGGTTCGC
GCCGAAAAGCCTCTTTTTTCCTCAAATCCAGAGCTGGATAATTTGATGATACAAGCAATACAAG
TGCTAAGGTTTCATCTTCTGGAGTTAGAAAAGGTCCACGAACTGTGTGATAACTTCTGCCACCG
GTACATTAGCTGTTTGAAGGGGAAAATGCCCATTGACCTCGTGATTGATGAGAGAGACGGAAGC
TCCAAGTCAGATCATGAAGAACTTTCAGGCTCCTCCACAAATCTCGCCGACCACAACCCTTCAT
CCTGGCGAGACCACGATGATGCAACCTCAACTCACTCAGCAGGCACCCCAGGACCCTCCAGCGG
GGGCCATGCTTCCCAGAGTGGAGACAACAGCAGTGAGCAAGGCGACGGGCTAGACAACAGTGTA
GCTTCACCTGGCACAGGTGATGACGACGATCCAGACAAGGACAAAAAACGCCAGAAGAAAAGAG
GCATATTCCCCAAAGTCGCGACAAATATCATGAGAGCGTGGCTCTTCCAGCATCTCACACACCC
GTACCCTTCAGAAGAGCAGAAGAAGCAGTTAGCACAAGACACGGGGCTGACAATTCTGCAAGTG
AACAACTGGTTTATTAATGCCAGAAGAAGAATAGTACAGCCCATGATTGACCAGTCAAATCGAG
CAGTGAGCCAAGGAGCAGCGTATAGTCCAGAGGGTCAGCCTATGGGGAGCTTTGTATTGGATGG
TCAGCAACACATGGGGATCCGGCCCGCAGGTTTGCAGAGCATGCCAGGGGACTACGTTTCTCAG
GGTGGTCCAGTGGGAATGGGTATGGCCCAGCCGAGTTACACTCCTCCCCAGATGACCCCACACC
CTACTCAGTTAAGACATGGACCCCCAATGCATTCATATTTGCCAAGCCATCCCCACCACCCAGC
CATGATGATGCACGGAGGACCCCCTACCCACCCTGGAATGACTATGTCAGCACAGAGCCCCACA
ATGTTAAATTCTGTAGATCCCAATGTTGGCGGACAGGTTATGGACATTCATGCCCAATAGTATA
AGGGAACTCAAGGAAGAAGGAAACACACGCAAAAACTATTGACTAAGACTCTCCGAACTTTGAC
CAGATGTGACACTTAATATGAAACTCCAGACAGCTGTGATTATTTTTTACTTTTGTCATTTTTC
ATCAAGCAACAGAGGACCAATGGGACAAGAACACAAATGTGAAGCGATGGGGGTCATCGAGACA
ATTTTGTCCATGCAAAGATCCTCTGGAGAAAGACTCCGAGAGTTATAACTACTGTAGCATAAAC
ATAGGGACTAAGTTAAACTTGTACATTTCTGTTGATCACTCCGTTATGTTGCCTCAAATAGTTT
TAGAAGAGAAAAAAATATATCCTTGTTTTCCACACTATGTGTGTTGTTCCCAAAAGAATGACTG
TCTTGGTTCATCAGTGAATTCACTATCCAGAAGAGAACTGTGGTATATTTTAAATCTGTTGGGC
CAATGAGAAAAGAACCACGCTGCGGAGAGAGATGGACACTTGGCTGAACCTCATCACTAACTCC
AGCGGCTAGAATGTGTTTTCATGCCCGGCCTTTGTTCCCCCGTCCGTGTGTCCTTTAGTTTCAA
ACAGATCTTTATAGTTTGTGCTTCATAAGCCAATTCTTATTATGATTTTGGGGGACTGTTCTTC
AAAGAGCTTGCCAGTGAAGATTTAGAGACAAAGCGAAGACTTCTTCAAGTCCCAAGCCTTGGCT
ATGGACAAAGCAATCTTAAGTTGGACAGCTTCCTCAACACGCGCACATGTGTGCGCGAGCGCAC
ACACACACACACACACACACACACACACACACACACAGAAATTATTCATGGTCATTGCACCATA
AGATTCTATCAGGAACTCAAAGCTTGGGGGATAAAACGGAGCAAGAGAATACTGTAACAAACTT
CGTACAGAGTTCGGTCTTTTAATTGTTTCATGTTAGATATTCTATGTGTTTACCTCAATTGAAA
AAAAAAAAGAATGTTTTTGCTAGTATCAGATCTGCTGTGGAATTGGTATTGTATGTCCATGGGA
TCCTCTTTTCTCAGCACGTGTTCCTCACTAGAAGAAAATGCTGTTACCTTTAAGCTTTGTCAAA
TTTACATTAAAATACTTGTATGAGGACTGTGACGTTATGTTAAAAAAAGGTGTTAAGTCACAAA
ATGCGGTAATAAATATTTCATTTTTGATTTTT

hide sequence

RefSeq Acc Id:

XM_006234747 ⟹ XP_006234809

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	102,742,905 - 102,943,588 (-)	NCBI
Rnor_6.0	3	107,560,172 - 107,760,584 (-)	NCBI
Rnor_5.0	3	114,124,722 - 114,327,367 (-)	NCBI

Sequence:

show sequence

CAGGAGGAGGAGGAGGAAGAAGAGAAAAAAAGAGAAAAAGAAGAAATATCACTGAAAAAAAATC
TTCGTTTTCTTGACTGGGCTTTCCCCACCCCCCTAAAAATAACATTGGAAAATTGGGAGAAGTC
TCCTTGGTTTGGAGAATAAGGACTCTTCAACCTAGCTCACTTTCTTATCCGGACTGGGATATTA
AATATACGACACATCCAGGAGTTTATTGGAGCGCAGACTGATGGCGCAAAGGTACGATGAGCTG
CCCCATTACGGCGGGATGGACGGAGTAGGGGTTCCTGCTTCCATGTACGGAGACCCTCACGCGC
CGCGGCCGATTCCCCCGGTTCACCACCTAAACCACGGGCCGCCGCTCCACGCCACGCAGCACTA
CGGCGCGCACGCCCCGCACCCCAATGTCATGCCAGCCAGCATGGGATCTGCTGTCAACGACGCC
TTGAAGAGAGACAAGGACGCGATCTACGGGCACCCGTTGTTTCCTCTGTTAGCGCTGGTCTTTG
AGAAGTGCGAGCTGGCGACTTGCACTCCCCGGGAACCCGGAGTGGCCGGCGGAGACGTCTGTTC
CTCTGACTCCTTCAACGAGGACATCGCGGTCTTCGCCAAGCAGGTTCGCGCCGAAAAGCCTCTT
TTTTCCTCAAATCCAGAGCTGGATAATTTGATGATACAAGCAATACAAGTGCTAAGGTTTCATC
TTCTGGAGTTAGAAAAGGTCCACGAACTGTGTGATAACTTCTGCCACCGGTACATTAGCTGTTT
GAAGGGGAAAATGCCCATTGACCTCGTGATTGATGAGAGAGACGGAAGCTCCAAGTCAGATCAT
GAAGAACTTTCAGGCTCCTCCACAAATCTCGCCGACCACAACCCTTCATCCTGGCGAGACCACG
ATGATGCAACCTCAACTCACTCAGCAGGCACCCCAGGACCCTCCAGCGGGGGCCATGCTTCCCA
GAGTGGAGACAACAGCAGTGAGCAAGGCGACGGGCTAGACAACAGTGTAGCTTCACCTGGCACA
GGTGATGACGACGATCCAGACAAGGACAAAAAACGCCAGAAGAAAAGAGGCATATTCCCCAAAG
TCGCGACAAATATCATGAGAGCGTGGCTCTTCCAGCATCTCACACACCCGTACCCTTCAGAAGA
GCAGAAGAAGCAGTTAGCACAAGACACGGGGCTGACAATTCTGCAAGTGAACAACTGGTTTATT
AATGCCAGAAGAAGAATAGTACAGCCCATGATTGACCAGTCAAATCGAGCAGGTTTTCTTCTTG
ATCCTTCAGTGAGCCAAGGAGCAGCGTATAGTCCAGAGGGTCAGCCTATGGGGAGCTTTGTATT
GGATGGTCAGCAACACATGGGGATCCGGCCCGCAGGTTTGCAGAGCATGCCAGGGGACTACGTT
TCTCAGGGTGGTCCAGTGGGAATGGGTATGGCCCAGCCGAGTTACACTCCTCCCCAGATGACCC
CACACCCTACTCAGTTAAGACATGGACCCCCAATGCATTCATATTTGCCAAGCCATCCCCACCA
CCCAGCCATGATGATGCACGGAGGACCCCCTACCCACCCTGGAATGACTATGTCAGCACAGAGC
CCCACAATGTTAAATTCTGTAGATCCCAATGTTGGCGGACAGGTTATGGACATTCATGCCCAAT
AGTATAAGGGAACTCAAGGAAGAAGGAAACACACGCAAAAACTATTGACTAAGACTCTCCGAAC
TTTGACCAGATGTGACACTTAATATGAAACTCCAGACAGCTGTGATTATTTTTTACTTTTGTCA
TTTTTCATCAAGCAACAGAGGACCAATGGGACAAGAACACAAATGTGAAGCGATGGGGGTCATC
GAGACAATTTTGTCCATGCAAAGATCCTCTGGAGAAAGACTCCGAGAGTTATAACTACTGTAGC
ATAAACATAGGGACTAAGTTAAACTTGTACATTTCTGTTGATCACTCCGTTATGTTGCCTCAAA
TAGTTTTAGAAGAGAAAAAAATATATCCTTGTTTTCCACACTATGTGTGTTGTTCCCAAAAGAA
TGACTGTCTTGGTTCATCAGTGAATTCACTATCCAGAAGAGAACTGTGGTATATTTTAAATCTG
TTGGGCCAATGAGAAAAGAACCACGCTGCGGAGAGAGATGGACACTTGGCTGAACCTCATCACT
AACTCCAGCGGCTAGAATGTGTTTTCATGCCCGGCCTTTGTTCCCCCGTCCGTGTGTCCTTTAG
TTTCAAACAGATCTTTATAGTTTGTGCTTCATAAGCCAATTCTTATTATGATTTTGGGGGACTG
TTCTTCAAAGAGCTTGCCAGTGAAGATTTAGAGACAAAGCGAAGACTTCTTCAAGTCCCAAGCC
TTGGCTATGGACAAAGCAATCTTAAGTTGGACAGCTTCCTCAACACGCGCACATGTGTGCGCGA
GCGCACACACACACACACACACACACACACACACACACACACAGAAATTATTCATGGTCATTGC
ACCATAAGATTCTATCAGGAACTCAAAGCTTGGGGGATAAAACGGAGCAAGAGAATACTGTAAC
AAACTTCGTACAGAGTTCGGTCTTTTAATTGTTTCATGTTAGATATTCTATGTGTTTACCTCAA
TTGAAAAAAAAAAAGAATGTTTTTGCTAGTATCAGATCTGCTGTGGAATTGGTATTGTATGTCC
ATGGGATCCTCTTTTCTCAGCACGTGTTCCTCACTAGAAGAAAATGCTGTTACCTTTAAGCTTT
GTCAAATTTACATTAAAATACTTGTATGAGGACTGTGACGTTATGTTAAAAAAAGGTGTTAAGT
CACAAAATGCGGTAATAAATATTTCATTTTTGATTTTT

hide sequence

RefSeq Acc Id:

XM_006234748 ⟹ XP_006234810

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	102,742,905 - 102,942,811 (-)	NCBI
Rnor_6.0	3	107,560,172 - 107,760,331 (-)	NCBI
Rnor_5.0	3	114,124,722 - 114,327,367 (-)	NCBI

Sequence:

show sequence

AATCTCCAACACTTACCTAGATATAAATCCTCTCCTACAGGGCCCTGCCCCATGCCTCCTCTCC
CTTTGAGCTGGCTGCTGCTGGTTGCTTGATGATGATGGCGGCCAGTATTTTAAAAAATAGTAGC
AAAATTATTCACCGGCTTCTTTCCCCCCTGTGCCTCTGCGTGTGTGAGAGTGTGTGTGCGTGCG
TGTGTGCGTGTCTGGGCGCGCGTGTCCCAGCGCTGTGCGAGCGGGCGGGCGGCGAGTGCGTGTG
AGTGGTGTATGTGTGTGTGTGTGTATGTGTGTGTATGTGTATGTGTGTGTGTGTGTGTGTGTGT
ATATACTTGTGTGCAATTGTTACACGCTTTCGCCTCGCTCCAGCTTTTACCCCGGCAGCGCGAT
TCCCCGGGTTCTCCTGCCGCCGCCGCTGCGCCTCTTTCGCCGCTGCTCGCGCGGCTCCGGGCGG
GCGCGGGCTGCGTAGGAGCCGCCGGCGTGGGGCCGCGCTGCCTAGACTAGCCCCGGCTGCTTGT
TTTGTCTCTGAAATTGACAAGGACGCAGGGAATCCGCTGCTAAATAATGTTTCTGTACGATGAG
CTGCCCCATTACGGCGGGATGGACGGAGTAGGGGTTCCTGCTTCCATGTACGGAGACCCTCACG
CGCCGCGGCCGATTCCCCCGGTTCACCACCTAAACCACGGGCCGCCGCTCCACGCCACGCAGCA
CTACGGCGCGCACGCCCCGCACCCCAATGTCATGCCAGCCAGCATGGGATCTGCTGTCAACGAC
GCCTTGAAGAGAGACAAGGACGCGATCTACGGGCACCCGTTGTTTCCTCTGTTAGCGCTGGTCT
TTGAGAAGTGCGAGCTGGCGACTTGCACTCCCCGGGAACCCGGAGTGGCCGGCGGAGACGTCTG
TTCCTCTGACTCCTTCAACGAGGACATCGCGGTCTTCGCCAAGCAGGTTCGCGCCGAAAAGCCT
CTTTTTTCCTCAAATCCAGAGCTGGATAATTTGATGATACAAGCAATACAAGTGCTAAGGTTTC
ATCTTCTGGAGTTAGAAAAGGTCCACGAACTGTGTGATAACTTCTGCCACCGGTACATTAGCTG
TTTGAAGGGGAAAATGCCCATTGACCTCGTGATTGATGAGAGAGACGGAAGCTCCAAGTCAGAT
CATGAAGAACTTTCAGGCTCCTCCACAAATCTCGCCGACCACAACCCTTCATCCTGGCGAGACC
ACGATGATGCAACCTCAACTCACTCAGCAGGCACCCCAGGACCCTCCAGCGGGGGCCATGCTTC
CCAGAGTGGAGACAACAGCAGTGAGCAAGGCGACGGGCTAGACAACAGTGTAGCTTCACCTGGC
ACAGGTGATGACGACGATCCAGACAAGGACAAAAAACGCCAGAAGAAAAGAGGCATATTCCCCA
AAGTCGCGACAAATATCATGAGAGCGTGGCTCTTCCAGCATCTCACACACCCGTACCCTTCAGA
AGAGCAGAAGAAGCAGTTAGCACAAGACACGGGGCTGACAATTCTGCAAGTGAACAACTGGTTT
ATTAATGCCAGAAGAAGAATAGTACAGCCCATGATTGACCAGTCAAATCGAGCAGGTTTTCTTC
TTGATCCTTCAGTGAGCCAAGGAGCAGCGTATAGTCCAGAGGGTCAGCCTATGGGGAGCTTTGT
ATTGGATGGTCAGCAACACATGGGGATCCGGCCCGCAGGTTTGCAGAGCATGCCAGGGGACTAC
GTTTCTCAGGGTGGTCCAGTGGGAATGGGTATGGCCCAGCCGAGTTACACTCCTCCCCAGATGA
CCCCACACCCTACTCAGTTAAGACATGGACCCCCAATGCATTCATATTTGCCAAGCCATCCCCA
CCACCCAGCCATGATGATGCACGGAGGACCCCCTACCCACCCTGGAATGACTATGTCAGCACAG
AGCCCCACAATGTTAAATTCTGTAGATCCCAATGTTGGCGGACAGGTTATGGACATTCATGCCC
AATAGTATAAGGGAACTCAAGGAAGAAGGAAACACACGCAAAAACTATTGACTAAGACTCTCCG
AACTTTGACCAGATGTGACACTTAATATGAAACTCCAGACAGCTGTGATTATTTTTTACTTTTG
TCATTTTTCATCAAGCAACAGAGGACCAATGGGACAAGAACACAAATGTGAAGCGATGGGGGTC
ATCGAGACAATTTTGTCCATGCAAAGATCCTCTGGAGAAAGACTCCGAGAGTTATAACTACTGT
AGCATAAACATAGGGACTAAGTTAAACTTGTACATTTCTGTTGATCACTCCGTTATGTTGCCTC
AAATAGTTTTAGAAGAGAAAAAAATATATCCTTGTTTTCCACACTATGTGTGTTGTTCCCAAAA
GAATGACTGTCTTGGTTCATCAGTGAATTCACTATCCAGAAGAGAACTGTGGTATATTTTAAAT
CTGTTGGGCCAATGAGAAAAGAACCACGCTGCGGAGAGAGATGGACACTTGGCTGAACCTCATC
ACTAACTCCAGCGGCTAGAATGTGTTTTCATGCCCGGCCTTTGTTCCCCCGTCCGTGTGTCCTT
TAGTTTCAAACAGATCTTTATAGTTTGTGCTTCATAAGCCAATTCTTATTATGATTTTGGGGGA
CTGTTCTTCAAAGAGCTTGCCAGTGAAGATTTAGAGACAAAGCGAAGACTTCTTCAAGTCCCAA
GCCTTGGCTATGGACAAAGCAATCTTAAGTTGGACAGCTTCCTCAACACGCGCACATGTGTGCG
CGAGCGCACACACACACACACACACACACACACACACACACACACAGAAATTATTCATGGTCAT
TGCACCATAAGATTCTATCAGGAACTCAAAGCTTGGGGGATAAAACGGAGCAAGAGAATACTGT
AACAAACTTCGTACAGAGTTCGGTCTTTTAATTGTTTCATGTTAGATATTCTATGTGTTTACCT
CAATTGAAAAAAAAAAAGAATGTTTTTGCTAGTATCAGATCTGCTGTGGAATTGGTATTGTATG
TCCATGGGATCCTCTTTTCTCAGCACGTGTTCCTCACTAGAAGAAAATGCTGTTACCTTTAAGC
TTTGTCAAATTTACATTAAAATACTTGTATGAGGACTGTGACGTTATGTTAAAAAAAGGTGTTA
AGTCACAAAATGCGGTAATAAATATTTCATTTTTGATTTTT

hide sequence

RefSeq Acc Id:

XM_006234749 ⟹ XP_006234811

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	102,742,905 - 102,943,588 (-)	NCBI
Rnor_6.0	3	107,560,172 - 107,760,583 (-)	NCBI
Rnor_5.0	3	114,124,722 - 114,327,367 (-)	NCBI

Sequence:

show sequence

AGGAGGAGGAGGAGGAAGAAGAGAAAAAAAGAGAAAAAGAAGAAATATCACTGAAAAAAAATCT
TCGTTTTCTTGACTGGGCTTTCCCCACCCCCCTAAAAATAACATTGGAAAATTGGGAGAAGTCT
CCTTGGTTTGGAGAATAAGGACTCTTCAACCTAGCTCACTTTCTTATCCGGACTGGGATATTAA
ATATACGACACATCCAGGAGTTTATTGGAGCGCAGACTGATGGCGCAAAGGTACGATGAGCTGC
CCCATTACGGCGGGATGGACGGAGTAGGGGTTCCTGCTTCCATGTACGGAGACCCTCACGCGCC
GCGGCCGATTCCCCCGGTTCACCACCTAAACCACGGGCCGCCGCTCCACGCCACGCAGCACTAC
GGCGCGCACGCCCCGCACCCCAATGTCATGCCAGCCAGCATGGGATCTGCTGTCAACGACGCCT
TGAAGAGAGACAAGGACGCGATCTACGGGCACCCGTTGTTTCCTCTGTTAGCGCTGGTCTTTGA
GAAGTGCGAGCTGGCGACTTGCACTCCCCGGGAACCCGGAGTGGCCGGCGGAGACGTCTGTTCC
TCTGACTCCTTCAACGAGGACATCGCGGTCTTCGCCAAGCAGGTTCGCGCCGAAAAGCCTCTTT
TTTCCTCAAATCCAGAGCTGGATAATTTGATGATACAAGCAATACAAGTGCTAAGGTTTCATCT
TCTGGAGTTAGAAAAGGTCCACGAACTGTGTGATAACTTCTGCCACCGGTACATTAGCTGTTTG
AAGGGGAAAATGCCCATTGACCTCGTGATTGATGAGAGAGACGGAAGCTCCAAGTCAGATCATG
AAGAACTTTCAGGCTCCTCCACAAATCTCGCCGACCACAACCCTTCATCCTGGCGAGACCACGA
TGATGCAACCTCAACTCACTCAGCAGGCACCCCAGGACCCTCCAGCGGGGGCCATGCTTCCCAG
AGTGGAGACAACAGCAGTGAGCAAGGCGACGGGCTAGACAACAGTGTAGCTTCACCTGGCACAG
GTGATGACGACGATCCAGACAAGGACAAAAAACGCCAGAAGAAAAGAGGCATATTCCCCAAAGT
CGCGACAAATATCATGAGAGCGTGGCTCTTCCAGCATCTCACACACCCGTACCCTTCAGAAGAG
CAGAAGAAGCAGTTAGCACAAGACACGGGGCTGACAATTCTGCAAGTGAACAACTGGTTTATTA
ATGCCAGAAGAAGAATAGTACAGCCCATGATTGACCAGTCAAATCGAGCAGTGAGCCAAGGAGC
AGCGTATAGTCCAGAGGGTCAGCCTATGGGGAGCTTTGTATTGGATGGTCAGCAACACATGGGG
ATCCGGCCCGCAGGTTTGCAGAGCATGCCAGGGGACTACGTTTCTCAGGGTGGTCCAGTGGGAA
TGGGTATGGCCCAGCCGAGTTACACTCCTCCCCAGATGACCCCACACCCTACTCAGTTAAGACA
TGGACCCCCAATGCATTCATATTTGCCAAGCCATCCCCACCACCCAGCCATGATGATGCACGGA
GGACCCCCTACCCACCCTGGAATGACTATGTCAGCACAGAGCCCCACAATGTTAAATTCTGTAG
ATCCCAATGTTGGCGGACAGGTTATGGACATTCATGCCCAATAGTATAAGGGAACTCAAGGAAG
AAGGAAACACACGCAAAAACTATTGACTAAGACTCTCCGAACTTTGACCAGATGTGACACTTAA
TATGAAACTCCAGACAGCTGTGATTATTTTTTACTTTTGTCATTTTTCATCAAGCAACAGAGGA
CCAATGGGACAAGAACACAAATGTGAAGCGATGGGGGTCATCGAGACAATTTTGTCCATGCAAA
GATCCTCTGGAGAAAGACTCCGAGAGTTATAACTACTGTAGCATAAACATAGGGACTAAGTTAA
ACTTGTACATTTCTGTTGATCACTCCGTTATGTTGCCTCAAATAGTTTTAGAAGAGAAAAAAAT
ATATCCTTGTTTTCCACACTATGTGTGTTGTTCCCAAAAGAATGACTGTCTTGGTTCATCAGTG
AATTCACTATCCAGAAGAGAACTGTGGTATATTTTAAATCTGTTGGGCCAATGAGAAAAGAACC
ACGCTGCGGAGAGAGATGGACACTTGGCTGAACCTCATCACTAACTCCAGCGGCTAGAATGTGT
TTTCATGCCCGGCCTTTGTTCCCCCGTCCGTGTGTCCTTTAGTTTCAAACAGATCTTTATAGTT
TGTGCTTCATAAGCCAATTCTTATTATGATTTTGGGGGACTGTTCTTCAAAGAGCTTGCCAGTG
AAGATTTAGAGACAAAGCGAAGACTTCTTCAAGTCCCAAGCCTTGGCTATGGACAAAGCAATCT
TAAGTTGGACAGCTTCCTCAACACGCGCACATGTGTGCGCGAGCGCACACACACACACACACAC
ACACACACACACACACACACAGAAATTATTCATGGTCATTGCACCATAAGATTCTATCAGGAAC
TCAAAGCTTGGGGGATAAAACGGAGCAAGAGAATACTGTAACAAACTTCGTACAGAGTTCGGTC
TTTTAATTGTTTCATGTTAGATATTCTATGTGTTTACCTCAATTGAAAAAAAAAAAGAATGTTT
TTGCTAGTATCAGATCTGCTGTGGAATTGGTATTGTATGTCCATGGGATCCTCTTTTCTCAGCA
CGTGTTCCTCACTAGAAGAAAATGCTGTTACCTTTAAGCTTTGTCAAATTTACATTAAAATACT
TGTATGAGGACTGTGACGTTATGTTAAAAAAAGGTGTTAAGTCACAAAATGCGGTAATAAATAT
TTCATTTTTGATTTTT

hide sequence

RefSeq Acc Id:

XM_006234750 ⟹ XP_006234812

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	102,742,905 - 102,944,833 (-)	NCBI
Rnor_6.0	3	107,560,172 - 107,762,225 (-)	NCBI
Rnor_5.0	3	114,124,722 - 114,327,367 (-)	NCBI

Sequence:

show sequence

AGCAAACAACTCCCCCTCCGATAACTCCTACCGCACTAACTCCCACCTTACTAACTCTCATCCT
GCTTTCTCCCTCCAGATTGCGCCCAGGACCCCTAGACTCTCCACGGTGGCCCACCCTGTCTGCA
GCGCACCGGGGGACTATGCTCGGAGTTCAGCTGCCCACATCTTGTACTAGAAAAAAATGAATAT
TGACAACAAGGGCTCTGCATCTGCACAAGAAAGAAAGTACCACTTAACAACAACAAAATATCCT
GGCCCGGCGATGGTGCAGTCGGCGGTGCTCGCTGCTCTAGGTTGTTAGCGGCAGAGTTCCGGAC
CTAGTAATCCGCCAGCAGAGGAAGGGGGCCGCGGAATTAAAACGAACAAAAGCTAGAGCGCCAT
GCCAAACATCCCCAACGCGACCCAGTTAGGCAGGAGCCAAGAGGAGTGGTGGGGAAATAAACGA
GAATACGATGAGCTGCCCCATTACGGCGGGATGGACGGAGTAGGGGTTCCTGCTTCCATGTACG
GAGACCCTCACGCGCCGCGGCCGATTCCCCCGGTTCACCACCTAAACCACGGGCCGCCGCTCCA
CGCCACGCAGCACTACGGCGCGCACGCCCCGCACCCCAATGTCATGCCAGCCAGCATGGGATCT
GCTGTCAACGACGCCTTGAAGAGAGACAAGGACGCGATCTACGGGCACCCGTTGTTTCCTCTGT
TAGCGCTGGTCTTTGAGAAGTGCGAGCTGGCGACTTGCACTCCCCGGGAACCCGGAGTGGCCGG
CGGAGACGTCTGTTCCTCTGACTCCTTCAACGAGGACATCGCGGTCTTCGCCAAGCAGGTTCGC
GCCGAAAAGCCTCTTTTTTCCTCAAATCCAGAGCTGGATAATTTGATGATACAAGCAATACAAG
TGCTAAGGTTTCATCTTCTGGAGTTAGAAAAGGTCCACGAACTGTGTGATAACTTCTGCCACCG
GTACATTAGCTGTTTGAAGGGGAAAATGCCCATTGACCTCGTGATTGATGAGAGAGACGGAAGC
TCCAAGTCAGATCATGAAGAACTTTCAGGCTCCTCCACAAATCTCGCCGACCACAACCCTTCAT
CCTGGCGAGACCACGATGATGCAACCTCAACTCACTCAGCAGGCACCCCAGGACCCTCCAGCGG
GGGCCATGCTTCCCAGAGTGGAGACAACAGCAGTGAGCAAGGCGACGGGCTAGACAACAGTGTA
GCTTCACCTGGCACAGGTGATGACGACGATCCAGACAAGGACAAAAAACGCCAGAAGAAAAGAG
GCATATTCCCCAAAGTCGCGACAAATATCATGAGAGCGTGGCTCTTCCAGCATCTCACACACCC
GTACCCTTCAGAAGAGCAGAAGAAGCAGTTAGCACAAGACACGGGGCTGACAATTCTGCAAGTG
AACAACTGGTTTATTAATGCCAGAAGAAGAATAGTACAGCCCATGATTGACCAGTCAAATCGAG
CAGGTTTTCTTCTTGATCCTTCAGTGAGCCAAGGAGCAGCGTATAGTCCAGAGGGTCAGCCTAT
GGGGAGCTTTGTATTGGATGGTCAGCAACACATGGGGATCCGGCCCGCAGGACCCATGAGTGGA
ATGGGCATGAATATGGGCATGGATGGGCAATGGCACTACATGTAACCTTCGCCATGTAAAGCAA
TCGCAAGGCAAGGGGGAAGTTTGCAGAGCATGCCAGGGGACTACGTTTCTCAGGGTGGTCCAGT
GGGAATGGGTATGGCCCAGCCGAGTTACACTCCTCCCCAGATGACCCCACACCCTACTCAGTTA
AGACATGGACCCCCAATGCATTCATATTTGCCAAGCCATCCCCACCACCCAGCCATGATGATGC
ACGGAGGACCCCCTACCCACCCTGGAATGACTATGTCAGCACAGAGCCCCACAATGTTAAATTC
TGTAGATCCCAATGTTGGCGGACAGGTTATGGACATTCATGCCCAATAGTATAAGGGAACTCAA
GGAAGAAGGAAACACACGCAAAAACTATTGACTAAGACTCTCCGAACTTTGACCAGATGTGACA
CTTAATATGAAACTCCAGACAGCTGTGATTATTTTTTACTTTTGTCATTTTTCATCAAGCAACA
GAGGACCAATGGGACAAGAACACAAATGTGAAGCGATGGGGGTCATCGAGACAATTTTGTCCAT
GCAAAGATCCTCTGGAGAAAGACTCCGAGAGTTATAACTACTGTAGCATAAACATAGGGACTAA
GTTAAACTTGTACATTTCTGTTGATCACTCCGTTATGTTGCCTCAAATAGTTTTAGAAGAGAAA
AAAATATATCCTTGTTTTCCACACTATGTGTGTTGTTCCCAAAAGAATGACTGTCTTGGTTCAT
CAGTGAATTCACTATCCAGAAGAGAACTGTGGTATATTTTAAATCTGTTGGGCCAATGAGAAAA
GAACCACGCTGCGGAGAGAGATGGACACTTGGCTGAACCTCATCACTAACTCCAGCGGCTAGAA
TGTGTTTTCATGCCCGGCCTTTGTTCCCCCGTCCGTGTGTCCTTTAGTTTCAAACAGATCTTTA
TAGTTTGTGCTTCATAAGCCAATTCTTATTATGATTTTGGGGGACTGTTCTTCAAAGAGCTTGC
CAGTGAAGATTTAGAGACAAAGCGAAGACTTCTTCAAGTCCCAAGCCTTGGCTATGGACAAAGC
AATCTTAAGTTGGACAGCTTCCTCAACACGCGCACATGTGTGCGCGAGCGCACACACACACACA
CACACACACACACACACACACACACAGAAATTATTCATGGTCATTGCACCATAAGATTCTATCA
GGAACTCAAAGCTTGGGGGATAAAACGGAGCAAGAGAATACTGTAACAAACTTCGTACAGAGTT
CGGTCTTTTAATTGTTTCATGTTAGATATTCTATGTGTTTACCTCAATTGAAAAAAAAAAAGAA
TGTTTTTGCTAGTATCAGATCTGCTGTGGAATTGGTATTGTATGTCCATGGGATCCTCTTTTCT
CAGCACGTGTTCCTCACTAGAAGAAAATGCTGTTACCTTTAAGCTTTGTCAAATTTACATTAAA
ATACTTGTATGAGGACTGTGACGTTATGTTAAAAAAAGGTGTTAAGTCACAAAATGCGGTAATA
AATATTTCATTTTTGATTTTT

hide sequence

RefSeq Acc Id:

XM_006234751 ⟹ XP_006234813

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	102,742,905 - 102,944,833 (-)	NCBI
Rnor_6.0	3	107,560,172 - 107,762,225 (-)	NCBI
Rnor_5.0	3	114,124,722 - 114,327,367 (-)	NCBI

Sequence:

show sequence

AGCAAACAACTCCCCCTCCGATAACTCCTACCGCACTAACTCCCACCTTACTAACTCTCATCCT
GCTTTCTCCCTCCAGATTGCGCCCAGGACCCCTAGACTCTCCACGGTGGCCCACCCTGTCTGCA
GCGCACCGGGGGACTATGCTCGGAGTTCAGCTGCCCACATCTTGTACTAGAAAAAAATGAATAT
TGACAACAAGGGCTCTGCATCTGCACAAGAAAGAAAGTACCACTTAACAACAACAAAATATCCT
GGCCCGGCGATGGTGCAGTCGGCGGTGCTCGCTGCTCTAGGTTGTTAGCGGCAGAGTTCCGGAC
CTAGTAATCCGCCAGCAGAGGAAGGGGGCCGCGGAATTAAAACGAACAAAAGCTAGAGCGCCAT
GCCAAACATCCCCAACGCGACCCAGTTAGGCAGGAGCCAAGAGGAGTGGTGGGGAAATAAACGA
GAATACGATGAGCTGCCCCATTACGGCGGGATGGACGGAGTAGGGGTTCCTGCTTCCATGTACG
GAGACCCTCACGCGCCGCGGCCGATTCCCCCGGTTCACCACCTAAACCACGGGCCGCCGCTCCA
CGCCACGCAGCACTACGGCGCGCACGCCCCGCACCCCAATGTCATGCCAGCCAGCATGGGATCT
GCTGTCAACGACGCCTTGAAGAGAGACAAGGACGCGATCTACGGGCACCCGTTGTTTCCTCTGT
TAGCGCTGGTCTTTGAGAAGTGCGAGCTGGCGACTTGCACTCCCCGGGAACCCGGAGTGGCCGG
CGGAGACGTCTGTTCCTCTGACTCCTTCAACGAGGACATCGCGGTCTTCGCCAAGCAGGTTCGC
GCCGAAAAGCCTCTTTTTTCCTCAAATCCAGAGCTGGATAATTTGATGATACAAGCAATACAAG
TGCTAAGGTTTCATCTTCTGGAGTTAGAAAAGGTCCACGAACTGTGTGATAACTTCTGCCACCG
GTACATTAGCTGTTTGAAGGGGAAAATGCCCATTGACCTCGTGATTGATGAGAGAGACGGAAGC
TCCAAGTCAGATCATGAAGAACTTTCAGGCTCCTCCACAAATCTCGCCGACCACAACCCTTCAT
CCTGGCGAGACCACGATGATGCAACCTCAACTCACTCAGCAGGCACCCCAGGACCCTCCAGCGG
GGGCCATGCTTCCCAGAGTGGAGACAACAGCAGTGAGCAAGGCGACGGGCTAGACAACAGTGTA
GCTTCACCTGGCACAGGTGATGACGACGATCCAGACAAGGACAAAAAACGCCAGAAGAAAAGAG
GCATATTCCCCAAAGTCGCGACAAATATCATGAGAGCGTGGCTCTTCCAGCATCTCACACACCC
GTACCCTTCAGAAGAGCAGAAGAAGCAGTTAGCACAAGACACGGGGCTGACAATTCTGCAAGTG
AACAACTGGTTTATTAATGCCAGAAGAAGAATAGTACAGCCCATGATTGACCAGTCAAATCGAG
CAGTGAGCCAAGGAGCAGCGTATAGTCCAGAGGGTCAGCCTATGGGGAGCTTTGTATTGGATGG
TCAGCAACACATGGGGATCCGGCCCGCAGGACCCATGAGTGGAATGGGCATGAATATGGGCATG
GATGGGCAATGGCACTACATGTAACCTTCGCCATGTAAAGCAATCGCAAGGCAAGGGGGAAGTT
TGCAGAGCATGCCAGGGGACTACGTTTCTCAGGGTGGTCCAGTGGGAATGGGTATGGCCCAGCC
GAGTTACACTCCTCCCCAGATGACCCCACACCCTACTCAGTTAAGACATGGACCCCCAATGCAT
TCATATTTGCCAAGCCATCCCCACCACCCAGCCATGATGATGCACGGAGGACCCCCTACCCACC
CTGGAATGACTATGTCAGCACAGAGCCCCACAATGTTAAATTCTGTAGATCCCAATGTTGGCGG
ACAGGTTATGGACATTCATGCCCAATAGTATAAGGGAACTCAAGGAAGAAGGAAACACACGCAA
AAACTATTGACTAAGACTCTCCGAACTTTGACCAGATGTGACACTTAATATGAAACTCCAGACA
GCTGTGATTATTTTTTACTTTTGTCATTTTTCATCAAGCAACAGAGGACCAATGGGACAAGAAC
ACAAATGTGAAGCGATGGGGGTCATCGAGACAATTTTGTCCATGCAAAGATCCTCTGGAGAAAG
ACTCCGAGAGTTATAACTACTGTAGCATAAACATAGGGACTAAGTTAAACTTGTACATTTCTGT
TGATCACTCCGTTATGTTGCCTCAAATAGTTTTAGAAGAGAAAAAAATATATCCTTGTTTTCCA
CACTATGTGTGTTGTTCCCAAAAGAATGACTGTCTTGGTTCATCAGTGAATTCACTATCCAGAA
GAGAACTGTGGTATATTTTAAATCTGTTGGGCCAATGAGAAAAGAACCACGCTGCGGAGAGAGA
TGGACACTTGGCTGAACCTCATCACTAACTCCAGCGGCTAGAATGTGTTTTCATGCCCGGCCTT
TGTTCCCCCGTCCGTGTGTCCTTTAGTTTCAAACAGATCTTTATAGTTTGTGCTTCATAAGCCA
ATTCTTATTATGATTTTGGGGGACTGTTCTTCAAAGAGCTTGCCAGTGAAGATTTAGAGACAAA
GCGAAGACTTCTTCAAGTCCCAAGCCTTGGCTATGGACAAAGCAATCTTAAGTTGGACAGCTTC
CTCAACACGCGCACATGTGTGCGCGAGCGCACACACACACACACACACACACACACACACACAC
ACACAGAAATTATTCATGGTCATTGCACCATAAGATTCTATCAGGAACTCAAAGCTTGGGGGAT
AAAACGGAGCAAGAGAATACTGTAACAAACTTCGTACAGAGTTCGGTCTTTTAATTGTTTCATG
TTAGATATTCTATGTGTTTACCTCAATTGAAAAAAAAAAAGAATGTTTTTGCTAGTATCAGATC
TGCTGTGGAATTGGTATTGTATGTCCATGGGATCCTCTTTTCTCAGCACGTGTTCCTCACTAGA
AGAAAATGCTGTTACCTTTAAGCTTTGTCAAATTTACATTAAAATACTTGTATGAGGACTGTGA
CGTTATGTTAAAAAAAGGTGTTAAGTCACAAAATGCGGTAATAAATATTTCATTTTTGATTTTT

hide sequence

RefSeq Acc Id:

XM_006234752 ⟹ XP_006234814

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	102,742,905 - 102,943,588 (-)	NCBI
Rnor_6.0	3	107,560,172 - 107,760,584 (-)	NCBI
Rnor_5.0	3	114,124,722 - 114,327,367 (-)	NCBI

Sequence:

show sequence

CAGGAGGAGGAGGAGGAAGAAGAGAAAAAAAGAGAAAAAGAAGAAATATCACTGAAAAAAAATC
TTCGTTTTCTTGACTGGGCTTTCCCCACCCCCCTAAAAATAACATTGGAAAATTGGGAGAAGTC
TCCTTGGTTTGGAGAATAAGGACTCTTCAACCTAGCTCACTTTCTTATCCGGACTGGGATATTA
AATATACGACACATCCAGGAGTTTATTGGAGCGCAGACTGATGGCGCAAAGGTACGATGAGCTG
CCCCATTACGGCGGGATGGACGGAGTAGGGGTTCCTGCTTCCATGTACGGAGACCCTCACGCGC
CGCGGCCGATTCCCCCGGTTCACCACCTAAACCACGGGCCGCCGCTCCACGCCACGCAGCACTA
CGGCGCGCACGCCCCGCACCCCAATGTCATGCCAGCCAGCATGGGATCTGCTGTCAACGACGCC
TTGAAGAGAGACAAGGACGCGATCTACGGGCACCCGTTGTTTCCTCTGTTAGCGCTGGTCTTTG
AGAAGTGCGAGCTGGCGACTTGCACTCCCCGGGAACCCGGAGTGGCCGGCGGAGACGTCTGTTC
CTCTGACTCCTTCAACGAGGACATCGCGGTCTTCGCCAAGCAGGTTCGCGCCGAAAAGCCTCTT
TTTTCCTCAAATCCAGAGCTGGATAATTTGATGATACAAGCAATACAAGTGCTAAGGTTTCATC
TTCTGGAGTTAGAAAAGGTCCACGAACTGTGTGATAACTTCTGCCACCGGTACATTAGCTGTTT
GAAGGGGAAAATGCCCATTGACCTCGTGATTGATGAGAGAGACGGAAGCTCCAAGTCAGATCAT
GAAGAACTTTCAGGCTCCTCCACAAATCTCGCCGACCACAACCCTTCATCCTGGCGAGACCACG
ATGATGCAACCTCAACTCACTCAGCAGGCACCCCAGGACCCTCCAGCGGGGGCCATGCTTCCCA
GAGTGGAGACAACAGCAGTGAGCAAGGCGACGGGCTAGACAACAGTGTAGCTTCACCTGGCACA
GGTGATGACGACGATCCAGACAAGGACAAAAAACGCCAGAAGAAAAGAGGCATATTCCCCAAAG
TCGCGACAAATATCATGAGAGCGTGGCTCTTCCAGCATCTCACACACCCGTACCCTTCAGAAGA
GCAGAAGAAGCAGTTAGCACAAGACACGGGGCTGACAATTCTGCAAGTGAACAACTGGTTTATT
AATGCCAGAAGAAGAATAGTACAGCCCATGATTGACCAGTCAAATCGAGCAGGTTTTCTTCTTG
ATCCTTCAGTGAGCCAAGGAGCAGCGTATAGTCCAGAGGGTCAGCCTATGGGGAGCTTTGTATT
GGATGGTCAGCAACACATGGGGATCCGGCCCGCAGGACCCATGAGTGGAATGGGCATGAATATG
GGCATGGATGGGCAATGGCACTACATGTAACCTTCGCCATGTAAAGCAATCGCAAGGCAAGGGG
GAAGTTTGCAGAGCATGCCAGGGGACTACGTTTCTCAGGGTGGTCCAGTGGGAATGGGTATGGC
CCAGCCGAGTTACACTCCTCCCCAGATGACCCCACACCCTACTCAGTTAAGACATGGACCCCCA
ATGCATTCATATTTGCCAAGCCATCCCCACCACCCAGCCATGATGATGCACGGAGGACCCCCTA
CCCACCCTGGAATGACTATGTCAGCACAGAGCCCCACAATGTTAAATTCTGTAGATCCCAATGT
TGGCGGACAGGTTATGGACATTCATGCCCAATAGTATAAGGGAACTCAAGGAAGAAGGAAACAC
ACGCAAAAACTATTGACTAAGACTCTCCGAACTTTGACCAGATGTGACACTTAATATGAAACTC
CAGACAGCTGTGATTATTTTTTACTTTTGTCATTTTTCATCAAGCAACAGAGGACCAATGGGAC
AAGAACACAAATGTGAAGCGATGGGGGTCATCGAGACAATTTTGTCCATGCAAAGATCCTCTGG
AGAAAGACTCCGAGAGTTATAACTACTGTAGCATAAACATAGGGACTAAGTTAAACTTGTACAT
TTCTGTTGATCACTCCGTTATGTTGCCTCAAATAGTTTTAGAAGAGAAAAAAATATATCCTTGT
TTTCCACACTATGTGTGTTGTTCCCAAAAGAATGACTGTCTTGGTTCATCAGTGAATTCACTAT
CCAGAAGAGAACTGTGGTATATTTTAAATCTGTTGGGCCAATGAGAAAAGAACCACGCTGCGGA
GAGAGATGGACACTTGGCTGAACCTCATCACTAACTCCAGCGGCTAGAATGTGTTTTCATGCCC
GGCCTTTGTTCCCCCGTCCGTGTGTCCTTTAGTTTCAAACAGATCTTTATAGTTTGTGCTTCAT
AAGCCAATTCTTATTATGATTTTGGGGGACTGTTCTTCAAAGAGCTTGCCAGTGAAGATTTAGA
GACAAAGCGAAGACTTCTTCAAGTCCCAAGCCTTGGCTATGGACAAAGCAATCTTAAGTTGGAC
AGCTTCCTCAACACGCGCACATGTGTGCGCGAGCGCACACACACACACACACACACACACACAC
ACACACACACAGAAATTATTCATGGTCATTGCACCATAAGATTCTATCAGGAACTCAAAGCTTG
GGGGATAAAACGGAGCAAGAGAATACTGTAACAAACTTCGTACAGAGTTCGGTCTTTTAATTGT
TTCATGTTAGATATTCTATGTGTTTACCTCAATTGAAAAAAAAAAAGAATGTTTTTGCTAGTAT
CAGATCTGCTGTGGAATTGGTATTGTATGTCCATGGGATCCTCTTTTCTCAGCACGTGTTCCTC
ACTAGAAGAAAATGCTGTTACCTTTAAGCTTTGTCAAATTTACATTAAAATACTTGTATGAGGA
CTGTGACGTTATGTTAAAAAAAGGTGTTAAGTCACAAAATGCGGTAATAAATATTTCATTTTTG
ATTTTT

hide sequence

RefSeq Acc Id:

XM_006234753 ⟹ XP_006234815

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	102,742,905 - 102,942,811 (-)	NCBI
Rnor_6.0	3	107,560,172 - 107,760,332 (-)	NCBI
Rnor_5.0	3	114,124,722 - 114,327,367 (-)	NCBI

Sequence:

show sequence

AAATCTCCAACACTTACCTAGATATAAATCCTCTCCTACAGGGCCCTGCCCCATGCCTCCTCTC
CCTTTGAGCTGGCTGCTGCTGGTTGCTTGATGATGATGGCGGCCAGTATTTTAAAAAATAGTAG
CAAAATTATTCACCGGCTTCTTTCCCCCCTGTGCCTCTGCGTGTGTGAGAGTGTGTGTGCGTGC
GTGTGTGCGTGTCTGGGCGCGCGTGTCCCAGCGCTGTGCGAGCGGGCGGGCGGCGAGTGCGTGT
GAGTGGTGTATGTGTGTGTGTGTGTATGTGTGTGTATGTGTATGTGTGTGTGTGTGTGTGTGTG
TATATACTTGTGTGCAATTGTTACACGCTTTCGCCTCGCTCCAGCTTTTACCCCGGCAGCGCGA
TTCCCCGGGTTCTCCTGCCGCCGCCGCTGCGCCTCTTTCGCCGCTGCTCGCGCGGCTCCGGGCG
GGCGCGGGCTGCGTAGGAGCCGCCGGCGTGGGGCCGCGCTGCCTAGACTAGCCCCGGCTGCTTG
TTTTGTCTCTGAAATTGACAAGGACGCAGGGAATCCGCTGCTAAATAATGTTTCTGTACGATGA
GCTGCCCCATTACGGCGGGATGGACGGAGTAGGGGTTCCTGCTTCCATGTACGGAGACCCTCAC
GCGCCGCGGCCGATTCCCCCGGTTCACCACCTAAACCACGGGCCGCCGCTCCACGCCACGCAGC
ACTACGGCGCGCACGCCCCGCACCCCAATGTCATGCCAGCCAGCATGGGATCTGCTGTCAACGA
CGCCTTGAAGAGAGACAAGGACGCGATCTACGGGCACCCGTTGTTTCCTCTGTTAGCGCTGGTC
TTTGAGAAGTGCGAGCTGGCGACTTGCACTCCCCGGGAACCCGGAGTGGCCGGCGGAGACGTCT
GTTCCTCTGACTCCTTCAACGAGGACATCGCGGTCTTCGCCAAGCAGGTTCGCGCCGAAAAGCC
TCTTTTTTCCTCAAATCCAGAGCTGGATAATTTGATGATACAAGCAATACAAGTGCTAAGGTTT
CATCTTCTGGAGTTAGAAAAGGTCCACGAACTGTGTGATAACTTCTGCCACCGGTACATTAGCT
GTTTGAAGGGGAAAATGCCCATTGACCTCGTGATTGATGAGAGAGACGGAAGCTCCAAGTCAGA
TCATGAAGAACTTTCAGGCTCCTCCACAAATCTCGCCGACCACAACCCTTCATCCTGGCGAGAC
CACGATGATGCAACCTCAACTCACTCAGCAGGCACCCCAGGACCCTCCAGCGGGGGCCATGCTT
CCCAGAGTGGAGACAACAGCAGTGAGCAAGGCGACGGGCTAGACAACAGTGTAGCTTCACCTGG
CACAGGTGATGACGACGATCCAGACAAGGACAAAAAACGCCAGAAGAAAAGAGGCATATTCCCC
AAAGTCGCGACAAATATCATGAGAGCGTGGCTCTTCCAGCATCTCACACACCCGTACCCTTCAG
AAGAGCAGAAGAAGCAGTTAGCACAAGACACGGGGCTGACAATTCTGCAAGTGAACAACTGGTT
TATTAATGCCAGAAGAAGAATAGTACAGCCCATGATTGACCAGTCAAATCGAGCAGGTTTTCTT
CTTGATCCTTCAGTGAGCCAAGGAGCAGCGTATAGTCCAGAGGGTCAGCCTATGGGGAGCTTTG
TATTGGATGGTCAGCAACACATGGGGATCCGGCCCGCAGGACCCATGAGTGGAATGGGCATGAA
TATGGGCATGGATGGGCAATGGCACTACATGTAACCTTCGCCATGTAAAGCAATCGCAAGGCAA
GGGGGAAGTTTGCAGAGCATGCCAGGGGACTACGTTTCTCAGGGTGGTCCAGTGGGAATGGGTA
TGGCCCAGCCGAGTTACACTCCTCCCCAGATGACCCCACACCCTACTCAGTTAAGACATGGACC
CCCAATGCATTCATATTTGCCAAGCCATCCCCACCACCCAGCCATGATGATGCACGGAGGACCC
CCTACCCACCCTGGAATGACTATGTCAGCACAGAGCCCCACAATGTTAAATTCTGTAGATCCCA
ATGTTGGCGGACAGGTTATGGACATTCATGCCCAATAGTATAAGGGAACTCAAGGAAGAAGGAA
ACACACGCAAAAACTATTGACTAAGACTCTCCGAACTTTGACCAGATGTGACACTTAATATGAA
ACTCCAGACAGCTGTGATTATTTTTTACTTTTGTCATTTTTCATCAAGCAACAGAGGACCAATG
GGACAAGAACACAAATGTGAAGCGATGGGGGTCATCGAGACAATTTTGTCCATGCAAAGATCCT
CTGGAGAAAGACTCCGAGAGTTATAACTACTGTAGCATAAACATAGGGACTAAGTTAAACTTGT
ACATTTCTGTTGATCACTCCGTTATGTTGCCTCAAATAGTTTTAGAAGAGAAAAAAATATATCC
TTGTTTTCCACACTATGTGTGTTGTTCCCAAAAGAATGACTGTCTTGGTTCATCAGTGAATTCA
CTATCCAGAAGAGAACTGTGGTATATTTTAAATCTGTTGGGCCAATGAGAAAAGAACCACGCTG
CGGAGAGAGATGGACACTTGGCTGAACCTCATCACTAACTCCAGCGGCTAGAATGTGTTTTCAT
GCCCGGCCTTTGTTCCCCCGTCCGTGTGTCCTTTAGTTTCAAACAGATCTTTATAGTTTGTGCT
TCATAAGCCAATTCTTATTATGATTTTGGGGGACTGTTCTTCAAAGAGCTTGCCAGTGAAGATT
TAGAGACAAAGCGAAGACTTCTTCAAGTCCCAAGCCTTGGCTATGGACAAAGCAATCTTAAGTT
GGACAGCTTCCTCAACACGCGCACATGTGTGCGCGAGCGCACACACACACACACACACACACAC
ACACACACACACACAGAAATTATTCATGGTCATTGCACCATAAGATTCTATCAGGAACTCAAAG
CTTGGGGGATAAAACGGAGCAAGAGAATACTGTAACAAACTTCGTACAGAGTTCGGTCTTTTAA
TTGTTTCATGTTAGATATTCTATGTGTTTACCTCAATTGAAAAAAAAAAAGAATGTTTTTGCTA
GTATCAGATCTGCTGTGGAATTGGTATTGTATGTCCATGGGATCCTCTTTTCTCAGCACGTGTT
CCTCACTAGAAGAAAATGCTGTTACCTTTAAGCTTTGTCAAATTTACATTAAAATACTTGTATG
AGGACTGTGACGTTATGTTAAAAAAAGGTGTTAAGTCACAAAATGCGGTAATAAATATTTCATT
TTTGATTTTT

hide sequence

RefSeq Acc Id:

XM_006234754 ⟹ XP_006234816

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	102,742,905 - 102,943,588 (-)	NCBI
Rnor_6.0	3	107,560,172 - 107,760,584 (-)	NCBI
Rnor_5.0	3	114,124,722 - 114,327,367 (-)	NCBI

Sequence:

show sequence

CAGGAGGAGGAGGAGGAAGAAGAGAAAAAAAGAGAAAAAGAAGAAATATCACTGAAAAAAAATC
TTCGTTTTCTTGACTGGGCTTTCCCCACCCCCCTAAAAATAACATTGGAAAATTGGGAGAAGTC
TCCTTGGTTTGGAGAATAAGGACTCTTCAACCTAGCTCACTTTCTTATCCGGACTGGGATATTA
AATATACGACACATCCAGGAGTTTATTGGAGCGCAGACTGATGGCGCAAAGGTACGATGAGCTG
CCCCATTACGGCGGGATGGACGGAGTAGGGGTTCCTGCTTCCATGTACGGAGACCCTCACGCGC
CGCGGCCGATTCCCCCGGTTCACCACCTAAACCACGGGCCGCCGCTCCACGCCACGCAGCACTA
CGGCGCGCACGCCCCGCACCCCAATGTCATGCCAGCCAGCATGGGATCTGCTGTCAACGACGCC
TTGAAGAGAGACAAGGACGCGATCTACGGGCACCCGTTGTTTCCTCTGTTAGCGCTGGTCTTTG
AGAAGTGCGAGCTGGCGACTTGCACTCCCCGGGAACCCGGAGTGGCCGGCGGAGACGTCTGTTC
CTCTGACTCCTTCAACGAGGACATCGCGGTCTTCGCCAAGCAGGTTCGCGCCGAAAAGCCTCTT
TTTTCCTCAAATCCAGAGCTGGATAATTTGATGATACAAGCAATACAAGTGCTAAGGTTTCATC
TTCTGGAGTTAGAAAAGGTCCACGAACTGTGTGATAACTTCTGCCACCGGTACATTAGCTGTTT
GAAGGGGAAAATGCCCATTGACCTCGTGATTGATGAGAGAGACGGAAGCTCCAAGTCAGATCAT
GAAGAACTTTCAGGCTCCTCCACAAATCTCGCCGACCACAACCCTTCATCCTGGCGAGACCACG
ATGATGCAACCTCAACTCACTCAGCAGGCACCCCAGGACCCTCCAGCGGGGGCCATGCTTCCCA
GAGTGGAGACAACAGCAGTGAGCAAGGCGACGGGCTAGACAACAGTGTAGCTTCACCTGGCACA
GGTGATGACGACGATCCAGACAAGGACAAAAAACGCCAGAAGAAAAGAGGCATATTCCCCAAAG
TCGCGACAAATATCATGAGAGCGTGGCTCTTCCAGCATCTCACACACCCGTACCCTTCAGAAGA
GCAGAAGAAGCAGTTAGCACAAGACACGGGGCTGACAATTCTGCAAGTGAACAACTGGTTTATT
AATGCCAGAAGAAGAATAGTACAGCCCATGATTGACCAGTCAAATCGAGCAGTGAGCCAAGGAG
CAGCGTATAGTCCAGAGGGTCAGCCTATGGGGAGCTTTGTATTGGATGGTCAGCAACACATGGG
GATCCGGCCCGCAGGACCCATGAGTGGAATGGGCATGAATATGGGCATGGATGGGCAATGGCAC
TACATGTAACCTTCGCCATGTAAAGCAATCGCAAGGCAAGGGGGAAGTTTGCAGAGCATGCCAG
GGGACTACGTTTCTCAGGGTGGTCCAGTGGGAATGGGTATGGCCCAGCCGAGTTACACTCCTCC
CCAGATGACCCCACACCCTACTCAGTTAAGACATGGACCCCCAATGCATTCATATTTGCCAAGC
CATCCCCACCACCCAGCCATGATGATGCACGGAGGACCCCCTACCCACCCTGGAATGACTATGT
CAGCACAGAGCCCCACAATGTTAAATTCTGTAGATCCCAATGTTGGCGGACAGGTTATGGACAT
TCATGCCCAATAGTATAAGGGAACTCAAGGAAGAAGGAAACACACGCAAAAACTATTGACTAAG
ACTCTCCGAACTTTGACCAGATGTGACACTTAATATGAAACTCCAGACAGCTGTGATTATTTTT
TACTTTTGTCATTTTTCATCAAGCAACAGAGGACCAATGGGACAAGAACACAAATGTGAAGCGA
TGGGGGTCATCGAGACAATTTTGTCCATGCAAAGATCCTCTGGAGAAAGACTCCGAGAGTTATA
ACTACTGTAGCATAAACATAGGGACTAAGTTAAACTTGTACATTTCTGTTGATCACTCCGTTAT
GTTGCCTCAAATAGTTTTAGAAGAGAAAAAAATATATCCTTGTTTTCCACACTATGTGTGTTGT
TCCCAAAAGAATGACTGTCTTGGTTCATCAGTGAATTCACTATCCAGAAGAGAACTGTGGTATA
TTTTAAATCTGTTGGGCCAATGAGAAAAGAACCACGCTGCGGAGAGAGATGGACACTTGGCTGA
ACCTCATCACTAACTCCAGCGGCTAGAATGTGTTTTCATGCCCGGCCTTTGTTCCCCCGTCCGT
GTGTCCTTTAGTTTCAAACAGATCTTTATAGTTTGTGCTTCATAAGCCAATTCTTATTATGATT
TTGGGGGACTGTTCTTCAAAGAGCTTGCCAGTGAAGATTTAGAGACAAAGCGAAGACTTCTTCA
AGTCCCAAGCCTTGGCTATGGACAAAGCAATCTTAAGTTGGACAGCTTCCTCAACACGCGCACA
TGTGTGCGCGAGCGCACACACACACACACACACACACACACACACACACACACAGAAATTATTC
ATGGTCATTGCACCATAAGATTCTATCAGGAACTCAAAGCTTGGGGGATAAAACGGAGCAAGAG
AATACTGTAACAAACTTCGTACAGAGTTCGGTCTTTTAATTGTTTCATGTTAGATATTCTATGT
GTTTACCTCAATTGAAAAAAAAAAAGAATGTTTTTGCTAGTATCAGATCTGCTGTGGAATTGGT
ATTGTATGTCCATGGGATCCTCTTTTCTCAGCACGTGTTCCTCACTAGAAGAAAATGCTGTTAC
CTTTAAGCTTTGTCAAATTTACATTAAAATACTTGTATGAGGACTGTGACGTTATGTTAAAAAA
AGGTGTTAAGTCACAAAATGCGGTAATAAATATTTCATTTTTGATTTTT

hide sequence

RefSeq Acc Id:

XM_006234755 ⟹ XP_006234817

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	102,742,905 - 102,942,811 (-)	NCBI
Rnor_6.0	3	107,560,172 - 107,760,331 (-)	NCBI
Rnor_5.0	3	114,124,722 - 114,327,367 (-)	NCBI

Sequence:

show sequence

AATCTCCAACACTTACCTAGATATAAATCCTCTCCTACAGGGCCCTGCCCCATGCCTCCTCTCC
CTTTGAGCTGGCTGCTGCTGGTTGCTTGATGATGATGGCGGCCAGTATTTTAAAAAATAGTAGC
AAAATTATTCACCGGCTTCTTTCCCCCCTGTGCCTCTGCGTGTGTGAGAGTGTGTGTGCGTGCG
TGTGTGCGTGTCTGGGCGCGCGTGTCCCAGCGCTGTGCGAGCGGGCGGGCGGCGAGTGCGTGTG
AGTGGTGTATGTGTGTGTGTGTGTATGTGTGTGTATGTGTATGTGTGTGTGTGTGTGTGTGTGT
ATATACTTGTGTGCAATTGTTACACGCTTTCGCCTCGCTCCAGCTTTTACCCCGGCAGCGCGAT
TCCCCGGGTTCTCCTGCCGCCGCCGCTGCGCCTCTTTCGCCGCTGCTCGCGCGGCTCCGGGCGG
GCGCGGGCTGCGTAGGAGCCGCCGGCGTGGGGCCGCGCTGCCTAGACTAGCCCCGGCTGCTTGT
TTTGTCTCTGAAATTGACAAGGACGCAGGGAATCCGCTGCTAAATAATGTTTCTGTACGATGAG
CTGCCCCATTACGGCGGGATGGACGGAGTAGGGGTTCCTGCTTCCATGTACGGAGACCCTCACG
CGCCGCGGCCGATTCCCCCGGTTCACCACCTAAACCACGGGCCGCCGCTCCACGCCACGCAGCA
CTACGGCGCGCACGCCCCGCACCCCAATGTCATGCCAGCCAGCATGGGATCTGCTGTCAACGAC
GCCTTGAAGAGAGACAAGGACGCGATCTACGGGCACCCGTTGTTTCCTCTGTTAGCGCTGGTCT
TTGAGAAGTGCGAGCTGGCGACTTGCACTCCCCGGGAACCCGGAGTGGCCGGCGGAGACGTCTG
TTCCTCTGACTCCTTCAACGAGGACATCGCGGTCTTCGCCAAGCAGGTTCGCGCCGAAAAGCCT
CTTTTTTCCTCAAATCCAGAGCTGGATAATTTGATGATACAAGCAATACAAGTGCTAAGGTTTC
ATCTTCTGGAGTTAGAAAAGGTCCACGAACTGTGTGATAACTTCTGCCACCGGTACATTAGCTG
TTTGAAGGGGAAAATGCCCATTGACCTCGTGATTGATGAGAGAGACGGAAGCTCCAAGTCAGAT
CATGAAGAACTTTCAGGCTCCTCCACAAATCTCGCCGACCACAACCCTTCATCCTGGCGAGACC
ACGATGATGCAACCTCAACTCACTCAGCAGGCACCCCAGGACCCTCCAGCGGGGGCCATGCTTC
CCAGAGTGGAGACAACAGCAGTGAGCAAGGCGACGGGCTAGACAACAGTGTAGCTTCACCTGGC
ACAGGTGATGACGACGATCCAGACAAGGACAAAAAACGCCAGAAGAAAAGAGGCATATTCCCCA
AAGTCGCGACAAATATCATGAGAGCGTGGCTCTTCCAGCATCTCACACACCCGTACCCTTCAGA
AGAGCAGAAGAAGCAGTTAGCACAAGACACGGGGCTGACAATTCTGCAAGTGAACAACTGGTTT
ATTAATGCCAGAAGAAGAATAGTACAGCCCATGATTGACCAGTCAAATCGAGCAGTGAGCCAAG
GAGCAGCGTATAGTCCAGAGGGTCAGCCTATGGGGAGCTTTGTATTGGATGGTCAGCAACACAT
GGGGATCCGGCCCGCAGGACCCATGAGTGGAATGGGCATGAATATGGGCATGGATGGGCAATGG
CACTACATGTAACCTTCGCCATGTAAAGCAATCGCAAGGCAAGGGGGAAGTTTGCAGAGCATGC
CAGGGGACTACGTTTCTCAGGGTGGTCCAGTGGGAATGGGTATGGCCCAGCCGAGTTACACTCC
TCCCCAGATGACCCCACACCCTACTCAGTTAAGACATGGACCCCCAATGCATTCATATTTGCCA
AGCCATCCCCACCACCCAGCCATGATGATGCACGGAGGACCCCCTACCCACCCTGGAATGACTA
TGTCAGCACAGAGCCCCACAATGTTAAATTCTGTAGATCCCAATGTTGGCGGACAGGTTATGGA
CATTCATGCCCAATAGTATAAGGGAACTCAAGGAAGAAGGAAACACACGCAAAAACTATTGACT
AAGACTCTCCGAACTTTGACCAGATGTGACACTTAATATGAAACTCCAGACAGCTGTGATTATT
TTTTACTTTTGTCATTTTTCATCAAGCAACAGAGGACCAATGGGACAAGAACACAAATGTGAAG
CGATGGGGGTCATCGAGACAATTTTGTCCATGCAAAGATCCTCTGGAGAAAGACTCCGAGAGTT
ATAACTACTGTAGCATAAACATAGGGACTAAGTTAAACTTGTACATTTCTGTTGATCACTCCGT
TATGTTGCCTCAAATAGTTTTAGAAGAGAAAAAAATATATCCTTGTTTTCCACACTATGTGTGT
TGTTCCCAAAAGAATGACTGTCTTGGTTCATCAGTGAATTCACTATCCAGAAGAGAACTGTGGT
ATATTTTAAATCTGTTGGGCCAATGAGAAAAGAACCACGCTGCGGAGAGAGATGGACACTTGGC
TGAACCTCATCACTAACTCCAGCGGCTAGAATGTGTTTTCATGCCCGGCCTTTGTTCCCCCGTC
CGTGTGTCCTTTAGTTTCAAACAGATCTTTATAGTTTGTGCTTCATAAGCCAATTCTTATTATG
ATTTTGGGGGACTGTTCTTCAAAGAGCTTGCCAGTGAAGATTTAGAGACAAAGCGAAGACTTCT
TCAAGTCCCAAGCCTTGGCTATGGACAAAGCAATCTTAAGTTGGACAGCTTCCTCAACACGCGC
ACATGTGTGCGCGAGCGCACACACACACACACACACACACACACACACACACACACAGAAATTA
TTCATGGTCATTGCACCATAAGATTCTATCAGGAACTCAAAGCTTGGGGGATAAAACGGAGCAA
GAGAATACTGTAACAAACTTCGTACAGAGTTCGGTCTTTTAATTGTTTCATGTTAGATATTCTA
TGTGTTTACCTCAATTGAAAAAAAAAAAGAATGTTTTTGCTAGTATCAGATCTGCTGTGGAATT
GGTATTGTATGTCCATGGGATCCTCTTTTCTCAGCACGTGTTCCTCACTAGAAGAAAATGCTGT
TACCTTTAAGCTTTGTCAAATTTACATTAAAATACTTGTATGAGGACTGTGACGTTATGTTAAA
AAAAGGTGTTAAGTCACAAAATGCGGTAATAAATATTTCATTTTTGATTTTT

hide sequence

RefSeq Acc Id:

XM_039104936 ⟹ XP_038960864

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	102,742,905 - 102,944,833 (-)	NCBI

RefSeq Acc Id:

XM_039104937 ⟹ XP_038960865

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	102,742,905 - 102,942,811 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001101228	(Get FASTA)	NCBI Sequence Viewer
	XP_006234808	(Get FASTA)	NCBI Sequence Viewer
	XP_006234809	(Get FASTA)	NCBI Sequence Viewer
	XP_006234810	(Get FASTA)	NCBI Sequence Viewer
	XP_006234811	(Get FASTA)	NCBI Sequence Viewer
	XP_006234812	(Get FASTA)	NCBI Sequence Viewer
	XP_006234813	(Get FASTA)	NCBI Sequence Viewer
	XP_006234814	(Get FASTA)	NCBI Sequence Viewer
	XP_006234815	(Get FASTA)	NCBI Sequence Viewer
	XP_006234816	(Get FASTA)	NCBI Sequence Viewer
	XP_006234817	(Get FASTA)	NCBI Sequence Viewer
	XP_038960864	(Get FASTA)	NCBI Sequence Viewer
	XP_038960865	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL79837	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001101228 ⟸ NM_001107758

- UniProtKB:

D4A2T5 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAQRYDELPHYGGMDGVGVPASMYGDPHAPRPIPPVHHLNHGPPLHATQHYGAHAPHPNVMPAS
MGSAVNDALKRDKDAIYGHPLFPLLALVFEKCELATCTPREPGVAGGDVCSSDSFNEDIAVFAK
QVRAEKPLFSSNPELDNLMIQAIQVLRFHLLELEKVHELCDNFCHRYISCLKGKMPIDLVIDER
DGSSKSDHEELSGSSTNLADHNPSSWRDHDDATSTHSAGTPGPSSGGHASQSGDNSSEQGDGLD
NSVASPGTGDDDDPDKDKKRQKKRGIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTI
LQVNNWFINARRRIVQPMIDQSNRAGNQGAAYSPEGQPMGSFVLDGQQHMGIRPAGLQSMPGDY
VSQGGPVGMGMAQPSYTPPQMTPHPTQLRHGPPMHSYLPSHPHHPAMMMHGGPPTHPGMTMSAQ
SPTMLNSVDPNVGGQVMDIHAQ

hide sequence

RefSeq Acc Id:

XP_006234813 ⟸ XM_006234751

- Peptide Label:

isoform X8

- Sequence:

show sequence

MPNIPNATQLGRSQEEWWGNKREYDELPHYGGMDGVGVPASMYGDPHAPRPIPPVHHLNHGPPL
HATQHYGAHAPHPNVMPASMGSAVNDALKRDKDAIYGHPLFPLLALVFEKCELATCTPREPGVA
GGDVCSSDSFNEDIAVFAKQVRAEKPLFSSNPELDNLMIQAIQVLRFHLLELEKVHELCDNFCH
RYISCLKGKMPIDLVIDERDGSSKSDHEELSGSSTNLADHNPSSWRDHDDATSTHSAGTPGPSS
GGHASQSGDNSSEQGDGLDNSVASPGTGDDDDPDKDKKRQKKRGIFPKVATNIMRAWLFQHLTH
PYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSNRAVSQGAAYSPEGQPMGSFVLD
GQQHMGIRPAGPMSGMGMNMGMDGQWHYM

hide sequence

RefSeq Acc Id:

XP_006234812 ⟸ XM_006234750

- Peptide Label:

isoform X7

- Sequence:

show sequence

MPNIPNATQLGRSQEEWWGNKREYDELPHYGGMDGVGVPASMYGDPHAPRPIPPVHHLNHGPPL
HATQHYGAHAPHPNVMPASMGSAVNDALKRDKDAIYGHPLFPLLALVFEKCELATCTPREPGVA
GGDVCSSDSFNEDIAVFAKQVRAEKPLFSSNPELDNLMIQAIQVLRFHLLELEKVHELCDNFCH
RYISCLKGKMPIDLVIDERDGSSKSDHEELSGSSTNLADHNPSSWRDHDDATSTHSAGTPGPSS
GGHASQSGDNSSEQGDGLDNSVASPGTGDDDDPDKDKKRQKKRGIFPKVATNIMRAWLFQHLTH
PYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSNRAGFLLDPSVSQGAAYSPEGQP
MGSFVLDGQQHMGIRPAGPMSGMGMNMGMDGQWHYM

hide sequence

RefSeq Acc Id:

XP_006234808 ⟸ XM_006234746

- Peptide Label:

isoform X2

- Sequence:

show sequence

MPNIPNATQLGRSQEEWWGNKREYDELPHYGGMDGVGVPASMYGDPHAPRPIPPVHHLNHGPPL
HATQHYGAHAPHPNVMPASMGSAVNDALKRDKDAIYGHPLFPLLALVFEKCELATCTPREPGVA
GGDVCSSDSFNEDIAVFAKQVRAEKPLFSSNPELDNLMIQAIQVLRFHLLELEKVHELCDNFCH
RYISCLKGKMPIDLVIDERDGSSKSDHEELSGSSTNLADHNPSSWRDHDDATSTHSAGTPGPSS
GGHASQSGDNSSEQGDGLDNSVASPGTGDDDDPDKDKKRQKKRGIFPKVATNIMRAWLFQHLTH
PYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSNRAVSQGAAYSPEGQPMGSFVLD
GQQHMGIRPAGLQSMPGDYVSQGGPVGMGMAQPSYTPPQMTPHPTQLRHGPPMHSYLPSHPHHP
AMMMHGGPPTHPGMTMSAQSPTMLNSVDPNVGGQVMDIHAQ

hide sequence

RefSeq Acc Id:

XP_006234811 ⟸ XM_006234749

- Peptide Label:

isoform X5

- Sequence:

show sequence

MAQRYDELPHYGGMDGVGVPASMYGDPHAPRPIPPVHHLNHGPPLHATQHYGAHAPHPNVMPAS
MGSAVNDALKRDKDAIYGHPLFPLLALVFEKCELATCTPREPGVAGGDVCSSDSFNEDIAVFAK
QVRAEKPLFSSNPELDNLMIQAIQVLRFHLLELEKVHELCDNFCHRYISCLKGKMPIDLVIDER
DGSSKSDHEELSGSSTNLADHNPSSWRDHDDATSTHSAGTPGPSSGGHASQSGDNSSEQGDGLD
NSVASPGTGDDDDPDKDKKRQKKRGIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTI
LQVNNWFINARRRIVQPMIDQSNRAVSQGAAYSPEGQPMGSFVLDGQQHMGIRPAGLQSMPGDY
VSQGGPVGMGMAQPSYTPPQMTPHPTQLRHGPPMHSYLPSHPHHPAMMMHGGPPTHPGMTMSAQ
SPTMLNSVDPNVGGQVMDIHAQ

hide sequence

RefSeq Acc Id:	XP_006234816 ⟸ XM_006234754
- Peptide Label:	isoform X11
- UniProtKB:	A0A0G2JT27 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAQRYDELPHYGGMDGVGVPASMYGDPHAPRPIPPVHHLNHGPPLHATQHYGAHAPHPNVMPAS MGSAVNDALKRDKDAIYGHPLFPLLALVFEKCELATCTPREPGVAGGDVCSSDSFNEDIAVFAK QVRAEKPLFSSNPELDNLMIQAIQVLRFHLLELEKVHELCDNFCHRYISCLKGKMPIDLVIDER DGSSKSDHEELSGSSTNLADHNPSSWRDHDDATSTHSAGTPGPSSGGHASQSGDNSSEQGDGLD NSVASPGTGDDDDPDKDKKRQKKRGIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTI LQVNNWFINARRRIVQPMIDQSNRAVSQGAAYSPEGQPMGSFVLDGQQHMGIRPAGPMSGMGMN MGMDGQWHYM hide sequence

RefSeq Acc Id:

XP_006234809 ⟸ XM_006234747

- Peptide Label:

isoform X3

- Sequence:

show sequence

MAQRYDELPHYGGMDGVGVPASMYGDPHAPRPIPPVHHLNHGPPLHATQHYGAHAPHPNVMPAS
MGSAVNDALKRDKDAIYGHPLFPLLALVFEKCELATCTPREPGVAGGDVCSSDSFNEDIAVFAK
QVRAEKPLFSSNPELDNLMIQAIQVLRFHLLELEKVHELCDNFCHRYISCLKGKMPIDLVIDER
DGSSKSDHEELSGSSTNLADHNPSSWRDHDDATSTHSAGTPGPSSGGHASQSGDNSSEQGDGLD
NSVASPGTGDDDDPDKDKKRQKKRGIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTI
LQVNNWFINARRRIVQPMIDQSNRAGFLLDPSVSQGAAYSPEGQPMGSFVLDGQQHMGIRPAGL
QSMPGDYVSQGGPVGMGMAQPSYTPPQMTPHPTQLRHGPPMHSYLPSHPHHPAMMMHGGPPTHP
GMTMSAQSPTMLNSVDPNVGGQVMDIHAQ

hide sequence

RefSeq Acc Id:

XP_006234814 ⟸ XM_006234752

- Peptide Label:

isoform X9

- Sequence:

show sequence

MAQRYDELPHYGGMDGVGVPASMYGDPHAPRPIPPVHHLNHGPPLHATQHYGAHAPHPNVMPAS
MGSAVNDALKRDKDAIYGHPLFPLLALVFEKCELATCTPREPGVAGGDVCSSDSFNEDIAVFAK
QVRAEKPLFSSNPELDNLMIQAIQVLRFHLLELEKVHELCDNFCHRYISCLKGKMPIDLVIDER
DGSSKSDHEELSGSSTNLADHNPSSWRDHDDATSTHSAGTPGPSSGGHASQSGDNSSEQGDGLD
NSVASPGTGDDDDPDKDKKRQKKRGIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTI
LQVNNWFINARRRIVQPMIDQSNRAGFLLDPSVSQGAAYSPEGQPMGSFVLDGQQHMGIRPAGP
MSGMGMNMGMDGQWHYM

hide sequence

RefSeq Acc Id:

XP_006234817 ⟸ XM_006234755

- Peptide Label:

isoform X12

- Sequence:

show sequence

MFLYDELPHYGGMDGVGVPASMYGDPHAPRPIPPVHHLNHGPPLHATQHYGAHAPHPNVMPASM
GSAVNDALKRDKDAIYGHPLFPLLALVFEKCELATCTPREPGVAGGDVCSSDSFNEDIAVFAKQ
VRAEKPLFSSNPELDNLMIQAIQVLRFHLLELEKVHELCDNFCHRYISCLKGKMPIDLVIDERD
GSSKSDHEELSGSSTNLADHNPSSWRDHDDATSTHSAGTPGPSSGGHASQSGDNSSEQGDGLDN
SVASPGTGDDDDPDKDKKRQKKRGIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTIL
QVNNWFINARRRIVQPMIDQSNRAVSQGAAYSPEGQPMGSFVLDGQQHMGIRPAGPMSGMGMNM
GMDGQWHYM

hide sequence

RefSeq Acc Id:

XP_006234815 ⟸ XM_006234753

- Peptide Label:

isoform X10

- Sequence:

show sequence

MFLYDELPHYGGMDGVGVPASMYGDPHAPRPIPPVHHLNHGPPLHATQHYGAHAPHPNVMPASM
GSAVNDALKRDKDAIYGHPLFPLLALVFEKCELATCTPREPGVAGGDVCSSDSFNEDIAVFAKQ
VRAEKPLFSSNPELDNLMIQAIQVLRFHLLELEKVHELCDNFCHRYISCLKGKMPIDLVIDERD
GSSKSDHEELSGSSTNLADHNPSSWRDHDDATSTHSAGTPGPSSGGHASQSGDNSSEQGDGLDN
SVASPGTGDDDDPDKDKKRQKKRGIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTIL
QVNNWFINARRRIVQPMIDQSNRAGFLLDPSVSQGAAYSPEGQPMGSFVLDGQQHMGIRPAGPM
SGMGMNMGMDGQWHYM

hide sequence

RefSeq Acc Id:

XP_006234810 ⟸ XM_006234748

- Peptide Label:

isoform X4

- Sequence:

show sequence

MFLYDELPHYGGMDGVGVPASMYGDPHAPRPIPPVHHLNHGPPLHATQHYGAHAPHPNVMPASM
GSAVNDALKRDKDAIYGHPLFPLLALVFEKCELATCTPREPGVAGGDVCSSDSFNEDIAVFAKQ
VRAEKPLFSSNPELDNLMIQAIQVLRFHLLELEKVHELCDNFCHRYISCLKGKMPIDLVIDERD
GSSKSDHEELSGSSTNLADHNPSSWRDHDDATSTHSAGTPGPSSGGHASQSGDNSSEQGDGLDN
SVASPGTGDDDDPDKDKKRQKKRGIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTIL
QVNNWFINARRRIVQPMIDQSNRAGFLLDPSVSQGAAYSPEGQPMGSFVLDGQQHMGIRPAGLQ
SMPGDYVSQGGPVGMGMAQPSYTPPQMTPHPTQLRHGPPMHSYLPSHPHHPAMMMHGGPPTHPG
MTMSAQSPTMLNSVDPNVGGQVMDIHAQ

hide sequence

RefSeq Acc Id:

ENSRNOP00000068546 ⟸ ENSRNOT00000077091

RefSeq Acc Id:

ENSRNOP00000047254 ⟸ ENSRNOT00000051638

RefSeq Acc Id:	XP_038960864 ⟸ XM_039104936
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038960865 ⟸ XM_039104937
- Peptide Label:	isoform X6

RefSeq Acc Id:

ENSRNOP00000093627 ⟸ ENSRNOT00000098248

Protein Domains

Homeobox

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

ACI/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

ACI/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN-Lx/CubMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/NHsdMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/NHsdMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/SsN (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/SsN (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BUF/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BXH2/CubMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BXH3/CubMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

Buf/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

DA/OlaHsd (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Envigo
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/DuCrl (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/NCrl (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

F344/Stm (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FHH/EurMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FHH/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FXLE16/Stm (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FXLE18/Stm (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

GH/OmrMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/FarMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

GK/Ox (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

HXB10/IpcvMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB2/IpcvMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB20/IpcvMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB31/IpcvMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB4/IpcvMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LE/Stm (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LE/Stm (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEW/Crl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEXF10A/StmMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF11/Stm (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF1A/Stm (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF1C/Stm (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF2B/Stm (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF3/Stm (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF4/Stm (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LH/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrcAek (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LL/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrcAek (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LN/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrcAek (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

M520/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

M520/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

M520/NRrrcMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

MHS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

MR/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MWF/Hsd (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

PVG/Seac (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SBH/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/OlalpcvMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SHRSP/A3NCrl (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SHRSP/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Envigo
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/RijCrl (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WN/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Damaging Variants

Assembly: Rnor_5.0

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain
3	114126094	114126095	G	A	snv	SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), LH/MavRrrc (KNAW), SR/JrHsd (KNAW), LN/MavRrrc (KNAW), SS/Jr (KNAW), SS/JrHsdMcwi (KNAW), LL/MavRrrc (KNAW)

Assembly: mRatBN7.2

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain
3	102744277	102744278	G	A	snv	LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), SS/JrHsdMcwi (2019), SR/JrHsd (2020), LN/MavRrrcAek (2020)

Assembly: Rnor_6.0

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain
3	107561544	107561545	G	A	snv	SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), LH/MavRrrc (RGD), LN/MavRrrc (RGD), LL/MavRrrc (RGD), SR/JrHsd (RGD), SS/JrHsdMcwi (2019), SS/JrHsdMcwi (RGD), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), SR/JrHsd (2020), SS/Jr (RGD)

Assembly: RGSC_v3.4

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain
3	101917313	101917314	G	A	snv	SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), SS/JrHsdMcwi (MDC), LH/MavRrrc (ICL), SS/JrHsdMcwi (ICL), LN/MavRrrc (ICL), SR/JrHsd (ICL), SS/Jr (ICL), LL/MavRrrc (ICL)

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1305198	AgrOrtholog
Ensembl Genes	ENSRNOG00000004730	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000047254	ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOP00000068546	ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOP00000093627	ENTREZGENE
Ensembl Transcript	ENSRNOT00000051638	ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOT00000077091	ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOT00000098248	ENTREZGENE
InterPro	Homeobox_KN_domain	UniProtKB/TrEMBL
	Homeodomain	UniProtKB/TrEMBL
	Homeodomain-like	UniProtKB/TrEMBL
	PKNOX/Meis_N	UniProtKB/TrEMBL
KEGG Report	rno:311311	UniProtKB/TrEMBL
NCBI Gene	311311	ENTREZGENE
Pfam	Homeobox_KN	UniProtKB/TrEMBL
	Meis_PKNOX_N	UniProtKB/TrEMBL
PhenoGen	Meis2	PhenoGen
PROSITE	HOMEOBOX_2	UniProtKB/TrEMBL
SMART	HOX	UniProtKB/TrEMBL
Superfamily-SCOP	Homeodomain_like	UniProtKB/TrEMBL
UniProt	A0A0G2JT27	ENTREZGENE, UniProtKB/TrEMBL
	D4A2T5	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2009-03-18	Meis2	Meis homeobox 2	Meis2	Meis1, myeloid ecotropic viral integration site 1 homolog 2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Meis2	Meis1, myeloid ecotropic viral integration site 1 homolog 2	Meis2_predicted	Meis1, myeloid ecotropic viral integration site 1 homolog 2 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Meis2_predicted	Meis1, myeloid ecotropic viral integration site 1 homolog 2 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar

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