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Gene: Sprtn (SprT-like N-terminal domain) Rattus norvegicus
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Symbol: Sprtn
Name: SprT-like N-terminal domain
Description: Predicted to have K63-linked polyubiquitin modification-dependent protein binding activity and ubiquitin binding activity. Predicted to be involved in positive regulation of protein ubiquitination; response to UV; and translesion synthesis. Predicted to localize to the nuclear speck. Human ortholog(s) of this gene implicated in Ruijs-Aalfs syndrome. Orthologous to human SPRTN (SprT-like N-terminal domain); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; furan.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: hypothetical protein LOC292101; LOC292101; protein with SprT-like domain at the N terminus; RGD1559496; similar to hypothetical protein; spartan; sprT-like domain-containing protein Spartan; uncharacterized protein LOC292101
Orthologs:
Homo sapiens (human) : SPRTN (SprT-like N-terminal domain)  HGNC  Alliance
Mus musculus (house mouse) : Sprtn (SprT-like N-terminal domain)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Sprtn (SprT-like N-terminal domain)
Pan paniscus (bonobo/pygmy chimpanzee) : SPRTN (SprT-like N-terminal domain)
Canis lupus familiaris (dog) : SPRTN (SprT-like N-terminal domain)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Sprtn (SprT-like N-terminal domain)
Sus scrofa (pig) : SPRTN (SprT-like N-terminal domain)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01957,649,901 - 57,657,158 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1957,650,163 - 57,654,864 (+)Ensembl
Rnor_5.01968,363,163 - 68,370,397 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41955,069,130 - 55,073,670 (+)NCBIRGSC3.4rn4RGSC3.4
Celera1952,225,035 - 52,229,575 (+)NCBICelera
Cytogenetic Map19q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Sprtn
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1559496
Created: 2006-02-09
Species: Rattus norvegicus
Last Modified: 2019-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.