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Gene: Atxn1 (ataxin 1) Rattus norvegicus
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Symbol: Atxn1
Name: ataxin 1
Description: Predicted to have several functions, including identical protein binding activity; protein C-terminus binding activity; and single-stranded RNA binding activity. Predicted to be involved in several processes, including learning or memory; nervous system development; and regulation of transcription by RNA polymerase II. Predicted to localize to the cytosol; nucleus; and protein-containing complex. Human ortholog(s) of this gene implicated in spinocerebellar ataxia type 1. Orthologous to human ATXN1 (ataxin 1); INTERACTS WITH aflatoxin B1; ammonium chloride; atrazine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: ataxin-1; RNSCA1; Sca1; spinocerebellar ataxia 1; spinocerebellar ataxia 1 homolog (human); Spinocerebellar ataxia type 1; spinocerebellar ataxia type 1 protein homolog
Orthologs:
Homo sapiens (human) : ATXN1 (ataxin 1)  HGNC  Alliance
Mus musculus (house mouse) : Atxn1 (ataxin 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Atxn1 (ataxin 1)
Pan paniscus (bonobo/pygmy chimpanzee) : ATXN1 (ataxin 1)
Canis lupus familiaris (dog) : ATXN1 (ataxin 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Atxn1 (ataxin 1)
Sus scrofa (pig) : ATXN1 (ataxin 1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01719,160,986 - 19,533,814 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1719,249,952 - 19,533,814 (+)Ensembl
Rnor_5.01721,544,083 - 21,559,271 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.01721,184,036 - 21,473,347 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41724,719,383 - 25,138,270 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.13103,267,365 - 103,268,238 (+)NCBI
Celera1718,442,710 - 18,844,739 (+)NCBICelera
Cytogenetic Map17p14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
RGD Curation Notes
 
More on Atxn1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 3624
Created: 2000-05-25
Species: Rattus norvegicus
Last Modified: 2019-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.