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Gene: Irx6 (iroquois homeobox 6) Rattus norvegicus
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Symbol: Irx6
Name: iroquois homeobox 6
RGD ID: 1564830
Description: Predicted to have DNA-binding transcription activator activity, RNA polymerase II-specific; DNA-binding transcription repressor activity, RNA polymerase II-specific; and sequence-specific DNA binding activity. Predicted to be involved in several processes, including detection of visible light; regulation of transcription, DNA-templated; and retina morphogenesis in camera-type eye. Predicted to localize to nucleus. Orthologous to human IRX6 (iroquois homeobox 6); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; bisphenol A.
Type: protein-coding
RefSeq Status: INFERRED
Also known as: Iroquois related homeobox 6; Iroquois related homeobox 6 (Drosophila); iroquois-class homeodomain protein IRX-6; LOC307715; RGD1564830; similar to iroquois homeobox protein 6
Orthologs:
Homo sapiens (human) : IRX6 (iroquois homeobox 6)  HGNC  Alliance
Mus musculus (house mouse) : Irx6 (Iroquois homeobox 6)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Irx6 (iroquois homeobox 6)
Pan paniscus (bonobo/pygmy chimpanzee) : IRX6 (iroquois homeobox 6)
Canis lupus familiaris (dog) : IRX6 (iroquois homeobox 6)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Irx6 (iroquois homeobox 6)
Sus scrofa (pig) : IRX6 (iroquois homeobox 6)
Chlorocebus sabaeus (African green monkey) : IRX6 (iroquois homeobox 6)
Heterocephalus glaber (naked mole-rat) : Irx6 (iroquois homeobox 6)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01915,726,633 - 15,733,442 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1915,727,514 - 15,733,412 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01926,812,637 - 26,819,392 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41915,433,142 - 15,439,105 (-)NCBIRGSC3.4rn4RGSC3.4
Celera1914,246,025 - 14,251,980 (-)NCBICelera
Cytogenetic Map19p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References - curated
References - uncurated

Genomics

Comparative Map Data
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Irx6
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1564830
Created: 2006-02-09
Species: Rattus norvegicus
Last Modified: 2020-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.