Sdf4 (stromal cell derived factor 4) - Rat Genome Database

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Gene: Sdf4 (stromal cell derived factor 4) Rattus norvegicus
Analyze
Symbol: Sdf4
Name: stromal cell derived factor 4
RGD ID: 621521
Description: Enables identical protein binding activity. Involved in several processes, including UV protection; response to ethanol; and zymogen granule exocytosis. Located in late endosome and plasma membrane. Orthologous to human SDF4 (stromal cell derived factor 4); INTERACTS WITH (+)-schisandrin B; 17beta-estradiol; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: 45 kDa calcium-binding protein; cab45; MGC93237; SDF-4; stromal cell-derived factor 4
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85171,868,591 - 171,885,827 (+)NCBIGRCr8
mRatBN7.25166,586,581 - 166,606,661 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5166,586,390 - 166,604,521 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5169,290,258 - 169,307,133 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05171,111,682 - 171,128,555 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05171,074,216 - 171,091,087 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05173,425,922 - 173,444,478 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5173,425,907 - 173,444,620 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05176,901,543 - 176,918,497 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45172,836,094 - 172,853,044 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15172,850,036 - 172,863,284 (+)NCBI
Celera5164,787,377 - 164,804,459 (+)NCBICelera
Cytogenetic Map5q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IDA)
endoplasmic reticulum  (IBA)
Golgi apparatus  (ISO)
Golgi lumen  (IEA,ISO,ISS)
late endosome  (IDA,IEA,ISO,ISS)
plasma membrane  (IDA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. A cytosolic splice variant of Cab45 interacts with Munc18b and impacts on amylase secretion by pancreatic acini. Lam PP, etal., Mol Biol Cell. 2007 Jul;18(7):2473-80. Epub 2007 Apr 18.
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
5. GOA pipeline RGD automated data pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. The ethanol response gene Cab45 can modulate the impairment elicited by ethanol and ultraviolet in PC12 cells. Zhu Y, etal., J Genet Genomics. 2008 Mar;35(3):153-61. doi: 10.1016/S1673-8527(08)60021-1.
Additional References at PubMed
PMID:8609160   PMID:12477932   PMID:19199708   PMID:19487699   PMID:19946888  


Genomics

Comparative Map Data
Sdf4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85171,868,591 - 171,885,827 (+)NCBIGRCr8
mRatBN7.25166,586,581 - 166,606,661 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5166,586,390 - 166,604,521 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5169,290,258 - 169,307,133 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05171,111,682 - 171,128,555 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05171,074,216 - 171,091,087 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05173,425,922 - 173,444,478 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5173,425,907 - 173,444,620 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05176,901,543 - 176,918,497 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45172,836,094 - 172,853,044 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15172,850,036 - 172,863,284 (+)NCBI
Celera5164,787,377 - 164,804,459 (+)NCBICelera
Cytogenetic Map5q36NCBI
SDF4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811,216,931 - 1,232,001 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11,216,931 - 1,232,031 (-)EnsemblGRCh38hg38GRCh38
GRCh3711,152,311 - 1,167,381 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3611,142,151 - 1,157,274 (-)NCBINCBI36Build 36hg18NCBI36
Build 3411,192,234 - 1,207,334NCBI
Celera11,416,207 - 1,431,366 (+)NCBICelera
Cytogenetic Map1p36.33NCBI
HuRef1423,986 - 439,143 (-)NCBIHuRef
CHM1_111,138,762 - 1,153,919 (-)NCBICHM1_1
T2T-CHM13v2.01645,388 - 660,462 (-)NCBIT2T-CHM13v2.0
Sdf4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394156,077,300 - 156,098,067 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4156,077,329 - 156,098,067 (+)EnsemblGRCm39 Ensembl
GRCm384155,992,843 - 156,013,610 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4155,992,872 - 156,013,610 (+)EnsemblGRCm38mm10GRCm38
MGSCv374155,367,023 - 155,387,719 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364154,836,714 - 154,857,410 (+)NCBIMGSCv36mm8
Celera4158,256,076 - 158,276,364 (+)NCBICelera
Cytogenetic Map4E2NCBI
cM Map487.66NCBI
Sdf4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554869,555,364 - 9,567,340 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554869,555,773 - 9,565,310 (+)NCBIChiLan1.0ChiLan1.0
SDF4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21226,993,607 - 227,009,286 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11225,690,329 - 225,705,966 (+)NCBINHGRI_mPanPan1
PanPan1.111,173,925 - 1,190,390 (-)NCBIpanpan1.1PanPan1.1panPan2
SDF4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1556,407,506 - 56,421,515 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl556,407,807 - 56,421,430 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha556,484,483 - 56,498,492 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0556,610,405 - 56,624,414 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl556,610,409 - 56,624,362 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1556,601,139 - 56,615,150 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0556,493,416 - 56,507,429 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0556,883,417 - 56,897,430 (-)NCBIUU_Cfam_GSD_1.0
Sdf4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505827,567,647 - 27,576,851 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367371,891,415 - 1,898,904 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367371,889,123 - 1,898,303 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SDF4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl663,529,853 - 63,544,944 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1663,529,853 - 63,539,979 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2657,999,040 - 58,008,413 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SDF4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120130,212,962 - 130,228,831 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20130,216,225 - 130,228,962 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605434,781,559 - 34,797,557 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sdf4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248188,365,359 - 8,371,386 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248188,362,107 - 8,371,565 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Sdf4
94 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:193
Count of miRNA genes:149
Interacting mature miRNAs:163
Transcripts:ENSRNOT00000027215
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631562Apr2Acute phase response QTL 23.7blood murinoglobulin 1 amount (VT:0010597)plasma murinoglobulin 1 level (CMO:0001931)5135927956166875058Rat
738018Anxrr4Anxiety related response QTL 45.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)5130130159166875058Rat
7794791Mcs33Mammary carcinoma susceptibility QTL 331.93mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)5131345754166875058Rat
8552908Pigfal4Plasma insulin-like growth factor 1 level QTL 46.6blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5128506074166875058Rat
631272Lanf1Left ventricular atrial natriuretic factor QTL 112heart left ventricle natriuretic peptide A amount (VT:0010596)heart left ventricle natriuretic peptide A level (CMO:0002165)5151113452166875058Rat
634349Bp139Blood pressure QTL 1390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5128924607166875058Rat
8694169Bw148Body weight QTL 14850.001body mass (VT:0001259)body weight gain (CMO:0000420)5128506074166875058Rat
1331721Bp210Blood pressure QTL 2103.413arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)5143069996166846814Rat
10053720Scort26Serum corticosterone level QTL 262.060.0147blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)5124965598166875058Rat
1302790Scl20Serum cholesterol level QTL 206.40.0001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)582394392166664054Rat
1549904Neuinf1Neuroinflammation QTL 130nervous system integrity trait (VT:0010566)blood T lymphocyte count (CMO:0000110)5154828214166875058Rat
1598819Bp292Blood pressure QTL 2924.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5127798274166875058Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
61444Strs2Sensitivity to stroke QTL 24.7cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)5135929696166875058Rat
724525Bp147Blood pressure QTL 1474.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5126424772166875058Rat
1641920Colcs1Colorectal carcinoma susceptibility QTL 12.990.0055intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)5121846814166846814Rat
1598861Cm64Cardiac mass QTL 642.9heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5127798274166875058Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 57 41 19 41 8 11 74 35 41 11 8
Low
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_130412 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006239516 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109193 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109194 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287105 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287106 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC126156 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF405545 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC086996 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473968 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219323 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225623 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231393 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232476 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000027215   ⟹   ENSRNOP00000027215
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5166,586,872 - 166,603,600 (+)Ensembl
Rnor_6.0 Ensembl5173,425,907 - 173,444,620 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000096382   ⟹   ENSRNOP00000089413
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5166,586,390 - 166,604,521 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000097892   ⟹   ENSRNOP00000096524
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5166,586,390 - 166,596,025 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000106007   ⟹   ENSRNOP00000095500
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5166,586,390 - 166,603,602 (+)Ensembl
RefSeq Acc Id: NM_130412   ⟹   NP_569096
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85171,868,875 - 171,885,827 (+)NCBI
mRatBN7.25166,586,649 - 166,603,602 (+)NCBI
Rnor_6.05173,425,922 - 173,444,477 (+)NCBI
Rnor_5.05176,901,543 - 176,918,497 (+)NCBI
RGSC_v3.45172,836,094 - 172,853,044 (+)RGD
Celera5164,787,377 - 164,804,459 (+)RGD
Sequence:
RefSeq Acc Id: XM_006239516   ⟹   XP_006239578
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85171,869,072 - 171,885,827 (+)NCBI
mRatBN7.25166,586,841 - 166,606,661 (+)NCBI
Rnor_6.05173,426,129 - 173,444,478 (+)NCBI
Rnor_5.05176,901,543 - 176,918,497 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039109193   ⟹   XP_038965121
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85171,869,003 - 171,885,827 (+)NCBI
mRatBN7.25166,586,839 - 166,606,661 (+)NCBI
RefSeq Acc Id: XM_039109194   ⟹   XP_038965122
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85171,868,823 - 171,885,827 (+)NCBI
mRatBN7.25166,586,581 - 166,606,661 (+)NCBI
RefSeq Acc Id: XM_063287105   ⟹   XP_063143175
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85171,868,593 - 171,885,827 (+)NCBI
RefSeq Acc Id: XM_063287106   ⟹   XP_063143176
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85171,868,591 - 171,885,827 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_569096   ⟸   NM_130412
- UniProtKB: Q5PQW3 (UniProtKB/Swiss-Prot),   Q91ZS3 (UniProtKB/Swiss-Prot),   A0A8I6GL63 (UniProtKB/TrEMBL),   A6IUU8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006239578   ⟸   XM_006239516
- Peptide Label: isoform X3
- UniProtKB: Q91ZS3 (UniProtKB/Swiss-Prot),   Q5PQW3 (UniProtKB/Swiss-Prot),   A0A0G2JSR9 (UniProtKB/TrEMBL),   A6IUV0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000027215   ⟸   ENSRNOT00000027215
RefSeq Acc Id: XP_038965122   ⟸   XM_039109194
- Peptide Label: isoform X2
- UniProtKB: Q91ZS3 (UniProtKB/Swiss-Prot),   Q5PQW3 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_038965121   ⟸   XM_039109193
- Peptide Label: isoform X1
- UniProtKB: Q91ZS3 (UniProtKB/Swiss-Prot),   Q5PQW3 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: ENSRNOP00000089413   ⟸   ENSRNOT00000096382
RefSeq Acc Id: ENSRNOP00000096524   ⟸   ENSRNOT00000097892
RefSeq Acc Id: ENSRNOP00000095500   ⟸   ENSRNOT00000106007
RefSeq Acc Id: XP_063143176   ⟸   XM_063287106
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063143175   ⟸   XM_063287105
- Peptide Label: isoform X4
Protein Domains
EF-hand

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q91ZS3-F1-model_v2 AlphaFold Q91ZS3 1-361 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694341
Promoter ID:EPDNEW_R4865
Type:initiation region
Name:Sdf4_1
Description:stromal cell derived factor 4
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.05173,425,915 - 173,425,975EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621521 AgrOrtholog
BioCyc Gene G2FUF-38879 BioCyc
Ensembl Genes ENSRNOG00000019981 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000027215.7 UniProtKB/TrEMBL
  ENSRNOT00000096382.1 UniProtKB/TrEMBL
  ENSRNOT00000097892.1 UniProtKB/TrEMBL
  ENSRNOT00000106007 ENTREZGENE
  ENSRNOT00000106007.1 UniProtKB/TrEMBL
Gene3D-CATH EF-hand UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7192272 IMAGE-MGC_LOAD
InterPro CAB45 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EF-hand-dom_pair UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EF_Hand_1_Ca_BS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EF_hand_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:155173 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:93237 IMAGE-MGC_LOAD
NCBI Gene 155173 ENTREZGENE
PANTHER 45 KDA CALCIUM-BINDING PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RETICULOCALBIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam EF-hand_5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EF-hand_7 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Sdf4 PhenoGen
PROSITE EF_HAND_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EF_HAND_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000019981 RatGTEx
SMART EFh UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF47473 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2JSR9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A852_RAT UniProtKB/TrEMBL
  A0A8I6ALY7_RAT UniProtKB/TrEMBL
  A0A8I6GL63 ENTREZGENE, UniProtKB/TrEMBL
  A6IUU8 ENTREZGENE, UniProtKB/TrEMBL
  A6IUU9_RAT UniProtKB/TrEMBL
  A6IUV0 ENTREZGENE, UniProtKB/TrEMBL
  CAB45_RAT UniProtKB/Swiss-Prot
  Q5PQW3 ENTREZGENE
  Q91ZS3 ENTREZGENE
UniProt Secondary Q5PQW3 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-01-20 Sdf4  stromal cell derived factor 4      Symbol and Name status set to approved 1299863 APPROVED
2002-08-07 Sdf4  stromal cell derived factor 4      Symbol and Name status set to provisional 70820 PROVISIONAL