SDF4 (stromal cell derived factor 4)

Gene: SDF4 (stromal cell derived factor 4) Sus scrofa

Analyze

Symbol:

SDF4

Name:

stromal cell derived factor 4

RGD ID:

13939948

Description:

ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN cerebellum development (ortholog); maintenance of synapse structure (ortholog); response to ethanol (ortholog); ASSOCIATED WITH chromosome 1p36 deletion syndrome (ortholog); congenital myasthenic syndrome 8 (ortholog); dilated cardiomyopathy 1LL (ortholog); FOUND IN cytoplasm (ortholog); plasma membrane (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

45 kDa calcium-binding protein

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	63,529,853 - 63,544,944 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	63,529,853 - 63,539,979 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	57,999,040 - 58,008,413 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

chromosome 1p36 deletion syndrome (ISO)

congenital myasthenic syndrome 8 (ISO)

dilated cardiomyopathy 1LL (ISO)

Ehlers-Danlos syndrome spondylodysplastic type 2 (ISO)

genetic disease (ISO)

Goldberg-Shprintzen syndrome (ISO)

immunodeficiency 16 (ISO)

immunodeficiency 38 (ISO)

Joubert syndrome 25 (ISO)

Neurodevelopmental Disorders (ISO)

Peroxisome Biogenesis Disorder, Complementation Group 7 (ISO)

schizophrenia (ISO)

Shprintzen-Goldberg Craniosynostosis (ISO)

spondyloepimetaphyseal dysplasia with joint laxity type 1 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

calcium-ion regulated exocytosis (IBA,IEA)

cerebellum development (ISO)

fat cell differentiation (IEA)

maintenance of synapse structure (ISO)

response to ethanol (ISO)

UV protection (ISO)

zymogen granule exocytosis (ISO)

Cellular Component

cytoplasm (ISO)

endoplasmic reticulum (IBA,IEA)

Golgi apparatus (IEA)

Golgi lumen (IEA)

late endosome (IEA)

plasma membrane (ISO)

Molecular Function

calcium ion binding (IBA,IEA)

identical protein binding (ISO)

metal ion binding (IEA)

protein binding (ISO)

References

Additional References at PubMed

PMID:14681463	PMID:17145712	PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

SDF4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	63,529,853 - 63,544,944 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	63,529,853 - 63,539,979 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	57,999,040 - 58,008,413 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SDF4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	1,216,931 - 1,232,001 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	1,216,931 - 1,232,031 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	1,152,311 - 1,167,381 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	1,142,151 - 1,157,274 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	1,192,234 - 1,207,334	NCBI
Celera	1	1,416,207 - 1,431,366 (+)	NCBI		Celera
Cytogenetic Map	1	p36.33	NCBI
HuRef	1	423,986 - 439,143 (-)	NCBI		HuRef
CHM1_1	1	1,138,762 - 1,153,919 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	645,388 - 660,462 (-)	NCBI		T2T-CHM13v2.0

Sdf4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	156,077,300 - 156,098,067 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	156,077,329 - 156,098,067 (+)	Ensembl		GRCm39 Ensembl
GRCm38	4	155,992,843 - 156,013,610 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	155,992,872 - 156,013,610 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	155,367,023 - 155,387,719 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	154,836,714 - 154,857,410 (+)	NCBI		MGSCv36	mm8
Celera	4	158,256,076 - 158,276,364 (+)	NCBI		Celera
Cytogenetic Map	4	E2	NCBI
cM Map	4	87.66	NCBI

Sdf4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	171,868,591 - 171,885,827 (+)	NCBI		GRCr8
mRatBN7.2	5	166,586,581 - 166,606,661 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	166,586,390 - 166,604,521 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	169,290,258 - 169,307,133 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	171,111,682 - 171,128,555 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	171,074,216 - 171,091,087 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	173,425,922 - 173,444,478 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	173,425,907 - 173,444,620 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	176,901,543 - 176,918,497 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	172,836,094 - 172,853,044 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	5	172,850,036 - 172,863,284 (+)	NCBI
Celera	5	164,787,377 - 164,804,459 (+)	NCBI		Celera
Cytogenetic Map	5	q36	NCBI

Sdf4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955486	9,555,364 - 9,567,340 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955486	9,555,773 - 9,565,310 (+)	NCBI	ChiLan1.0	ChiLan1.0

SDF4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	226,993,607 - 227,009,286 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	225,690,329 - 225,705,966 (+)	NCBI		NHGRI_mPanPan1
PanPan1.1	1	1,173,925 - 1,190,390 (-)	NCBI	panpan1.1	PanPan1.1	panPan2

SDF4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	56,407,506 - 56,421,515 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	56,407,807 - 56,421,430 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	56,484,483 - 56,498,492 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	56,610,405 - 56,624,414 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	56,610,409 - 56,624,362 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	56,601,139 - 56,615,150 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	56,493,416 - 56,507,429 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	56,883,417 - 56,897,430 (-)	NCBI		UU_Cfam_GSD_1.0

Sdf4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	27,567,647 - 27,576,851 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936737	1,891,415 - 1,898,904 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936737	1,889,123 - 1,898,303 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SDF4
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	130,212,962 - 130,228,831 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	130,216,225 - 130,228,962 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666054	34,781,559 - 34,797,557 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Sdf4
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624818	8,365,359 - 8,371,386 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624818	8,362,107 - 8,371,565 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in SDF4
106 total Variants

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	hemolymphoid system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system
High
Medium	8	3	3	5	2	8	2	2	3
Low	2	1				15		1
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003356108	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021097430	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000044	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK345230	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK351231	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK351959	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK389368	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK399152	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FP102596	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01039320	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSSCT00000003699 ⟹ ENSSSCP00000003613

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	6	63,529,854 - 63,539,950 (-)	Ensembl

RefSeq Acc Id:

ENSSSCT00000047591 ⟹ ENSSSCP00000037330

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	6	63,529,853 - 63,544,944 (-)	Ensembl

RefSeq Acc Id:

ENSSSCT00000050956 ⟹ ENSSSCP00000035128

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	6	63,529,853 - 63,537,892 (-)	Ensembl

RefSeq Acc Id:

ENSSSCT00000059915 ⟹ ENSSSCP00000034620

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	6	63,529,855 - 63,539,127 (-)	Ensembl

RefSeq Acc Id:

ENSSSCT00000065513 ⟹ ENSSSCP00000041737

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	6	63,529,859 - 63,539,238 (-)	Ensembl

RefSeq Acc Id:

XM_003356108 ⟹ XP_003356156

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	6	63,529,853 - 63,539,380 (-)	NCBI

Sequence:

show sequence

GTTGTTTGTGAGCGGAGGGGAGGACGCCGAGCTGACCTTCTGACGTCTCCGTGGTTGCTTGGGG
GTTACCCTTTGTACTTCACGTCGTGTAAATAACACGCCCTGTACCACCGGTCGCGCTAGGGAGC
ATTGAGCGTTCGTTGAAGAAGCCAAGCACAGTCTGTTTGGACATGACGTCTGTTTTTATGGCCA
AGCTCCTGGCTGCACGCGCCGGCCGTCCCGCAGCGCAGACCCCTGCGGCCATGGCACCCAGGCT
GGCCCCCCTCGGTGGCCTGGCTGCCCGCTGCCTCTGGCTCCTGGGGGTGGCCCTTCTGATGGAC
GCGTCAGCCCGGCCTGCCAACCACTCGTCTGCTCGAGAGAGAGCGGGCCACAGGGAGGAAGAGG
AGATCCTGCCCCCAGACCACCTGACCGGGGTGAAGCTGGAGATGGACGGGCACCTCAACAAGGA
TTTCCACCAGGAGGTCTTCCTGGGCAAGGACACGGGCGGCTTCGAGGAGGACGCAGAGCCTCGG
AGGAGCCGGCGGAAGCTGATGGTTATCTTCTCCAAGGTGGACCTGAACACGGACAGGAGGATCA
GCGCCAAGGAGATGCAGCGCTGGATCATGGAGAAGACGGCCGAGCACTTCCAGCAGGCCGTCGC
CGAGAGCAAGATGCATTTCAGCGCCGTGGACCCCGATGGCGACGGCCGTGTGTCCTGGGATGAG
TACCGGGTGAAGTTTTTGGCGAGCAAAGGCCACGATGAGAGAGAAATCGCTGATAAGATAAAGA
ATAAGTGGGACCTGAACATCGATGAAGAGACACAGGAAGTCCTGGAGAACCTCAAAGACCGCTG
GTATCAGGCGGACAGTCCCCCCCCGGACCTGCTGCTGACCGAGAAGGAGTTCCTGTCCTTCCTG
CACCCCGAGCACAGCCGTGGCATGCTCCAGTTCATGGCCAAGGAGATCATCCGGGACCTGGACC
AGGATGGTGACAAGAGGCTCTCGCTGCCCGAGTTCATCTCTCTGCCCGCGGGCACCGTGGAGAA
CCAGCAAGGCCAGGACATTGACGACGGCTGGGTGAGGGACAGGAGGAGGGAGTTTGAGGAACTG
ATTGATGCCGACCACGACGGGATCGTGACCATGGCGGAGCTGGAGGACTACATGGACCCCATGA
ACGAGTTCAGTGCCCTCAACGAGGCCAAGCAGATGATCGCCGTCGCCGACGAGAACCAGAACCA
CTACCTGGAGCCTGAGGAGGTGCTCAAGTACAGCGAGTTCTTCACGGGCAGCAAGCTGGTGGAC
TACGCCCGCAGCGTGCACGAGGAGTTCTGACCCCACGCCGCCCCCGCAGCGTGTCGTCCCTCAT
CGTCGCTGCACCATGCTTCTGAGAACTGCAGCCCATCTGCGGAAGCCGCTGCCCCGTCGCCCGC
GCTCACGCACCTCGGGGGGCACCGCAGCTCCTGCTGTTTCCTGGAAAACTGAAAGATGTTTGCA
TTGCTCTGCCGGCCGGGCTGCTCCGCCTGTGGGGGCGGCTGTGACCGCTGCCGGCCCCTCCGTG
TTCGGCCTCCGAGAAAACGTGAACACCCGCGACGAGAATCTCATTAATGTACTTTAAAATACAG
TTGCCTTTTTCTCCTA

hide sequence

RefSeq Acc Id:

XM_021097430 ⟹ XP_020953089

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	6	63,529,853 - 63,539,979 (-)	NCBI

Sequence:

show sequence

TCGCACCGCCCCGTGACCCTCCTCTTCCCGGAAGAAAAATGGCCGCGGCCTAGCGGTGGCCCGT
TGGAGGCGTCTCAGGCGCTCGGGCCCCTCGGCGTATCCTGGGCGCCGAGAAAGAAGCGCTCCTG
GCTGCACGCGCCGGCCGTCCCGCAGCGCAGACCCCTGCGGCCATGGCACCCAGGCTGGCCCCCC
TCGGTGGCCTGGCTGCCCGCTGCCTCTGGCTCCTGGGGGTGGCCCTTCTGATGGACGCGTCAGC
CCGGCCTGCCAACCACTCGTCTGCTCGAGAGAGAGCGGGCCACAGGGAGGAAGAGGAGATCCTG
CCCCCAGACCACCTGACCGGGGTGAAGCTGGAGATGGACGGGCACCTCAACAAGGATTTCCACC
AGGAGGTCTTCCTGGGCAAGGACACGGGCGGCTTCGAGGAGGACGCAGAGCCTCGGAGGAGCCG
GCGGAAGCTGATGGTTATCTTCTCCAAGGTGGACCTGAACACGGACAGGAGGATCAGCGCCAAG
GAGATGCAGCGCTGGATCATGGAGAAGACGGCCGAGCACTTCCAGCAGGCCGTCGCCGAGAGCA
AGATGCATTTCAGCGCCGTGGACCCCGATGGCGACGGCCGTGTGTCCTGGGATGAGTACCGGGT
GAAGTTTTTGGCGAGCAAAGGCCACGATGAGAGAGAAATCGCTGATAAGATAAAGAATAAGTGG
GACCTGAACATCGATGAAGAGACACAGGAAGTCCTGGAGAACCTCAAAGACCGCTGGTATCAGG
CGGACAGTCCCCCCCCGGACCTGCTGCTGACCGAGAAGGAGTTCCTGTCCTTCCTGCACCCCGA
GCACAGCCGTGGCATGCTCCAGTTCATGGCCAAGGAGATCATCCGGGACCTGGACCAGGATGGT
GACAAGAGGCTCTCGCTGCCCGAGTTCATCTCTCTGCCCGCGGGCACCGTGGAGAACCAGCAAG
GCCAGGACATTGACGACGGCTGGGTGAGGGACAGGAGGAGGGAGTTTGAGGAACTGATTGATGC
CGACCACGACGGGATCGTGACCATGGCGGAGCTGGAGGACTACATGGACCCCATGAACGAGTTC
AGTGCCCTCAACGAGGCCAAGCAGATGATCGCCGTCGCCGACGAGAACCAGAACCACTACCTGG
AGCCTGAGGAGGTGCTCAAGTACAGCGAGTTCTTCACGGGCAGCAAGCTGGTGGACTACGCCCG
CAGCGTGCACGAGGAGTTCTGACCCCACGCCGCCCCCGCAGCGTGTCGTCCCTCATCGTCGCTG
CACCATGCTTCTGAGAACTGCAGCCCATCTGCGGAAGCCGCTGCCCCGTCGCCCGCGCTCACGC
ACCTCGGGGGGCACCGCAGCTCCTGCTGTTTCCTGGAAAACTGAAAGATGTTTGCATTGCTCTG
CCGGCCGGGCTGCTCCGCCTGTGGGGGCGGCTGTGACCGCTGCCGGCCCCTCCGTGTTCGGCCT
CCGAGAAAACGTGAACACCCGCGACGAGAATCTCATTAATGTACTTTAAAATACAGTTGCCTTT
TTCTCCTA

hide sequence

Protein Sequences


Protein RefSeqs	XP_003356156	(Get FASTA)	NCBI Sequence Viewer
	XP_020953089	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000003613.4
	ENSSSCP00000034620.2
	ENSSSCP00000035128
	ENSSSCP00000035128.2
	ENSSSCP00000037330.2
	ENSSSCP00000041737
	ENSSSCP00000041737.1
	ENSSSCP00015026871.1
	ENSSSCP00015026932.1
	ENSSSCP00015026982.1
	ENSSSCP00015027003.1
	ENSSSCP00015027025.1
	ENSSSCP00015027045.1
	ENSSSCP00015027081.1
	ENSSSCP00015027124.1
	ENSSSCP00025034497.1
	ENSSSCP00025034557.1
	ENSSSCP00025034631.1
	ENSSSCP00025034699.1
	ENSSSCP00025034762.1
	ENSSSCP00025034823.1
	ENSSSCP00025034894.1
	ENSSSCP00030004287.1
	ENSSSCP00030004298.1
	ENSSSCP00030004304.1
	ENSSSCP00030004307.1
	ENSSSCP00035025971.1
	ENSSSCP00035025982.1
	ENSSSCP00035025988.1
	ENSSSCP00035025991.1
	ENSSSCP00035025995.1
	ENSSSCP00040003617.1
	ENSSSCP00040003624.1
	ENSSSCP00040003632.1
	ENSSSCP00040003634.1
	ENSSSCP00040003637.1
	ENSSSCP00040003639.1
	ENSSSCP00045041398.1
	ENSSSCP00045041418.1
	ENSSSCP00045041532.1
	ENSSSCP00045041595.1
	ENSSSCP00045041623.1
	ENSSSCP00045041652.1
	ENSSSCP00045041701.1
	ENSSSCP00050015897.1
	ENSSSCP00050015904.1
	ENSSSCP00050015909.1
	ENSSSCP00050015913.1
	ENSSSCP00055027744.1
	ENSSSCP00055027801.1
	ENSSSCP00055027866.1
	ENSSSCP00055027927.1
	ENSSSCP00055027955.1
	ENSSSCP00055028030.1
	ENSSSCP00055028084.1
	ENSSSCP00055028176.1
	ENSSSCP00060007341.1
	ENSSSCP00060007345.1
	ENSSSCP00060007361.1
	ENSSSCP00060007372.1
	ENSSSCP00060007378.1
	ENSSSCP00060007383.1
	ENSSSCP00060007388.1
	ENSSSCP00065046478.1
	ENSSSCP00065046480.1
	ENSSSCP00065046486.1
	ENSSSCP00065046489.1
	ENSSSCP00065046491.1
	ENSSSCP00070050777.1
	ENSSSCP00070050778.1
	ENSSSCP00070050779.1
	ENSSSCP00070050780.1

RefSeq Acc Id:	XP_020953089 ⟸ XM_021097430
- Peptide Label:	isoform X2
- UniProtKB:	A0A481D2B2 (UniProtKB/TrEMBL), A0A8D1J6I9 (UniProtKB/TrEMBL), A0A4X1W3C3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAPRLAPLGGLAARCLWLLGVALLMDASARPANHSSARERAGHREEEEILPPDHLTGVKLEMDG HLNKDFHQEVFLGKDTGGFEEDAEPRRSRRKLMVIFSKVDLNTDRRISAKEMQRWIMEKTAEHF QQAVAESKMHFSAVDPDGDGRVSWDEYRVKFLASKGHDEREIADKIKNKWDLNIDEETQEVLEN LKDRWYQADSPPPDLLLTEKEFLSFLHPEHSRGMLQFMAKEIIRDLDQDGDKRLSLPEFISLPA GTVENQQGQDIDDGWVRDRRREFEELIDADHDGIVTMAELEDYMDPMNEFSALNEAKQMIAVAD ENQNHYLEPEEVLKYSEFFTGSKLVDYARSVHEEF hide sequence

RefSeq Acc Id:	XP_003356156 ⟸ XM_003356108
- Peptide Label:	isoform X1
- UniProtKB:	A0A287ACL1 (UniProtKB/TrEMBL), A0A4X1W9A1 (UniProtKB/TrEMBL), A0A286ZSR6 (UniProtKB/TrEMBL), A0A8D1CWC0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTSVFMAKLLAARAGRPAAQTPAAMAPRLAPLGGLAARCLWLLGVALLMDASARPANHSSARER AGHREEEEILPPDHLTGVKLEMDGHLNKDFHQEVFLGKDTGGFEEDAEPRRSRRKLMVIFSKVD LNTDRRISAKEMQRWIMEKTAEHFQQAVAESKMHFSAVDPDGDGRVSWDEYRVKFLASKGHDER EIADKIKNKWDLNIDEETQEVLENLKDRWYQADSPPPDLLLTEKEFLSFLHPEHSRGMLQFMAK EIIRDLDQDGDKRLSLPEFISLPAGTVENQQGQDIDDGWVRDRRREFEELIDADHDGIVTMAEL EDYMDPMNEFSALNEAKQMIAVADENQNHYLEPEEVLKYSEFFTGSKLVDYARSVHEEF hide sequence

RefSeq Acc Id:

ENSSSCP00000041737 ⟸ ENSSSCT00000065513

RefSeq Acc Id:

ENSSSCP00000035128 ⟸ ENSSSCT00000050956

RefSeq Acc Id:

ENSSSCP00000034620 ⟸ ENSSSCT00000059915

RefSeq Acc Id:

ENSSSCP00000003613 ⟸ ENSSSCT00000003699

RefSeq Acc Id:

ENSSSCP00000037330 ⟸ ENSSSCT00000047591

Protein Domains

EF-hand

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000003332	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00015049494	UniProtKB/TrEMBL
	ENSSSCG00025058070	UniProtKB/TrEMBL
	ENSSSCG00030007471	UniProtKB/TrEMBL
	ENSSSCG00035048167	UniProtKB/TrEMBL
	ENSSSCG00040007009	UniProtKB/TrEMBL
	ENSSSCG00045034529	UniProtKB/TrEMBL
	ENSSSCG00050028444	UniProtKB/TrEMBL
	ENSSSCG00055017568	UniProtKB/TrEMBL
	ENSSSCG00060013890	UniProtKB/TrEMBL
	ENSSSCG00065075841	UniProtKB/TrEMBL
	ENSSSCG00070029658	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000003699.5	UniProtKB/TrEMBL
	ENSSSCT00000047591.3	UniProtKB/TrEMBL
	ENSSSCT00000050956	ENTREZGENE
	ENSSSCT00000050956.2	UniProtKB/TrEMBL
	ENSSSCT00000059915.2	UniProtKB/TrEMBL
	ENSSSCT00000065513	ENTREZGENE
	ENSSSCT00000065513.2	UniProtKB/TrEMBL
	ENSSSCT00015067007.1	UniProtKB/TrEMBL
	ENSSSCT00015067205.1	UniProtKB/TrEMBL
	ENSSSCT00015067347.1	UniProtKB/TrEMBL
	ENSSSCT00015067436.1	UniProtKB/TrEMBL
	ENSSSCT00015067497.1	UniProtKB/TrEMBL
	ENSSSCT00015067555.1	UniProtKB/TrEMBL
	ENSSSCT00015067628.1	UniProtKB/TrEMBL
	ENSSSCT00015067711.1	UniProtKB/TrEMBL
	ENSSSCT00025079458.1	UniProtKB/TrEMBL
	ENSSSCT00025079591.1	UniProtKB/TrEMBL
	ENSSSCT00025079758.1	UniProtKB/TrEMBL
	ENSSSCT00025079899.1	UniProtKB/TrEMBL
	ENSSSCT00025080024.1	UniProtKB/TrEMBL
	ENSSSCT00025080139.1	UniProtKB/TrEMBL
	ENSSSCT00025080289.1	UniProtKB/TrEMBL
	ENSSSCT00030010018.1	UniProtKB/TrEMBL
	ENSSSCT00030010034.1	UniProtKB/TrEMBL
	ENSSSCT00030010048.1	UniProtKB/TrEMBL
	ENSSSCT00030010052.1	UniProtKB/TrEMBL
	ENSSSCT00035064156.1	UniProtKB/TrEMBL
	ENSSSCT00035064169.1	UniProtKB/TrEMBL
	ENSSSCT00035064178.1	UniProtKB/TrEMBL
	ENSSSCT00035064181.1	UniProtKB/TrEMBL
	ENSSSCT00035064189.1	UniProtKB/TrEMBL
	ENSSSCT00040009241.1	UniProtKB/TrEMBL
	ENSSSCT00040009259.1	UniProtKB/TrEMBL
	ENSSSCT00040009281.1	UniProtKB/TrEMBL
	ENSSSCT00040009285.1	UniProtKB/TrEMBL
	ENSSSCT00040009295.1	UniProtKB/TrEMBL
	ENSSSCT00040009300.1	UniProtKB/TrEMBL
	ENSSSCT00045059113.1	UniProtKB/TrEMBL
	ENSSSCT00045059139.1	UniProtKB/TrEMBL
	ENSSSCT00045059275.1	UniProtKB/TrEMBL
	ENSSSCT00045059353.1	UniProtKB/TrEMBL
	ENSSSCT00045059389.1	UniProtKB/TrEMBL
	ENSSSCT00045059416.1	UniProtKB/TrEMBL
	ENSSSCT00045059481.1	UniProtKB/TrEMBL
	ENSSSCT00050038367.1	UniProtKB/TrEMBL
	ENSSSCT00050038376.1	UniProtKB/TrEMBL
	ENSSSCT00050038389.1	UniProtKB/TrEMBL
	ENSSSCT00050038395.1	UniProtKB/TrEMBL
	ENSSSCT00055034928.1	UniProtKB/TrEMBL
	ENSSSCT00055035012.1	UniProtKB/TrEMBL
	ENSSSCT00055035089.1	UniProtKB/TrEMBL
	ENSSSCT00055035162.1	UniProtKB/TrEMBL
	ENSSSCT00055035200.1	UniProtKB/TrEMBL
	ENSSSCT00055035298.1	UniProtKB/TrEMBL
	ENSSSCT00055035365.1	UniProtKB/TrEMBL
	ENSSSCT00055035469.1	UniProtKB/TrEMBL
	ENSSSCT00060018316.1	UniProtKB/TrEMBL
	ENSSSCT00060018320.1	UniProtKB/TrEMBL
	ENSSSCT00060018351.1	UniProtKB/TrEMBL
	ENSSSCT00060018370.1	UniProtKB/TrEMBL
	ENSSSCT00060018377.1	UniProtKB/TrEMBL
	ENSSSCT00060018385.1	UniProtKB/TrEMBL
	ENSSSCT00060018393.1	UniProtKB/TrEMBL
	ENSSSCT00065104729.1	UniProtKB/TrEMBL
	ENSSSCT00065104732.1	UniProtKB/TrEMBL
	ENSSSCT00065104740.1	UniProtKB/TrEMBL
	ENSSSCT00065104745.1	UniProtKB/TrEMBL
	ENSSSCT00065104747.1	UniProtKB/TrEMBL
	ENSSSCT00070059610.1	UniProtKB/TrEMBL
	ENSSSCT00070059611.1	UniProtKB/TrEMBL
	ENSSSCT00070059612.1	UniProtKB/TrEMBL
	ENSSSCT00070059613.1	UniProtKB/TrEMBL
Gene3D-CATH	EF-hand	UniProtKB/TrEMBL
InterPro	CAB45	UniProtKB/TrEMBL
	EF-hand-dom_pair	UniProtKB/TrEMBL
	EF_Hand_1_Ca_BS	UniProtKB/TrEMBL
	EF_hand_dom	UniProtKB/TrEMBL
KEGG Report	ssc:100522934	UniProtKB/TrEMBL
NCBI Gene	SDF4	ENTREZGENE
PANTHER	45 KDA CALCIUM-BINDING PROTEIN	UniProtKB/TrEMBL
	RETICULOCALBIN	UniProtKB/TrEMBL
Pfam	EF-hand_5	UniProtKB/TrEMBL
	EF-hand_7	UniProtKB/TrEMBL
PROSITE	EF_HAND_1	UniProtKB/TrEMBL
	EF_HAND_2	UniProtKB/TrEMBL
SMART	EFh	UniProtKB/TrEMBL
Superfamily-SCOP	SSF47473	UniProtKB/TrEMBL
UniProt	A0A286ZSR6	ENTREZGENE, UniProtKB/TrEMBL
	A0A286ZU24_PIG	UniProtKB/TrEMBL
	A0A287A0Q2_PIG	UniProtKB/TrEMBL
	A0A287ACL1	ENTREZGENE, UniProtKB/TrEMBL
	A0A481D2B2	ENTREZGENE, UniProtKB/TrEMBL
	A0A4X1W3C3	ENTREZGENE, UniProtKB/TrEMBL
	A0A4X1W901_PIG	UniProtKB/TrEMBL
	A0A4X1W9A1	ENTREZGENE, UniProtKB/TrEMBL
	A0A4X1WAD6_PIG	UniProtKB/TrEMBL
	A0A8D0P0Y5_PIG	UniProtKB/TrEMBL
	A0A8D0T1V2_PIG	UniProtKB/TrEMBL
	A0A8D1CWC0	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D1J6I9	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D2AAC1_PIG	UniProtKB/TrEMBL
	F1RJF7_PIG	UniProtKB/TrEMBL
VGNC ID	VGNC:92658	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar

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