Sdf4 (stromal cell derived factor 4) - Rat Genome Database

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Gene: Sdf4 (stromal cell derived factor 4) Mus musculus
Analyze
Symbol: Sdf4
Name: stromal cell derived factor 4
RGD ID: 731602
MGI Page MGI
Description: Enables calcium ion binding activity. Involved in fat cell differentiation. Located in Golgi lumen and late endosome. Is expressed in several structures, including alimentary system; brain; genitourinary system; hemolymphoid system gland; and liver and biliary system. Orthologous to human SDF4 (stromal cell derived factor 4).
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: 45 kDa calcium-binding protein; Cab4; Cab45; SDF-4; stromal cell-derived factor 4
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394156,077,300 - 156,098,067 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4156,077,329 - 156,098,067 (+)EnsemblGRCm39 Ensembl
GRCm384155,992,843 - 156,013,610 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4155,992,872 - 156,013,610 (+)EnsemblGRCm38mm10GRCm38
MGSCv374155,367,023 - 155,387,719 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364154,836,714 - 154,857,410 (+)NCBIMGSCv36mm8
Celera4158,256,076 - 158,276,364 (+)NCBICelera
Cytogenetic Map4E2NCBI
cM Map487.66NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8609160   PMID:8938438   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11544199   PMID:12477932   PMID:12520002   PMID:12904583   PMID:14610273   PMID:15489334  
PMID:15782199   PMID:16141072   PMID:16141073   PMID:18355758   PMID:18799693   PMID:21267068   PMID:21565611   PMID:21873635   PMID:27113764   PMID:32325033  


Genomics

Comparative Map Data
Sdf4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394156,077,300 - 156,098,067 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4156,077,329 - 156,098,067 (+)EnsemblGRCm39 Ensembl
GRCm384155,992,843 - 156,013,610 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4155,992,872 - 156,013,610 (+)EnsemblGRCm38mm10GRCm38
MGSCv374155,367,023 - 155,387,719 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364154,836,714 - 154,857,410 (+)NCBIMGSCv36mm8
Celera4158,256,076 - 158,276,364 (+)NCBICelera
Cytogenetic Map4E2NCBI
cM Map487.66NCBI
SDF4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811,216,931 - 1,232,001 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11,216,931 - 1,232,031 (-)EnsemblGRCh38hg38GRCh38
GRCh3711,152,311 - 1,167,381 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3611,142,151 - 1,157,274 (-)NCBINCBI36Build 36hg18NCBI36
Build 3411,192,234 - 1,207,334NCBI
Celera11,416,207 - 1,431,366 (+)NCBICelera
Cytogenetic Map1p36.33NCBI
HuRef1423,986 - 439,143 (-)NCBIHuRef
CHM1_111,138,762 - 1,153,919 (-)NCBICHM1_1
T2T-CHM13v2.01645,388 - 660,462 (-)NCBIT2T-CHM13v2.0
Sdf4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85171,868,591 - 171,885,827 (+)NCBIGRCr8
mRatBN7.25166,586,581 - 166,606,661 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5166,586,390 - 166,604,521 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5169,290,258 - 169,307,133 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05171,111,682 - 171,128,555 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05171,074,216 - 171,091,087 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05173,425,922 - 173,444,478 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5173,425,907 - 173,444,620 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05176,901,543 - 176,918,497 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45172,836,094 - 172,853,044 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15172,850,036 - 172,863,284 (+)NCBI
Celera5164,787,377 - 164,804,459 (+)NCBICelera
Cytogenetic Map5q36NCBI
Sdf4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554869,555,364 - 9,567,340 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554869,555,773 - 9,565,310 (+)NCBIChiLan1.0ChiLan1.0
SDF4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21226,993,607 - 227,009,286 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11225,690,329 - 225,705,966 (+)NCBINHGRI_mPanPan1
PanPan1.111,173,925 - 1,190,390 (-)NCBIpanpan1.1PanPan1.1panPan2
SDF4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1556,407,506 - 56,421,515 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl556,407,807 - 56,421,430 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha556,484,483 - 56,498,492 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0556,610,405 - 56,624,414 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl556,610,409 - 56,624,362 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1556,601,139 - 56,615,150 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0556,493,416 - 56,507,429 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0556,883,417 - 56,897,430 (-)NCBIUU_Cfam_GSD_1.0
Sdf4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505827,567,647 - 27,576,851 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367371,891,415 - 1,898,904 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367371,889,123 - 1,898,303 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SDF4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl663,529,853 - 63,544,944 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1663,529,853 - 63,539,979 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2657,999,040 - 58,008,413 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SDF4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120130,212,962 - 130,228,831 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20130,216,225 - 130,228,962 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605434,781,559 - 34,797,557 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sdf4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248188,365,359 - 8,371,386 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248188,362,107 - 8,371,565 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Sdf4
979 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2139
Count of miRNA genes:770
Interacting mature miRNAs:1012
Transcripts:ENSMUST00000050078, ENSMUST00000097734, ENSMUST00000105578, ENSMUST00000105579, ENSMUST00000124872, ENSMUST00000149971
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11567249Elorr3_methanol induced loss of righting response 3 (mouse)43722677156268235Mouse
10755531Lymph3_mlymphocyte differential 3 (mouse)4124553483156860686Mouse
1300858Tafat_mtally ho associated mesenteric fat pad weight (mouse)Not determined4124621281156860686Mouse
4142139Adip12_madiposity 12 (mouse)Not determined4124621281156860686Mouse
1301982Pltiq1_mphospholipid transfer protein inducibility QTL 1 (mouse)Not determined4124621281156860686Mouse
1300933Cdcs9_mcytokine deficiency colitis susceptibility 9 (mouse)Not determined4125230872156860686Mouse
1300621Tpnr1_mthermal pain response 1 (mouse)Not determined4125230872156860686Mouse
10045620Heal22_mwound healing/regeneration 22 (mouse)Not determined4125230872156860686Mouse
11533916Mts1_mmammary tumor susceptibility 1 (mouse)4125289325156860686Mouse
10043996Gct5_mgranulosa cell tumorigenesis 5 (mouse)Not determined4127784226156860686Mouse
4142481Gct1_mgranulosa cell tumorigenesis 1 (mouse)Not determined4127784226156860686Mouse
1300874Gasa2_mgastritis type A susceptibility locus 2 (mouse)Not determined4133010494156860686Mouse
4142077Ignpq2_mIgA nephropathy QTL 2 (mouse)Not determined4133676733156860686Mouse
1301108Scon2_msucrose consumption 2 (mouse)Not determined4134654451156860686Mouse
1300537Ap3q_malcohol preference 3 QTL (mouse)Not determined4134654451156860686Mouse
1300780Cocrb16_mcocaine related behavior 16 (mouse)Not determined4138943725156860686Mouse

Markers in Region
D4Mon1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384155,991,265 - 155,991,465UniSTSGRCm38
MGSCv374155,365,374 - 155,365,574UniSTSGRCm37
Celera4158,254,466 - 158,254,655UniSTS
Cytogenetic Map4E2UniSTS
D4Mon26  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384156,012,980 - 156,013,139UniSTSGRCm38
MGSCv374155,387,089 - 155,387,248UniSTSGRCm37
Celera4158,275,730 - 158,275,893UniSTS
Cytogenetic Map4E2UniSTS
cM Map479.4UniSTS
D4Mon27  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384156,010,820 - 156,011,069UniSTSGRCm38
MGSCv374155,384,929 - 155,385,178UniSTSGRCm37
Celera4158,273,613 - 158,273,821UniSTS
Cytogenetic Map4E2UniSTS
D4Mon28  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384156,006,854 - 156,007,149UniSTSGRCm38
GRCm381135,335,987 - 135,337,190UniSTSGRCm38
MGSCv374155,380,963 - 155,381,258UniSTSGRCm37
MGSCv371137,232,564 - 137,233,767UniSTSGRCm37
Celera4158,269,638 - 158,269,942UniSTS
Celera1137,964,362 - 137,965,593UniSTS
Cytogenetic Map1FUniSTS
Cytogenetic Map4E2UniSTS
Sdf4  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384156,009,939 - 156,010,108UniSTSGRCm38
MGSCv374155,384,048 - 155,384,217UniSTSGRCm37
Celera4158,272,732 - 158,272,901UniSTS
Cytogenetic Map4E2UniSTS
cM MapUN UniSTS
cM Map4 UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001302467 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001302468 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001302469 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_011341 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AI226497 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK014418 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK077249 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK087335 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK090319 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK157860 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK163400 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK167113 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK178167 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198663 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK207454 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK214240 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL627204 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC005715 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC068152 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY226842 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466594 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ253941 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D50461 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DN176224 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U45977 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U45978 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000050078   ⟹   ENSMUSP00000053175
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4156,077,368 - 156,098,067 (+)Ensembl
GRCm38.p6 Ensembl4155,992,911 - 156,013,610 (+)Ensembl
RefSeq Acc Id: ENSMUST00000097734   ⟹   ENSMUSP00000095340
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4156,077,627 - 156,087,156 (+)Ensembl
GRCm38.p6 Ensembl4155,993,170 - 156,002,699 (+)Ensembl
RefSeq Acc Id: ENSMUST00000105578   ⟹   ENSMUSP00000101203
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4156,077,834 - 156,094,775 (+)Ensembl
GRCm38.p6 Ensembl4155,993,377 - 156,010,318 (+)Ensembl
RefSeq Acc Id: ENSMUST00000105579   ⟹   ENSMUSP00000101204
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4156,077,329 - 156,094,667 (+)Ensembl
GRCm38.p6 Ensembl4155,992,872 - 156,010,210 (+)Ensembl
RefSeq Acc Id: ENSMUST00000124872
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4156,083,905 - 156,085,442 (+)Ensembl
GRCm38.p6 Ensembl4155,999,448 - 156,000,985 (+)Ensembl
RefSeq Acc Id: ENSMUST00000149971
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4156,092,967 - 156,094,314 (+)Ensembl
GRCm38.p6 Ensembl4156,008,510 - 156,009,857 (+)Ensembl
RefSeq Acc Id: NM_001302467   ⟹   NP_001289396
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394156,077,362 - 156,098,067 (+)NCBI
GRCm384155,992,905 - 156,013,610 (+)NCBI
Celera4158,256,005 - 158,276,364 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001302468   ⟹   NP_001289397
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394156,077,794 - 156,098,067 (+)NCBI
GRCm384155,993,337 - 156,013,610 (+)NCBI
Celera4158,256,005 - 158,276,364 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001302469   ⟹   NP_001289398
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394156,077,610 - 156,087,156 (+)NCBI
GRCm384155,993,153 - 156,002,699 (+)NCBI
Celera4158,256,005 - 158,276,364 (+)NCBI
Sequence:
RefSeq Acc Id: NM_011341   ⟹   NP_035471
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394156,077,300 - 156,098,067 (+)NCBI
GRCm384155,992,843 - 156,013,610 (+)NCBI
MGSCv374155,367,023 - 155,387,719 (+)RGD
Celera4158,256,005 - 158,276,364 (+)NCBI
cM Map4 ENTREZGENE
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_035471   ⟸   NM_011341
- Peptide Label: isoform 1 precursor
- UniProtKB: Q3TQP8 (UniProtKB/Swiss-Prot),   Q3TK84 (UniProtKB/Swiss-Prot),   Q61113 (UniProtKB/Swiss-Prot),   Q61112 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001289396   ⟸   NM_001302467
- Peptide Label: isoform 1 precursor
- UniProtKB: Q3TQP8 (UniProtKB/Swiss-Prot),   Q3TK84 (UniProtKB/Swiss-Prot),   Q61113 (UniProtKB/Swiss-Prot),   Q61112 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001289398   ⟸   NM_001302469
- Peptide Label: isoform 2 precursor
- UniProtKB: Q61112 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001289397   ⟸   NM_001302468
- Peptide Label: isoform 1 precursor
- UniProtKB: Q3TQP8 (UniProtKB/Swiss-Prot),   Q3TK84 (UniProtKB/Swiss-Prot),   Q61113 (UniProtKB/Swiss-Prot),   Q61112 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000101203   ⟸   ENSMUST00000105578
RefSeq Acc Id: ENSMUSP00000101204   ⟸   ENSMUST00000105579
RefSeq Acc Id: ENSMUSP00000053175   ⟸   ENSMUST00000050078
RefSeq Acc Id: ENSMUSP00000095340   ⟸   ENSMUST00000097734
Protein Domains
EF-hand

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q61112-F1-model_v2 AlphaFold Q61112 1-361 view protein structure

Promoters
RGD ID:6835413
Promoter ID:MM_KWN:41211
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_080445,   OTTMUST00000025768,   OTTMUST00000064819,   UC008WFR.1,   UC008WFT.1,   XM_001476831_GM4434
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364155,362,621 - 155,367,767 (-)MPROMDB
RGD ID:6836362
Promoter ID:MM_KWN:41212
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lung
Transcripts:OTTMUST00000064820
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364155,373,366 - 155,373,866 (+)MPROMDB
RGD ID:6836364
Promoter ID:MM_KWN:41213
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney,   Liver,   Lung
Transcripts:OTTMUST00000064821
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364155,382,331 - 155,383,067 (+)MPROMDB
RGD ID:6885846
Promoter ID:EPDNEW_M6374
Type:initiation region
Name:Sdf4_2
Description:Mus musculus stromal cell derived factor 4 , transcript variant3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M6375  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm384155,992,874 - 155,992,934EPDNEW
RGD ID:6885848
Promoter ID:EPDNEW_M6375
Type:initiation region
Name:Sdf4_1
Description:Mus musculus stromal cell derived factor 4 , transcript variant3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M6374  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm384155,993,241 - 155,993,301EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:108079 AgrOrtholog
Ensembl Genes ENSMUSG00000029076 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000050078 ENTREZGENE
  ENSMUST00000050078.13 UniProtKB/Swiss-Prot
  ENSMUST00000097734 ENTREZGENE
  ENSMUST00000097734.11 UniProtKB/Swiss-Prot
  ENSMUST00000105578 ENTREZGENE
  ENSMUST00000105578.2 UniProtKB/Swiss-Prot
  ENSMUST00000105579 ENTREZGENE
  ENSMUST00000105579.8 UniProtKB/Swiss-Prot
Gene3D-CATH EF-hand UniProtKB/Swiss-Prot
InterPro CAB45 UniProtKB/Swiss-Prot
  EF-hand-dom_pair UniProtKB/Swiss-Prot
  EF_Hand_1_Ca_BS UniProtKB/Swiss-Prot
  EF_hand_dom UniProtKB/Swiss-Prot
KEGG Report mmu:20318 UniProtKB/Swiss-Prot
MGD MGI:108079 ENTREZGENE
NCBI Gene 20318 ENTREZGENE
PANTHER 45 KDA CALCIUM-BINDING PROTEIN UniProtKB/Swiss-Prot
  RETICULOCALBIN UniProtKB/Swiss-Prot
Pfam EF-hand_5 UniProtKB/Swiss-Prot
  EF-hand_7 UniProtKB/Swiss-Prot
PhenoGen Sdf4 PhenoGen
PROSITE EF_HAND_1 UniProtKB/Swiss-Prot
  EF_HAND_2 UniProtKB/Swiss-Prot
SMART EFh UniProtKB/Swiss-Prot
Superfamily-SCOP SSF47473 UniProtKB/Swiss-Prot
UniProt CAB45_MOUSE UniProtKB/Swiss-Prot
  Q3TK84 ENTREZGENE
  Q3TQP8 ENTREZGENE
  Q61112 ENTREZGENE
  Q61113 ENTREZGENE
UniProt Secondary Q3TK84 UniProtKB/Swiss-Prot
  Q3TQP8 UniProtKB/Swiss-Prot
  Q61113 UniProtKB/Swiss-Prot