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Gene: Opn4 (opsin 4) Rattus norvegicus
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Symbol: Opn4
Name: opsin 4
Description: Exhibits G protein-coupled photoreceptor activity. Involved in phototransduction. Predicted to localize to the integral component of plasma membrane. Orthologous to human OPN4 (opsin 4); INTERACTS WITH ammonium chloride; bisphenol A; furan.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: melanopsin; opsin 4 (melanopsin); opsin-4
Orthologs:
Homo sapiens (human) : OPN4 (opsin 4)  HGNC  Alliance
Mus musculus (house mouse) : Opn4 (opsin 4 (melanopsin))  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Opn4 (opsin 4)
Canis lupus familiaris (dog) : OPN4 (opsin 4)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Opn4 (opsin 4)
Sus scrofa (pig) : OPN4 (opsin 4)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01610,943,353 - 10,966,602 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1610,943,341 - 10,952,549 (-)Ensembl
Rnor_5.0169,268,356 - 9,277,528 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41610,249,756 - 10,258,923 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11610,249,757 - 10,258,921 (-)NCBI
Celera165,287,559 - 5,296,704 (+)NCBICelera
Cytogenetic Map16p15NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
RGD Curation Notes
 
More on Opn4
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 621701
Created: 2002-08-06
Species: Rattus norvegicus
Last Modified: 2019-10-16
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.