Kidm39 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Kidm39 (Kidney mass QTL 39) Rattus norvegicus

Symbol: Kidm39
Name: Kidney mass QTL 39
RGD ID: 2301406
Previously known as: KmC16QTL
Trait: kidney mass   (VT:0002707)    
Measurement Type: both kidneys wet weight to body weight ratio   (CMO:0000340)    
LOD Score: Not Available
P Value: 0.002
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81615,905,802 - 60,905,802RGD_MAPPER_PIPELINE
mRatBN7.2162,851,709 - 15,884,239RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0163,296,688 - 17,464,293RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0163,263,508 - 17,347,173RGDRnor5.0
RGSC_v3.4162,935,812 - 16,359,278RGDRGSC3.4
Cross Type: Not Available
Strains Crossed: SS.LEW-(D16Rat38-D16Chm66)/Ayd 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Kidm39Ratabnormal kidney weight  IAGP 1599557 RGD 

Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Kidm39Ratboth kidneys wet weight to body weight ratio  IDA 1599557 RGD 

Experimental Condition
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Kidm39Ratcontrolled sodium content diet  IDA 1599557 RGD 

Measurement Method
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Kidm39Ratpost excision weight measurement  IDA 1599557 RGD 

Rat Strain
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Kidm39RatSS.LEW-(D16Rat38-D16Chm66)/Ayd  IEA 1599557 RGD 

Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Kidm39Ratkidney mass  IDA 1599557 RGD 


#
Reference Title
Reference Citation
1. Distinct quantitative trait loci for kidney, cardiac, and aortic mass dissociated from and associated with blood pressure in Dahl congenic rats. Duong C, etal., Mamm Genome. 2006 Dec;17(12):1147-61. Epub 2006 Dec 1.


1 to 20 of 200 rows
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
708372Erc2ELKS/RAB6-interacting/CAST family member 21628127123673624Rat
11422894LOC108348452uncharacterized LOC1083484521628837082938011Rat
7668173Aco2-ps1aconitase 2, pseudogene 11628999132910508Rat
9302900LOC103693877PRAME family member 12 pseudogene1629521052958891Rat
41184000LOC120097388uncharacterized LOC1200973881634740803491547Rat
9442066LOC103693876uncharacterized LOC1036938761636820023692605Rat
69250Wnt5aWnt family member 5A1636970323718230Rat
2322864Rpl5-ps1ribosomal protein L5, pseudogene 11639304503932493Rat
631361Cacna2d3calcium voltage-gated channel auxiliary subunit alpha2delta 31640984394912498Rat
2321691Lrtm1leucine-rich repeats and transmembrane domains 11642103434217843Rat
9317194LOC103693891uncharacterized LOC1036938911642265054242947Rat
40981894Rpl7-ps11ribosomal protein L7, pseudogene 111643486614349495Rat
41289686LOC120097594small nucleolar RNA SNORA481649269784927114Rat
1592051Hnrnpa1-ps41heterogeneous nuclear ribonucleoprotein A1, pseudogene 411649574584959246Rat
9134190LOC103693956uncharacterized LOC1036939561650161615028732Rat
2322724Rps7-ps2ribosomal protein S7, pseudogene 21650748725090357Rat
1303129Selenokselenoprotein K1651520665160648Rat
1311878Actr8actin related protein 81651641315186353Rat
1311392Il17rbinterleukin 17 receptor B1651804315194125Rat
735166Chdhcholine dehydrogenase1651942695225541Rat

1 to 20 of 200 rows
1 to 20 of 242 rows
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Expected Size
Chr
Start
Stop
Species
Match
1358034D16Chm632381628514712851709Ratregion
1358042D16Chm662381629952252995463Ratregion
1631551D16Got1202791630199703020251Ratregion
1358041D16Chm602611630804163080679Ratregion
5032765RH1352171811631907383190919Ratregion
1358003D16Chm611901633097213309913Ratregion
5056533RH1444332591633365473336806Ratregion
40724D16Rat872131633801503380363Ratregion
38784D16Rat512221633913053391527Ratregion
1358004D16Chm492151634367143436931Ratregion
45309D16Got32691634470633447332Ratregion
35831D16Rat221771634536603453842Ratregion
1637378D16Got1161081634576883457796Ratregion
5082325BE1191951611634659423466103Ratregion
5085597AW5281802271635306603530886Ratregion
5054209RH1430931721635984723598644Ratregion
5033495RH1390412101636730333673243Ratregion
5060804AI1452022011636732913673492Ratregion
5034363D3S31152681636733523673620Ratregion
5028733Cda0je041061636733593673465Ratregion
1 to 20 of 242 rows

Flank 1: (D16Rat35)
Rat AssemblyChrPosition (strand)Source
GRCr81615,905,802 - 15,906,049 (+)Marker Load Pipeline
mRatBN7.21615,884,239 - 15,884,486 (+)MAPPER
Rnor_6.01617,464,293 - 17,464,539NCBI
Rnor_5.01617,347,173 - 17,347,419UniSTS
RGSC_v3.41616,359,278 - 16,359,525RGD
RGSC_v3.41616,359,279 - 16,359,525UniSTS
RGSC_v3.11616,359,276 - 16,359,523RGD
Celera1616,112,314 - 16,112,560UniSTS
SHRSP x BN Map165.64RGD
SHRSP x BN Map165.64UniSTS
Flank 2: (D16Chm63)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2162,851,471 - 2,851,709 (+)MAPPER
Rnor_6.0163,296,451 - 3,296,688NCBI
Rnor_5.0163,263,271 - 3,263,508UniSTS
RGSC_v3.4162,935,575 - 2,935,812UniSTS
Celera162,814,163 - 2,814,400UniSTS
Cytogenetic Map16p16UniSTS


1 to 10 of 40 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
631561Hcuc2Hepatic copper content QTL 22.8liver copper amount (VT:0003065)liver total copper weight (CMO:0001507)16139533949Rat
1582235Insul8Insulin level QTL 83.30.0063blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)16126727669Rat
1549842Bp248Blood pressure QTL 2480.01arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)163802452995463Rat
2307172Activ4Activity QTL 43.710.00023locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)16133418960Rat
1354584Despr6Despair related QTL 63.10.0067locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16139533930Rat
1357403Slep4Serum leptin concentration QTL 43.91blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1619639137Rat
2302380Slep6Serum leptin concentration QTL 63.36blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)16132139025Rat
737819Hcas4Hepatocarcinoma susceptibility QTL 44.43liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)16422760946975965Rat
12903952Cm117Cardiac mass QTL 1170.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)168323802995225Rat
631517Scl9Serum cholesterol level QTL 93.3blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)161572643321034895Rat

1 to 10 of 40 rows


Note Type Note Reference
qtl_general number of animals used: 8 gender: male 1599557
qtl_general measurement method: selected males were weaned at 21 days of age then fed 2% NaCl diet starting from 35 days of age, at 14 weeks animals were decapitated, kidneys removed blotted and weighed 1599557
qtl_general software package used: ANOVA followed by Dunnett test in the SYSTAT 9 program 1599557
qtl_general has no effect on blood pressure, body weight, cardiac mass, heart right or left ventricle mass or aortic mass 1599557
qtl_map 13.4 Mb 1599557