Kidm39 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL: Kidm39 (Kidney mass QTL 39) Rattus norvegicus

Symbol: Kidm39
Name: Kidney mass QTL 39
RGD ID: 2301406
Also known as: KmC16QTL
Trait: kidney mass   (VT:0002707)    
Measurement Type: both kidneys wet weight to body weight ratio   (CMO:0000340)    
LOD Score: Not Available
P Value: 0.002
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2162,851,709 - 15,884,239RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0163,296,688 - 17,464,293RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0163,263,508 - 17,347,173RGDRnor5.0
RGSC_v3.4162,935,812 - 16,359,278RGDRGSC3.4
Cross Type: Not Available
Strains Crossed: SS.LEW-(D16Rat38-D16Chm66)/Ayd 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method

Vertebrate Trait
kidney mass  (IDA)

Rat Strain

References

References - curated
1. Duong C, etal., Mamm Genome. 2006 Dec;17(12):1147-61. Epub 2006 Dec 1.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
67383Prkcdprotein kinase C, delta1657692265807214Rat
70881Itih4inter-alpha-trypsin inhibitor heavy chain 41660805396095710Rat
3545Rbp3retinol binding protein 31692675389276006Rat
69250Wnt5aWnt family member 5A1636956673718234Rat
70996Sncgsynuclein, gamma1697005139705751Rat
61864Npy4rneuropeptide Y receptor Y41694678019469057Rat
2377Colqcollagen like tail subunit of asymmetric acetylcholinesterase1667318506824973Rat
3113Msmbmicroseminoprotein, beta1673665367387124Rat
61999Sfmbt1Scm-like with four mbt domains 11658890466009860Rat
70989Bmpr1abone morphogenetic protein receptor type 1A1697363909829825Rat
2708Glud1glutamate dehydrogenase 11696403129673961Rat
621506Mapk8mitogen-activated protein kinase 81686388978721960Rat
619849Hacl12-hydroxyacyl-CoA lyase 11668268816863027Rat
620387Pargpoly (ADP-ribose) glycohydrolase1674364297544276Rat
620420Cdhr1cadherin-related family member 1161284343612863321Rat
621701Opn4opsin 41699204089929580Rat
70973Cacna1dcalcium voltage-gated channel subunit alpha1 D1652271575521163Rat
631354Gnl3G protein nucleolar 31662074026213491Rat
68366Grid1glutamate ionotropic receptor delta type subunit 1161013856410885803Rat
727964Syt15synaptotagmin 151695324789543288Rat
628607Lrit1leucine-rich repeat, Ig-like and transmembrane domains 1161282207612830003Rat
708372Erc2ELKS/RAB6-interacting/CAST family member 21628127123673624Rat
620220Sh3bp5SH3-domain binding protein 51665834626678344Rat
621512Gdf10growth differentiation factor 101692371829250537Rat
1304855Capn7calpain 71665456306581908Rat
621036Tkttransketolase1657237645748702Rat
735166Chdhcholine dehydrogenase1651942695225541Rat
62072Slc18a3solute carrier family 18 member A31677136307716491Rat
628616Drgxdorsal root ganglia homeobox1678548497884404Rat
620633Itih3inter-alpha trypsin inhibitor, heavy chain 31661019226117154Rat
621795Dnah1dynein, axonemal, heavy chain 11664555146517103Rat
3863Timm23translocase of inner mitochondrial membrane 231674103087436392Rat
631361Cacna2d3calcium voltage-gated channel auxiliary subunit alpha2delta 31640984394912498Rat
1307237Arhgap22Rho GTPase activating protein 221684738068631552Rat
1306079Sema3gsemaphorin 3G1664135896425221Rat
1304995Nek4NIMA-related kinase 41661449006185376Rat
1307583Smim4small integral membrane protein 41663166296320509Rat
1303129Selenokselenoprotein K1651520665160648Rat
735152StimateSTIM activating enhancer1660133926070829Rat
1304626Ccser2coiled-coil serine-rich protein 2161261310312725764Rat
1304627Chatcholine O-acetyltransferase1676573627717093Rat
1306099Itih1inter-alpha trypsin inhibitor, heavy chain 11661222466136363Rat
1305524Nt5dc25'-nucleotidase domain containing 21663224856330538Rat
1311461Mmrn2multimerin 21697059259727405Rat
1308638Phf7PHD finger protein 71664335356446314Rat
1311534Oxnad1oxidoreductase NAD-binding domain containing 11672934707322540Rat
1310423Vstm4V-set and transmembrane domain containing 41681203368200272Rat
1311509Ercc6ERCC excision repair 6, chromatin remodeling factor1677649837835587Rat
1311878Actr8actin related protein 81651641315186353Rat
1310916Ogdhloxoglutarate dehydrogenase L1675783057604385Rat
1559508RGD1559508similar to hypothetical protein 4930474N05161133253511342384Rat
1309921Tnnc1troponin C1, slow skeletal and cardiac type1664008016405419Rat
727804Mustn1musculoskeletal, embryonic nuclear protein 11660729086075158Rat
1306950Nischnischarin1663643706400675Rat
1305316Btdbiotinidase1668630686894345Rat
1309174Rgrretinal G protein coupled receptor161280159412816402Rat
1309835Zfp488zinc finger protein 4881692823949294129Rat
1307719Anxa8annexin A81693971449412072Rat
1311392Il17rbinterleukin 17 receptor B1651804315194125Rat
1308922Gprin2G protein regulated inducer of neurite outgrowth 21694964529512672Rat
1309812Ptpn20protein tyrosine phosphatase, non-receptor type 201688855858949805Rat
1310057Eaf1ELL associated factor 11666983226713071Rat
1311738Lrrc18leucine rich repeat containing 181682535248277439Rat
1564875Ldb3LIM domain binding 31698557689920108Rat
1566067RGD1566067similar to hypothetical protein 4930474N05161170214611718153Rat
1559804RGD1559804similar to hypothetical protein 4930474N05161122480311231972Rat
1565652Frmpd2FERM and PDZ domain containing 21687576428877307Rat
1564325RGD1564325similar to ribosomal protein S241665216706522244Rat
1563190AntxrlANTXR like1693622119387762Rat
1560429RGD1560429similar to hypothetical protein 4930474N05161134410911353404Rat
1564142Wdfy4WDFY family member 41682218538450494Rat
1561145Tmem273transmembrane protein 2731680495658081981Rat
1562654Rft1RFT1 homolog1658270635861120Rat
1563356RGD1563356similar to hypothetical protein 4930474N05161164465511649507Rat
1559678Nrg3neuregulin 3161422927015352505Rat
1309125Spcs1signal peptidase complex subunit 11661902086191776Rat
1311938Bap1Brca1 associated protein 11664467096455535Rat
1359301Ghitmgrowth hormone inducible transmembrane protein161288555112897887Rat
1563014Ncoa4nuclear receptor coactivator 41673892227409564Rat
1359565Mettl6methyltransferase like 61666838206699013Rat
1564668Lrit2leucine-rich repeat, Ig-like and transmembrane domains 2161283505112839482Rat
1561298Dcp1adecapping mRNA 1A1656567885702151Rat
1359293Glt8d1glycosyltransferase 8 domain containing 11661922696207227Rat
1562641RGD1562641similar to hypothetical protein 4930474N05161166431011672032Rat
1586821LOC683469similar to RNA polymerase II transcription factor SIII subunit A2161407451414076458Rat
1562508RGD1562508similar to hypothetical protein 4930474N05161139887411402678Rat
1559931Ankrd28ankyrin repeat domain 281669184877050244Rat
1565661RGD1565661similar to RIKEN cDNA 3110001I22161311081313111863Rat
1565549Pbrm1polybromo 11662135076312895Rat
1584388Fam25afamily with sequence similarity 25, member A1696806689684474Rat
1565067Shld2shieldin complex subunit 21695449409640323Rat
1566160LOC290595hypothetical gene supported by AF152002161286827012875876Rat
1565329RGD1565329similar to hypothetical protein 4930474N05161118070011189203Rat
1590566Dph3diphthamide biosynthesis 31672882957293734Rat
1590250LOC685718similar to tumor protein, translationally-controlled 1161247666012477351Rat
1590787LOC498588similar to Cofilin-1 (Cofilin, non-muscle isoform)161011179510114251Rat
1590788LOC498577similar to ribosomal protein L13A1677399027741182Rat
1564899RGD1564899similar to chromosome 10 open reading frame 711679105977961900Rat
1589073LOC685813hypothetical protein LOC685813161297457112975485Rat
1586196Gdf2growth differentiation factor 21692554309261429Rat
1583250Isca1-ps1iron-sulfur cluster assembly 1 homolog (S. cerevisiae) , pseudogene 1161007967010081279Rat
1564958RGD1564958similar to glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) (EC 1.2.1.12)161537029015371300Rat
1590924WaplWAPL cohesin release factor161000552010075270Rat
1586999LOC680885hypothetical protein LOC6808851676342077644876Rat
1588237LOC680729similar to GDP-mannose 4, 6-dehydratase1665254346526454Rat
1592051LOC364506similar to heterogeneous nuclear ribonucleoprotein A31649574584959246Rat
1592584LOC685564similar to Ral guanine nucleotide dissociation stimulator (RalGEF) (RalGDS)161169017311697034Rat
1596785LOC681303similar to tumor endothelial marker 8 isoform 1 precursor1693315069358175Rat
1592049LOC364524similar to 40S ribosomal protein SA (p40) (34/67 kDa laminin receptor)161556115315567521Rat
1598050Rpl38-ps3ribosomal protein L38, pseudogene 3161018268810183002Rat
2318714Fam170bfamily with sequence similarity 170, member B1681018998104724Rat
2318938LOC100362043rCG64252-like161150312611636386Rat
2322081Galnt15polypeptide N-acetylgalactosaminyltransferase 151672272327267002Rat
2321348LOC100360810NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 4-like1699348329937215Rat
2322173LOC100363883hypothetical LOC100363883161115642811160928Rat
2322864LOC100360083ribosomal protein L5-like1639304503932493Rat
2321691Lrtm1leucine-rich repeats and transmembrane domains 11642103434217843Rat
2322724LOC100360125ribosomal protein S7-like1650748725090357Rat
2324350LOC100362608peroxisomal 3,2-trans-enoyl-CoA isomerase-like161333893013340889Rat
2325402Mir346microRNA 346161021811810218215Rat
2324745Stab1stabilin 11663304356360934Rat
2324846LOC100363043chromosome 14 open reading frame 119-like161293634512936885Rat
6488495LOC100912224protein SET-like161234554712346636Rat
6491640LOC100911649ral guanine nucleotide dissociation stimulator-like161143305611438066Rat
6500283LOC100910026uncharacterized LOC1009100261693000309332329Rat
6501477LOC100909897uncharacterized LOC100909897161405779414059580Rat
7507794LOC102547142uncharacterized LOC1025471421679385357973540Rat
7532294LOC10254978439S ribosomal protein L37, mitochondrial-like1669449646948306Rat
7613786LOC102555898uncharacterized LOC102555898161379868113850813Rat
7654081LOC102553110ral guanine nucleotide dissociation stimulator-like161120335511209558Rat
7591200LOC102552466uncharacterized LOC102552466161140903611427387Rat
7607439LOC102555502uncharacterized LOC1025555021657082485710535Rat
7673432LOC102546465uncharacterized LOC102546465161564964215659610Rat
7708283LOC102555619uncharacterized LOC1025556191660187496021873Rat
7713473LOC102550037uncharacterized LOC1025500371670923627092787Rat
7668173LOC102553494aconitate hydratase, mitochondrial-like1628999132910508Rat
7743208LOC102550503uncharacterized LOC1025505031675525377560461Rat
7720136LOC102556133uncharacterized LOC102556133161565976115746831Rat
7674954LOC102551632ral guanine nucleotide dissociation stimulator-like161129398311321792Rat
9134190LOC103693956uncharacterized LOC1036939561650161615028732Rat
9302900LOC103693877PRAME family member 12 pseudogene1629521052958891Rat
9317194LOC103693891uncharacterized LOC1036938911642265054242947Rat
9442066LOC103693876uncharacterized LOC1036938761636820023692605Rat
11448581LOC108353077ral guanine nucleotide dissociation stimulator-like161112151311128582Rat
11466116LOC108348435uncharacterized LOC1083484351691389829150141Rat
11474719LOC10835309060S ribosomal protein L34 pseudogene1657003215707311Rat
11357136LOC108348454uncharacterized LOC1083484541652836235291153Rat
11422894LOC108348452uncharacterized LOC1083484521628837082938011Rat
11409211LOC108353080uncharacterized LOC108353080161151437011547017Rat
11399163LOC108348453calsequestrin-1-like1655450345593179Rat
11399720LOC108353075uncharacterized LOC1083530751697544319756843Rat
11389891LOC108353092uncharacterized LOC108353092161138173211387931Rat
11519960LOC108348379uncharacterized LOC108348379161167399911678168Rat
11478084LOC108348374uncharacterized LOC1083483741657542015758706Rat
11502729LOC108353078ral guanine nucleotide dissociation stimulator-like161137143711377948Rat
11496471LOC108348383uncharacterized LOC108348383161535295215364193Rat
11497444LOC108353079uncharacterized LOC108353079161108052511325666Rat
11493406LOC108353073uncharacterized LOC1083530731672667267267706Rat
11493527LOC108353094cytochrome c, somatic pseudogene161287857612878932Rat
41138077LOC120097423elongin-A3 member D-like161365110613652871Rat
41234305LOC120097457elongin-A3 member D-like161363570013637465Rat
41380747LOC120097470uncharacterized LOC120097470161300744613016645Rat
41088228LOC12009753060S ribosomal protein L6-like161370095213711446Rat
41088786LOC120097483uncharacterized LOC120097483161139198711510903Rat
41170814LOC120097616small nucleolar RNA SNORA17161315877913158909Rat
41205510NEWGENE_40934091transfer RNA alanine (anticodon AGC)1663896186389690Rat
41279033LOC120097489uncharacterized LOC1200974891667244666745900Rat
41117791LOC120097533elongin-A2-like161409024114092062Rat
41123311LOC120097586small nucleolar RNA SNORA15161265044412650570Rat
41154593LOC120097603small nucleolar RNA SNORA171684682298468351Rat
41394525LOC120097531elongin-A3-like161406298014068724Rat
41215662LOC120097394uncharacterized LOC1200973941670879187105752Rat
41344701LOC120097449uncharacterized LOC1200974491673471377356399Rat
41345083LOC120097670small nucleolar RNA SNORA741674241367424330Rat
41369911LOC120097588small nucleolar RNA SNORA321658571735857312Rat
41182876LOC120097481ral guanine nucleotide dissociation stimulator-like161136139411366549Rat
41183091LOC120097440elongin-A3 member D-like161365623113657995Rat
41289686LOC120097594small nucleolar RNA SNORA481649269784927114Rat
41070428LOC120097675small nucleolar RNA SNORD113/SNORD114 family1659980805998158Rat
41160719LOC120097456elongin-A3 member D-like161364083613642601Rat
41160895LOC120097632small nucleolar RNA SNORD19B1662097526209831Rat
41184000LOC120097388uncharacterized LOC1200973881634740803491547Rat
41128131LOC120097432ZW10 interactor-like1695838319590123Rat
41349639NEWGENE_40934091transfer RNA alanine (anticodon AGC)161011318910113261Rat
41197998LOC120097479non-POU domain-containing octamer-binding protein-like161165663611664218Rat
41351762LOC120097618small nucleolar RNA SNORA17161298391312984032Rat
41232538LOC120097522putative protein T-ENOL1697456519747040Rat
40948029LOC120097585small nucleolar RNA SNORA151696094459609571Rat
40952345LOC120097615small nucleolar RNA SNORA17161233856812338687Rat
41012872LOC120097563elongin-A2-like161407979814081667Rat
40956320LOC120097628small nucleolar RNA SNORD691662089226209001Rat
40999228LOC120097480non-POU domain-containing octamer-binding protein-like161143979411443972Rat
40981894LOC12009752160S ribosomal protein L7-like1643486614349495Rat
41000842LOC120097386uncharacterized LOC1200973861654102325417781Rat
41001347LOC120097627small nucleolar RNA SNORD191662108386210914Rat
40931794LOC120097604small nucleolar RNA SNORA171694187869418914Rat
40960479LOC120093126ral guanine nucleotide dissociation stimulator-like161144434811489474Rat
40985629LOC120097592small nucleolar RNA SNORA481671642757164418Rat
41007829LOC120097524farnesyl pyrophosphate synthase-like1658905645901971Rat
40937714LOC120097526uncharacterized LOC1200975261673932057395586Rat
40988172LOC120097549elongin-A2-like161408505414086905Rat
41008933LOC120097391uncharacterized LOC120097391161580844315890086Rat
40993192LOC120097387cyclin-dependent kinases regulatory subunit 2-like1634066233406864Rat
41048724LOC120097366elongin-A2-like161409549214097251Rat
41143229LOC120093076elongin-A3 member D-like161363056913632334Rat
41335549LOC120097467uncharacterized LOC120097467161532003715351518Rat
41317526NEWGENE_40933816transfer RNA valine (anticodon AAC)1673108207310892Rat
41058384NEWGENE_40926764transfer RNA proline (anticodon AGG)1677193637719443Rat
41224408LOC120097651U6 spliceosomal RNA161251047812510584Rat
41301818LOC120097595small nucleolar RNA SNORA481665420676542204Rat
41037850LOC120097424uncharacterized LOC1200974241694534069464250Rat
41040544LOC120097482ral guanine nucleotide dissociation stimulator-like161126906111277700Rat
41238505LOC120097453elongin-A3 member D-like161364596713647732Rat
41067760NEWGENE_41052310transfer RNA valine (anticodon CAC)161313437313134453Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
1358034D16Chm632381628514712851709Ratregion
1358042D16Chm662381629952252995463Ratregion
1631551D16Got1202791630199703020251Ratregion
1358041D16Chm602611630804163080679Ratregion
5032765RH1352171811631907383190919Ratregion
1358003D16Chm611901633097213309913Ratregion
5056533RH1444332591633365473336806Ratregion
40724D16Rat872071633801503380363Ratregion
38784D16Rat512421633913053391527Ratregion
1358004D16Chm492131634367143436931Ratregion
45309D16Got32691634470633447332Ratregion
35831D16Rat221781634536603453842Ratregion
1637378D16Got1161081634576883457796Ratregion
5082325BE1191951611634659423466103Ratregion
5085597AW5281802261635306603530886Ratregion
5054209RH1430931721635984723598644Ratregion
5033495RH1390412101636730333673243Ratregion
5060804AI1452022011636732913673492Ratregion
5034363D3S31152681636733523673620Ratregion
5028733Cda0je041061636733593673465Ratregion
5088881AU0488251901636797883679978Ratregion
5061536BF3966532141636957503695964Ratregion
5506577Wnt5a2341637030223704443Ratregion
5088145Wnt5a1891637135683713757Ratregion
5088147Wnt5a2211637135683713789Ratregion
5064622BF3994591561637156183715774Ratregion
5052281MDB03321651637160443716209Ratregion
5062866BE1131071601637179473718107Ratregion
66387D16Mco34001639278273928280Ratregion
1628998D16Got1232861640922614092540Ratregion
5066870AU0481022131641202794120492Ratregion
33848D16Mit21691642276094227730Ratregion
5048770RH1330952091642426904242899Ratregion
5501522D2S3397621642552794256041Ratregion
5088967AU0488752071644741404474347Ratregion
40060D16Rat861551648248364824985Ratregion
5060818BF3891952441651567415156985Ratregion
5063808AW5352641531651709785171129Ratregion
5061212BE1112152041651861285186332Ratregion
5057255AI5551462201652427265242946Ratregion
5070149RH945001851652453125245497Ratregion
5062972BE1135261681652644305264598Ratregion
5087450PMC18246P17901652951945295984Ratregion
1628013D16Got1141391653727645372903Ratregion
5054739RH1433972421654115255411767Ratregion
5059460AW5309621511656575365657687Ratregion
5085653BI2767121531656990495699202Ratregion
5047546RH1323891821657018565702038Ratregion
5502772TKT1261657449175745156Ratregion
5081681BE1179941581657475695747727Ratregion
42020D16Arb44201657692785769666Ratregion
34689D16Mgh71431657694075769550Ratregion
5507055UniSTS:2242761901657694215769611Ratregion
5065080AI0442382491657695315769780Ratregion
5076640RH1392931351658458705846005Ratregion
45310D16Got42971658660715866368Ratregion
5060352AW5315151661658891195889285Ratregion
5044354RH1305541831660051036005286Ratregion
5084312AA8501651201660061166006236Ratregion
5048742RH1330792031660086976008900Ratregion
5033053RH1374172131660093166009529Ratregion
1635324D16Got1091671660651466065313Ratregion
5048324RH1328371841660705956070779Ratregion
5073022RH1371891801660749566075136Ratregion
5041080RH1286511831660955036095686Ratregion
5044294RH1305201961661019416102137Ratregion
5026426RH1321661921661671226167314Ratregion
5081921BE1187561591661851286185287Ratregion
5062852BE1130391881661929286193116Ratregion
5086693AA8918351891662067546206943Ratregion
5054893RH1434851981662093526209550Ratregion
5047950RH1326221871663116626311849Ratregion
5039384RH1276752101663645356364745Ratregion
5034714BI2822842161663645766364792Ratregion
5054857RH1434651451663691756369320Ratregion
5034658BI2751772091663766876376896Ratregion
5063570BI2899701591664016766401835Ratregion
5027469AI8746261171664049886405105Ratregion
5050310RH1339821931664241916424384Ratregion
5049008RH1332331971664258836426080Ratregion
5047924RH1326072071664335806433787Ratregion
5054677RH1433622241664464716446695Ratregion
5045176RH1310281861664552216455407Ratregion
5045176RH1310281861664552216455407Ratregion
5026778RH1334931801665817096581889Ratregion
5086713BE1072941791665834626583641Ratregion
5506595SH3BP5961665881636588259Ratregion
45312D16Rat1241451666044876604614Ratregion
5088649AU0486951281666764536676581Ratregion
5084304AA8501481461666814836681629Ratregion
5050340RH1340001821666839346684116Ratregion
5032305AI666536801667127306712810Ratregion
5073420RH1374261941667329346733128Ratregion
5034936AI2287201311667562046756335Ratregion
45313D16Got911761667717416771917Ratregion
5070572RH1345791851668878396888024Ratregion
5053585RH1427341151668941366894251Ratregion
5054165RH1430681141668941376894251Ratregion
5041320RH1287892091669186086918817Ratregion
5042522RH1294851941669199846920178Ratregion
5062452BF3979061641669208516921015Ratregion
5032415AI604979851669214236921508Ratregion
5500145UniSTS:2371502051669214246921629Ratregion
5064998BE1088811691669358516936020Ratregion
5072704RH1370041531669597736959926Ratregion
5088821AU0487911401671282907128430Ratregion
45307D16Got12271671962037196434Ratregion
5054429RH1432191091672663387266447Ratregion
5053881RH1429041421672668297266971Ratregion
5075488RH1386231401672668317266971Ratregion
5044540RH1306621811672883157288496Ratregion
5045332RH1311171931672904767290669Ratregion
5086175AA8753182041672910257291229Ratregion
5053405RH1426291081673747997374907Ratregion
60015D12Got381721673968087396980Ratregion
5026478RH13236601674052587405472Ratregion
5084010AI0109831941674159287416122Ratregion
40498D16Rat1071331675223397522468Ratregion
1358023D16Chm581991675389127539111Ratregion
5041054RH1286361801675439967544176Ratregion
5056175RH1442261151675452087545323Ratregion
5033337RH1384631521675545997554751Ratregion
5064130BE1206411521675559457556097Ratregion
45315D16Got71831675860107586195Ratregion
5075906RH1388651731676574177657590Ratregion
7206542UniSTS:5470109091677142887715197Ratregion
5026342RH1318381811677363387736519Ratregion
5060308AW5312142001678280457828245Ratregion
5045676RH1313152071678334887833695Ratregion
5029223RH1439831131678339697834082Ratregion
5031562AU0479163001678895947889894Ratregion
5073526RH1374871901679116857911875Ratregion
45316D16Got81651679980777998243Ratregion
37320D16Rat311991680829068083107Ratregion
5068842AU0468922701680847188084983Ratregion
5086849BF4018301461680948498094995Ratregion
43064D16Rat1232391681004118100635Ratregion
5079942RH1412922041681998898200093Ratregion
5046812RH1319681671682218948222061Ratregion
5087120BM3892401861682219698222155Ratregion
5090441AU0497522681682633578263625Ratregion
5026784RH1335152191682778458278064Ratregion
502788120.MMHAP82FRG8.seq1761683021818302357Ratregion
39272D16Rat382291683361478336281Ratregion
39272D16Rat382291683361478336378Ratregion
40634D16Rat832231686275678627782Ratregion
5051535AI849689841686389578639041Ratregion
5076262RH1390741331686389928639125Ratregion
5042322RH1293672071686390618639268Ratregion
5500141UniSTS:2371612951686397288640023Ratregion
5028364STS-L263181371686432148643351Ratregion
5501804MARC_13424-13425:1002294866:11021686476908648300Ratregion
5079012RH1406831961687097448709941Ratregion
5055019RH1435591091687213328721441Ratregion
37058D16Rat111881687505488750747Ratregion
45317D16Got951321687787138778842Ratregion
5062134BE1062411641688770728877236Ratregion
5041218RH1287301811692490159249196Ratregion
5064440BF3992231921692502179250409Ratregion
5057618BE0957122201692679859268205Ratregion
5076724RH1393422241692764349276658Ratregion
5061676BE1058151561692775819277737Ratregion
5059182BE1029841501692825369282686Ratregion
60132D16Got9721693408079340879Ratregion
5079622RH1411081801694116809411860Ratregion
5035997PMC60063P17321694680179468749Ratregion
5062722AW5340541581695350919535249Ratregion
5050856RH1342981851695505519550736Ratregion
5067300AU0478391331695873119587444Ratregion
5039310RH1276332001695879079588085Ratregion
40614D16Rat1111411696107239610876Ratregion
10660D16Mgh32241696389139639137Ratregion
66394D16Mco92041696389219639125Ratregion
67250D16Arb112021696391899639391Ratregion
5039364RH1276641801696730379673217Ratregion
5039082RH1275022001696735479673747Ratregion
5052149RH948681711696736489673819Ratregion
5052151RH948691831696736519673834Ratregion
5029893BI2850921281696807249680852Ratregion
5073582RH1375191681697266819726849Ratregion
5041182RH1287091901697272099727399Ratregion
5070738RH1346762051697342229734427Ratregion
5072430RH1368442121697347119734923Ratregion
5052807RH1422851971697348269735023Ratregion
5078976RH1406621861697351719735357Ratregion
5500147UniSTS:2371641101697355159735625Ratregion
5083529BE1004541701697361229736292Ratregion
5500669RH1365902221697373739737595Ratregion
5066368AU0483981551698097629809917Ratregion
5065646BE1095721521698121709812322Ratregion
5050116RH1338712181698568089857026Ratregion
5049014RH1332361971698926139892810Ratregion
5503126LDB3881699086859909246Ratregion
5072172RH1366941561699205059920661Ratregion
5058646BE1022381501699860859986235Ratregion
5073190RH137292183161000502510005208Ratregion
5084702AI17913396161002390810024004Ratregion
5031892AU046803240161003441510034657Ratregion
5066108BE116851156161004080810040964Ratregion
5054911RH143495120161005258310052703Ratregion
5043490RH130055218161007495110075169Ratregion
5061754AI715562101161009374010093841Ratregion
5082901BF390373157161016925810169415Ratregion
5054227RH143103215161042274810422963Ratregion
5066424AU048365185161046240910462594Ratregion
5090489AU049780134161055344910553583Ratregion
60123D16Got14201161086441610864617Ratregion
5036324Grid1132161088533410885466Ratregion
5087895UniSTS:143254153161088534210885495Ratregion
5033215RH138007225161088810910888334Ratregion
38858D16Rat54245161089057910890802Ratregion
39200D16Rat32125161091889410919027Ratregion
34833D13Rat19169161144291211443111Ratregion
45320D16Got13186161149085511491041Ratregion
5085477BM391146193161150127811501471Ratregion
5067562AU047670155161160232811602483Ratregion
5036893AU049538108161170274711703399Ratregion
41412D16Rat85156161208384212083987Ratregion
45323D16Got1296161241872812418824Ratregion
5061578BF396728148161261532312615471Ratregion
5053311RH142575137161263820412638341Ratregion
43099D17Rat171116161271130512711501Ratregion
45318D16Got10393161279037012790760Ratregion
5070844RH134738208161282951112829719Ratregion
5062680AI716200143161286837612868519Ratregion
5053665RH142780296161288495012885246Ratregion
5049144RH133311193161288580812886001Ratregion
5085242AA799642126161288822012888346Ratregion
43065D16Rat122214161292757112927779Ratregion
5067820AU047516240161303668613036921Ratregion
5059270BF387911195161309414613094341Ratregion
5500412GDB:5550190161345540413455633Ratregion
45321D16Got16223161376057713760799Ratregion
5056419RH144367139161422939514229534Ratregion
5065430BF412035215161449911514499330Ratregion
5075928RH138878184161460504714605231Ratregion
45322D16Got15131161480922614809357Ratregion
1638438D16Got101238161508539415085632Ratregion
5065236BE121252210161538402115384231Ratregion
40382D16Rat81153161540773015407877Ratregion
38370D16Rat44205161572624415726433Ratregion
38834D16Rat35281161588423915884486Ratregion
Position Markers

Flank 1: (D16Rat35)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21615,884,239 - 15,884,486 (+)MAPPER
Rnor_6.01617,464,293 - 17,464,539NCBI
Rnor_5.01617,347,173 - 17,347,419UniSTS
RGSC_v3.41616,359,278 - 16,359,525RGD
RGSC_v3.41616,359,279 - 16,359,525UniSTS
RGSC_v3.11616,359,276 - 16,359,523RGD
Celera1616,112,314 - 16,112,560UniSTS
SHRSP x BN Map165.64RGD
SHRSP x BN Map165.64UniSTS
Flank 2: (D16Chm63)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2162,851,471 - 2,851,709 (+)MAPPER
Rnor_6.0163,296,451 - 3,296,688NCBI
Rnor_5.0163,263,271 - 3,263,508UniSTS
RGSC_v3.4162,935,575 - 2,935,812UniSTS
Celera162,814,163 - 2,814,400UniSTS
Cytogenetic Map16p16UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2325838Bp347Blood pressure QTL 3470.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1613080679Rat
1357403Slep4Serum leptin concentration QTL 43.91blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1619639137Rat
1600369Hcas8Hepatocarcinoma susceptibility QTL 8liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)16122477621Rat
631830Alc7Alcohol consumption QTL 72.9consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16126727669Rat
634355Rends4Renal damage susceptibility QTL 40.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)16126727669Rat
1582235Insul8Insulin level QTL 83.30.0063blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)16126727669Rat
9590151Scort8Serum corticosterone level QTL 88.450.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)16130836262Rat
2302380Slep6Serum leptin concentration QTL 63.36blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)16132139025Rat
2307172Activ4Activity QTL 43.710.00023locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)16133418960Rat
1354584Despr6Despair related QTL 63.10.0067locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16139533930Rat
2303566Bw90Body weight QTL 902body mass (VT:0001259)body weight (CMO:0000012)16139533930Rat
631561Hcuc2Hepatic copper content QTL 22.8hepatic copper amount (VT:0003065)liver total copper weight (CMO:0001507)16139533949Rat
6903319Bw114Body weight QTL 1142.70.0037body mass (VT:0001259)body weight (CMO:0000012)16143534949Rat
7411664Foco30Food consumption QTL 30110.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)16144588133Rat
1354625Despr7Despair related QTL 73.160.016locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16144977551Rat
1549842Bp248Blood pressure QTL 2480.01arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)163802452995463Rat
1600378Arunc4Aerobic running capacity QTL 40.03exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)1638024580345693Rat
2293343Glom16Glomerulus QTL 167.4kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1683223646053497Rat
2312660Bw95Body weight QTL 950.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)1683223659492508Rat
2312663Slep9Serum leptin concentration QTL 90.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1683223659492508Rat
2312666Insul16Insulin level QTL 160.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1683223659492508Rat
2312669Stl23Serum triglyceride level QTL 230.01blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1683223659492508Rat
12903278Am16Aortic mass QTL 160.019aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)168323802995225Rat
12903279Cm115Cardiac mass QTL 1150.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)168323802995225Rat
12903281Cm116Cardiac mass QTL 1160.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)168323802995225Rat
12903952Cm117Cardiac mass QTL 1170.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)168323802995225Rat
12903954Bw186Body weight QTL 1860.011body mass (VT:0001259)body weight (CMO:0000012)168323802995225Rat
2301404Bp321Blood pressure QTL 3210.05arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)168323802995225Rat
12903955Kidm69Kidney mass QTL 690.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)168323804227609Rat
2301406Kidm39Kidney mass QTL 390.002kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)16285170915884239Rat
1300133Rf24Renal function QTL 243.64blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)16338015021361552Rat
2306902Bp339Blood pressure QTL 3390.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16338015043025077Rat
737825Alc13Alcohol consumption QTL 134.5consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16422760916039848Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)16422760943025077Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16422760943025077Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)16422760943025077Rat
737819Hcas4Hepatocarcinoma susceptibility QTL 44.43liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)16422760946975965Rat
61405Niddm6Non-insulin dependent diabetes mellitus QTL 63.660.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)16422760948972724Rat
61338Bp23Blood pressure QTL 234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16422760949227609Rat
737826Alc11Alcohol consumption QTL 113.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16422760960252231Rat
61372Bp40Blood pressure QTL 402.2blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)16422773017696785Rat
631517Scl9Serum cholesterol level QTL 93.3blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)161572643321034895Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_general number of animals used: 8 gender: male 1599557
qtl_general measurement method: selected males were weaned at 21 days of age then fed 2% NaCl diet starting from 35 days of age, at 14 weeks animals were decapitated, kidneys removed blotted and weighed 1599557
qtl_general software package used: ANOVA followed by Dunnett test in the SYSTAT 9 program 1599557
qtl_general has no effect on blood pressure, body weight, cardiac mass, heart right or left ventricle mass or aortic mass 1599557
qtl_map 13.4 Mb 1599557