 Gene-Chemical Interaction Annotations | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Gene Ontology AnnotationsMolecular Pathway Annotations |
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Analyze GeneStrainQTL List |
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Gene Ontology AnnotationsMolecular Pathway AnnotationsDisease Annotations
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Gene-Chemical Interaction Annotations
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Gene Ontology AnnotationsBiological Process
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Cellular Component
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Molecular Function
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Molecular Pathway AnnotationsReferences - curated| 1. | Colavecchia M, etal., Am J Physiol Endocrinol Metab. 2003 Jan;284(1):E29-35. doi: 10.1152/ajpendo.00294.2002. Epub 2002 Sep 17. |
| 2. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
| 3. | GOA data from the GO Consortium |
| 4. | Ishihara N and Mihara K, J Biochem (Tokyo) 1998 Apr;123(4):722-32. |
| 5. | Ishihara N, etal., J Biochem. 1998 Oct;124(4):824-34. |
| 6. | MGD data from the GO Consortium |
| 7. | NCBI rat LocusLink and RefSeq merged data July 26, 2002 |
| 8. | RGD automated data pipeline |
| 9. | RGD automated import pipeline for gene-chemical interactions |
| 10. | Schulz C, etal., Trends Cell Biol. 2015 May;25(5):265-75. doi: 10.1016/j.tcb.2014.12.001. Epub 2014 Dec 23. |
| 11. | Singh K and Hood DA, Am J Physiol Cell Physiol. 2011 Jan;300(1):C138-45. doi: 10.1152/ajpcell.00181.2010. Epub 2010 Oct 13. |
| 12. | Tentative Sequence Data IDs. TIGR Gene Index, Rat Data |
| 13. | Wenz LS, etal., Biochim Biophys Acta. 2015 May;1853(5):1119-29. doi: 10.1016/j.bbamcr.2015.01.012. Epub 2015 Jan 26. |
References - uncuratedGenomics
Comparative Map Data| Timm23 (Rattus norvegicus - Norway rat) |
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| TIMM23 (Homo sapiens - human) |
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| Timm23 (Mus musculus - house mouse) |
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| TIMM23 (Pan paniscus - bonobo/pygmy chimpanzee) |
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| LOC486776 (Canis lupus familiaris - dog) |
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| LOC100157391 (Sus scrofa - pig) |
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Position Markers| AI010983 |
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QTLs in Region (Rnor_6.0)| The following QTLs overlap with this region. |  | Full Report | | CSV | | TAB | | Printer | | Gviewer |
miRNA Target Status
Predicted Target Of
| The detailed report is available here: | | Full Report | | CSV | | TAB | | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
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Expression
RNA-SEQ ExpressionHigh: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM
| alimentary part of gastrointestinal system | circulatory system | endocrine system | exocrine system | hemolymphoid system | hepatobiliary system | integumental system | musculoskeletal system | nervous system | renal system | reproductive system | respiratory system | appendage | |
| High | |||||||||||||
| Medium | 3 | 43 | 57 | 41 | 19 | 41 | 8 | 11 | 74 | 35 | 41 | 11 | 8 |
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| Below cutoff |
View RNA-SEQ Expression Data
Sequence
Nucleotide Sequences| RefSeq Transcripts | NM_019352 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| GenBank Nucleotide | AAHX01086419 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| AB006451 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AC129637 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| BC058477 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| BC083559 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| FQ215721 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| FQ216304 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| FQ216447 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| FQ229692 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| FQ229803 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| FQ234059 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
Reference Sequences
| RefSeq Acc Id: | NM_019352 ⟹ NP_062225 | ||||||||||||||||||||
| RefSeq Status: | PROVISIONAL | ||||||||||||||||||||
| Type: | CODING | ||||||||||||||||||||
| Position: |
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| Sequence: |
GCAACGCGGGTCTTCCCGCTGTTGCTGTCGGGGCCACGGCCGAGCACACGACCCCGGCCTGAGGhide sequence |
Protein Sequences| Protein RefSeqs | NP_062225 | (Get FASTA) | NCBI Sequence Viewer |
| GenBank Protein | AAH83559 | (Get FASTA) | NCBI Sequence Viewer |
| BAA21819 | (Get FASTA) | NCBI Sequence Viewer | |
| O35093 | (Get FASTA) | NCBI Sequence Viewer |
Reference Sequences
| RefSeq Acc Id: | NP_062225 ⟸ NM_019352 |
| - UniProtKB: | O35093 (UniProtKB/Swiss-Prot) |
| - Sequence: |
MEGGGGSSNKSTGGLAGFFGAGGAGYSNADLAGVPLTGMNPLSPYLNVDPRYLVQDTDEFILPThide sequence |
TranscriptomePromoters| RGD ID: | 13699940 | ||||||||
| Promoter ID: | EPDNEW_R10463 | ||||||||
| Type: | initiation region | ||||||||
| Name: | Timm23_1 | ||||||||
| Description: | translocase of inner mitochondrial membrane 23 | ||||||||
| SO ACC ID: | SO:0000170 | ||||||||
| Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
| Experiment Methods: | Single-end sequencing. | ||||||||
| Position: |
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Strain Variation
Strain Sequence Variants (Rnor 6.0)
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Additional Information
External Database Links| Database | Acc Id | Source(s) |
| AGR Gene | RGD:3863 | AgrOrtholog |
| Ensembl Genes | ENSRNOG00000019811 | Ensembl, ENTREZGENE |
| Ensembl Protein | ENSRNOP00000026932 | ENTREZGENE |
| Ensembl Transcript | ENSRNOT00000026932 | ENTREZGENE |
| IMAGE_CLONE | IMAGE:7135081 | IMAGE-MGC_LOAD |
| InterPro | Tim23 | UniProtKB/Swiss-Prot |
| KEGG Report | rno:54312 | UniProtKB/Swiss-Prot |
| MGC_CLONE | MGC:93478 | IMAGE-MGC_LOAD |
| NCBI Gene | 54312 | ENTREZGENE |
| PhenoGen | Timm23 | PhenoGen |
| TIGR | TC204523 | |
| TIGRFAMs | 3a0801s02tim23 | UniProtKB/Swiss-Prot |
| UniGene | Rn.117811 | ENTREZGENE |
| Rn.154974 | ENTREZGENE | |
| Rn.2230 | ENTREZGENE | |
| UniProt | O35093 | ENTREZGENE, UniProtKB/Swiss-Prot |
Nomenclature History| Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
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| 2016-03-15 | Timm23 | translocase of inner mitochondrial membrane 23 | Timm23 | translocase of inner mitochondrial membrane 23 homolog (yeast) | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
| 2002-06-10 | Timm23 | translocase of inner mitochondrial membrane 23 homolog (yeast) | Name updated | 70584 | APPROVED |
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| More on Timm23 | |
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Alliance Gene |
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NCBI Gene |
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Ensembl Gene |
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JBrowse: rn5 rn6 |
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NCBI Genome Data Viewer |
| RGD Object Information | |
| RGD ID: | 3863 |
| Created: | 2000-05-25 |
| Species: | Rattus norvegicus |
| Last Modified: | 2020-06-09 |
| Status: | ACTIVE |
