Dcp1a (decapping mRNA 1A) - Rat Genome Database

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Gene: Dcp1a (decapping mRNA 1A) Rattus norvegicus
Analyze
Symbol: Dcp1a
Name: decapping mRNA 1A
RGD ID: 1561298
Description: Enables kinesin binding activity. Predicted to be involved in deadenylation-dependent decapping of nuclear-transcribed mRNA; deadenylation-independent decapping of nuclear-transcribed mRNA; and protein localization to cytoplasmic stress granule. Predicted to be located in cytoplasmic ribonucleoprotein granule. Predicted to be active in P-body. Orthologous to human DCP1A (decapping mRNA 1A); PARTICIPATES IN RNA degradation pathway; INTERACTS WITH 2,2',4,4'-Tetrabromodiphenyl ether; bisphenol A; gentamycin.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: DCP1 decapping enzyme homolog A (S. cerevisiae); LOC361109; mRNA-decapping enzyme 1A; RGD1561298; similar to transcription factor; test2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2165,656,788 - 5,702,151 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl165,656,773 - 5,702,140 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx165,669,169 - 5,710,742 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0166,814,620 - 6,856,195 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0165,667,742 - 5,709,322 (+)NCBIRnor_WKY
Rnor_6.0166,542,415 - 6,583,856 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl166,542,216 - 6,587,619 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0166,476,320 - 6,517,715 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4165,840,678 - 5,883,381 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera169,490,489 - 9,531,406 (-)NCBICelera
Cytogenetic Map16p16NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Activity-dependent synaptic localization of processing bodies and their role in dendritic structural plasticity. Oh JY, etal., J Cell Sci. 2013 May 1;126(Pt 9):2114-23. doi: 10.1242/jcs.125690. Epub 2013 Mar 13.
3. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:16364915   PMID:18625844   PMID:19861488   PMID:19946888   PMID:19966221   PMID:22745163   PMID:24965446  


Genomics

Comparative Map Data
Dcp1a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2165,656,788 - 5,702,151 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl165,656,773 - 5,702,140 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx165,669,169 - 5,710,742 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0166,814,620 - 6,856,195 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0165,667,742 - 5,709,322 (+)NCBIRnor_WKY
Rnor_6.0166,542,415 - 6,583,856 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl166,542,216 - 6,587,619 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0166,476,320 - 6,517,715 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4165,840,678 - 5,883,381 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera169,490,489 - 9,531,406 (-)NCBICelera
Cytogenetic Map16p16NCBI
DCP1A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38353,283,429 - 53,347,543 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl353,283,429 - 53,347,586 (-)EnsemblGRCh38hg38GRCh38
GRCh37353,317,449 - 53,381,570 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36353,292,489 - 53,356,677 (-)NCBINCBI36Build 36hg18NCBI36
Build 34353,296,427 - 53,356,653NCBI
Celera353,284,637 - 53,348,841 (-)NCBICelera
Cytogenetic Map3p21.1NCBI
HuRef353,366,873 - 53,431,011 (-)NCBIHuRef
CHM1_1353,269,053 - 53,333,274 (-)NCBICHM1_1
T2T-CHM13v2.0353,316,420 - 53,380,518 (-)NCBIT2T-CHM13v2.0
Dcp1a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391430,201,443 - 30,249,013 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1430,201,492 - 30,249,020 (+)EnsemblGRCm39 Ensembl
GRCm381430,479,486 - 30,527,056 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1430,479,535 - 30,527,063 (+)EnsemblGRCm38mm10GRCm38
MGSCv371431,292,751 - 31,340,242 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361429,308,621 - 29,356,065 (+)NCBIMGSCv36mm8
Celera1426,736,107 - 26,783,618 (+)NCBICelera
Cytogenetic Map14BNCBI
cM Map1418.75NCBI
Dcp1a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554303,225,840 - 3,284,064 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554303,225,840 - 3,284,058 (-)NCBIChiLan1.0ChiLan1.0
DCP1A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1354,449,980 - 54,514,267 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl354,449,980 - 54,514,267 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0353,231,318 - 53,291,890 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
DCP1A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12036,597,457 - 36,661,362 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2036,597,178 - 36,657,756 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2036,533,884 - 36,597,988 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02036,875,441 - 36,939,771 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2036,875,504 - 36,939,709 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12036,312,345 - 36,376,559 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02036,674,363 - 36,738,449 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02036,888,559 - 36,952,682 (+)NCBIUU_Cfam_GSD_1.0
Dcp1a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118170,861,241 - 170,912,568 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049364733,998,172 - 4,051,140 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DCP1A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1335,391,320 - 35,455,743 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11335,392,592 - 35,455,639 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21338,462,231 - 38,525,387 (-)NCBISscrofa10.2Sscrofa10.2susScr3
DCP1A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12214,678,611 - 14,735,688 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2214,678,429 - 14,735,619 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041152,157,995 - 152,216,954 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dcp1a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248223,902,595 - 3,967,580 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248223,903,535 - 3,970,763 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Position Markers
RH132389  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2165,701,856 - 5,702,038 (+)MAPPERmRatBN7.2
Rnor_6.0166,587,331 - 6,587,512NCBIRnor6.0
Rnor_5.0166,521,190 - 6,521,371UniSTSRnor5.0
RGSC_v3.4165,886,856 - 5,887,037UniSTSRGSC3.4
Celera169,486,833 - 9,487,014UniSTS
RH 3.4 Map1633.3UniSTS
Cytogenetic Map16p16UniSTS
AW530962  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2165,657,536 - 5,657,687 (+)MAPPERmRatBN7.2
Rnor_6.0166,543,027 - 6,543,177NCBIRnor6.0
Rnor_5.0166,476,932 - 6,477,082UniSTSRnor5.0
RGSC_v3.4165,841,290 - 5,841,440UniSTSRGSC3.4
Celera169,530,644 - 9,530,794UniSTS
RH 3.4 Map1630.4UniSTS
Cytogenetic Map16p16UniSTS
BI276712  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2165,699,049 - 5,699,202 (+)MAPPERmRatBN7.2
Rnor_6.0166,584,524 - 6,584,676NCBIRnor6.0
Rnor_5.0166,518,383 - 6,518,535UniSTSRnor5.0
RGSC_v3.4165,884,049 - 5,884,201UniSTSRGSC3.4
Celera169,489,669 - 9,489,821UniSTS
RH 3.4 Map1616.3UniSTS
Cytogenetic Map16p16UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357403Slep4Serum leptin concentration QTL 43.91blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1619639137Rat
1600369Hcas8Hepatocarcinoma susceptibility QTL 8liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)16122477621Rat
631830Alc7Alcohol consumption QTL 72.9consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16126727669Rat
634355Rends4Renal damage susceptibility QTL 40.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)16126727669Rat
1582235Insul8Insulin level QTL 83.30.0063blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)16126727669Rat
9590151Scort8Serum corticosterone level QTL 88.450.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)16130836262Rat
2302380Slep6Serum leptin concentration QTL 63.36blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)16132139025Rat
2307172Activ4Activity QTL 43.710.00023locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)16133418960Rat
1354584Despr6Despair related QTL 63.10.0067locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16139533930Rat
2303566Bw90Body weight QTL 902body mass (VT:0001259)body weight (CMO:0000012)16139533930Rat
631561Hcuc2Hepatic copper content QTL 22.8hepatic copper amount (VT:0003065)liver total copper weight (CMO:0001507)16139533949Rat
6903319Bw114Body weight QTL 1142.70.0037body mass (VT:0001259)body weight (CMO:0000012)16143534949Rat
7411664Foco30Food consumption QTL 30110.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)16144588133Rat
1354625Despr7Despair related QTL 73.160.016locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16144977551Rat
1600378Arunc4Aerobic running capacity QTL 40.03exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)1638024580345693Rat
2293343Glom16Glomerulus QTL 167.4kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1683223646053497Rat
2312660Bw95Body weight QTL 950.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)1683223659492508Rat
2312663Slep9Serum leptin concentration QTL 90.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1683223659492508Rat
2312666Insul16Insulin level QTL 160.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1683223659492508Rat
2312669Stl23Serum triglyceride level QTL 230.01blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1683223659492508Rat
2301406Kidm39Kidney mass QTL 390.002kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)16285170915884239Rat
1300133Rf24Renal function QTL 243.64blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)16338015021361552Rat
2306902Bp339Blood pressure QTL 3390.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16338015043025077Rat
737825Alc13Alcohol consumption QTL 134.5consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16422760916039848Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)16422760943025077Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16422760943025077Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)16422760943025077Rat
737819Hcas4Hepatocarcinoma susceptibility QTL 44.43liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)16422760946975965Rat
61405Niddm6Non-insulin dependent diabetes mellitus QTL 63.660.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)16422760948972724Rat
61338Bp23Blood pressure QTL 234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16422760949227609Rat
737826Alc11Alcohol consumption QTL 113.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16422760960252231Rat
61372Bp40Blood pressure QTL 402.2blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)16422773017696785Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:118
Count of miRNA genes:89
Interacting mature miRNAs:95
Transcripts:ENSRNOT00000021475
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 26 22 12 18 12 66 22 34 11
Low 1 17 35 29 1 29 8 11 8 13 7 8
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000021475   ⟹   ENSRNOP00000021473
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl165,656,773 - 5,702,140 (+)Ensembl
Rnor_6.0 Ensembl166,542,216 - 6,587,619 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000111266   ⟹   ENSRNOP00000096529
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl165,656,925 - 5,702,140 (+)Ensembl
RefSeq Acc Id: NM_001191831   ⟹   NP_001178760
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2165,656,925 - 5,698,382 (+)NCBI
Rnor_6.0166,542,415 - 6,583,856 (+)NCBI
Rnor_5.0166,476,320 - 6,517,715 (+)NCBI
Celera169,490,489 - 9,531,406 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039094617   ⟹   XP_038950545
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2165,656,788 - 5,702,151 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001178760 (Get FASTA)   NCBI Sequence Viewer  
  NP_001398681 (Get FASTA)   NCBI Sequence Viewer  
  XP_038950545 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL88997 (Get FASTA)   NCBI Sequence Viewer  
  EDL88998 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001178760   ⟸   NM_001191831
- Sequence:
RefSeq Acc Id: ENSRNOP00000021473   ⟸   ENSRNOT00000021475
RefSeq Acc Id: XP_038950545   ⟸   XM_039094617
- Peptide Label: isoform X1
RefSeq Acc Id: ENSRNOP00000096529   ⟸   ENSRNOT00000111266
Protein Domains
mRNA_decap_C

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4AE80-F1-model_v2 AlphaFold D4AE80 1-601 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1561298 AgrOrtholog
BioCyc Gene G2FUF-12194 BioCyc
Ensembl Genes ENSRNOG00000016015 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000021473 ENTREZGENE
  ENSRNOP00000021473.4 UniProtKB/TrEMBL
  ENSRNOP00000096529 ENTREZGENE
  ENSRNOP00000096529.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000021475 ENTREZGENE
  ENSRNOT00000021475.6 UniProtKB/TrEMBL
  ENSRNOT00000111266 ENTREZGENE
  ENSRNOT00000111266.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.29.30 UniProtKB/TrEMBL
InterPro DCP1 UniProtKB/TrEMBL
  mRNA_decap_C UniProtKB/TrEMBL
  PH_like_dom UniProtKB/TrEMBL
KEGG Report rno:361109 UniProtKB/TrEMBL
NCBI Gene 361109 ENTREZGENE
PANTHER DCP1 UniProtKB/TrEMBL
Pfam DCP1 UniProtKB/TrEMBL
  mRNA_decap_C UniProtKB/TrEMBL
PhenoGen Dcp1a PhenoGen
UniProt A0A8I6APY3_RAT UniProtKB/TrEMBL
  D4AE80_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-09-16 Dcp1a  decapping mRNA 1A  Dcp1a  DCP1 decapping enzyme homolog A (S. cerevisiae)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-06-02 Dcp1a  DCP1 decapping enzyme homolog A (S. cerevisiae)  test2  test2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-05-08     Dcp1a  DCP1 decapping enzyme homolog A (S. cerevisiae)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-03 Dcp1a  DCP1 decapping enzyme homolog A (S. cerevisiae)  Dcp1a_predicted  DCP1 decapping enzyme homolog A (S. cerevisiae) (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 Dcp1a_predicted  DCP1 decapping enzyme homolog A (S. cerevisiae) (predicted)  RGD1561298_predicted  similar to transcription factor (predicted)  Symbol and Name updated 1299863 APPROVED
2006-03-07 RGD1561298_predicted  similar to transcription factor (predicted)  LOC361109  similar to transcription factor  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC361109  similar to transcription factor      Symbol and Name status set to provisional 70820 PROVISIONAL