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Gene: Rft1 (RFT1 homolog) Rattus norvegicus

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Symbol:

Rft1

Name:

RFT1 homolog

RGD ID:

1562654

Description:

Predicted to be involved in dolichol-linked oligosaccharide biosynthetic process and glycolipid translocation. Predicted to be active in endoplasmic reticulum membrane. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation In. Orthologous to human RFT1 (RFT1 homolog); PARTICIPATES IN N-linked glycan biosynthetic pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; gentamycin.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC290552; RFT1 homolog (S. cerevisiae); RGD1562654; similar to RFT1 homolog

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	RFT1 (RFT1 homolog)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Rft1 (RFT1 homolog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Rft1 (RFT1 glycolipid translocator homolog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	RFT1 (RFT1 glycolipid translocator homolog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	RFT1 (RFT1 homolog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Rft1 (RFT1 glycolipid translocator homolog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	RFT1 (RFT1 homolog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	RFT1 (RFT1 glycolipid translocator homolog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Rft1 (RFT1 glycolipid translocator homolog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	PDE6B (phosphodiesterase 6B)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	RFT1 (RFT1 homolog)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Rft1 (RFT1 homolog)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	rft1 (RFT1 homolog)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG3149	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	RFT1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	ZK180.3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	rft1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	16	5,833,521 - 5,867,578 (+)	NCBI		GRCr8
mRatBN7.2	16	5,827,063 - 5,861,120 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	5,827,088 - 5,861,120 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	16	5,839,068 - 5,873,039 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	16	6,984,519 - 7,018,488 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	16	5,837,681 - 5,871,654 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	16	6,712,387 - 6,746,711 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	6,712,389 - 6,746,696 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	16	6,645,356 - 6,679,690 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	16	6,058,924 - 6,092,957 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	16	9,328,230 - 9,362,151 (-)	NCBI		Celera
Cytogenetic Map	16	p16	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Rft1	Rat	autoimmune lymphoproliferative syndrome type 3		ISO	RGD:1342907	8554872	ClinVar Annotator: match by term: Autoimmune lymphoproliferative syndrome, type III	ClinVar	PMID:11976687\|PMID:23319571\|PMID:23430113\|PMID:28492532
Rft1	Rat	congenital disorder of glycosylation		ISO	RGD:1342907	8554872	ClinVar Annotator: match by term: Congenital disorder of glycosylation	ClinVar
Rft1	Rat	congenital disorder of glycosylation In		ISO	RGD:1342907	8554872	ClinVar Annotator: match by term: CDG In \| ClinVar Annotator: match by term: Congenital disorder more ...	ClinVar	PMID:16199547\|PMID:17576681\|PMID:18313027\|PMID:19267216\|PMID:19701946\|PMID:19856127\|PMID:23111317\|PMID:25640679\|PMID:25741868\|PMID:26892341\|PMID:27172925\|PMID:28492532\|PMID:28940097\|PMID:28940310\|PMID:29923091\|PMID:30071302\|PMID:30653653\|PMID:31231135\|PMID:33023636\|PMID:37712079\|PMID:38374194\|PMID:9536098
Rft1	Rat	genetic disease		ISO	RGD:1342907	8554872	ClinVar Annotator: match by term: Inborn genetic diseases	ClinVar	PMID:25741868\|PMID:26892341\|PMID:28492532\|PMID:31231135\|PMID:33023636\|PMID:38374194

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Rft1	Rat	congenital disorder of glycosylation In		ISO	RGD:1342907	11554173	CTD Direct Evidence: marker/mechanism	CTD

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Rft1	Rat	congenital disorder of glycosylation In		ISO	RGD:1342907	7240710		OMIM

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Rft1	Rat	(-)-epigallocatechin 3-gallate	multiple interactions	ISO	RGD:1342907	6480464	[potassium chromate(VI) co-treated with epigallocatechin gallate] results in decreased expression of RFT1 mRNA	CTD	PMID:22079256
Rft1	Rat	17beta-estradiol	increases expression	ISO	RGD:1617977	6480464	Estradiol results in increased expression of RFT1 mRNA	CTD	PMID:39298647
Rft1	Rat	2,3,7,8-tetrachlorodibenzodioxine	multiple interactions	ISO	RGD:1617977	6480464	Tetrachlorodibenzodioxin promotes the reaction [AHR protein binds to RFT1 promoter]	CTD	PMID:19654925
Rft1	Rat	2,3,7,8-tetrachlorodibenzodioxine	increases expression	EXP		6480464	Tetrachlorodibenzodioxin results in increased expression of RFT1 mRNA	CTD	PMID:33387578
Rft1	Rat	2,3,7,8-tetrachlorodibenzodioxine	affects expression	ISO	RGD:1617977	6480464	Tetrachlorodibenzodioxin affects the expression of RFT1 mRNA	CTD	PMID:21570461
Rft1	Rat	3-isobutyl-1-methyl-7H-xanthine	multiple interactions	ISO	RGD:1342907	6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol F] more ...	CTD	PMID:28628672
Rft1	Rat	acrylamide	decreases expression	ISO	RGD:1342907	6480464	Acrylamide results in decreased expression of RFT1 mRNA	CTD	PMID:32763439
Rft1	Rat	beta-lapachone	increases expression	ISO	RGD:1342907	6480464	beta-lapachone results in increased expression of RFT1 mRNA	CTD	PMID:38218311
Rft1	Rat	bisphenol A	increases expression	EXP		6480464	bisphenol A results in increased expression of RFT1 mRNA	CTD	PMID:25181051
Rft1	Rat	bisphenol A	increases methylation	EXP		6480464	bisphenol A results in increased methylation of RFT1 gene	CTD	PMID:28505145
Rft1	Rat	bisphenol F	multiple interactions	ISO	RGD:1342907	6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol F] more ...	CTD	PMID:28628672
Rft1	Rat	cobalt dichloride	decreases expression	ISO	RGD:1342907	6480464	cobaltous chloride results in decreased expression of RFT1 mRNA	CTD	PMID:19320972
Rft1	Rat	copper(II) sulfate	decreases expression	ISO	RGD:1342907	6480464	Copper Sulfate results in decreased expression of RFT1 mRNA	CTD	PMID:19549813
Rft1	Rat	cyclosporin A	increases expression	ISO	RGD:1342907	6480464	Cyclosporine results in increased expression of RFT1 mRNA	CTD	PMID:27989131
Rft1	Rat	DDE	increases expression	ISO	RGD:1342907	6480464	Dichlorodiphenyl Dichloroethylene results in increased expression of RFT1 mRNA	CTD	PMID:38568856
Rft1	Rat	dexamethasone	multiple interactions	ISO	RGD:1342907	6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol F] more ...	CTD	PMID:28628672
Rft1	Rat	gentamycin	decreases expression	EXP		6480464	Gentamicins results in decreased expression of RFT1 mRNA	CTD	PMID:33387578
Rft1	Rat	GSK-J4	decreases expression	ISO	RGD:1342907	6480464	GSK-J4 results in decreased expression of RFT1 mRNA	CTD	PMID:29301935
Rft1	Rat	indometacin	multiple interactions	ISO	RGD:1342907	6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol F] more ...	CTD	PMID:28628672
Rft1	Rat	ivermectin	decreases expression	ISO	RGD:1342907	6480464	Ivermectin results in decreased expression of RFT1 protein	CTD	PMID:32959892
Rft1	Rat	ketoconazole	decreases expression	ISO	RGD:1342907	6480464	Ketoconazole results in decreased expression of RFT1 mRNA	CTD	PMID:36621641
Rft1	Rat	malathion	decreases expression	ISO	RGD:1342907	6480464	Malathion results in decreased expression of RFT1 mRNA	CTD	PMID:37047231
Rft1	Rat	methapyrilene	decreases expression	EXP		6480464	Methapyrilene results in decreased expression of RFT1 mRNA	CTD	PMID:30467583
Rft1	Rat	methyl methanesulfonate	decreases expression	ISO	RGD:1342907	6480464	Methyl Methanesulfonate results in decreased expression of RFT1 mRNA	CTD	PMID:23649840
Rft1	Rat	potassium chromate	decreases expression	ISO	RGD:1342907	6480464	potassium chromate(VI) results in decreased expression of RFT1 mRNA	CTD	PMID:22079256
Rft1	Rat	potassium chromate	multiple interactions	ISO	RGD:1342907	6480464	[potassium chromate(VI) co-treated with epigallocatechin gallate] results in decreased expression of RFT1 mRNA	CTD	PMID:22079256
Rft1	Rat	resveratrol	multiple interactions	ISO	RGD:1342907	6480464	[Plant Extracts co-treated with Resveratrol] results in increased expression of RFT1 mRNA	CTD	PMID:23557933
Rft1	Rat	sodium arsenite	decreases expression	ISO	RGD:1342907	6480464	sodium arsenite results in decreased expression of RFT1 mRNA	CTD	PMID:38568856
Rft1	Rat	sodium dodecyl sulfate	decreases expression	ISO	RGD:1342907	6480464	Sodium Dodecyl Sulfate results in decreased expression of RFT1 mRNA	CTD	PMID:31734321
Rft1	Rat	thioacetamide	decreases expression	EXP		6480464	Thioacetamide results in decreased expression of RFT1 mRNA	CTD	PMID:34492290
Rft1	Rat	thiram	decreases expression	ISO	RGD:1342907	6480464	Thiram results in decreased expression of RFT1 mRNA	CTD	PMID:38568856
Rft1	Rat	trichloroethene	increases expression	EXP		6480464	Trichloroethylene results in increased expression of RFT1 mRNA	CTD	PMID:33387578
Rft1	Rat	triphenyl phosphate	increases expression	EXP		6480464	triphenyl phosphate results in increased expression of RFT1 mRNA	CTD	PMID:30589522
Rft1	Rat	trovafloxacin	decreases expression	ISO	RGD:1617977	6480464	trovafloxacin results in decreased expression of RFT1 mRNA	CTD	PMID:35537566
Rft1	Rat	urethane	decreases expression	ISO	RGD:1342907	6480464	Urethane results in decreased expression of RFT1 mRNA	CTD	PMID:28818685
Rft1	Rat	valproic acid	decreases methylation	ISO	RGD:1342907	6480464	Valproic Acid results in decreased methylation of RFT1 gene	CTD	PMID:29154799

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Rft1	Rat	dolichol-linked oligosaccharide biosynthetic process	involved_in	ISO	RGD:1342907	1624291	PMID:18313027	RGD	PMID:18313027
Rft1	Rat	dolichol-linked oligosaccharide biosynthetic process	involved_in	IEA	UniProtKB:Q96AA3\|ensembl:ENSP00000296292	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Rft1	Rat	dolichol-linked oligosaccharide biosynthetic process	involved_in	IEA	InterPro:IPR007594	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
Rft1	Rat	glycolipid translocation	involved_in	ISO	RGD:1342907	1624291	UniProtKB:P38206 PMID:18313027	RGD	PMID:18313027
Rft1	Rat	glycolipid translocation	involved_in	IEA	UniProtKB:Q96AA3\|ensembl:ENSP00000296292	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Rft1	Rat	glycolipid translocation	involved_in	IBA	PANTHER:PTN000319164\|SGD:S000000116\|UniProtKB:Q96AA3	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Rft1	Rat	protein N-linked glycosylation	involved_in	ISO	RGD:1342907	1624291	PMID:18313027	RGD	PMID:18313027
Rft1	Rat	protein N-linked glycosylation	involved_in	IEA	UniProtKB:Q96AA3\|ensembl:ENSP00000296292	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Rft1	Rat	endoplasmic reticulum	located_in	IEA	UniProtKB-KW:KW-0256	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Rft1	Rat	endoplasmic reticulum membrane	is_active_in	ISO	RGD:1342907	1624291	UniProtKB:P38206 PMID:18313027	RGD	PMID:18313027
Rft1	Rat	endoplasmic reticulum membrane	is_active_in	IEA	UniProtKB:Q96AA3\|ensembl:ENSP00000296292	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Rft1	Rat	endoplasmic reticulum membrane	located_in	IEA	UniProtKB-SubCell:SL-0097	1600115	GO_REF:0000044	UniProt	GO_REF:0000044
Rft1	Rat	endoplasmic reticulum membrane	is_active_in	IBA	PANTHER:PTN000319164\|SGD:S000000116\|UniProtKB:Q96AA3	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Rft1	Rat	membrane	located_in	IEA	UniProtKB-KW:KW-0472	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Rft1	Rat	membrane	located_in	IEA	UniRule:UR000995769	1600115	GO_REF:0000104	UniProt	GO_REF:0000104
Rft1	Rat	membrane	located_in	IEA	InterPro:IPR007594	1600115	GO_REF:0000002	InterPro	GO_REF:0000002

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Rft1	Rat	protein binding	enables	ISO	RGD:1342907	1624291	UniProtKB:O95859\|UniProtKB:P15941-11\|UniProtKB:P34972\|UniProtKB:P50876\|UniProtKB:Q13520\|UniProtKB:Q8NFU1\|UniProtKB:Q96BA8\|UniProtKB:Q9Y282\|UniProtKB:Q9Y320 PMID:32296183	RGD	PMID:32296183

Imported Annotations - KEGG (archival)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Rft1	Rat	N-linked glycan biosynthetic pathway		IEA		6907045		KEGG	rno:00510

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
3.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Rft1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	16	5,833,521 - 5,867,578 (+)	NCBI		GRCr8
mRatBN7.2	16	5,827,063 - 5,861,120 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	5,827,088 - 5,861,120 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	16	5,839,068 - 5,873,039 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	16	6,984,519 - 7,018,488 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	16	5,837,681 - 5,871,654 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	16	6,712,387 - 6,746,711 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	6,712,389 - 6,746,696 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	16	6,645,356 - 6,679,690 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	16	6,058,924 - 6,092,957 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	16	9,328,230 - 9,362,151 (-)	NCBI		Celera
Cytogenetic Map	16	p16	NCBI

RFT1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	53,066,853 - 53,130,435 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	53,066,853 - 53,130,453 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	3	53,122,499 - 53,164,451 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	53,099,850 - 53,139,503 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	3	53,099,850 - 53,139,503	NCBI
Celera	3	53,089,550 - 53,131,500 (-)	NCBI		Celera
Cytogenetic Map	3	p21.1	NCBI
HuRef	3	53,171,837 - 53,213,789 (-)	NCBI		HuRef
CHM1_1	3	53,074,111 - 53,116,058 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	3	53,099,771 - 53,163,318 (-)	NCBI		T2T-CHM13v2.0

Rft1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	14	30,375,041 - 30,413,274 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	14	30,376,317 - 30,413,274 (+)	Ensembl		GRCm39 Ensembl
GRCm38	14	30,654,340 - 30,691,317 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	14	30,654,360 - 30,691,317 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	14	31,467,561 - 31,504,503 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	14	29,483,384 - 29,520,326 (+)	NCBI		MGSCv36	mm8
Celera	14	26,912,154 - 26,949,146 (+)	NCBI		Celera
Cytogenetic Map	14	B	NCBI
cM Map	14	18.9	NCBI

Rft1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955430	3,052,368 - 3,096,726 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955430	3,055,766 - 3,096,501 (-)	NCBI	ChiLan1.0	ChiLan1.0

RFT1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	53,063,258 - 53,126,908 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	53,068,029 - 53,131,679 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	53,019,763 - 53,073,401 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	54,257,737 - 54,296,529 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	54,257,737 - 54,296,529 (-)	Ensembl	panpan1.1		panPan2

RFT1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	36,781,782 - 36,822,209 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	36,717,944 - 36,757,495 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	37,059,731 - 37,099,398 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	20	37,059,755 - 37,103,495 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	20	36,496,396 - 36,535,960 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	36,858,183 - 36,898,047 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	37,111,842 - 37,149,384 (+)	NCBI		UU_Cfam_GSD_1.0

Rft1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	170,669,371 - 170,718,220 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936473	3,814,112 - 3,856,792 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936473	3,807,895 - 3,856,760 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RFT1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	35,207,145 - 35,257,795 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	35,196,844 - 35,257,806 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

RFT1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	22	14,482,709 - 14,525,665 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	22	14,479,361 - 14,525,618 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666041	152,369,646 - 152,413,962 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rft1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624822	4,091,523 - 4,130,083 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624822	4,081,012 - 4,140,702 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Rft1
183 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	329
Count of miRNA genes:	214
Interacting mature miRNAs:	245
Transcripts:	ENSRNOT00000035542
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
631561	Hcuc2	Hepatic copper content QTL 2	2.8		liver copper amount (VT:0003065)	liver total copper weight (CMO:0001507)	16	1	39533949	Rat
1582235	Insul8	Insulin level QTL 8	3.3	0.0063	blood insulin amount (VT:0001560)	calculated serum insulin level (CMO:0000359)	16	1	26727669	Rat
2307172	Activ4	Activity QTL 4	3.71	0.00023	locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	16	1	33418960	Rat
1354584	Despr6	Despair related QTL 6	3.1	0.0067	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	16	1	39533930	Rat
1357403	Slep4	Serum leptin concentration QTL 4	3.91		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	16	1	9639137	Rat
2302380	Slep6	Serum leptin concentration QTL 6	3.36		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	16	1	32139025	Rat
737819	Hcas4	Hepatocarcinoma susceptibility QTL 4	4.43		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	16	4227609	46975965	Rat
9590151	Scort8	Serum corticosterone level QTL 8	8.45	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	16	1	30836262	Rat
1354625	Despr7	Despair related QTL 7	3.16	0.016	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	16	1	44977551	Rat
61338	Bp23	Blood pressure QTL 23	4.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	16	4227609	49227609	Rat
61405	Niddm6	Non-insulin dependent diabetes mellitus QTL 6	3.66	0.001	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	16	4227609	48972724	Rat
631830	Alc7	Alcohol consumption QTL 7	2.9		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	16	1	26727669	Rat
7411664	Foco30	Food consumption QTL 30	11	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	16	1	44588133	Rat
1600378	Arunc4	Aerobic running capacity QTL 4		0.03	exercise endurance trait (VT:0002332)	maximum distance run on treadmill (CMO:0001406)	16	380245	80345693	Rat
70183	BpQTLcluster13	Blood pressure QTL cluster 13	3.654		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	16	4227609	43025077	Rat
1600369	Hcas8	Hepatocarcinoma susceptibility QTL 8			liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	16	1	22477621	Rat
737826	Alc11	Alcohol consumption QTL 11	3.2		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	16	4227609	60252231	Rat
737825	Alc13	Alcohol consumption QTL 13	4.5		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	16	4227609	16039848	Rat
2303566	Bw90	Body weight QTL 90	2		body mass (VT:0001259)	body weight (CMO:0000012)	16	1	39533930	Rat
2312663	Slep9	Serum leptin concentration QTL 9		0.001	blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	16	832236	59492508	Rat
2306902	Bp339	Blood pressure QTL 339		0.01	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	16	3380150	43025077	Rat
1300133	Rf24	Renal function QTL 24	3.64		blood creatinine amount (VT:0005328)	creatinine clearance (CMO:0000765)	16	3380150	21361552	Rat
2312660	Bw95	Body weight QTL 95		0.05	inguinal fat pad mass (VT:0010424)	inguinal fat pad weight to body weight ratio (CMO:0001253)	16	832236	59492508	Rat
2312666	Insul16	Insulin level QTL 16		0.01	blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	16	832236	59492508	Rat
634355	Rends4	Renal damage susceptibility QTL 4		0.05	kidney blood vessel morphology trait (VT:0000530)	organ lesion measurement (CMO:0000677)	16	1	26727669	Rat
61372	Bp40	Blood pressure QTL 40	2.2		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	16	4227730	17696785	Rat
2293343	Glom16	Glomerulus QTL 16	7.4		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	16	832236	46053497	Rat
2301406	Kidm39	Kidney mass QTL 39		0.002	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	16	2851709	15884239	Rat
6903319	Bw114	Body weight QTL 114	2.7	0.0037	body mass (VT:0001259)	body weight (CMO:0000012)	16	1	43534949	Rat
2312669	Stl23	Serum triglyceride level QTL 23		0.01	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	16	832236	59492508	Rat

RH139293

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	5,845,870 - 5,846,005 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	6,731,172 - 6,731,306	NCBI	Rnor6.0
Rnor_5.0	16	6,664,151 - 6,664,285	UniSTS	Rnor5.0
RGSC_v3.4	16	6,077,707 - 6,077,841	UniSTS	RGSC3.4
Celera	16	9,343,314 - 9,343,448	UniSTS
RH 3.4 Map	16	31.8	UniSTS
Cytogenetic Map	16	p16	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31


RefSeq Transcripts	NM_001135866	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006252581	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039094264	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275133	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005494551	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH474046	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000016	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000035542 ⟹ ENSRNOP00000035354

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	16	5,827,088 - 5,861,105 (+)	Ensembl
Rnor_6.0 Ensembl	16	6,712,389 - 6,746,696 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000102234 ⟹ ENSRNOP00000090760

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	16	5,827,122 - 5,861,114 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000107539 ⟹ ENSRNOP00000076698

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	16	5,827,117 - 5,861,120 (+)	Ensembl

RefSeq Acc Id:

NM_001135866 ⟹ NP_001129338

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	5,833,546 - 5,867,578 (+)	NCBI
mRatBN7.2	16	5,827,088 - 5,861,120 (+)	NCBI
Rnor_6.0	16	6,712,389 - 6,746,711 (+)	NCBI
Rnor_5.0	16	6,645,356 - 6,679,690 (+)	NCBI
RGSC_v3.4	16	6,058,924 - 6,092,957 (+)	RGD
Celera	16	9,328,230 - 9,362,151 (-)	RGD

Sequence:

show sequence

CGACGAAGCAGGCGCGGGGCGCGTTTCCTCCTTTGAGCCGAGCCTCTGAGGCTATGGGCAGCCAGGAGGTACTGGGCCAGGCGGCCCGGCTGGCCTCCTCGGGTCTCCTGCTGCAGGTCTTGTTCCGA
TTAATCACCTTTGTCTTGAATGCATTTATTCTTCGCTTCCTGTCAAAGGAGATTGTGGGCGTAGTGAATGTCAGACTAACACTGCTTTACTCAACCACCATCTTCCTGGCCCGGGAGGCCTTCCGAAG
AGCTTGTCTGAGTGGGGGTACCCAGCGGGACTGGACTCAGACCCTCAACCTCCTGTGGCTAACTGTCCCCCTGGGTATATTTTGGTCCTTGTGCTTGGGCTGGGTCTGGTTGCAGTTGCTTGAAGTAC
CTGATCCAAATGTGGTCCCCTACTATGGAACTGGCGTGCTGCTCTTTGGTCTCTCAGCAGTCGTGGAACTTCTGGGAGAGCCTTTTTGGGTCTTGGCGCAAGCACATATGTTTGTTAAACTCAAGGTA
CTTGCTGAGAGCATGTCGGTCATCCTCAGGAGTGTGCTGACGGCTCTTCTGGTCCTGTGGCTGCCTCACTGGGGTCTGTACATCTTTTCTTTGGCTCAGCTTCTCTACACGGCTGTCCTGGTGCTCTG
TTATATGCTCTATTTAATAAAACTACTGCGTTCCCCAGAATCATCCAAGCAACTGACTCTTCCTATCTCCAAAGTAACACAACTGTTGCCCAGTATTTCAAGAAGAAAAGCCTTTGTCAATTGGAACG
AGGCTAGGTTGACTTGGAGCTTTTTCAAACAGTCATTCTTGAAACAGATTTTGACAGAAGGTGAGCGATACGTGATGACATTTTTGAATGTATTAAACTTTGGCGACCAGGGTATATACGATATAGTG
AATAACCTCGGCTCCCTTGTGGCCAGGCTAATTTTCCAGCCAGTAGAGGAGAGTTTCTATATATTCTTTGCTAAAGTGCTAGAGAGGGAGAAGGACGCCTCACTTCAGAAGCAGGATGATGTTGCTGT
GGCTGCCGCTGTTTTGGAGTCCCTCCTCAAGCTGGCCTTGCTGACTGGACTGACCGTCACTGTTTTTGGCTTTGCCTATTCTCAGTTGGCTTTGGACATCTATGGAGGAGCCATGCTTAGTTCGGGAT
CTGGCCCTGTGTTGATGCGGTGCTATTGCCTCTATGTCCTCCTGCTTGCCGTCAATGGTGTGACAGAGTGCTTCACCTTTGCTGCCATGAGCAAAGAGGACGTTGACAGGTACAATTTCACCATGCTG
GCACTGTCCTCCTCGTTTTTAGTCTTATCCTACCTGCTGACCAGTTGGTGTGGCAGTGTGGGCTTCATCATGGCCAACTGCTTTAACATGGGCATCCGGATCACACAGAGCCTTTCCTTCATCCATCA
CTACTTCCAAGAGAGCCCCCACAGACCGCTGGCTGGCCTGCTCCTGTCACCAGTTCTTCTTGGAGTATTCGTCCTCAGTGCGGGCATTACGAGTGTCTCAGAGGCATTCCTCTGCTGTGAGCGGGGCT
GGCCGGCTAGGCTGGCACACATTGCTGTGGGGACCATCTGCTTAGGAGTGACTCTTGGGACAGCGTTCCTCACAGAGACCAAGCTGATCCACTTTCTCAGGACTCAGTTGGGTAGATCCAGACTTGGT
GACAAAATGACATGACTTTGATGATGCTCTGGCAGTTTTGGTAGCAGACCCAGCATCAAGCAGTTCTTGGACAGGCATTGCTGTGCGAAAGCCGTGCTATGGAGTCAGAATCACCCTGGAGGTGAGGC
TGCAGAGGGGAGATCATCAGTCCAAGGCTTCCTGCCAGAGGAATGTCCTTTCAAGTGAAGACCAAAAGCTGGTTTTGTTAATGAATCAATTCCCTTTGAGGGTGATTGACCTTTGAAGTTACATCTTT
TAACAAACTCTCTTAGATGTTAATATTTAGCCATTGTTTGTTTGCCCAAGAAAAACCAATGTAGCCATTGACCTGCCACAAGAATGGTTAGTTTCTTCTATAAAAGAAGTAAGGAGCCTCTGAATTTA
CACACTGAACATCCACACCTTTAATCCCAGCACTCAAGAGGCAGAGGCAGGTGGGTCTCCAAGTTCCAGGACAGCTGGAACTGTCTTAAAAAAACAAATATATATAAAAAAAGAAAAA

hide sequence

RefSeq Acc Id:

XM_006252581 ⟹ XP_006252643

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	5,833,521 - 5,866,864 (+)	NCBI
mRatBN7.2	16	5,827,063 - 5,860,426 (+)	NCBI
Rnor_6.0	16	6,712,387 - 6,746,050 (+)	NCBI
Rnor_5.0	16	6,645,356 - 6,679,690 (+)	NCBI

Sequence:

show sequence

CGCGACGAAGCAGGCGCGGGGCGCGTTTCCTCCTTTGAGCCGAGCCTCTGAGGCTATGGGCAGCCAGGAGGTACTGGGCCAGGCGGCCCGGCTGGCCTCCTCGGGTCTCCTGCTGCAGGTCTTGTTCC
GATTAATCACCTTTGTCTTGAATGCATTTATTCTTCGCTTCCTGTCAAAGGAGATTGTGGGCGTAGTGAATGTCAGACTAACACTGCTTTACTCAACCACCATCTTCCTGGCCCGGGAGGCCTTCCGA
AGAGCTTGTCTGAGTGGGGGTACCCAGCGGGACTGGACTCAGACCCTCAACCTCCTGTGGCTAACTGTCCCCCTGGGTATATTTTGGTCCTTGTGCTTGGGCTGGGTCTGGTTGCAGTTGCTTGAAGT
ACCTGATCCAAATGTGGTCCCCTACTATGGAACTGGCGTGCTGCTCTTTGGTCTCTCAGCAGTCGTGGAACTTCTGGGAGAGCCTTTTTGGGTCTTGGCGCAAGCACATATGTTTGTTAAACTCAAGG
TACTTGCTGAGAGCATGTCGGTCATCCTCAGGAGTGTGCTGACGGCTCTTCTGGTCCTGTGGCTGCCTCACTGGGGTCTGTACATCTTTTCTTTGGCTCAGCTTCTCTACACGGCTGTCCTGGTGCTC
TGTTATATGCTCTATTTAATAAAACTACTGCGTTCCCCAGAATCATCCAAGCAACTGACTCTTCCTATCTCCAAAGTAACACAACTGTTGCCCAGTATTTCAAGAAGAAAAGCCTTTGTCAATTGGAA
CGAGGCTAGGTTGACTTGGAGCTTTTTCAAACAGTCATTCTTGAAACAGATTTTGACAGAAGGTGAGCGATACGTGATGACATTTTTGAATGTATTAAACTTTGGCGACCAGGGTATATACGATATAG
TGAATAACCTCGGCTCCCTTGTGGCCAGGCTAATTTTCCAGCCAGTAGAGGAGAGTTTCTATATATTCTTTGCTAAAGTGCTAGAGAGGGAGAAGGACGCCTCACTTCAGAAGCAGGATGATGTTGCT
GTGGCTGCCGCTGTTTTGGAGTCCCTCCTCAAGCTGGCCTTGCTGACTGGACTGACCGTCACTGTTTTTGGCTTTGCCTATTCTCAGTTGGCTTTGGACATCTATGGAGGAGCCATGCTTAGTTCGGG
ATCTGGCCCTGTGTTGATGCGGTGCTATTGCCTCTATGTCCTCCTGCTTGCCGTCAATGGTGTGACAGAGTGCTTCACCTTTGCTGCCATGAGCAAAGAGGACGTTGACAGGTACAATTTCACCATGC
TGGCACTGTCCTCCTCGTTTTTAGTCTTATCCTACCTGCTGACCAGTTGGTGTGGCAGTGTGGGCTTCATCATGGCCAACTGCTTTAACATGGGCATCCGGATCACACAGAGCCTTTCCTTCATCCAT
CACTACTTCCAAGAGAGCCCCCACAGACCGCTGGCTGGCCTGCTCCTGTCACCAGTTCTTCTTGGAGTATTCGTCCTCAGTGCGGGCATTACGAGTGTCTCAGAGAAACCGGTTGACAGGGCTGGGGA
GATGGCTCAGTGAGAACAAGCACTGAGTACAAGCACTGCCTATCCTGAGGACCCAGGCTCAGTTCTCAGCACCCACATGGTGACTCATAACCTCCTGTAACTTCAGTTCTAGTGGATCGACTTTTCTG
GTTTTTAAAGGCCTAGGGCACATACACAGAGCACAGTTATACACGTGTTTATACACATAAATAAATCTTAAAAAAGAGAAGCTGGATGATAACTTCTTTCCTTGGTTTATCTGGCAGTGACAACAGTT
TCTTT

hide sequence

RefSeq Acc Id:

XM_039094264 ⟹ XP_038950192

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	5,833,521 - 5,866,339 (+)	NCBI
mRatBN7.2	16	5,827,063 - 5,859,880 (+)	NCBI

RefSeq Acc Id:

XM_063275133 ⟹ XP_063131203

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	5,840,130 - 5,867,578 (+)	NCBI

RefSeq Acc Id:

XR_005494551

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	5,833,521 - 5,858,859 (+)	NCBI
mRatBN7.2	16	5,827,063 - 5,852,402 (+)	NCBI


Protein RefSeqs	NP_001129338	(Get FASTA)	NCBI Sequence Viewer
	XP_006252643	(Get FASTA)	NCBI Sequence Viewer
	XP_038950192	(Get FASTA)	NCBI Sequence Viewer
	XP_063131203	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL88985	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000035354
	ENSRNOP00000035354.4
	ENSRNOP00000076698.1
	ENSRNOP00000090760.1
	ENSRNOP00000106442

RefSeq Acc Id:

NP_001129338 ⟸ NM_001135866

- UniProtKB:

D4A6W4 (UniProtKB/TrEMBL), A6KG28 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MGSQEVLGQAARLASSGLLLQVLFRLITFVLNAFILRFLSKEIVGVVNVRLTLLYSTTIFLAREAFRRACLSGGTQRDWTQTLNLLWLTVPLGIFWSLCLGWVWLQLLEVPDPNVVPYYGTGVLLFGL
SAVVELLGEPFWVLAQAHMFVKLKVLAESMSVILRSVLTALLVLWLPHWGLYIFSLAQLLYTAVLVLCYMLYLIKLLRSPESSKQLTLPISKVTQLLPSISRRKAFVNWNEARLTWSFFKQSFLKQIL
TEGERYVMTFLNVLNFGDQGIYDIVNNLGSLVARLIFQPVEESFYIFFAKVLEREKDASLQKQDDVAVAAAVLESLLKLALLTGLTVTVFGFAYSQLALDIYGGAMLSSGSGPVLMRCYCLYVLLLAV
NGVTECFTFAAMSKEDVDRYNFTMLALSSSFLVLSYLLTSWCGSVGFIMANCFNMGIRITQSLSFIHHYFQESPHRPLAGLLLSPVLLGVFVLSAGITSVSEAFLCCERGWPARLAHIAVGTICLGVT
LGTAFLTETKLIHFLRTQLGRSRLGDKMT

hide sequence

RefSeq Acc Id:	XP_006252643 ⟸ XM_006252581
- Peptide Label:	isoform X1
- UniProtKB:	A6KG28 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGSQEVLGQAARLASSGLLLQVLFRLITFVLNAFILRFLSKEIVGVVNVRLTLLYSTTIFLARE AFRRACLSGGTQRDWTQTLNLLWLTVPLGIFWSLCLGWVWLQLLEVPDPNVVPYYGTGVLLFGLSAVVELLGEPFWVLAQAHMFVKLKVLAESMSVILRSVLTALLVLWLPHWGLYIFSLAQLLYTAV LVLCYMLYLIKLLRSPESSKQLTLPISKVTQLLPSISRRKAFVNWNEARLTWSFFKQSFLKQILTEGERYVMTFLNVLNFGDQGIYDIVNNLGSLVARLIFQPVEESFYIFFAKVLEREKDASLQKQD DVAVAAAVLESLLKLALLTGLTVTVFGFAYSQLALDIYGGAMLSSGSGPVLMRCYCLYVLLLAVNGVTECFTFAAMSKEDVDRYNFTMLALSSSFLVLSYLLTSWCGSVGFIMANCFNMGIRITQSLS FIHHYFQESPHRPLAGLLLSPVLLGVFVLSAGITSVSEKPVDRAGEMAQ hide sequence

Ensembl Acc Id:

ENSRNOP00000035354 ⟸ ENSRNOT00000035542

RefSeq Acc Id:	XP_038950192 ⟸ XM_039094264
- Peptide Label:	isoform X2

Ensembl Acc Id:

ENSRNOP00000090760 ⟸ ENSRNOT00000102234

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4A6W4-F1-model_v2	AlphaFold	D4A6W4	1-541	view protein structure

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

RGD ID:

13699910

Promoter ID:

EPDNEW_R10434

Type:

multiple initiation site

Name:

Rft1_1

Description:

RFT1 homolog

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	16	6,712,419 - 6,712,479	EPDNEW

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-12185	BioCyc
Ensembl Genes	ENSRNOG00000021805	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000035542	ENTREZGENE
	ENSRNOT00000035542.5	UniProtKB/TrEMBL
	ENSRNOT00000102234.1	UniProtKB/TrEMBL
	ENSRNOT00000107539.1	UniProtKB/TrEMBL
	ENSRNOT00000152898	ENTREZGENE
InterPro	RFT1	UniProtKB/TrEMBL
KEGG Report	rno:290552	UniProtKB/TrEMBL
NCBI Gene	290552	ENTREZGENE
PANTHER	PROTEIN RFT1 HOMOLOG	UniProtKB/TrEMBL
	RFT1	UniProtKB/TrEMBL
Pfam	Rft-1	UniProtKB/TrEMBL
PhenoGen	Rft1	PhenoGen
RatGTEx	ENSRNOG00000021805	RatGTEx
UniProt	A0A8I5YBU4_RAT	UniProtKB/TrEMBL
	A0A8I6AD77_RAT	UniProtKB/TrEMBL
	A6KG28	ENTREZGENE, UniProtKB/TrEMBL
	D4A6W4	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-07-17	Rft1	RFT1 homolog	Rft1	RFT1 homolog (S. cerevisiae)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Rft1	RFT1 homolog (S. cerevisiae)	Rft1_predicted	RFT1 homolog (S. cerevisiae) (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-30	Rft1_predicted	RFT1 homolog (S. cerevisiae) (predicted)	RGD1562654_predicted	similar to RFT1 homolog (predicted)	Symbol and Name updated	1299863	APPROVED
2006-03-07	RGD1562654_predicted	similar to RFT1 homolog (predicted)	LOC290552	similar to RFT1 homolog	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC290552	similar to RFT1 homolog			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

Imported Annotations - KEGG (archival)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

Imported Annotations - KEGG (archival)