Slep4 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Slep4 (Serum leptin concentration QTL 4) Rattus norvegicus

Symbol: Slep4
Name: Serum leptin concentration QTL 4
RGD ID: 1357403
Previously known as: Q16MS2
Trait: blood leptin amount   (VT:0005667)    
Measurement Type: serum leptin level   (CMO:0000780)    
LOD Score: 3.91
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2161 - 9,639,137RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0161 - 10,660,736RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0168,979,177 - 29,485,011RGDRnor5.0
RGSC_v3.4169,964,433 - 30,560,825RGDRGSC3.4
RGSC_v3.1169,964,431 - 30,560,823RGD
Cross Type: Not Available
Strains Crossed: WOKW DA/K 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View
obesity  (IDA)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
DA/K  (IEA)
WOKW  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Sex-specific and sex-independent quantitative trait loci for facets of the metabolic syndrome in WOKW rats. Kloting I, etal., Biochem Biophys Res Commun 2001 Jun 1;284(1):150-6.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
67383Prkcdprotein kinase C, delta1657692175799380Rat
70881Itih4inter-alpha-trypsin inhibitor heavy chain 41660805396095710Rat
3545Rbp3retinol binding protein 31692675389276006Rat
69250Wnt5aWnt family member 5A1636970323718230Rat
61864Npy4rneuropeptide Y receptor Y41694678019469057Rat
2377Colqcollagen like tail subunit of asymmetric acetylcholinesterase1667318506824973Rat
3113Msmbmicroseminoprotein, beta1673665367387124Rat
61999Sfmbt1Scm-like with four mbt domains 11658890466009860Rat
621506Mapk8mitogen-activated protein kinase 81686388978721960Rat
628670Ppifpeptidylprolyl isomerase F1612571971263919Rat
619849Hacl12-hydroxyacyl-CoA lyase 11668268816863027Rat
621275Arf4ADP-ribosylation factor 41618966921913267Rat
620387Pargpoly (ADP-ribose) glycohydrolase1674364297544276Rat
70973Cacna1dcalcium voltage-gated channel subunit alpha1 D1652271575521163Rat
631354Gnl3G protein nucleolar 31662074026213491Rat
619990Dnah12dynein, axonemal, heavy chain 121619363542092663Rat
727964Syt15synaptotagmin 151695324789543288Rat
708372Erc2ELKS/RAB6-interacting/CAST family member 21628127123673624Rat
620220Sh3bp5SH3-domain binding protein 51665834626678344Rat
621512Gdf10growth differentiation factor 101692371829250537Rat
1304855Capn7calpain 71665456306581908Rat
621036Tkttransketolase1657237645748702Rat
735166Chdhcholine dehydrogenase1651942695225541Rat
62072Slc18a3solute carrier family 18 member A31677136307716491Rat
628616Drgxdorsal root ganglia homeobox1678548497884404Rat
620633Itih3inter-alpha trypsin inhibitor, heavy chain 31661019226117154Rat
621040Rps24ribosomal protein S24168953894267Rat
621795Dnah1dynein, axonemal, heavy chain 11664555146517103Rat
3863Timm23translocase of inner mitochondrial membrane 231674103087436392Rat
631361Cacna2d3calcium voltage-gated channel auxiliary subunit alpha2delta 31640984394912498Rat
1305574Polr3aRNA polymerase III subunit A164917888178Rat
1307237Arhgap22Rho GTPase activating protein 221684738068631552Rat
1309388Appl1adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 11621185032166741Rat
1306079Sema3gsemaphorin 3G1664135896425221Rat
1305689Tmem254transmembrane protein 2541615039311507819Rat
1304995Nek4NIMA-related kinase 41661449006185376Rat
1307583Uqcc5ubiquinol-cytochrome c reductase complex assembly factor 51663166316320471Rat
1303129Selenokselenoprotein K1651520665160648Rat
735152StimateSTIM activating enhancer1660133926070829Rat
1304627Chatcholine O-acetyltransferase1676573627717093Rat
1306662Plac9placenta associated 91614594501474275Rat
1306099Itih1inter-alpha trypsin inhibitor, heavy chain 11661222466136363Rat
1305524Nt5dc25'-nucleotidase domain containing 21663224856330538Rat
1308638Phf7PHD finger protein 71664335356446314Rat
1309911Anxa11annexin A111614123731457814Rat
1311534Oxnad1oxidoreductase NAD-binding domain containing 11672934707322540Rat
1310423Vstm4V-set and transmembrane domain containing 41681203368200272Rat
1311509Ercc6ERCC excision repair 6, chromatin remodeling factor1677649837835587Rat
1311878Actr8actin related protein 81651641315186353Rat
1310916Ogdhloxoglutarate dehydrogenase L1675783437604385Rat
1310975Pde12phosphodiesterase 121619200621925638Rat
1306164Zcchc24zinc finger CCHC-type containing 241612745441326664Rat
1309921Tnnc1troponin C1, slow skeletal and cardiac type1664008016405634Rat
727804Mustn1musculoskeletal, embryonic nuclear protein 11660729086075161Rat
1306950Nischnischarin1663643706400675Rat
1305316Btdbiotinidase1668630686894345Rat
1307674Slmapsarcolemma associated protein1616672051785200Rat
1309835Zfp488zinc finger protein 4881692830399293681Rat
1311620Zmiz1zinc finger, MIZ-type containing 11610270831232616Rat
1306064Dennd6aDENN domain containing 6A1618370191885420Rat
1307719Anxa8annexin A81693971449412072Rat
1311392Il17rbinterleukin 17 receptor B1651804315194125Rat
1310672Arhgef3Rho guanine nucleotide exchange factor 31623015732581951Rat
1308922Gprin2G protein regulated inducer of neurite outgrowth 21694964529512672Rat
1309812Ptpn20protein tyrosine phosphatase, non-receptor type 201688855858949805Rat
1310057Eaf1ELL associated factor 11666983226713071Rat
1311738Lrrc18leucine rich repeat containing 181682535248277141Rat
1563858Hesx1HESX homeobox 11621918522193957Rat
1565652Frmpd2FERM and PDZ domain containing 21687576428877307Rat
1564325Rps24l3ribosomal protein S24 like 31665216706522244Rat
1563190Antxrl1ANTXR like 11693622119387762Rat
1564142Wdfy4WDFY family member 41682218538450494Rat
1561145Tmem273transmembrane protein 2731680495658081981Rat
1562654Rft1RFT1 homolog1658270635861120Rat
1560873Ccdc66coiled-coil domain containing 661626621252694031Rat
1309125Spcs1signal peptidase complex subunit 11661902086191776Rat
1311938Bap1BRCA1 associated deubiquitinase 11664467096455535Rat
1563014Ncoa4nuclear receptor coactivator 41673892227409564Rat
1311053Dux4double homeobox 41615584301570045Rat
1359565Mettl6methyltransferase 6, tRNA N3-cytidine1666838206699013Rat
1561298Dcp1adecapping mRNA 1A1656569605702151Rat
1565219Cphx1cytoplasmic polyadenylated homeobox 11615338831537248Rat
1359293Glt8d1glycosyltransferase 8 domain containing 11661922696207227Rat
1565017Dctpp1-ps2dCTP pyrophosphatase 1, pseudogene 21613929671393868Rat
1559931Ankrd28ankyrin repeat domain 281669184877050244Rat
1565549Pbrm1polybromo 11662135076312895Rat
1565067Shld2shieldin complex subunit 21695449409640323Rat
1590566Dph3diphthamide biosynthesis 31672882957293734Rat
1590788Rpl13a-ps11ribosomal protein L13A, pseudogene 111677399027741182Rat
1564899C16h10orf71similar to human chromosome 10 open reading frame 711679105977961900Rat
1586196Gdf2growth differentiation factor 21692554309261429Rat
1586999C16h10orf53similar to human chromosome 10 open reading frame 531676342077644876Rat
1565237Il17rdinterleukin 17 receptor D1622284382295122Rat
1588237Gmds-ps1GDP-mannose 4, 6-dehydratase, pseudogene 11665254346526454Rat
1595469Tasortranscription activation suppressor1626068072669902Rat
1592051Hnrnpa1-ps41heterogeneous nuclear ribonucleoprotein A1, pseudogene 411649574584959246Rat
1596812Asb14ankyrin repeat and SOCS box-containing 141620955672123259Rat
1596785Antxrl3ANTXR like 31693315069358181Rat
2318714Fam170bfamily with sequence similarity 170, member B1681019148104724Rat
2322081Galnt15polypeptide N-acetylgalactosaminyltransferase 151672272327267002Rat
2322864Rpl5-ps1ribosomal protein L5, pseudogene 11639304503932493Rat
2321691Lrtm1leucine-rich repeats and transmembrane domains 11642103434217843Rat
2322724Rps7-ps2ribosomal protein S7, pseudogene 21650748725090357Rat
2324745Stab1stabilin 11663304356360934Rat
6491687Dlg5ldiscs large MAGUK scaffold protein 5 like1616275741636979Rat
6502340Atpsckmt-ps1ATP synthase c subunit lysine N-methyltransferase, pseudogene 11627450872745803Rat
6500283Antxrl2ANTXR like 21693000309332329Rat
7489016Mir3075microRNA 30751611010631101175Rat
7515318LOC102553299uncharacterized LOC1025532991613332711337137Rat
7525846LOC102551656uncharacterized LOC10255165616211143225944Rat
7507794LOC102547142uncharacterized LOC1025471421679385357973540Rat
7532294Mrpl37-ps1mitochondrial ribosomal protein L37, pseudogene 11669449646948306Rat
7636032Envl-ps12MLV-related proviral Env polyprotein-like, pseudogene 121627187812727590Rat
7556606LOC102548056uncharacterized LOC1025480561622997082301948Rat
7708283LOC102555619uncharacterized LOC1025556191660187496021873Rat
7724613LOC102552347uncharacterized LOC10255234716754086761766Rat
7713473LOC102550037uncharacterized LOC1025500371670923627092787Rat
7668173Aco2-ps1aconitase 2, pseudogene 11628999132910508Rat
7743208LOC102550503uncharacterized LOC1025505031675525377560461Rat
7728594Ppp1r26-ps1protein phosphatase 1, regulatory subunit 26, pseudogene 11620209972025203Rat
9134190LOC103693956uncharacterized LOC1036939561650161615028732Rat
9185666LOC103693859uncharacterized LOC10369385916788500945373Rat
9317194LOC103693891uncharacterized LOC1036938911642265054242947Rat
9442066LOC103693876uncharacterized LOC1036938761636820023692605Rat
11466116LOC108348435uncharacterized LOC1083484351691389829150141Rat
11474719LOC10835309060S ribosomal protein L34 pseudogene1657003215707311Rat
11357136LOC108348454uncharacterized LOC1083484541652836235291153Rat
11448061LOC10835308860S ribosomal protein L27 pseudogene1612403581242676Rat
11422894LOC108348452uncharacterized LOC1083484521628837082938011Rat
11425421LOC108353065uncharacterized LOC10835306516831750841045Rat
41205510Trnaa-agc86transfer RNA alanine (anticodon AGC) 861663896186389690Rat
41173772LOC120097513uncharacterized LOC1200975131622259872228141Rat
41096323LOC120097507uncharacterized LOC120097507169975701025164Rat
41366414Rpl34-ps9ribosomal protein L34, pseudogene 91617373521765838Rat
41154593LOC120097603small nucleolar RNA SNORA171684682298468351Rat
41192096LOC120097665small nucleolar RNA SNORA711617519181752049Rat
41215662LOC120097394uncharacterized LOC1200973941670879187105752Rat
41345083LOC120097670small nucleolar RNA SNORA741674241367424330Rat
41369911LOC120097588small nucleolar RNA SNORA321658571735857312Rat
41289686LOC120097594small nucleolar RNA SNORA481649269784927114Rat
41070428LOC120097675small nucleolar RNA SNORD113/SNORD114 family1659980805998158Rat
41160895Snord19bsmall nucleolar RNA, C/D box 19B1662097526209831Rat
41184000LOC120097388uncharacterized LOC1200973881634740803491547Rat
41128131Zwint-ps1ZW10 interacting kinetochore protein, pseudogene 11695838319590123Rat
40948029LOC120097585small nucleolar RNA SNORA151696094459609571Rat
40956320Snord69small nucleolar RNA, C/D box 691662089226209001Rat
40981894Rpl7-ps11ribosomal protein L7, pseudogene 111643486614349495Rat
41000842LOC120097386uncharacterized LOC1200973861654102325417781Rat
41001347Snord19small nucleolar RNA, C/D box 191662108386210914Rat
40931794LOC120097604small nucleolar RNA SNORA171694187869418914Rat
40961170LOC120097431uncharacterized LOC12009743116586818592862Rat
40985629LOC120097592small nucleolar RNA SNORA481671642757164418Rat
41007829Fdps-ps1farnesyl diphosphate synthase, pseudogene 11658905645901971Rat
40937714Pargl1poly (ADP-ribose) glycohydrolase like 11673932057395586Rat
40993958LOC120097392uncharacterized LOC12009739216949194961139Rat
41048147LOC120097393uncharacterized LOC12009739316677492712886Rat
41311446LOC120097510spindlin-1-like16217000218039Rat
41244298LOC120097444uncharacterized LOC1200974441616203291626184Rat
41317526Trnav-aac12transfer RNA valine (anticodon AAC) 121673108207310892Rat
41058384Trnap-agg54transfer RNA proline (anticodon AGG) 541677193637719443Rat
41301818LOC120097595small nucleolar RNA SNORA481665420676542204Rat
41037850LOC120097424uncharacterized LOC1200974241694534069464250Rat
9302900LOC103693877PRAME family member 12 pseudogene1629521052958891Rat
9247050Lsm5l1LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated like 11613397691340198Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10660D16Mgh32241696389139639137Ratregion
33848D16Mit21691642276094227730Ratregion
34689D16Mgh71431657694075769550Ratregion
37320D16Rat311991680829068083107Ratregion
36892D16Rat1212416380245380356Ratregion
37058D16Rat111881687505488750747Ratregion
35831D16Rat221781634536603453842Ratregion
40498D16Rat1071331675223397522468Ratregion
40614D16Rat1111411696107239610876Ratregion
40634D16Rat832231686275678627782Ratregion
40724D16Rat872071633801503380363Ratregion
38784D16Rat512421633913053391527Ratregion
40060D16Rat861551648248364824985Ratregion
39272D16Rat382291683361478336281Ratregion
39272D16Rat382291683361478336378Ratregion
39456D16Rat8814816832236832380Ratregion
42020D16Arb44201657692785769666Ratregion
43064D16Rat1232391681004118100635Ratregion
42409D16Rat11224616110590110831Ratregion
60126D16Got517216197699197871Ratregion
60132D16Got9721693408079340879Ratregion
45307D16Got12271671962037196434Ratregion
45308D16Got217616197415197591Ratregion
45309D16Got32691634470633447332Ratregion
45310D16Got42971658660715866368Ratregion
45311D16Got61231615774861577609Ratregion
45312D16Rat1241451666044876604614Ratregion
45313D16Got911761667717416771917Ratregion
45315D16Got71831675860107586195Ratregion
45316D16Got81651679980777998243Ratregion
45317D16Got951321687787138778842Ratregion
60015D12Got381721673968087396980Ratregion
66387D16Mco34001639278273928280Ratregion
66394D16Mco92041696389219639125Ratregion
1357995D16Chm682451620282402028487Ratregion
1357996D16Chm651841628444362844620Ratregion
1357997D16Chm5221016525912526122Ratregion
1357999D16Chm1419316127141127338Ratregion
1358001D16Chm712491622443982244647Ratregion
1358002D16Chm732231620736352073858Ratregion
1358003D16Chm611901633097213309913Ratregion
1358004D16Chm492131634367143436931Ratregion
1358005D16Chm272071624474262447633Ratregion
1358006D16Chm161811625525122552695Ratregion
1358007D16Chm781581626284782628636Ratregion
1358009D16Chm2620116630050630247Ratregion
1358010D16Chm432001625267832526987Ratregion
1358011D16Chm3221716132366132583Ratregion
1358012D16Chm3418916125494125683Ratregion
1358015D16Chm672401622079092208149Ratregion
1358017D16Chm642501628030512803301Ratregion
1358022D16Chm3120516305507305714Ratregion
1358023D16Chm581991675389127539111Ratregion
1358024D16Chm3319816187648187846Ratregion
1358025D16Chm772411626038292604070Ratregion
1358026D16Chm742171617377951738012Ratregion
1358027D16Chm2520616538187538394Ratregion
1358029D16Chm5519516829968830657Ratregion
1358029D16Chm5519516830462830657Ratregion
1358032D16Chm692371619941331994341Ratregion
1358033D16Chm2419316127141127338Ratregion
1358034D16Chm632381628514712851709Ratregion
1358035D16Chm471981622368462237044Ratregion
1358036D16Chm23190168852488716Ratregion
1358037D16Chm622916244020244249Ratregion
1358040D16Chm3621616903314903530Ratregion
1358041D16Chm602611630804163080679Ratregion
1358042D16Chm662381629952252995463Ratregion
1358043D16Chm292721619303571930629Ratregion
1358044D16Chm22081626821802682388Ratregion
1358045D16Chm5420116503575503776Ratregion
1358046D16Chm762481625830082583254Ratregion
1358047D16Chm412651624696432469907Ratregion
1358048D16Chm3720116578688578891Ratregion
1358051D16Chm720816756765756975Ratregion
1358053D16Chm462001618664811866681Ratregion
1631551D16Got1202791630199703020251Ratregion
1628013D16Got1141391653727645372903Ratregion
1628998D16Got1232861640922614092540Ratregion
1640551D16Got1243001619873191987618Ratregion
1635324D16Got1091671660651466065313Ratregion
1637378D16Got1161081634576883457796Ratregion
1638037D16Got11312116756789756912Ratregion
7206792RH12432644916217250217699Ratregion
7206794RH12464116211614740111475632Ratregion
5035997PMC60063P17321694680179468749Ratregion
7206542UniSTS:5470109091677142887715197Ratregion
5039282RH1276161851612321561232341Ratregion
5039310RH1276332001695879079588085Ratregion
5037191RH989471521616685171668669Ratregion
5028641RH1257292471619129661913213Ratregion
5028733Cda0je041061636733593673465Ratregion
5031562AU0479163001678895947889894Ratregion
5026342RH1318381811677363387736519Ratregion
5026426RH1321661921661671226167314Ratregion
5031728AU04734714516901026901171Ratregion
5034363D3S31152681636733523673620Ratregion
5026478RH13236601674052587405472Ratregion
5029223RH1439831131678339697834082Ratregion
5034658BI2751772091663766876376896Ratregion
5034714BI2822842161663645766364792Ratregion
5026778RH1334931801665817096581889Ratregion
5026784RH1335152191682778458278064Ratregion
5032305AI666536801667127306712810Ratregion
5032415AI604979851669214236921508Ratregion
5034936AI2287201311667562046756335Ratregion
5034952AI1802021571612263471226504Ratregion
5032765RH1352171811631907383190919Ratregion
5027469AI8746261171664049886405105Ratregion
5030313BE10569815716179607179764Ratregion
5033053RH1374172131660093166009529Ratregion
502788120.MMHAP82FRG8.seq1761683021818302357Ratregion
5033337RH1384631521675545997554751Ratregion
5033495RH1390412101636730333673243Ratregion
5028303DXMit10718816954374954562Ratregion
5028364STS-L263181371686432148643351Ratregion
5033801RH1401741971621151752115372Ratregion
5031161BF41321919116536380536571Ratregion
5053585RH1427341151668941366894251Ratregion
5053881RH1429041421672668297266971Ratregion
5056175RH1442261151675452087545323Ratregion
5056533RH1444332591633365473336806Ratregion
5054165RH1430681141668941376894251Ratregion
5054209RH1430931721635984723598644Ratregion
5054741RH1433981051612304781230583Ratregion
5059460AW5309621511656575365657687Ratregion
5055653RH1439251171614125151412632Ratregion
5054857RH1434651451663691756369320Ratregion
5054893RH1434851981662093526209550Ratregion
5055019RH1435591091687213328721441Ratregion
5052281MDB03321651637160443716209Ratregion
5057255AI5551462201652427265242946Ratregion
5058882BE10255917816470488470666Ratregion
5059182BE1029841501692825369282686Ratregion
5053405RH1426291081673747997374907Ratregion
5057618BE0957122201692679859268205Ratregion
5050310RH1339821931664241916424384Ratregion
5050340RH1340001821666839346684116Ratregion
5051186RH1344892051615040781504283Ratregion
5054325RH143159209164926249471Ratregion
5054429RH1432191091672663387266447Ratregion
5051535AI849689841686389578639041Ratregion
5054677RH1433622241664464716446695Ratregion
5054717RH14338526616959417959683Ratregion
5054739RH1433972421654115255411767Ratregion
5054861RH1434671091614365421436651Ratregion
5050856RH1342981851695505519550736Ratregion
5044294RH1305201961661019416102137Ratregion
5044354RH1305541831660051036005286Ratregion
5044540RH1306621811672883157288496Ratregion
5041054RH1286361801675439967544176Ratregion
5041080RH1286511831660955036095686Ratregion
5041218RH1287301811692490159249196Ratregion
5045196RH1310392081622947412294949Ratregion
5041320RH1287892091669186086918817Ratregion
5048742RH1330792031660086976008900Ratregion
5048770RH1330952091642426904242899Ratregion
5048778RH1331001961616365671636763Ratregion
5045332RH1311171931672904767290669Ratregion
5045502RH1312152171626708622671079Ratregion
5047546RH1323891821657018565702038Ratregion
5045176RH1310281861664552216455407Ratregion
5045176RH1310281861664552216455407Ratregion
5045676RH1313152071678334887833695Ratregion
5047924RH1326072071664335806433787Ratregion
5047950RH1326221871663116626311849Ratregion
5049008RH1332331971664258836426080Ratregion
5046812RH1319681671682218948222061Ratregion
5046840RH1319852201611419861142206Ratregion
5046918RH1320292071610303241030531Ratregion
5048324RH1328371841660705956070779Ratregion
5039384RH1276752101663645356364745Ratregion
5042232RH1293161651619129781913143Ratregion
5039664RH1278351951626627352662930Ratregion
5042522RH1294851941669199846920178Ratregion
5042798RH1296521931619130521913245Ratregion
5040416RH1282712051612635831263788Ratregion
5039818RH1279242061619200951920301Ratregion
7192161Hesx15961621931302193726Ratregion
5042322RH1293672071686390618639268Ratregion
5040234RH1281662181626623122662530Ratregion
5042566RH1295121871621186692118856Ratregion
5041120RH1286741851614575651457750Ratregion
5072704RH1370041531669597736959926Ratregion
5075370RH13855513016683702683832Ratregion
5076262RH1390741331686389928639125Ratregion
5076640RH1392931351658458705846005Ratregion
5075488RH1386231401672668317266971Ratregion
5075906RH1388651731676574177657590Ratregion
5075948RH1388901781624904432490623Ratregion
5076724RH1393422241692764349276658Ratregion
5079622RH1411081801694116809411860Ratregion
5077552RH1398212091621215292121738Ratregion
5079912RH1412742121615697801569992Ratregion
5079942RH1412922041681998898200093Ratregion
5079012RH1406831961687097448709941Ratregion
5070572RH1345791851668878396888024Ratregion
5073022RH1371891801660749566075136Ratregion
5078828RH140575216165005550271Ratregion
5073128RH1372542201613934421393662Ratregion
5073174RH1372821831613399141340094Ratregion
5073420RH1374261941667329346733128Ratregion
5073526RH1374871901679116857911875Ratregion
5061676BE1058151561692775819277737Ratregion
5061822AW5337311911618964451896636Ratregion
5064998BE1088811691669358516936020Ratregion
5065080AI0442382491657695315769780Ratregion
5066700AU0482021301618245281824655Ratregion
5066870AU0481022131641202794120492Ratregion
5067300AU0478391331695873119587444Ratregion
5067358AU0478031781610497081049886Ratregion
5068842AU0468922701680847188084983Ratregion
5070149RH945001851652453125245497Ratregion
5061938BE112185150169490595055Ratregion
5062134BE1062411641688770728877236Ratregion
5063570BI2899701591664016766401835Ratregion
5063808AW5352641531651709785171129Ratregion
5065648BF40614824116521140521380Ratregion
5062722AW5340541581695350919535249Ratregion
5060308AW5312142001678280457828245Ratregion
5060352AW5315151661658891195889285Ratregion
5062452BF3979061641669208516921015Ratregion
5064130BE1206411521675559457556097Ratregion
5060804AI1452022011636732913673492Ratregion
5060818BF3891952441651567415156985Ratregion
5064440BF3992231921692502179250409Ratregion
5062852BE1130391881661929286193116Ratregion
5062866BE1131071601637179473718107Ratregion
5062972BE1135261681652644305264598Ratregion
5064622BF3994591561637156183715774Ratregion
5066140BF4135831041626514102651514Ratregion
5061212BE1112152041651861285186332Ratregion
5061526BE1119621511619139191914070Ratregion
5061536BF3966532141636957503695964Ratregion
5061542AA8754122101616680601668270Ratregion
5084304AA8501481461666814836681629Ratregion
5086849BF4018301461680948498094995Ratregion
5086175AA8753182041672910257291229Ratregion
5087120BM3892401861682219698222155Ratregion
5087450PMC18246P17901652951945295984Ratregion
5082325BE1191951611634659423466103Ratregion
5082363BE1192581561618642241864380Ratregion
5088145Wnt5a1891637135683713757Ratregion
5089497AU0491902391611259981126237Ratregion
5088649AU0486951281666764536676581Ratregion
5088881AU0488251901636797883679978Ratregion
5090441AU0497522681682633578263625Ratregion
5081681BE1179941581657475695747727Ratregion
5084312AA8501651201660061166006236Ratregion
5088147Wnt5a2211637135683713789Ratregion
5088821AU0487911401671282907128430Ratregion
5088967AU0488752071644741404474347Ratregion
5086028AA8591561951612321471232342Ratregion
5084846AI2359011121618845651884677Ratregion
5084934AA8002851011616579821658083Ratregion
5083203BI2753041661624415252441691Ratregion
5083203BI2753041661624415252441691Ratregion
5085597AW5281802261635306603530886Ratregion
5085653BI2767121531656990495699202Ratregion
5086693AA8918351891662067546206943Ratregion
5086713BE1072941791665834626583641Ratregion
5081921BE1187561591661851286185287Ratregion
5084010AI0109831941674159287416122Ratregion
5503346Hesx101621922252193143Ratregion
5506763G4522318316454227454410Ratregion
5507055UniSTS:2242761901657694215769611Ratregion
5500141UniSTS:2371612951686397288640023Ratregion
5500145UniSTS:2371502051669214246921629Ratregion
5501522D2S3397621642552794256041Ratregion
5506577Wnt5a2341637030223704443Ratregion
5506595SH3BP5961665881636588259Ratregion
5501804MARC_13424-13425:1002294866:11021686476908648300Ratregion
5501892MARC_17013-17014:1023291181:101617182811718704Ratregion
5502772TKT1261657449175745156Ratregion
Position Markers

Flank 1: (D16Mit4)
Rat AssemblyChrPosition (strand)Source
Rnor_5.01629,485,011 - 29,485,167NCBI
RGSC_v3.41630,560,825 - 30,560,980RGD
RGSC_v3.11630,560,823 - 30,560,978RGD
RH 3.4 Map16297.61UniSTS
RH 3.4 Map16297.61RGD
SHRSP x BN Map1611.28RGD
SHRSP x BN Map1611.28UniSTS
Cytogenetic Map16 RGD
Flank 2: (D16Mgh3)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2169,638,913 - 9,639,137 (+)MAPPER
Rnor_6.01610,660,513 - 10,660,736NCBI
Rnor_5.0168,978,954 - 8,979,177UniSTS
RGSC_v3.4169,964,209 - 9,964,433RGD
RGSC_v3.4169,964,210 - 9,964,433UniSTS
RGSC_v3.1169,964,207 - 9,964,431RGD
Celera165,577,625 - 5,577,848UniSTS
Cytogenetic Map16p16UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631561Hcuc2Hepatic copper content QTL 22.8liver copper amount (VT:0003065)liver total copper weight (CMO:0001507)16139533949Rat
1582235Insul8Insulin level QTL 83.30.0063blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)16126727669Rat
1549842Bp248Blood pressure QTL 2480.01arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)163802452995463Rat
2307172Activ4Activity QTL 43.710.00023locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)16133418960Rat
1354584Despr6Despair related QTL 63.10.0067locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16139533930Rat
1357403Slep4Serum leptin concentration QTL 43.91blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1619639137Rat
2302380Slep6Serum leptin concentration QTL 63.36blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)16132139025Rat
737819Hcas4Hepatocarcinoma susceptibility QTL 44.43liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)16422760946975965Rat
12903952Cm117Cardiac mass QTL 1170.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)168323802995225Rat
9590151Scort8Serum corticosterone level QTL 88.450.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)16130836262Rat
1354625Despr7Despair related QTL 73.160.016locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16144977551Rat
12903954Bw186Body weight QTL 1860.011body mass (VT:0001259)body weight (CMO:0000012)168323802995225Rat
12903955Kidm69Kidney mass QTL 690.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)168323804227609Rat
61338Bp23Blood pressure QTL 234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16422760949227609Rat
61405Niddm6Non-insulin dependent diabetes mellitus QTL 63.660.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)16422760948972724Rat
631830Alc7Alcohol consumption QTL 72.9consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16126727669Rat
7411664Foco30Food consumption QTL 30110.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)16144588133Rat
1600378Arunc4Aerobic running capacity QTL 40.03exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)1638024580345693Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)16422760943025077Rat
1600369Hcas8Hepatocarcinoma susceptibility QTL 8liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)16122477621Rat
737826Alc11Alcohol consumption QTL 113.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16422760960252231Rat
12903278Am16Aortic mass QTL 160.019aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)168323802995225Rat
737825Alc13Alcohol consumption QTL 134.5consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16422760916039848Rat
12903279Cm115Cardiac mass QTL 1150.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)168323802995225Rat
631524Bp75Blood pressure QTL 750.05arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)161110831Rat
2325838Bp347Blood pressure QTL 3470.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1613080679Rat
2303566Bw90Body weight QTL 902body mass (VT:0001259)body weight (CMO:0000012)16139533930Rat
2312663Slep9Serum leptin concentration QTL 90.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1683223659492508Rat
12903281Cm116Cardiac mass QTL 1160.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)168323802995225Rat
2306902Bp339Blood pressure QTL 3390.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16338015043025077Rat
1300133Rf24Renal function QTL 243.64blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)16338015021361552Rat
2312660Bw95Body weight QTL 950.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)1683223659492508Rat
2312666Insul16Insulin level QTL 160.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1683223659492508Rat
634355Rends4Renal damage susceptibility QTL 40.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)16126727669Rat
61372Bp40Blood pressure QTL 402.2blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)16422773017696785Rat
2293343Glom16Glomerulus QTL 167.4kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1683223646053497Rat
2301406Kidm39Kidney mass QTL 390.002kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)16285170915884239Rat
6903319Bw114Body weight QTL 1142.70.0037body mass (VT:0001259)body weight (CMO:0000012)16143534949Rat
2312669Stl23Serum triglyceride level QTL 230.01blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1683223659492508Rat
2301404Bp321Blood pressure QTL 3210.05arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)168323802995225Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene Slep4

RGD Curation Notes
Note Type Note Reference