Alc13 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Alc13 (Alcohol consumption QTL 13) Rattus norvegicus

Symbol: Alc13
Name: Alcohol consumption QTL 13
RGD ID: 737825
Previously known as: Alcohol preference; Eoh; Alcohol preference QTL 13
Trait: consumption behavior trait   (VT:0002069)    
Measurement Type: ethanol drink intake rate   (CMO:0001407)    
LOD Score: 4.5
P Value: Not Available
Variance: Not Available
Inheritance Type: additive
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2164,227,609 - 16,039,848RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0165,013,802 - 18,360,147RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0164,954,192 - 18,239,063RGDRnor5.0
RGSC_v3.4164,304,396 - 16,536,977RGDRGSC3.4
RGSC_v3.1164,304,394 - 16,536,975RGD
Cross Type: Intercross
Strains Crossed: Iusm:HAD2 Iusm:LAD2 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method
scale  (IDA)

Vertebrate Trait

Rat Strain
Iusm:HAD2  (IEA)
Iusm:LAD2  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Analyses of quantitative trait loci contributing to alcohol preference in HAD1/LAD1 and HAD2/LAD2 rats. Carr LG, etal., Alcohol Clin Exp Res 2003 Nov;27(11):1710-7.
Related QTLs

Related QTL Description Reference
Alc12 interacts with RGD:731212
Alc10 interacts with RGD:731212
Alc9 interacts with RGD:731212
Alc11 maps to same region RGD:731212
Alc4 interacts with RGD:731212
Alc6 interacts with RGD:731212
Alc5 interacts with RGD:731212
Alc8 interacts with RGD:731212
Alc7 maps to same region RGD:731212


Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
631361Cacna2d3calcium voltage-gated channel auxiliary subunit alpha2delta 31640984394912498Rat
9317194LOC103693891uncharacterized LOC1036938911642265054242947Rat
40981894Rpl7-ps11ribosomal protein L7, pseudogene 111643486614349495Rat
41289686LOC120097594small nucleolar RNA SNORA481649269784927114Rat
1592051Hnrnpa1-ps41heterogeneous nuclear ribonucleoprotein A1, pseudogene 411649574584959246Rat
9134190LOC103693956uncharacterized LOC1036939561650161615028732Rat
2322724Rps7-ps2ribosomal protein S7, pseudogene 21650748725090357Rat
1303129Selenokselenoprotein K1651520665160648Rat
1311878Actr8actin related protein 81651641315186353Rat
1311392Il17rbinterleukin 17 receptor B1651804315194125Rat
735166Chdhcholine dehydrogenase1651942695225541Rat
70973Cacna1dcalcium voltage-gated channel subunit alpha1 D1652271575521163Rat
11357136LOC108348454uncharacterized LOC1083484541652836235291153Rat
41000842LOC120097386uncharacterized LOC1200973861654102325417781Rat
1561298Dcp1adecapping mRNA 1A1656569605702151Rat
11474719LOC10835309060S ribosomal protein L34 pseudogene1657003215707311Rat
621036Tkttransketolase1657237645748702Rat
67383Prkcdprotein kinase C, delta1657692175799380Rat
1562654Rft1RFT1 homolog1658270635861120Rat
41369911LOC120097588small nucleolar RNA SNORA321658571735857312Rat
61999Sfmbt1Scm-like with four mbt domains 11658890466009860Rat
41007829Fdps-ps1farnesyl diphosphate synthase, pseudogene 11658905645901971Rat
41070428LOC120097675small nucleolar RNA SNORD113/SNORD114 family1659980805998158Rat
735152StimateSTIM activating enhancer1660133926070829Rat
7708283LOC102555619uncharacterized LOC1025556191660187496021873Rat
727804Mustn1musculoskeletal, embryonic nuclear protein 11660729086075161Rat
70881Itih4inter-alpha-trypsin inhibitor heavy chain 41660805396095710Rat
620633Itih3inter-alpha trypsin inhibitor, heavy chain 31661019226117154Rat
1306099Itih1inter-alpha trypsin inhibitor, heavy chain 11661222466136363Rat
1304995Nek4NIMA-related kinase 41661449006185376Rat
1309125Spcs1signal peptidase complex subunit 11661902086191776Rat
1359293Glt8d1glycosyltransferase 8 domain containing 11661922696207227Rat
631354Gnl3G protein nucleolar 31662074026213491Rat
40956320Snord69small nucleolar RNA, C/D box 691662089226209001Rat
41160895Snord19bsmall nucleolar RNA, C/D box 19B1662097526209831Rat
41001347Snord19small nucleolar RNA, C/D box 191662108386210914Rat
1565549Pbrm1polybromo 11662135076312895Rat
1307583Uqcc5ubiquinol-cytochrome c reductase complex assembly factor 51663166316320471Rat
1305524Nt5dc25'-nucleotidase domain containing 21663224856330538Rat
2324745Stab1stabilin 11663304356360934Rat
1306950Nischnischarin1663643706400675Rat
41205510Trnaa-agc86transfer RNA alanine (anticodon AGC) 861663896186389690Rat
1309921Tnnc1troponin C1, slow skeletal and cardiac type1664008016405634Rat
1306079Sema3gsemaphorin 3G1664135896425221Rat
1308638Phf7PHD finger protein 71664335356446314Rat
1311938Bap1BRCA1 associated deubiquitinase 11664467096455535Rat
621795Dnah1dynein, axonemal, heavy chain 11664555146517103Rat
1564325Rps24l3ribosomal protein S24 like 31665216706522244Rat
1588237Gmds-ps1GDP-mannose 4, 6-dehydratase, pseudogene 11665254346526454Rat
41301818LOC120097595small nucleolar RNA SNORA481665420676542204Rat
1304855Capn7calpain 71665456306581908Rat
620220Sh3bp5SH3-domain binding protein 51665834626678344Rat
1359565Mettl6methyltransferase 6, tRNA N3-cytidine1666838206699013Rat
1310057Eaf1ELL associated factor 11666983226713071Rat
2377Colqcollagen like tail subunit of asymmetric acetylcholinesterase1667318506824973Rat
619849Hacl12-hydroxyacyl-CoA lyase 11668268816863027Rat
1305316Btdbiotinidase1668630686894345Rat
1559931Ankrd28ankyrin repeat domain 281669184877050244Rat
7532294Mrpl37-ps1mitochondrial ribosomal protein L37, pseudogene 11669449646948306Rat
41215662LOC120097394uncharacterized LOC1200973941670879187105752Rat
7713473LOC102550037uncharacterized LOC1025500371670923627092787Rat
40985629LOC120097592small nucleolar RNA SNORA481671642757164418Rat
2322081Galnt15polypeptide N-acetylgalactosaminyltransferase 151672272327267002Rat
1590566Dph3diphthamide biosynthesis 31672882957293734Rat
1311534Oxnad1oxidoreductase NAD-binding domain containing 11672934707322540Rat
41317526Trnav-aac12transfer RNA valine (anticodon AAC) 121673108207310892Rat
3113Msmbmicroseminoprotein, beta1673665367387124Rat
1563014Ncoa4nuclear receptor coactivator 41673892227409564Rat
40937714Pargl1poly (ADP-ribose) glycohydrolase like 11673932057395586Rat
3863Timm23translocase of inner mitochondrial membrane 231674103087436392Rat
41345083LOC120097670small nucleolar RNA SNORA741674241367424330Rat
620387Pargpoly (ADP-ribose) glycohydrolase1674364297544276Rat
7743208LOC102550503uncharacterized LOC1025505031675525377560461Rat
1310916Ogdhloxoglutarate dehydrogenase L1675783437604385Rat
1586999C16h10orf53similar to human chromosome 10 open reading frame 531676342077644876Rat
1304627Chatcholine O-acetyltransferase1676573627717093Rat
62072Slc18a3solute carrier family 18 member A31677136307716491Rat
41058384Trnap-agg54transfer RNA proline (anticodon AGG) 541677193637719443Rat
1590788Rpl13a-ps11ribosomal protein L13A, pseudogene 111677399027741182Rat
1311509Ercc6ERCC excision repair 6, chromatin remodeling factor1677649837835587Rat
628616Drgxdorsal root ganglia homeobox1678548497884404Rat
1564899C16h10orf71similar to human chromosome 10 open reading frame 711679105977961900Rat
7507794LOC102547142uncharacterized LOC1025471421679385357973540Rat
1561145Tmem273transmembrane protein 2731680495658081981Rat
2318714Fam170bfamily with sequence similarity 170, member B1681019148104724Rat
1310423Vstm4V-set and transmembrane domain containing 41681203368200272Rat
1564142Wdfy4WDFY family member 41682218538450494Rat
1311738Lrrc18leucine rich repeat containing 181682535248277141Rat
41154593LOC120097603small nucleolar RNA SNORA171684682298468351Rat
1307237Arhgap22Rho GTPase activating protein 221684738068631552Rat
621506Mapk8mitogen-activated protein kinase 81686388978721960Rat
1565652Frmpd2FERM and PDZ domain containing 21687576428877307Rat
1309812Ptpn20protein tyrosine phosphatase, non-receptor type 201688855858949805Rat
11466116LOC108348435uncharacterized LOC1083484351691389829150141Rat
621512Gdf10growth differentiation factor 101692371829250537Rat
1586196Gdf2growth differentiation factor 21692554309261429Rat
3545Rbp3retinol binding protein 31692675389276006Rat
1309835Zfp488zinc finger protein 4881692830399293681Rat
6500283Antxrl2ANTXR like 21693000309332329Rat
1596785Antxrl3ANTXR like 31693315069358181Rat
1563190Antxrl1ANTXR like 11693622119387762Rat
1307719Anxa8annexin A81693971449412072Rat
40931794LOC120097604small nucleolar RNA SNORA171694187869418914Rat
41037850LOC120097424uncharacterized LOC1200974241694534069464250Rat
61864Npy4rneuropeptide Y receptor Y41694678019469057Rat
1308922Gprin2G protein regulated inducer of neurite outgrowth 21694964529512672Rat
727964Syt15synaptotagmin 151695324789543288Rat
1565067Shld2shieldin complex subunit 21695449409640323Rat
41128131Zwint-ps1ZW10 interacting kinetochore protein, pseudogene 11695838319590123Rat
40948029LOC120097585small nucleolar RNA SNORA151696094459609571Rat
2708Glud1glutamate dehydrogenase 11696403129673961Rat
1584388Fam25afamily with sequence similarity 25, member A1696806689684474Rat
70996Sncgsynuclein, gamma1697005139705751Rat
1311461Mmrn2multimerin 21697059259727405Rat
70989Bmpr1abone morphogenetic protein receptor type 1A1697363909829825Rat
41232538Tenol-ps1T-enol, pseudogene 11697456519747040Rat
11399720LOC108353075uncharacterized LOC1083530751697544319756843Rat
1564875Ldb3LIM domain binding 31698557689920108Rat
621701Opn4opsin 41699204089929580Rat
2321348Ndufaf4-ps2NADH:ubiquinone oxidoreductase complex assembly factor 4, pseudogene 21699348329937215Rat
1590924WaplWAPL cohesin release factor161000552010075270Rat
1583250Isca1-ps1iron-sulfur cluster assembly 1, pseudogene 1161007967010081279Rat
1590787Cfl1-ps7cofilin 1, pseudogene 7161011179510114251Rat
41349639Trnaa-agc63transfer RNA alanine (anticodon AGC) 63161011318910113261Rat
68366Grid1glutamate ionotropic receptor delta type subunit 1161013856410885803Rat
1598050Rpl38-ps3ribosomal protein L38, pseudogene 3161018268810183002Rat
2325402Mir346microRNA 346161021811810218215Rat
11448581LOC108353077ral guanine nucleotide dissociation stimulator-like161112151311128582Rat
2322173Ralgdsl9ral guanine nucleotide dissociation stimulator like 9161115642811160928Rat
1565329Ralgdsl11ral guanine nucleotide dissociation stimulator like 11161118070011189203Rat
7654081Ralgdsl6ral guanine nucleotide dissociation stimulator like 6161120335511209558Rat
1559804Cdrt15l2CMT1A duplicated region transcript 15 like 2161122601211231967Rat
41040544LOC120097482ral guanine nucleotide dissociation stimulator-like161126906111277700Rat
7674954LOC102551632ral guanine nucleotide dissociation stimulator-like161129398311321792Rat
1559508Rgl4ral guanine nucleotide dissociation stimulator like 4161133328311335800Rat
1560429Ralgds-ps3ral guanine nucleotide dissociation stimulator, pseudogene 3161134410911353404Rat
41182876LOC120097481ral guanine nucleotide dissociation stimulator-like161136139411366549Rat
11502729LOC108353078ral guanine nucleotide dissociation stimulator-like161137143711377948Rat
11389891Ralgds-ps6ral guanine nucleotide dissociation stimulator, pseudogene 6161138173211387931Rat
1562508Ralgds-ps4ral guanine nucleotide dissociation stimulator, pseudogene 4161139887411402678Rat
7591200LOC102552466uncharacterized LOC102552466161140903611427387Rat
6491640LOC100911649ral guanine nucleotide dissociation stimulator-like161143545911438066Rat
40960479Ralgds-ps1ral guanine nucleotide dissociation stimulator, pseudogene 1161144434811489474Rat
1563356Ralgdsl4ral guanine nucleotide dissociation stimulator like 4161164465511649507Rat
41197998Nono-ps4non-POU domain containing, octamer-binding, pseudogene 4161165663611664218Rat
15626414930474N05Rikl2RIKEN cDNA 4930474N05 gene like 2161166431011672032Rat
15925844930596D02Rikl1RIKEN cDNA 4930596D02 gene like 1161169017311697034Rat
1566067RGD1566067similar to hypothetical protein 4930474N05161170214611718153Rat
40952345LOC120097615small nucleolar RNA SNORA17161233856812338687Rat
6488495Set-ps3Set nuclear proto-oncogene, pseudogene 3161234554712346636Rat
1590250Tpt1l2tumor protein, translationally-controlled 1 like 2161247666012477351Rat
41224408LOC120097651U6 spliceosomal RNA161251047812510584Rat
1304626Ccser2coiled-coil serine-rich protein 2161261310312725764Rat
41123311LOC120097586small nucleolar RNA SNORA15161265044412650570Rat
1309174Rgrretinal G protein coupled receptor161280159412816402Rat
628607Lrit1leucine-rich repeat, Ig-like and transmembrane domains 1161282207612830003Rat
1564668Lrit2leucine-rich repeat, Ig-like and transmembrane domains 2161283499612840028Rat
620420Cdhr1cadherin-related family member 1161284343612863321Rat
1566160Gpr15lgG protein-coupled receptor 15 ligand161286827012875876Rat
11493527LOC108353094cytochrome c, somatic pseudogene161287857612878932Rat
1359301Ghitmgrowth hormone inducible transmembrane protein161288555112897887Rat
2324846C16h14orf119similar to human chromosome 14 open reading frame 119161293634512936885Rat
1589073Kics2-ps2KICSTOR subunit 2, pseudogene 2161297457112975485Rat
41351762LOC120097618small nucleolar RNA SNORA17161298391312984032Rat
41380747LOC120097470uncharacterized LOC120097470161300744613016645Rat
1565661Pphln1-ps3periphilin 1, pseudogene 3161311081313111863Rat
41067760Trnav-cac8transfer RNA valine (anticodon CAC) 8161313437313134453Rat
41170814LOC120097616small nucleolar RNA SNORA17161315877913158909Rat
2324350Eci2-ps1enoyl-CoA delta isomerase 2, pseudogene 1161333893013340889Rat
41143229LOC120093076elongin-A3 member D-like161363056913632334Rat
41234305LOC120097457elongin-A3 member D-like161363570013637465Rat
41160719LOC120097456elongin-A3 member D-like161364083613642601Rat
41238505LOC120097453elongin-A3 member D-like161364596713647732Rat
41138077LOC120097423elongin-A3 member D-like161365110613652871Rat
41183091LOC120097440elongin-A3 member D-like161365623113657995Rat
41088228Rpl6-ps16ribosomal protein L6, pseudogene 16161370095213711446Rat
7613786LOC102555898uncharacterized LOC102555898161379868113850813Rat
6501477Eloa2l-ps1elongin A2 like, pseudogene 1161405779414059580Rat
41394525LOC120097531elongin-A3-like161406298014068724Rat
1586821Eloa2lelongin A2 like161407451414076458Rat
41012872Eloa-ps3elongin A, pseudogene 3161407979814081667Rat
40988172Eloa-ps2elongin A, pseudogene 2161408505414086905Rat
41117791Eloa-ps1elongin A, pseudogene 1161409024114092062Rat
41048724EloaA2l1elongin-A2-like 1161409549214097251Rat
1559678Nrg3neuregulin 3161422927015352505Rat
11496471LOC108348383uncharacterized LOC108348383161535295215364193Rat
1564958Gapdhl10glyceraldehyde-3-phosphate dehydrogenase like 10161537029015371300Rat
1592049Rpsa-ps13ribosomal protein SA, pseudogene 13161556115315567521Rat
7673432LOC102546465uncharacterized LOC102546465161564964215659610Rat
7720136LOC102556133uncharacterized LOC102556133161565976115746831Rat
41008933LOC120097391uncharacterized LOC120097391161580844315890086Rat
2323172Hspa8-ps3heat shock protein family A (Hsp70) member 8, pseudogene 3161601072116018027Rat
2323222Entr1l2endosome associated trafficking regulator 1 like 2161601813716020197Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10660D16Mgh32241696389139639137Ratregion
33848D16Mit21691642276094227730Ratregion
34689D16Mgh71431657694075769550Ratregion
37320D16Rat311991680829068083107Ratregion
37058D16Rat111881687505488750747Ratregion
37854D16Rat30177161603965916039848Ratregion
34833D13Rat19169161144291211443111Ratregion
38370D16Rat44205161572624415726433Ratregion
40382D16Rat81153161540773015407877Ratregion
40498D16Rat1071331675223397522468Ratregion
40614D16Rat1111411696107239610876Ratregion
40634D16Rat832231686275678627782Ratregion
40060D16Rat861551648248364824985Ratregion
38834D16Rat35281161588423915884486Ratregion
38858D16Rat54245161089057910890802Ratregion
39200D16Rat32125161091889410919027Ratregion
39272D16Rat382291683361478336281Ratregion
39272D16Rat382291683361478336378Ratregion
42020D16Arb44201657692785769666Ratregion
41412D16Rat85156161208384212083987Ratregion
43064D16Rat1232391681004118100635Ratregion
43065D16Rat122214161292757112927779Ratregion
43099D17Rat171116161271130512711501Ratregion
60123D16Got14201161086441610864617Ratregion
60132D16Got9721693408079340879Ratregion
45307D16Got12271671962037196434Ratregion
45310D16Got42971658660715866368Ratregion
45312D16Rat1241451666044876604614Ratregion
45313D16Got911761667717416771917Ratregion
45315D16Got71831675860107586195Ratregion
45316D16Got81651679980777998243Ratregion
45317D16Got951321687787138778842Ratregion
45318D16Got10393161279037012790760Ratregion
45320D16Got13186161149085511491041Ratregion
45321D16Got16223161376057713760799Ratregion
45322D16Got15131161480922614809357Ratregion
45323D16Got1296161241872812418824Ratregion
60015D12Got381721673968087396980Ratregion
66394D16Mco92041696389219639125Ratregion
67250D16Arb112021696391899639391Ratregion
1358023D16Chm581991675389127539111Ratregion
1628013D16Got1141391653727645372903Ratregion
1635324D16Got1091671660651466065313Ratregion
1638438D16Got101238161508539415085632Ratregion
5035997PMC60063P17321694680179468749Ratregion
7206542UniSTS:5470109091677142887715197Ratregion
5036324Grid1132161088533410885466Ratregion
5039310RH1276332001695879079588085Ratregion
5039082RH1275022001696735479673747Ratregion
5036893AU049538108161170274711703399Ratregion
5031562AU0479163001678895947889894Ratregion
5026342RH1318381811677363387736519Ratregion
5026426RH1321661921661671226167314Ratregion
5026478RH13236601674052587405472Ratregion
5029223RH1439831131678339697834082Ratregion
5031892AU046803240161003441510034657Ratregion
5034658BI2751772091663766876376896Ratregion
5034714BI2822842161663645766364792Ratregion
5026778RH1334931801665817096581889Ratregion
5026784RH1335152191682778458278064Ratregion
5032305AI666536801667127306712810Ratregion
5032415AI604979851669214236921508Ratregion
5029893BI2850921281696807249680852Ratregion
5034936AI2287201311667562046756335Ratregion
5027469AI8746261171664049886405105Ratregion
5033053RH1374172131660093166009529Ratregion
502788120.MMHAP82FRG8.seq1761683021818302357Ratregion
5033215RH138007225161088810910888334Ratregion
5033337RH1384631521675545997554751Ratregion
5028364STS-L263181371686432148643351Ratregion
5052151RH948691831696736519673834Ratregion
5053585RH1427341151668941366894251Ratregion
5053881RH1429041421672668297266971Ratregion
5056175RH1442261151675452087545323Ratregion
5054165RH1430681141668941376894251Ratregion
5054227RH143103215161042274810422963Ratregion
5052149RH948681711696736489673819Ratregion
5059460AW5309621511656575365657687Ratregion
5054857RH1434651451663691756369320Ratregion
5054893RH1434851981662093526209550Ratregion
5054911RH143495120161005258310052703Ratregion
5055019RH1435591091687213328721441Ratregion
5058646BE1022381501699860859986235Ratregion
5056419RH144367139161422939514229534Ratregion
5057255AI5551462201652427265242946Ratregion
5052807RH1422851971697348269735023Ratregion
5050116RH1338712181698568089857026Ratregion
5059182BE1029841501692825369282686Ratregion
5053311RH142575137161263820412638341Ratregion
5053405RH1426291081673747997374907Ratregion
5059270BF387911195161309414613094341Ratregion
5057618BE0957122201692679859268205Ratregion
5053665RH142780296161288495012885246Ratregion
5050310RH1339821931664241916424384Ratregion
5050340RH1340001821666839346684116Ratregion
5054429RH1432191091672663387266447Ratregion
5051535AI849689841686389578639041Ratregion
5054677RH1433622241664464716446695Ratregion
5054739RH1433972421654115255411767Ratregion
5050856RH1342981851695505519550736Ratregion
5044294RH1305201961661019416102137Ratregion
5044354RH1305541831660051036005286Ratregion
5044540RH1306621811672883157288496Ratregion
5041054RH1286361801675439967544176Ratregion
5041080RH1286511831660955036095686Ratregion
5041182RH1287091901697272099727399Ratregion
5041218RH1287301811692490159249196Ratregion
5041320RH1287892091669186086918817Ratregion
5048742RH1330792031660086976008900Ratregion
5048770RH1330952091642426904242899Ratregion
5045332RH1311171931672904767290669Ratregion
5047546RH1323891821657018565702038Ratregion
5045176RH1310281861664552216455407Ratregion
5045176RH1310281861664552216455407Ratregion
5045676RH1313152071678334887833695Ratregion
5049014RH1332361971698926139892810Ratregion
5049144RH133311193161288580812886001Ratregion
5047924RH1326072071664335806433787Ratregion
5047950RH1326221871663116626311849Ratregion
5049008RH1332331971664258836426080Ratregion
5046812RH1319681671682218948222061Ratregion
5048324RH1328371841660705956070779Ratregion
5039364RH1276641801696730379673217Ratregion
5039384RH1276752101663645356364745Ratregion
5042522RH1294851941669199846920178Ratregion
5042322RH1293672071686390618639268Ratregion
5043490RH130055218161007495110075169Ratregion
5072704RH1370041531669597736959926Ratregion
5072172RH1366941561699205059920661Ratregion
5076262RH1390741331686389928639125Ratregion
5076640RH1392931351658458705846005Ratregion
5075488RH1386231401672668317266971Ratregion
5075906RH1388651731676574177657590Ratregion
5075928RH138878184161460504714605231Ratregion
5076724RH1393422241692764349276658Ratregion
5079622RH1411081801694116809411860Ratregion
5079942RH1412922041681998898200093Ratregion
5078976RH1406621861697351719735357Ratregion
5079012RH1406831961687097448709941Ratregion
5070572RH1345791851668878396888024Ratregion
5070738RH1346762051697342229734427Ratregion
5073022RH1371891801660749566075136Ratregion
5073190RH137292183161000502510005208Ratregion
5073582RH1375191681697266819726849Ratregion
5070844RH134738208161282951112829719Ratregion
5073420RH1374261941667329346733128Ratregion
5073526RH1374871901679116857911875Ratregion
5072430RH1368442121697347119734923Ratregion
5061676BE1058151561692775819277737Ratregion
5061754AI715562101161009374010093841Ratregion
5064998BE1088811691669358516936020Ratregion
5065080AI0442382491657695315769780Ratregion
5067300AU0478391331695873119587444Ratregion
5067562AU047670155161160232811602483Ratregion
5067820AU047516240161303668613036921Ratregion
5068842AU0468922701680847188084983Ratregion
5070149RH945001851652453125245497Ratregion
5062134BE1062411641688770728877236Ratregion
5063570BI2899701591664016766401835Ratregion
5063808AW5352641531651709785171129Ratregion
5065646BE1095721521698121709812322Ratregion
5062680AI716200143161286837612868519Ratregion
5062722AW5340541581695350919535249Ratregion
5060308AW5312142001678280457828245Ratregion
5060352AW5315151661658891195889285Ratregion
5065236BE121252210161538402115384231Ratregion
5065430BF412035215161449911514499330Ratregion
5062452BF3979061641669208516921015Ratregion
5064130BE1206411521675559457556097Ratregion
5060818BF3891952441651567415156985Ratregion
5064440BF3992231921692502179250409Ratregion
5066108BE116851156161004080810040964Ratregion
5062852BE1130391881661929286193116Ratregion
5062972BE1135261681652644305264598Ratregion
5061212BE1112152041651861285186332Ratregion
5066368AU0483981551698097629809917Ratregion
5066424AU048365185161046240910462594Ratregion
5061578BF396728148161261532312615471Ratregion
5084304AA8501481461666814836681629Ratregion
5086849BF4018301461680948498094995Ratregion
5086175AA8753182041672910257291229Ratregion
5087120BM3892401861682219698222155Ratregion
5087450PMC18246P17901652951945295984Ratregion
5087895UniSTS:143254153161088534210885495Ratregion
5083529BE1004541701697361229736292Ratregion
5088649AU0486951281666764536676581Ratregion
5090441AU0497522681682633578263625Ratregion
5081681BE1179941581657475695747727Ratregion
5084312AA8501651201660061166006236Ratregion
5085477BM391146193161150127811501471Ratregion
5085242AA799642126161288822012888346Ratregion
5090489AU049780134161055344910553583Ratregion
5088821AU0487911401671282907128430Ratregion
5088967AU0488752071644741404474347Ratregion
5084702AI17913396161002390810024004Ratregion
5082901BF390373157161016925810169415Ratregion
5085653BI2767121531656990495699202Ratregion
5086693AA8918351891662067546206943Ratregion
5086713BE1072941791665834626583641Ratregion
5081921BE1187561591661851286185287Ratregion
5084010AI0109831941674159287416122Ratregion
5507055UniSTS:2242761901657694215769611Ratregion
5500141UniSTS:2371612951686397288640023Ratregion
5500669RH1365902221697373739737595Ratregion
5500412GDB:5550190161345540413455633Ratregion
5500145UniSTS:2371502051669214246921629Ratregion
5500147UniSTS:2371641101697355159735625Ratregion
5503126LDB3881699086859909246Ratregion
5501522D2S3397621642552794256041Ratregion
5506595SH3BP5961665881636588259Ratregion
5501804MARC_13424-13425:1002294866:11021686476908648300Ratregion
5502772TKT1261657449175745156Ratregion
Position Markers

Flank 1: (D16Mit2)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2164,227,609 - 4,227,730 (+)MAPPER
Rnor_6.0165,098,584 - 5,098,704NCBI
Rnor_6.0165,013,802 - 5,013,922NCBI
Rnor_5.0164,954,192 - 4,954,312UniSTS
Rnor_5.0165,038,686 - 5,038,806UniSTS
RGSC_v3.4164,304,396 - 4,304,517RGD
RGSC_v3.4164,304,397 - 4,304,517UniSTS
RGSC_v3.1164,304,394 - 4,304,515RGD
Celera1610,945,533 - 10,945,653UniSTS
RH 3.4 Map168.3RGD
RH 3.4 Map168.3UniSTS
SHRSP x BN Map161.1599UniSTS
SHRSP x BN Map161.1599RGD
FHH x ACI Map163.1999RGD
Cytogenetic Map16p16UniSTS
Peak: (D16Rat124)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2166,604,487 - 6,604,614 (+)MAPPER
Rnor_6.0167,494,390 - 7,494,516NCBI
Rnor_5.0167,429,574 - 7,429,700UniSTS
RGSC_v3.4166,844,488 - 6,844,614RGD
RGSC_v3.4166,844,489 - 6,844,615UniSTS
RGSC_v3.1166,844,486 - 6,844,612RGD
Celera168,584,954 - 8,585,080UniSTS
RH 3.4 Map1654.4RGD
RH 3.4 Map1654.4UniSTS
RH 2.0 Map160.0RGD
Cytogenetic Map16p16UniSTS
Flank 2: (D16Rat30)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21616,039,659 - 16,039,848 (-)MAPPER
Rnor_6.01618,359,959 - 18,360,147NCBI
Rnor_6.01618,352,297 - 18,352,485NCBI
Rnor_5.01618,231,213 - 18,231,401UniSTS
Rnor_5.01618,238,875 - 18,239,063UniSTS
RGSC_v3.41616,536,788 - 16,536,977RGD
RGSC_v3.41616,536,789 - 16,536,977UniSTS
RGSC_v3.11616,536,787 - 16,536,975RGD
Celera1616,267,225 - 16,267,413UniSTS
RH 3.4 Map16146.3RGD
RH 3.4 Map16146.3UniSTS
RH 2.0 Map16106.7RGD
SHRSP x BN Map165.6699RGD


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631561Hcuc2Hepatic copper content QTL 22.8liver copper amount (VT:0003065)liver total copper weight (CMO:0001507)16139533949Rat
1582235Insul8Insulin level QTL 83.30.0063blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)16126727669Rat
2307172Activ4Activity QTL 43.710.00023locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)16133418960Rat
1354584Despr6Despair related QTL 63.10.0067locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16139533930Rat
2302380Slep6Serum leptin concentration QTL 63.36blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)16132139025Rat
1357403Slep4Serum leptin concentration QTL 43.91blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1619639137Rat
737819Hcas4Hepatocarcinoma susceptibility QTL 44.43liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)16422760946975965Rat
631517Scl9Serum cholesterol level QTL 93.3blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)161572643321034895Rat
1354625Despr7Despair related QTL 73.160.016locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16144977551Rat
9590151Scort8Serum corticosterone level QTL 88.450.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)16130836262Rat
12903955Kidm69Kidney mass QTL 690.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)168323804227609Rat
61338Bp23Blood pressure QTL 234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16422760949227609Rat
61405Niddm6Non-insulin dependent diabetes mellitus QTL 63.660.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)16422760948972724Rat
631830Alc7Alcohol consumption QTL 72.9consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16126727669Rat
7411664Foco30Food consumption QTL 30110.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)16144588133Rat
1600378Arunc4Aerobic running capacity QTL 40.03exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)1638024580345693Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)16422760943025077Rat
737826Alc11Alcohol consumption QTL 113.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16422760960252231Rat
1600369Hcas8Hepatocarcinoma susceptibility QTL 8liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)16122477621Rat
737825Alc13Alcohol consumption QTL 134.5consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16422760916039848Rat
2303566Bw90Body weight QTL 902body mass (VT:0001259)body weight (CMO:0000012)16139533930Rat
2312663Slep9Serum leptin concentration QTL 90.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1683223659492508Rat
2306902Bp339Blood pressure QTL 3390.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16338015043025077Rat
1300133Rf24Renal function QTL 243.64blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)16338015021361552Rat
2312660Bw95Body weight QTL 950.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)1683223659492508Rat
2312666Insul16Insulin level QTL 160.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1683223659492508Rat
634355Rends4Renal damage susceptibility QTL 40.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)16126727669Rat
61372Bp40Blood pressure QTL 402.2blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)16422773017696785Rat
2301406Kidm39Kidney mass QTL 390.002kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)16285170915884239Rat
2293343Glom16Glomerulus QTL 167.4kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1683223646053497Rat
2312669Stl23Serum triglyceride level QTL 230.01blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1683223659492508Rat
6903319Bw114Body weight QTL 1142.70.0037body mass (VT:0001259)body weight (CMO:0000012)16143534949Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene Alc13


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-04-14 Alc13  Alcohol consumption QTL 13    Alcohol preference QTL 13  Name updated 1299863 APPROVED

RGD Curation Notes
Note Type Note Reference
qtl_cross_pair HAD2xLAD2  
qtl_cross_type Intercross  
qtl_general crossing of replicate lines of HAD1 x LAD1 supported the existence of QTL phenotypes in this region 731212