Rps24l3 (ribosomal protein S24 like 3) - Rat Genome Database

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Gene: Rps24l3 (ribosomal protein S24 like 3) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Rps24l3
Name: ribosomal protein S24 like 3
RGD ID: 1564325
Description: Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be located in cytosolic ribosome. Predicted to be part of ribosomal subunit. Human ortholog(s) of this gene implicated in Diamond-blackfan anemia 3. Orthologous to human RPS24 (ribosomal protein S24); INTERACTS WITH vinclozolin.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 40S ribosomal protein S24-like; AC099108.1; LOC100912267; LOC306259; RGD1564325; ribosomal protein S24 like 1; Rps24l1; similar to ribosomal protein S24; small ribosomal subunit protein eS24-like
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8166,527,920 - 6,528,745 (-)NCBIGRCr8
mRatBN7.2166,521,670 - 6,522,244 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl166,521,834 - 6,522,235 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0167,411,681 - 7,412,594 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl167,411,749 - 7,412,150 (-)NCBIRnor6.0rn6Rnor6.0
Rnor_5.0167,340,738 - 7,341,629 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4166,759,333 - 6,759,734 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera168,666,383 - 8,667,286 (+)NCBICelera
Cytogenetic Map16p16NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
translation  (IEA)

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Rps24l3
6 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:36
Count of miRNA genes:18
Interacting mature miRNAs:18
Transcripts:ENSRNOT00000047252, ENSRNOT00000067494
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631561Hcuc2Hepatic copper content QTL 22.8liver copper amount (VT:0003065)liver total copper weight (CMO:0001507)16139533949Rat
1582235Insul8Insulin level QTL 83.30.0063blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)16126727669Rat
2307172Activ4Activity QTL 43.710.00023locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)16133418960Rat
1354584Despr6Despair related QTL 63.10.0067locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16139533930Rat
1357403Slep4Serum leptin concentration QTL 43.91blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1619639137Rat
2302380Slep6Serum leptin concentration QTL 63.36blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)16132139025Rat
737819Hcas4Hepatocarcinoma susceptibility QTL 44.43liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)16422760946975965Rat
9590151Scort8Serum corticosterone level QTL 88.450.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)16130836262Rat
1354625Despr7Despair related QTL 73.160.016locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16144977551Rat
61338Bp23Blood pressure QTL 234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16422760949227609Rat
61405Niddm6Non-insulin dependent diabetes mellitus QTL 63.660.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)16422760948972724Rat
631830Alc7Alcohol consumption QTL 72.9consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16126727669Rat
7411664Foco30Food consumption QTL 30110.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)16144588133Rat
1600378Arunc4Aerobic running capacity QTL 40.03exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)1638024580345693Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)16422760943025077Rat
1600369Hcas8Hepatocarcinoma susceptibility QTL 8liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)16122477621Rat
737826Alc11Alcohol consumption QTL 113.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16422760960252231Rat
737825Alc13Alcohol consumption QTL 134.5consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16422760916039848Rat
2303566Bw90Body weight QTL 902body mass (VT:0001259)body weight (CMO:0000012)16139533930Rat
2312663Slep9Serum leptin concentration QTL 90.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1683223659492508Rat
2306902Bp339Blood pressure QTL 3390.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16338015043025077Rat
1300133Rf24Renal function QTL 243.64blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)16338015021361552Rat
2312660Bw95Body weight QTL 950.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)1683223659492508Rat
2312666Insul16Insulin level QTL 160.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1683223659492508Rat
634355Rends4Renal damage susceptibility QTL 40.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)16126727669Rat
61372Bp40Blood pressure QTL 402.2blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)16422773017696785Rat
2293343Glom16Glomerulus QTL 167.4kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1683223646053497Rat
2301406Kidm39Kidney mass QTL 390.002kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)16285170915884239Rat
6903319Bw114Body weight QTL 1142.70.0037body mass (VT:0001259)body weight (CMO:0000012)16143534949Rat
2312669Stl23Serum triglyceride level QTL 230.01blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1683223659492508Rat


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSRNOT00000047252   ⟹   ENSRNOP00000050941
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl166,521,834 - 6,522,235 (-)Ensembl
RefSeq Acc Id: XM_008771057   ⟹   XP_008769279
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8166,527,920 - 6,528,745 (-)NCBI
mRatBN7.2166,521,670 - 6,522,244 (-)NCBI
Rnor_6.0167,411,681 - 7,412,594 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008769279 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000013588
  ENSRNOP00000050941.2
RefSeq Acc Id: XP_008769279   ⟸   XM_008771057
- UniProtKB: D4A6H5 (UniProtKB/TrEMBL),   D3ZFZ8 (UniProtKB/TrEMBL),   A0A0H2UHH9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000050941   ⟸   ENSRNOT00000047252

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZFZ8-F1-model_v2 AlphaFold D3ZFZ8 1-133 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1564325 AgrOrtholog
BioCyc Gene G2FUF-12152 BioCyc
Ensembl Genes ENSRNOG00000010189 UniProtKB/TrEMBL
  ENSRNOG00000046517 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000013588 UniProtKB/TrEMBL
  ENSRNOT00000047252.3 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.3370 UniProtKB/TrEMBL
InterPro eRP_eS24_sf UniProtKB/TrEMBL
  Ribosomal_L23/L15e_core_dom_sf UniProtKB/TrEMBL
  Ribosomal_S24e UniProtKB/TrEMBL
  Ribosomal_S24e_CS UniProtKB/TrEMBL
NCBI Gene 306259 ENTREZGENE
PANTHER 40S RIBOSOMAL PROTEIN S24 UniProtKB/TrEMBL
  40S RIBOSOMAL PROTEIN S24 UniProtKB/TrEMBL
  PTHR10496 UniProtKB/TrEMBL
Pfam Ribosomal_S24e UniProtKB/TrEMBL
PhenoGen Rps24l3 PhenoGen
PROSITE RIBOSOMAL_S24E UniProtKB/TrEMBL
RatGTEx ENSRNOG00000010189 RatGTEx
  ENSRNOG00000046517 RatGTEx
Superfamily-SCOP SSF54189 UniProtKB/TrEMBL
UniProt A0A0H2UHH9 ENTREZGENE, UniProtKB/TrEMBL
  D3ZFZ8 ENTREZGENE, UniProtKB/TrEMBL
  D4A6H5 ENTREZGENE
UniProt Secondary D4A6H5 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-10-16 Rps24l3  ribosomal protein S24 like 3  Rps24l1  ribosomal protein S24 like 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2023-09-19 Rps24l1  ribosomal protein S24 like 1  RGD1564325  similar to ribosomal protein S24  Symbol and Name Changed 1299863 APPROVED
2022-06-02 RGD1564325  similar to ribosomal protein S24  AC099108.1    Data merged from RGD:15005054 737654 PROVISIONAL
2019-11-08 AC099108.1        Symbol and Name status set to provisional 45752 PROVISIONAL
2015-07-29 RGD1564325  similar to ribosomal protein S24  LOC100912267  40S ribosomal protein S24-like  Data merged from RGD:6488148 737654 PROVISIONAL
2012-07-05 LOC100912267  40S ribosomal protein S24-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-04-30 RGD1564325  similar to ribosomal protein S24   RGD1564325_predicted  similar to ribosomal protein S24 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1564325_predicted  similar to ribosomal protein S24 (predicted)  LOC306259  similar to ribosomal protein S24  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC306259  similar to ribosomal protein S24      Symbol and Name status set to provisional 70820 PROVISIONAL