Advanced Search (OLGA)

Gene: Shld2 (shieldin complex subunit 2) Rattus norvegicus

Analyze

Symbol:

Shld2

Name:

shieldin complex subunit 2

RGD ID:

1565067

Description:

Predicted to be involved in negative regulation of double-strand break repair via homologous recombination; positive regulation of double-strand break repair via nonhomologous end joining; and positive regulation of isotype switching. Predicted to be located in actin cytoskeleton; chromosome; and nucleoplasm. Predicted to be active in nucleus and site of double-strand break. Orthologous to human SHLD2 (shieldin complex subunit 2); INTERACTS WITH 17beta-estradiol; 6-propyl-2-thiouracil; amitrole.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

Fam35a; family with sequence similarity 35, member A; hypothetical protein LOC364514; LOC364514; RGD1310009; uncharacterized protein LOC364514

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SHLD2 (shieldin complex subunit 2)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, Panther
Mus musculus (house mouse):	Shld2 (shieldin complex subunit 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Shld2 (shieldin complex subunit 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	LOC103784056 (shieldin complex subunit 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SHLD2 (shieldin complex subunit 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Shld2 (shieldin complex subunit 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SHLD2 (shieldin complex subunit 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SHLD2 (shieldin complex subunit 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Shld2 (shieldin complex subunit 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Shld2 (shieldin complex subunit 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	SHLD2 (shieldin complex subunit 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	si:ch211-134m17.9	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	shld2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	16	9,554,921 - 9,646,186 (-)	NCBI		GRCr8
mRatBN7.2	16	9,544,940 - 9,640,323 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	9,548,660 - 9,639,965 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	16	9,562,132 - 9,660,662 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	16	10,706,838 - 10,805,376 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	16	9,557,197 - 9,655,744 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	16	10,570,307 - 10,661,528 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	10,570,314 - 10,661,528 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	16	8,888,929 - 8,979,969 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	16	9,868,212 - 9,965,225 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	16	5,576,833 - 5,667,636 (+)	NCBI		Celera
Cytogenetic Map	16	p15	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

diabetes mellitus (ISO)

familial hyperinsulinemic hypoglycemia 6 (ISO)

genetic disease (ISO)

hyperinsulinism (ISO)

juvenile polyposis syndrome (ISO)

PTEN hamartoma tumor syndrome (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

(1->4)-beta-D-glucan (ISO)

1,2-dichloroethane (ISO)

17beta-estradiol (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (ISO)

aflatoxin M1 (ISO)

all-trans-retinoic acid (ISO)

amiodarone (ISO)

amitrole (EXP)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

Benzo[ghi]perylene (ISO)

bisphenol A (EXP)

bisphenol F (ISO)

cadmium dichloride (ISO)

carbon nanotube (ISO)

copper(II) sulfate (ISO)

crocidolite asbestos (ISO)

dexamethasone (ISO)

dibutyl phthalate (ISO)

dicrotophos (ISO)

dieldrin (EXP)

diuron (ISO)

doxorubicin (ISO)

folic acid (ISO)

formaldehyde (ISO)

furan (ISO)

indometacin (ISO)

inulin (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

methimazole (EXP)

paracetamol (ISO)

perfluorooctane-1-sulfonic acid (ISO)

pirinixic acid (ISO)

potassium chromate (ISO)

pregnenolone 16alpha-carbonitrile (ISO)

sodium arsenite (ISO)

sulfadimethoxine (EXP)

testosterone (ISO)

tetrachloromethane (ISO)

tetraphene (ISO)

thiram (ISO)

triphenyl phosphate (ISO)

ursodeoxycholic acid (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

negative regulation of double-strand break repair via homologous recombination (ISO)

positive regulation of double-strand break repair via nonhomologous end joining (ISO)

positive regulation of isotype switching (ISO)

regulation of double-strand break repair via homologous recombination (IBA)

Cellular Component

actin cytoskeleton (ISO)

chromosome (ISO)

nucleoplasm (ISO)

nucleus (IBA,ISO)

site of double-strand break (IBA,ISO)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
4.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:8889548	PMID:29656893	PMID:29789392

Genomics

Comparative Map Data

Shld2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	16	9,554,921 - 9,646,186 (-)	NCBI		GRCr8
mRatBN7.2	16	9,544,940 - 9,640,323 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	9,548,660 - 9,639,965 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	16	9,562,132 - 9,660,662 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	16	10,706,838 - 10,805,376 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	16	9,557,197 - 9,655,744 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	16	10,570,307 - 10,661,528 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	10,570,314 - 10,661,528 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	16	8,888,929 - 8,979,969 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	16	9,868,212 - 9,965,225 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	16	5,576,833 - 5,667,636 (+)	NCBI		Celera
Cytogenetic Map	16	p15	NCBI

SHLD2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	10	87,094,473 - 87,191,465 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	10	87,094,161 - 87,191,465 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	10	88,854,963 - 88,951,222 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	10	88,844,933 - 88,941,202 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	10	88,844,932 - 88,941,200	NCBI
Cytogenetic Map	10	q23.2	NCBI
HuRef	10	82,778,394 - 82,789,042 (+)	NCBI		HuRef
CHM1_1	10	89,136,724 - 89,232,977 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	10	87,978,839 - 88,075,088 (+)	NCBI		T2T-CHM13v2.0

Shld2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	14	33,958,905 - 34,032,528 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	14	33,958,990 - 34,032,450 (-)	Ensembl		GRCm39 Ensembl
GRCm38	14	34,236,948 - 34,310,651 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	14	34,237,033 - 34,310,493 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	14	35,050,219 - 35,123,689 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	14	33,066,133 - 33,139,458 (-)	NCBI		MGSCv36	mm8
Celera	14	30,499,098 - 30,576,001 (-)	NCBI		Celera
Cytogenetic Map	14	B	NCBI
cM Map	14	20.8	NCBI

Shld2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955510	6,075,510 - 6,114,898 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955510	6,021,477 - 6,114,745 (+)	NCBI	ChiLan1.0	ChiLan1.0

LOC103784056
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	8	59,311,152 - 59,353,528 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	10	59,316,469 - 59,359,047 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	10	43,572,547 - 43,624,201 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	14	87,923,049 - 87,928,101 (+)	NCBI	panpan1.1	PanPan1.1	panPan2

SHLD2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	4	34,665,111 - 34,740,645 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	4	34,688,245 - 34,763,705 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	4	34,654,858 - 34,732,283 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	4	35,023,800 - 35,101,252 (+)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	4	34,869,031 - 34,946,347 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	4	35,038,013 - 35,115,455 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	4	35,544,430 - 35,621,946 (+)	NCBI		UU_Cfam_GSD_1.0

Shld2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	43,682,657 - 43,768,173 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936601	5,315,261 - 5,396,301 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936601	5,315,297 - 5,400,752 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SHLD2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	88,005,611 - 88,121,352 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	88,005,599 - 88,121,155 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	95,538,054 - 95,600,923 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SHLD2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	9	44,565,105 - 44,652,926 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	9	44,564,792 - 44,605,562 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666048	4,377,310 - 4,464,557 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Shld2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624841	20,431 - 133,163 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624841	21,077 - 133,155 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Shld2
672 total Variants

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
631561	Hcuc2	Hepatic copper content QTL 2	2.8		liver copper amount (VT:0003065)	liver total copper weight (CMO:0001507)	16	1	39533949	Rat
1582235	Insul8	Insulin level QTL 8	3.3	0.0063	blood insulin amount (VT:0001560)	calculated serum insulin level (CMO:0000359)	16	1	26727669	Rat
2307172	Activ4	Activity QTL 4	3.71	0.00023	locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	16	1	33418960	Rat
1354584	Despr6	Despair related QTL 6	3.1	0.0067	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	16	1	39533930	Rat
1357403	Slep4	Serum leptin concentration QTL 4	3.91		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	16	1	9639137	Rat
2302380	Slep6	Serum leptin concentration QTL 6	3.36		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	16	1	32139025	Rat
737819	Hcas4	Hepatocarcinoma susceptibility QTL 4	4.43		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	16	4227609	46975965	Rat
9590151	Scort8	Serum corticosterone level QTL 8	8.45	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	16	1	30836262	Rat
1354625	Despr7	Despair related QTL 7	3.16	0.016	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	16	1	44977551	Rat
61338	Bp23	Blood pressure QTL 23	4.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	16	4227609	49227609	Rat
61405	Niddm6	Non-insulin dependent diabetes mellitus QTL 6	3.66	0.001	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	16	4227609	48972724	Rat
631830	Alc7	Alcohol consumption QTL 7	2.9		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	16	1	26727669	Rat
7411664	Foco30	Food consumption QTL 30	11	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	16	1	44588133	Rat
1600378	Arunc4	Aerobic running capacity QTL 4		0.03	exercise endurance trait (VT:0002332)	maximum distance run on treadmill (CMO:0001406)	16	380245	80345693	Rat
70183	BpQTLcluster13	Blood pressure QTL cluster 13	3.654		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	16	4227609	43025077	Rat
1600369	Hcas8	Hepatocarcinoma susceptibility QTL 8			liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	16	1	22477621	Rat
737826	Alc11	Alcohol consumption QTL 11	3.2		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	16	4227609	60252231	Rat
737825	Alc13	Alcohol consumption QTL 13	4.5		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	16	4227609	16039848	Rat
2303566	Bw90	Body weight QTL 90	2		body mass (VT:0001259)	body weight (CMO:0000012)	16	1	39533930	Rat
2312663	Slep9	Serum leptin concentration QTL 9		0.001	blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	16	832236	59492508	Rat
2306902	Bp339	Blood pressure QTL 339		0.01	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	16	3380150	43025077	Rat
1300133	Rf24	Renal function QTL 24	3.64		blood creatinine amount (VT:0005328)	creatinine clearance (CMO:0000765)	16	3380150	21361552	Rat
2312660	Bw95	Body weight QTL 95		0.05	inguinal fat pad mass (VT:0010424)	inguinal fat pad weight to body weight ratio (CMO:0001253)	16	832236	59492508	Rat
2312666	Insul16	Insulin level QTL 16		0.01	blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	16	832236	59492508	Rat
634355	Rends4	Renal damage susceptibility QTL 4		0.05	kidney blood vessel morphology trait (VT:0000530)	organ lesion measurement (CMO:0000677)	16	1	26727669	Rat
61372	Bp40	Blood pressure QTL 40	2.2		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	16	4227730	17696785	Rat
2293343	Glom16	Glomerulus QTL 16	7.4		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	16	832236	46053497	Rat
2301406	Kidm39	Kidney mass QTL 39		0.002	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	16	2851709	15884239	Rat
6903319	Bw114	Body weight QTL 114	2.7	0.0037	body mass (VT:0001259)	body weight (CMO:0000012)	16	1	43534949	Rat
2312669	Stl23	Serum triglyceride level QTL 23		0.01	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	16	832236	59492508	Rat

Markers in Region

D16Mgh3

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	9,638,913 - 9,639,137 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	10,660,513 - 10,660,736	NCBI	Rnor6.0
Rnor_5.0	16	8,978,954 - 8,979,177	UniSTS	Rnor5.0
RGSC_v3.4	16	9,964,210 - 9,964,433	UniSTS	RGSC3.4
RGSC_v3.4	16	9,964,209 - 9,964,433	RGD	RGSC3.4
RGSC_v3.1	16	9,964,207 - 9,964,431	RGD
Celera	16	5,577,625 - 5,577,848	UniSTS
Cytogenetic Map	16	p16	UniSTS

D16Rat111

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	16	9,616,980 - 9,617,133 (+)	Marker Load Pipeline
mRatBN7.2	16	9,610,723 - 9,610,876 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	10,632,323 - 10,632,475	NCBI	Rnor6.0
Rnor_5.0	16	8,950,916 - 8,951,068	UniSTS	Rnor5.0
RGSC_v3.4	16	9,936,042 - 9,936,194	UniSTS	RGSC3.4
RGSC_v3.4	16	9,936,041 - 9,936,194	RGD	RGSC3.4
RGSC_v3.1	16	9,935,977 - 9,936,344	RGD
Celera	16	5,605,767 - 5,605,907	UniSTS
FHH x ACI Map	16	5.4199	RGD
FHH x ACI Map	16	5.4199	UniSTS
Cytogenetic Map	16	p16	UniSTS

D16Mco9

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	9,638,921 - 9,639,125 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	10,660,521 - 10,660,724	NCBI	Rnor6.0
Rnor_5.0	16	8,978,962 - 8,979,165	UniSTS	Rnor5.0
RGSC_v3.4	16	9,964,218 - 9,964,421	UniSTS	RGSC3.4
RGSC_v3.4	16	9,964,217 - 9,964,421	RGD	RGSC3.4
RGSC_v3.1	16	9,964,215 - 9,964,419	RGD
Celera	16	5,577,637 - 5,577,840	UniSTS
Cytogenetic Map	16	p16	UniSTS

D16Arb11

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	9,639,189 - 9,639,391 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	10,660,789 - 10,660,990	NCBI	Rnor6.0
Rnor_5.0	16	8,979,230 - 8,979,431	UniSTS	Rnor5.0
RGSC_v3.4	16	9,964,485 - 9,964,687	RGD	RGSC3.4
RGSC_v3.4	16	9,964,486 - 9,964,687	UniSTS	RGSC3.4
RGSC_v3.1	16	9,964,483 - 9,964,685	RGD
Celera	16	5,577,371 - 5,577,572	UniSTS
Cytogenetic Map	16	p16	UniSTS

RH127633

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	9,587,907 - 9,588,085 (+)	MAPPER	mRatBN7.2
mRatBN7.2	20	15,938,432 - 15,938,632 (+)	MAPPER	mRatBN7.2
Rnor_6.0	20	17,076,057 - 17,076,256	NCBI	Rnor6.0
Rnor_6.0	16	10,609,508 - 10,609,685	NCBI	Rnor6.0
Rnor_5.0	16	8,928,049 - 8,928,226	UniSTS	Rnor5.0
Rnor_5.0	20	19,258,548 - 19,258,747	UniSTS	Rnor5.0
RGSC_v3.4	16	9,911,823 - 9,912,000	UniSTS	RGSC3.4
Celera	20	17,366,620 - 17,366,819	UniSTS
RH 3.4 Map	20	204.1	UniSTS
Cytogenetic Map	16	p16	UniSTS

RH134298

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	9,550,551 - 9,550,736 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	10,572,199 - 10,572,383	NCBI	Rnor6.0
Rnor_5.0	16	8,890,821 - 8,891,005	UniSTS	Rnor5.0
RGSC_v3.4	16	9,870,104 - 9,870,288	UniSTS	RGSC3.4
Celera	16	5,665,560 - 5,665,744	UniSTS
RH 3.4 Map	16	92.3	UniSTS
Cytogenetic Map	16	p16	UniSTS

AU047839

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	9,587,311 - 9,587,444 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	10,608,913 - 10,609,045	NCBI	Rnor6.0
Rnor_5.0	16	8,927,455 - 8,927,587	UniSTS	Rnor5.0
RGSC_v3.4	16	9,911,228 - 9,911,360	UniSTS	RGSC3.4
Celera	16	5,628,880 - 5,629,006	UniSTS
Cytogenetic Map	16	p16	UniSTS

GDB:277890

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	9,646,883 - 9,647,143 (+)	Marker Load Pipeline
Celera	16	5,575,880 - 5,576,138	UniSTS
Cytogenetic Map	16	p16	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001025028	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008771135	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008771136	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008771137	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600194	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600195	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600196	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600197	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600198	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039094703	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275584	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275586	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275587	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275588	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC109685	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC089872	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BF420607	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CB613349	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474046	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CR474249	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FM098539	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000016	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000085012 ⟹ ENSRNOP00000073233

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	16	9,548,660 - 9,639,965 (-)	Ensembl
Rnor_6.0 Ensembl	16	10,570,314 - 10,661,528 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000087737 ⟹ ENSRNOP00000069549

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	16	9,575,320 - 9,639,963 (-)	Ensembl
Rnor_6.0 Ensembl	16	10,596,833 - 10,603,850 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000100122 ⟹ ENSRNOP00000080208

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	16	9,576,904 - 9,639,963 (-)	Ensembl

RefSeq Acc Id:

NM_001025028 ⟹ NP_001020199

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	9,554,921 - 9,646,186 (-)	NCBI
mRatBN7.2	16	9,548,660 - 9,639,929 (-)	NCBI
Rnor_6.0	16	10,570,307 - 10,661,528 (-)	NCBI
Rnor_5.0	16	8,888,929 - 8,979,969 (-)	NCBI
RGSC_v3.4	16	9,868,212 - 9,965,225 (-)	RGD
Celera	16	5,576,833 - 5,667,636 (+)	RGD

Sequence:

show sequence

CGGAGCTGAAGCCGCCGAGGCGTTGGAGGAGTCCAGACTCATCCGGAATCGGGCTGTTGAGGGA
CGGGAAATCTAGAAGCTTCAGGACTGGAGGGAGTCCCTGATCCCACTGGCCTTGACTTTGGACA
AGGTTTTAATTTGTTCTAGTCAACTATTCAGCGATTTTGAGCAAAAAAGATTCTCTGGCCTTCA
GCATGATATTGGCTTGATGTGGAAAGATTAAGATTCTAGGCTAAAGGGAAGAAGCCATTAGAGA
AGAATACCCCGAGGTCCATGAGGACAATTTGTGATCAATGGTTACTCTTATGCCTTGACTTGCT
ATAAATTATGAATCGAGGACCTCAAGTTCACATATTTTGGGGTGCTCCAGTTGCTGCACTGAAA
ATGACAGTATCCCAGGAAACAGCCTCCTTAATGTCCACTGCCAACACCTGGGAAAAAGTCCAAC
TCTTTTTCAAACAGCGTTCTTTGTGTCTGAAGGCTGGAGATCAGGAGTTTAAAAGTCTGGAAGA
CTGTCAAGTCCCCGAAGGTTTTGGCCCACCCGGTCTTCTTAGTGGTCACCTTTTAACGACTTAT
GTGAATAGGTCTGCTCAGGCGGAAGAAGACTTTAAACATTCTGAGTCTGAAACACAGAATGTAA
AGTCCCAGAAGATTAGCCTAAGTGATATGACTAGTGTATGTCGACTTACGGACAGAGTTCAGCA
TTTACCTGAAGAAGAAAAATACCAAAAGCTTCCATATGAAAATAAGAAAATTATAGATGAGCAG
TCTAAAACTCAGTCAGATGCCTGCGTTCAGAACTTTCAAAGAGATGTGCTTCAGTTAGATCGTA
AGTGTGCAGCTGAACTGGATCTGGGCTGTAGTAGTGGACAGAAGAATACAGGGCCAGAGGCTGA
GGAAAAAAAACCAGAGCCAACAGGACATCGTGAAACACAAAGTCAGGAGAGCTTTGCCTCTGAC
ACACAGTGTGAACCACAGTCTGAGGGAGCAGTCAGGCAGGCCTCAGGCCAGAGAATATCTCCTG
ATACTGAATTTCTCAGGGTAATGACCGCCAGCCAGCGTGCTTTTCTAGCTCAAGGGAATGATAA
AGGTCAAGACTATATTAATAAGAGGACTGTAAACCTGGAGGCAGAACCTACAGGCAGTCAGGGA
GTCAGAGGAACTGAAGGGAATTTTAGTGAGCCTGGTGGAGATTTTGAAGAAGGATCTGAAAGTG
AGCAAAGCCAAGCATATTCCCTGGAACTTTTTAGTCCTGTTTGTCCTGAATCAGAAAGCAGTTA
CGGTCACATAAACCCTGGGAAAAGTCTTGAAGAAAATATAAGCTCTCCAGAACTTTCCAGTCGT
GAGGAAAACCTGCCACAAAATGAAGCACACGTTGAGTTGTGTGGCTCAGGAGTGCTGTGTTCCC
AACCAAGCAGCTCCCATCGAAGTACAGCTAAAAGGAGCCAGTGCTCTAAGGACAATGCCCGTCA
TTCTACAGCTCACTCTGAAGTCCATCAGGTGTCCAAGAAAGCAAGGATGGATTCCAATAGAAGA
GAGGCAGCCCAAGCAGTGCCCCAGAAGATCATGCCTGAATTTAAGGATAGTAAAAAAATATCAT
TAATAAAAAATTGTGATTCTAAAAGTCAGAAGTATAACTGCTTAGTCATGGTGCTAACCCCATG
TCACGTGAAGGAAATAAACGTAAAATCTGGACCGAATTCTGGTTCTAAAGTGCCGTTAGCAACG
ATTGTAGTAGTCGATCAGTCGGAGATTAAGAAGAGGGTTGTTCTGTGGAGGACTGCAGCATTTT
GGGCACTTACAGTGTTTCTTGGTGATATAATTCTACTTACAGATGTTGTTCTTTATGAGGACCA
GTGGATTGGTGAGACAGTACTCCAATCAACACTTACCAGTCAGTTACTGAATCTGGGAAGTTAC
TCATATGTCCAGCCCGAAAAATATTCCAATATAATTGCCAATGTTATACTTCAGGATTTACTGA
CATATGTGTCTTCAAAACATTCCTATCTCAAAGATCTGCCTCAGAGGCAGCCTCAGAAAATCAA
CACCGTAAAGTTTGTGGAATTGGAGCAGTTGCAGCCTGATACATTAGTCCATGCAGTGCTCAGA
GTAGTGAACATCACTGTATTGACAGAGGCATTATATAGTTACAGAGGACAAAAGCAAAGAAAGG
TTGTGTTAACGGTGGAACAGGCTCAAGGTCAACATTACCTGCTTGTATTATGGGGTCCTGGAGC
AGCCTGGCATACTCAACTTCAAAGGAAAAAAGATTGTATTTGGGAATTTAAGTACCTTTTTGTT
CAGCGGAACTGCATACTAGAAAACTTAGAATTACATACAACACTGTGGTCATCCTGTGAATGCC
TGTTTGATGATGATACAAGAGCAATTTCATTTAAAGCAAAATTTCAAAAAAATACATCCTCCTT
TGTCAAGATATCAGACTTAGCAACTCACCTAACAGATAAGTATTCAGGAGTGGTTCTGATCACA
GCCAGGGTGTCAGAGCTGGTGTTCTGTGCTACAGCAGCTCAGAAGGTGGCTCTGAATGCTCGCA
GCAGTCTGCAGAGCATCTTCTCGTCTCTTCCCCGTATCACCTATGCTGGCTGTGCGCAGTGCGG
CTCAGAACTGCAGACGGATGAGAACAGGATCTACAGACAGTGTCTGGGTTGCTTGCCGTTTGTT
GGGAAGAAAATGTTCTACAGACCGGCTTTAATGACCATAGTTGATGGAAGACATAATACTTATG
TCCATGTTGGGTCGAAGATGATGGAGCAGATTCTTTTCAACATTTCTCCAGATTGCCTCAGCAG
AGTGATAGCGCCTTCCTCAGAGGTCACCTACGGCATGGTCGCTGCGGACCTGCTGCACTCCTTG
TTGGCAGTCAGTGCAGAACCTTGCGTGCTGAAGATCCAGAGCCTTTTTGAGTTGGATGAAAACA
GCTACCCCCTGCAGCAGAACCTCTCCCTGTTAGATTTCTGCCCTGACTCGTTTAAGATGTGGAG
ACCAGGACTTGCTCTAAGGCCAGAGGAGGACACTGGAGTTGTTCCAAAGGAGTGATGAAACAAT
CTGTCTTTTGAAGATTTATTTACTTTTACTATATGTACATAAGTGTTTTGCTTATGTATGTCTA
TGCATCCACAGAGGCCAGGAGAGGGTGCCAGATCCCCTGAGACTAGAGTAATGGATGCTTGTGA
GCCGCCGTGTAGATTTTAAGAAAGTGCTCTTAACTGCTGAGCCATCCAACCCAATGATCTACCT
TTTGAAATAAATGAAATGACAGGGATTTTGCTTAGAGTTTTTAAAATAAGTAATTTATTAGTGA
AATCTAATTGTAATAAATTATTTTTTAAGAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_008771135 ⟹ XP_008769357

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	9,554,921 - 9,646,156 (-)	NCBI
mRatBN7.2	16	9,548,958 - 9,640,177 (-)	NCBI
Rnor_6.0	16	10,570,307 - 10,661,432 (-)	NCBI

Sequence:

show sequence

GTCCCTGATCCCACTGGCCTTGACTTTGGACAAGGTTTTAATTTGTTCTAGTCAACTATTCAGC
GATTTTGAGCAAAAAAGATTCTCTGGCCTTCAGCATGATATTGGCTTGATGTGGAAAGATTAAG
GTTTCTCTGGATCATTTGCTCCATGGGGCAGAAGAATGGTTGGGGAGATGATGAGCAAGGCAGG
TCTCTACCTGTGGGCCTCTCAGGTTTCTGAGTCCTTCTTTGCTGGTGGATTGGAGCAGGCTGTC
GACAGCCATCTTTGGTATTCAAGTAAGACATCTGCAGTGACACTGTGGACAGCGTCCAAAGCAC
CAAGAAATTATGAATCGAGGACCTCAAGTTCACATATTTTGGGGTGCTCCAGTTGCTGCACTGA
AAATGACAGTATCCCAGGAAACAGCCTCCTTAATGTCCACTGCCAACACCTGGGAAAATGTCCA
ACTCTTTTTCAAACAGCGTTCTTTGTGTCTGAAGGCTGGAGATCAGGAGTTTAAAAGTCTGGAA
GACTGTCAAGTCCCCGAAGGTTTTGGCCCACCCGGTCTTCTTAGTGGTCACCTTTTAACGACTT
ATGTGAATAGGTCTGCTCAGGCGGAAGAAGACTTTAAACATTCTGAGTCTGAAACACAGAATGT
AAAGTCCCAGAAGATTAGCCTAAGTGATATGACTAGTGTATGTCGACTTACGGACAGAGTTCAG
CATTTACCTGAAGAAGAAAAATACCAAAAGCTTCCATATGAAAATAAGAAAATTATAGATGAGC
AGTCTAAAACTCAGTCAGATGCCTGCGTTCAGAACTTTCAAAGAGATGTGCTTCAGTTAGATCG
TAAGTGTGCAGCTGAACTGGATCTGGGCTGTAGTAGTGGACAGAAGAATACAGGGCCAGAGGCT
GAGGAAAAAAAACCAGAGCCAACAGGACATCGTGAAACACAAAGTCAGGAGAGCTTTGCCTCTG
ACACACAGTGTGAACCACAGTCTGAGGGAGCAGTCAGGCAGGCCTCAGGCCAGAGAATATCTCC
TGATACTGAATTTCTCAGGGTAATGACCGCCAGCCAGCGTGCTTTTCTAGCTCAAGGGAATGAT
AAAGGTCAAGACTATATTAATAAGAGGACTGTAAACCTGGAGGCAGAACCTACAGGCAGTCAGG
GAGTCAGAGGAACTGAAGGGAATTTTAGTGAGCCTGGTGGAGATTTTGAAGAAGGATCTGAAAG
TGAGCAAAGCCAAGCATATTCCCTGGAACTTTTTAGTCCTGTTTGTCCTGAATCAGAAAGCAGT
TACGGTCACATAAACCCTGGGAAAAGTCTTGAAGAAAATATAAGCTCTCCAGAACTTTCCAGTC
GTGAGGAAAACCTGCCACAAAATGAAGCACACGTTGAGTTGTGTGGCTCAGGAGTGCTGTGTTC
CCAACCAAGCAGCTCCCATCGAAGTACAGCTAAAAGGAGCCAGTGCTCTAAGGACAATGCCCGT
CATTCTACAGCTCACTCTGAAGTCCATCAGGTGTCCAAGAAAGCAAGGATGGATTCCAATAGAA
GAGAGGCAGCCCAAGCAGTGCCCCAGAAGATCATGCCTGAATTTAAGGATAGTAAAAAAATATC
ATTAATAAAAAATTGTGATTCTAAAAGTCAGAAGTATAACTGCTTAGTCATGGTGCTAACCCCA
TGTCACGTGAAGGAAATAAACGTAAAATCTGGACCGAATTCTGGTTCTAAAGTGCCGTTAGCAA
CGATTGTAGTAGTCGATCAGTCGGAGATTAAGAAGAGGGTTGTTCTGTGGAGGACTGCAGCATT
TTGGGCACTTACAGTGTTTCTTGGTGATATAATTCTACTTACAGATGTTGTTCTTTATGAGGAC
CAGTGGATTGGTGAGACAGTACTCCAATCAACACTTACCAGTCAGTTACTGAATCTGGGAAGTT
ACTCATATGTCCAGCCCGAAAAATATTCCAATATAATTGCCAATGTTATACTTCAGGATTTACT
GACATATGTGTCTTCAAAACATTCCTATCTCAAAGATCTGCCTCAGAGGCAGCCTCAGAAAATC
AACACCGTAAAGTTTGTGGAATTGGAGCAGTTGCAGCCTGATACATTAGTCCATGCAGTGCTCA
GAGTAGTGAACATCACTGTATTGACAGAGGCATTATATAGTTACAGAGGACAAAAGCAAAGAAA
GGTTGTGTTAACGGTGGAACAGGCTCAAGGTCAACATTACCTGCTTGTATTATGGGGTCCTGGA
GCAGCCTGGCATACTCAACTTCAAAGGAAAAAAGATTGTATTTGGGAATTTAAGTACCTTTTTG
TTCAGCGGAACTGCATACTAGAAAACTTAGAATTACATACAACACTGTGGTCATCCTGTGAATG
CCTGTTTGATGATGATACAAGAGCAATTTCATTTAAAGCAAAATTTCAAAAAAATACATCCTCC
TTTGTCAAGATATCAGACTTAGCAACTCACCTAACAGATAAGTATTCAGGAGTGGTTCTGATCA
CAGCCAGGGTGTCAGAGCTGGTGTTCTGTGCTACAGCAGCTCAGAAGGTGGCTCTGAATGCTCG
CAGCAGTCTGCAGAGCATCTTCTCGTCTCTTCCCCGTATCACCTATGCTGGCTGTGCGCAGTGC
GGCTCAGAACTGCAGACGGATGAGAACAGGATCTACAGACAGTGTCTGGGTTGCTTGCCGTTTG
TTGGGAAGAAAATGTTCTACAGACCGGCTTTAATGACCATAGTTGATGGAAGACATAATACTTA
TGTCCATGTTGGGTCGAAGATGATGGAGCAGATTCTTTTCAACATTTCTCCAGATTGCCTCAGC
AGAGTGATAGTGCCTTCCTCAGAGGTCACCTACGGCATGGTCGCTGCGGACCTGCTGCACTCCT
TGTTGGCAGTCAGTGCAGAACCTTGCGTGCTGAAGATCCAGAGCCTTTTCGAGTTGGATGAAAA
CAGCTACCCCCTGCAGCAGAACCTCTCCCTGTTAGATTTCTGCCCTGACTCGTTTAAGATGTGG
AGACCAGGACTTGCTCTAAGGCCAGAGGAGGACACTGGAGTTGTTCCAAAGGAGTGATGAAACA
ATCTGTCTTTTGAAGATTTATTTACTTTTACTATATGTACATAAGTGTTTTGCTTATGTATGTC
TATGCATCCACAGAGGCCAGGAGAGGGTGCCAGATCCCCTGAGACTAGAGTAATGGATGCTTGT
GAGCCGCCGTGTAGATTTTAAGAAAGTGCTCTTAACTGCTGAGCCATCCAACCCAATGATCTAC
CTTTTGAAATAAATGAAATGACAGGGATTTTGCTTAGAGTTTTTAAAATAAGTAATTTATTAGC
GAAATCTAATTGTAATAAATTATTTTTTAAGAAAA

hide sequence

RefSeq Acc Id:

XM_008771136 ⟹ XP_008769358

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	9,554,921 - 9,646,156 (-)	NCBI
mRatBN7.2	16	9,548,958 - 9,640,177 (-)	NCBI
Rnor_6.0	16	10,570,307 - 10,661,432 (-)	NCBI

Sequence:

show sequence

GTCCCTGATCCCACTGGCCTTGACTTTGGACAAGGTTTTAATTTGTTCTAGTCAACTATTCAGC
GATTTTGAGCAAAAAAGATTCTCTGGCCTTCAGCATGATATTGGCTTGATGTGGAAAGATTAAG
AAATTATGAATCGAGGACCTCAAGTTCACATATTTTGGGGTGCTCCAGTTGCTGCACTGAAAAT
GACAGTATCCCAGGAAACAGCCTCCTTAATGTCCACTGCCAACACCTGGGAAAATGTCCAACTC
TTTTTCAAACAGCGTTCTTTGTGTCTGAAGGCTGGAGATCAGGAGTTTAAAAGTCTGGAAGACT
GTCAAGTCCCCGAAGGTTTTGGCCCACCCGGTCTTCTTAGTGGTCACCTTTTAACGACTTATGT
GAATAGGTCTGCTCAGGCGGAAGAAGACTTTAAACATTCTGAGTCTGAAACACAGAATGTAAAG
TCCCAGAAGATTAGCCTAAGTGATATGACTAGTGTATGTCGACTTACGGACAGAGTTCAGCATT
TACCTGAAGAAGAAAAATACCAAAAGCTTCCATATGAAAATAAGAAAATTATAGATGAGCAGTC
TAAAACTCAGTCAGATGCCTGCGTTCAGAACTTTCAAAGAGATGTGCTTCAGTTAGATCGTAAG
TGTGCAGCTGAACTGGATCTGGGCTGTAGTAGTGGACAGAAGAATACAGGGCCAGAGGCTGAGG
AAAAAAAACCAGAGCCAACAGGACATCGTGAAACACAAAGTCAGGAGAGCTTTGCCTCTGACAC
ACAGTGTGAACCACAGTCTGAGGGAGCAGTCAGGCAGGCCTCAGGCCAGAGAATATCTCCTGAT
ACTGAATTTCTCAGGGTAATGACCGCCAGCCAGCGTGCTTTTCTAGCTCAAGGGAATGATAAAG
GTCAAGACTATATTAATAAGAGGACTGTAAACCTGGAGGCAGAACCTACAGGCAGTCAGGGAGT
CAGAGGAACTGAAGGGAATTTTAGTGAGCCTGGTGGAGATTTTGAAGAAGGATCTGAAAGTGAG
CAAAGCCAAGCATATTCCCTGGAACTTTTTAGTCCTGTTTGTCCTGAATCAGAAAGCAGTTACG
GTCACATAAACCCTGGGAAAAGTCTTGAAGAAAATATAAGCTCTCCAGAACTTTCCAGTCGTGA
GGAAAACCTGCCACAAAATGAAGCACACGTTGAGTTGTGTGGCTCAGGAGTGCTGTGTTCCCAA
CCAAGCAGCTCCCATCGAAGTACAGCTAAAAGGAGCCAGTGCTCTAAGGACAATGCCCGTCATT
CTACAGCTCACTCTGAAGTCCATCAGGTGTCCAAGAAAGCAAGGATGGATTCCAATAGAAGAGA
GGCAGCCCAAGCAGTGCCCCAGAAGATCATGCCTGAATTTAAGGATAGTAAAAAAATATCATTA
ATAAAAAATTGTGATTCTAAAAGTCAGAAGTATAACTGCTTAGTCATGGTGCTAACCCCATGTC
ACGTGAAGGAAATAAACGTAAAATCTGGACCGAATTCTGGTTCTAAAGTGCCGTTAGCAACGAT
TGTAGTAGTCGATCAGTCGGAGATTAAGAAGAGGGTTGTTCTGTGGAGGACTGCAGCATTTTGG
GCACTTACAGTGTTTCTTGGTGATATAATTCTACTTACAGATGTTGTTCTTTATGAGGACCAGT
GGATTGGTGAGACAGTACTCCAATCAACACTTACCAGTCAGTTACTGAATCTGGGAAGTTACTC
ATATGTCCAGCCCGAAAAATATTCCAATATAATTGCCAATGTTATACTTCAGGATTTACTGACA
TATGTGTCTTCAAAACATTCCTATCTCAAAGATCTGCCTCAGAGGCAGCCTCAGAAAATCAACA
CCGTAAAGTTTGTGGAATTGGAGCAGTTGCAGCCTGATACATTAGTCCATGCAGTGCTCAGAGT
AGTGAACATCACTGTATTGACAGAGGCATTATATAGTTACAGAGGACAAAAGCAAAGAAAGGTT
GTGTTAACGGTGGAACAGGCTCAAGGTCAACATTACCTGCTTGTATTATGGGGTCCTGGAGCAG
CCTGGCATACTCAACTTCAAAGGAAAAAAGATTGTATTTGGGAATTTAAGTACCTTTTTGTTCA
GCGGAACTGCATACTAGAAAACTTAGAATTACATACAACACTGTGGTCATCCTGTGAATGCCTG
TTTGATGATGATACAAGAGCAATTTCATTTAAAGCAAAATTTCAAAAAAATACATCCTCCTTTG
TCAAGATATCAGACTTAGCAACTCACCTAACAGATAAGTATTCAGGAGTGGTTCTGATCACAGC
CAGGGTGTCAGAGCTGGTGTTCTGTGCTACAGCAGCTCAGAAGGTGGCTCTGAATGCTCGCAGC
AGTCTGCAGAGCATCTTCTCGTCTCTTCCCCGTATCACCTATGCTGGCTGTGCGCAGTGCGGCT
CAGAACTGCAGACGGATGAGAACAGGATCTACAGACAGTGTCTGGGTTGCTTGCCGTTTGTTGG
GAAGAAAATGTTCTACAGACCGGCTTTAATGACCATAGTTGATGGAAGACATAATACTTATGTC
CATGTTGGGTCGAAGATGATGGAGCAGATTCTTTTCAACATTTCTCCAGATTGCCTCAGCAGAG
TGATAGTGCCTTCCTCAGAGGTCACCTACGGCATGGTCGCTGCGGACCTGCTGCACTCCTTGTT
GGCAGTCAGTGCAGAACCTTGCGTGCTGAAGATCCAGAGCCTTTTCGAGTTGGATGAAAACAGC
TACCCCCTGCAGCAGAACCTCTCCCTGTTAGATTTCTGCCCTGACTCGTTTAAGATGTGGAGAC
CAGGACTTGCTCTAAGGCCAGAGGAGGACACTGGAGTTGTTCCAAAGGAGTGATGAAACAATCT
GTCTTTTGAAGATTTATTTACTTTTACTATATGTACATAAGTGTTTTGCTTATGTATGTCTATG
CATCCACAGAGGCCAGGAGAGGGTGCCAGATCCCCTGAGACTAGAGTAATGGATGCTTGTGAGC
CGCCGTGTAGATTTTAAGAAAGTGCTCTTAACTGCTGAGCCATCCAACCCAATGATCTACCTTT
TGAAATAAATGAAATGACAGGGATTTTGCTTAGAGTTTTTAAAATAAGTAATTTATTAGCGAAA
TCTAATTGTAATAAATTATTTTTTAAGAAAA

hide sequence

RefSeq Acc Id:

XM_008771137 ⟹ XP_008769359

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	9,554,921 - 9,596,925 (-)	NCBI
mRatBN7.2	16	9,548,958 - 9,590,667 (-)	NCBI
Rnor_6.0	16	10,570,307 - 10,604,829 (-)	NCBI

Sequence:

show sequence

GGCAAAGCCTTTGCACGATAAATTATGAATCGAGGACCTCAAGTTCACATATTTTGGGGTGCTC
CAGTTGCTGCACTGAAAATGACAGTATCCCAGGAAACAGCCTCCTTAATGTCCACTGCCAACAC
CTGGGAAAATGTCCAACTCTTTTTCAAACAGCGTTCTTTGTGTCTGAAGGCTGGAGATCAGGAG
TTTAAAAGTCTGGAAGACTGTCAAGTCCCCGAAGGTTTTGGCCCACCCGGTCTTCTTAGTGGTC
ACCTTTTAACGACTTATGTGAATAGGTCTGCTCAGGCGGAAGAAGACTTTAAACATTCTGAGTC
TGAAACACAGAATGTAAAGTCCCAGAAGATTAGCCTAAGTGATATGACTAGTGTATGTCGACTT
ACGGACAGAGTTCAGCATTTACCTGAAGAAGAAAAATACCAAAAGCTTCCATATGAAAATAAGA
AAATTATAGATGAGCAGTCTAAAACTCAGTCAGATGCCTGCGTTCAGAACTTTCAAAGAGATGT
GCTTCAGTTAGATCGTAAGTGTGCAGCTGAACTGGATCTGGGCTGTAGTAGTGGACAGAAGAAT
ACAGGGCCAGAGGCTGAGGAAAAAAAACCAGAGCCAACAGGACATCGTGAAACACAAAGTCAGG
AGAGCTTTGCCTCTGACACACAGTGTGAACCACAGTCTGAGGGAGCAGTCAGGCAGGCCTCAGG
CCAGAGAATATCTCCTGATACTGAATTTCTCAGGGTAATGACCGCCAGCCAGCGTGCTTTTCTA
GCTCAAGGGAATGATAAAGGTCAAGACTATATTAATAAGAGGACTGTAAACCTGGAGGCAGAAC
CTACAGGCAGTCAGGGAGTCAGAGGAACTGAAGGGAATTTTAGTGAGCCTGGTGGAGATTTTGA
AGAAGGATCTGAAAGTGAGCAAAGCCAAGCATATTCCCTGGAACTTTTTAGTCCTGTTTGTCCT
GAATCAGAAAGCAGTTACGGTCACATAAACCCTGGGAAAAGTCTTGAAGAAAATATAAGCTCTC
CAGAACTTTCCAGTCGTGAGGAAAACCTGCCACAAAATGAAGCACACGTTGAGTTGTGTGGCTC
AGGAGTGCTGTGTTCCCAACCAAGCAGCTCCCATCGAAGTACAGCTAAAAGGAGCCAGTGCTCT
AAGGACAATGCCCGTCATTCTACAGCTCACTCTGAAGTCCATCAGGTGTCCAAGAAAGCAAGGA
TGGATTCCAATAGAAGAGAGGCAGCCCAAGCAGTGCCCCAGAAGATCATGCCTGAATTTAAGGA
TAGTAAAAAAATATCATTAATAAAAAATTGTGATTCTAAAAGTCAGAAGTATAACTGCTTAGTC
ATGGTGCTAACCCCATGTCACGTGAAGGAAATAAACGTAAAATCTGGACCGAATTCTGGTTCTA
AAGTGCCGTTAGCAACGATTGTAGTAGTCGATCAGTCGGAGATTAAGAAGAGGGTTGTTCTGTG
GAGGACTGCAGCATTTTGGGCACTTACAGTGTTTCTTGGTGATATAATTCTACTTACAGATGTT
GTTCTTTATGAGGACCAGTGGATTGGTGAGACAGTACTCCAATCAACACTTACCAGTCAGTTAC
TGAATCTGGGAAGTTACTCATATGTCCAGCCCGAAAAATATTCCAATATAATTGCCAATGTTAT
ACTTCAGGATTTACTGACATATGTGTCTTCAAAACATTCCTATCTCAAAGATCTGCCTCAGAGG
CAGCCTCAGAAAATCAACACCGTAAAGTTTGTGGAATTGGAGCAGTTGCAGCCTGATACATTAG
TCCATGCAGTGCTCAGAGTAGTGAACATCACTGTATTGACAGAGGCATTATATAGTTACAGAGG
ACAAAAGCAAAGAAAGGTTGTGTTAACGGTGGAACAGGCTCAAGGTCAACATTACCTGCTTGTA
TTATGGGGTCCTGGAGCAGCCTGGCATACTCAACTTCAAAGGAAAAAAGATTGTATTTGGGAAT
TTAAGTACCTTTTTGTTCAGCGGAACTGCATACTAGAAAACTTAGAATTACATACAACACTGTG
GTCATCCTGTGAATGCCTGTTTGATGATGATACAAGAGCAATTTCATTTAAAGCAAAATTTCAA
AAAAATACATCCTCCTTTGTCAAGATATCAGACTTAGCAACTCACCTAACAGATAAGTATTCAG
GAGTGGTTCTGATCACAGCCAGGGTGTCAGAGCTGGTGTTCTGTGCTACAGCAGCTCAGAAGGT
GGCTCTGAATGCTCGCAGCAGTCTGCAGAGCATCTTCTCGTCTCTTCCCCGTATCACCTATGCT
GGCTGTGCGCAGTGCGGCTCAGAACTGCAGACGGATGAGAACAGGATCTACAGACAGTGTCTGG
GTTGCTTGCCGTTTGTTGGGAAGAAAATGTTCTACAGACCGGCTTTAATGACCATAGTTGATGG
AAGACATAATACTTATGTCCATGTTGGGTCGAAGATGATGGAGCAGATTCTTTTCAACATTTCT
CCAGATTGCCTCAGCAGAGTGATAGTGCCTTCCTCAGAGGTCACCTACGGCATGGTCGCTGCGG
ACCTGCTGCACTCCTTGTTGGCAGTCAGTGCAGAACCTTGCGTGCTGAAGATCCAGAGCCTTTT
CGAGTTGGATGAAAACAGCTACCCCCTGCAGCAGAACCTCTCCCTGTTAGATTTCTGCCCTGAC
TCGTTTAAGATGTGGAGACCAGGACTTGCTCTAAGGCCAGAGGAGGACACTGGAGTTGTTCCAA
AGGAGTGATGAAACAATCTGTCTTTTGAAGATTTATTTACTTTTACTATATGTACATAAGTGTT
TTGCTTATGTATGTCTATGCATCCACAGAGGCCAGGAGAGGGTGCCAGATCCCCTGAGACTAGA
GTAATGGATGCTTGTGAGCCGCCGTGTAGATTTTAAGAAAGTGCTCTTAACTGCTGAGCCATCC
AACCCAATGATCTACCTTTTGAAATAAATGAAATGACAGGGATTTTGCTTAGAGTTTTTAAAAT
AAGTAATTTATTAGCGAAATCTAATTGTAATAAATTATTTTTTAAGAAAA

hide sequence

RefSeq Acc Id:

XM_017600194 ⟹ XP_017455683

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	9,554,921 - 9,646,156 (-)	NCBI
mRatBN7.2	16	9,548,660 - 9,640,177 (-)	NCBI
Rnor_6.0	16	10,570,307 - 10,661,432 (-)	NCBI

Sequence:

show sequence

GTCCCTGATCCCACTGGCCTTGACTTTGGACAAGGTTTTAATTTGTTCTAGTCAACTATTCAGC
GATTTTGAGCAAAAAAGATTCTCTGGCCTTCAGCATGATATTGGCTTGATGTGGAAAGATTAAG
ATTCTAGGCTAAAGGGAAGAAGCCATTAGAGAAGAATACCCCGAGGTCCATGAGGACAATTTGT
GATCAATGGTTACTCTTATGCCTTGACTTGCTATATGTTGTTCTTTATGAGGACCAGTGGATTG
GTGAGACAGTACTCCAATCAACACTTACCAGTCAGTTACTGAATCTGGGAAGTTACTCATATGT
CCAGCCCGAAAAATATTCCAATATAATTGCCAATGTTATACTTCAGGATTTACTGACATATGTG
TCTTCAAAACATTCCTATCTCAAAGATCTGCCTCAGAGGCAGCCTCAGAAAATCAACACCGTAA
AGTTTGTGGAATTGGAGCAGTTGCAGCCTGATACATTAGTCCATGCAGTGCTCAGAGTAGTGAA
CATCACTGTATTGACAGAGGCATTATATAGTTACAGAGGACAAAAGCAAAGAAAGGTTGTGTTA
ACGGTGGAACAGGCTCAAGGTCAACATTACCTGCTTGTATTATGGGGTCCTGGAGCAGCCTGGC
ATACTCAACTTCAAAGGAAAAAAGATTGTATTTGGGAATTTAAGTACCTTTTTGTTCAGCGGAA
CTGCATACTAGAAAACTTAGAATTACATACAACACTGTGGTCATCCTGTGAATGCCTGTTTGAT
GATGATACAAGAGCAATTTCATTTAAAGCAAAATTTCAAAAAAATACATCCTCCTTTGTCAAGA
TATCAGACTTAGCAACTCACCTAACAGATAAGTATTCAGGAGTGGTTCTGATCACAGCCAGGGT
GTCAGAGCTGGTGTTCTGTGCTACAGCAGCTCAGAAGGTGGCTCTGAATGCTCGCAGCAGTCTG
CAGAGCATCTTCTCGTCTCTTCCCCGTATCACCTATGCTGGCTGTGCGCAGTGCGGCTCAGAAC
TGCAGACGGATGAGAACAGGATCTACAGACAGTGTCTGGGTTGCTTGCCGTTTGTTGGGAAGAA
AATGTTCTACAGACCGGCTTTAATGACCATAGTTGATGGAAGACATAATACTTATGTCCATGTT
GGGTCGAAGATGATGGAGCAGATTCTTTTCAACATTTCTCCAGATTGCCTCAGCAGAGTGATAG
TGCCTTCCTCAGAGGTCACCTACGGCATGGTCGCTGCGGACCTGCTGCACTCCTTGTTGGCAGT
CAGTGCAGAACCTTGCGTGCTGAAGATCCAGAGCCTTTTCGAGTTGGATGAAAACAGCTACCCC
CTGCAGCAGAACCTCTCCCTGTTAGATTTCTGCCCTGACTCGTTTAAGATGTGGAGACCAGGAC
TTGCTCTAAGGCCAGAGGAGGACACTGGAGTTGTTCCAAAGGAGTGATGAAACAATCTGTCTTT
TGAAGATTTATTTACTTTTACTATATGTACATAAGTGTTTTGCTTATGTATGTCTATGCATCCA
CAGAGGCCAGGAGAGGGTGCCAGATCCCCTGAGACTAGAGTAATGGATGCTTGTGAGCCGCCGT
GTAGATTTTAAGAAAGTGCTCTTAACTGCTGAGCCATCCAACCCAATGATCTACCTTTTGAAAT
AAATGAAATGACAGGGATTTTGCTTAGAGTTTTTAAAATAAGTAATTTATTAGCGAAATCTAAT
TGTAATAAATTATTTTTTAAGAAAA

hide sequence

RefSeq Acc Id:

XM_017600195 ⟹ XP_017455684

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	9,554,921 - 9,646,156 (-)	NCBI
mRatBN7.2	16	9,548,660 - 9,640,177 (-)	NCBI
Rnor_6.0	16	10,570,307 - 10,661,432 (-)	NCBI

Sequence:

show sequence

GTCCCTGATCCCACTGGCCTTGACTTTGGACAAGGTTTTAATTTGTTCTAGTCAACTATTCAGC
GATTTTGAGCAAAAAAGATTCTCTGGCCTTCAGCATGATATTGGCTTGATGTGGAAAGATTAAG
GTTTCTCTGGATCATTTGCTCCATGGGGCAGAAGAATGGTTGGGGAGATGATGAGCAAGGCAGG
TCTCTACCTGTGGGCCTCTCAGGTTTCTGAGTCCTTCTTTGCTGGTGGATTGGAGCAGGCTGTC
GACAGCCATCTTTGGTATTCAAGTAAGACATCTGCAGTGACACTGTGGACAGCGTCCAAAGCAC
CAAGATTCTAGGCTAAAGGGAAGAAGCCATTAGAGAAGAATACCCCGAGGTCCATGAGGACAAT
TTGTGATCAATGGTTACTCTTATGCCTTGACTTGCTATATGTTGTTCTTTATGAGGACCAGTGG
ATTGGTGAGACAGTACTCCAATCAACACTTACCAGTCAGTTACTGAATCTGGGAAGTTACTCAT
ATGTCCAGCCCGAAAAATATTCCAATATAATTGCCAATGTTATACTTCAGGATTTACTGACATA
TGTGTCTTCAAAACATTCCTATCTCAAAGATCTGCCTCAGAGGCAGCCTCAGAAAATCAACACC
GTAAAGTTTGTGGAATTGGAGCAGTTGCAGCCTGATACATTAGTCCATGCAGTGCTCAGAGTAG
TGAACATCACTGTATTGACAGAGGCATTATATAGTTACAGAGGACAAAAGCAAAGAAAGGTTGT
GTTAACGGTGGAACAGGCTCAAGGTCAACATTACCTGCTTGTATTATGGGGTCCTGGAGCAGCC
TGGCATACTCAACTTCAAAGGAAAAAAGATTGTATTTGGGAATTTAAGTACCTTTTTGTTCAGC
GGAACTGCATACTAGAAAACTTAGAATTACATACAACACTGTGGTCATCCTGTGAATGCCTGTT
TGATGATGATACAAGAGCAATTTCATTTAAAGCAAAATTTCAAAAAAATACATCCTCCTTTGTC
AAGATATCAGACTTAGCAACTCACCTAACAGATAAGTATTCAGGAGTGGTTCTGATCACAGCCA
GGGTGTCAGAGCTGGTGTTCTGTGCTACAGCAGCTCAGAAGGTGGCTCTGAATGCTCGCAGCAG
TCTGCAGAGCATCTTCTCGTCTCTTCCCCGTATCACCTATGCTGGCTGTGCGCAGTGCGGCTCA
GAACTGCAGACGGATGAGAACAGGATCTACAGACAGTGTCTGGGTTGCTTGCCGTTTGTTGGGA
AGAAAATGTTCTACAGACCGGCTTTAATGACCATAGTTGATGGAAGACATAATACTTATGTCCA
TGTTGGGTCGAAGATGATGGAGCAGATTCTTTTCAACATTTCTCCAGATTGCCTCAGCAGAGTG
ATAGTGCCTTCCTCAGAGGTCACCTACGGCATGGTCGCTGCGGACCTGCTGCACTCCTTGTTGG
CAGTCAGTGCAGAACCTTGCGTGCTGAAGATCCAGAGCCTTTTCGAGTTGGATGAAAACAGCTA
CCCCCTGCAGCAGAACCTCTCCCTGTTAGATTTCTGCCCTGACTCGTTTAAGATGTGGAGACCA
GGACTTGCTCTAAGGCCAGAGGAGGACACTGGAGTTGTTCCAAAGGAGTGATGAAACAATCTGT
CTTTTGAAGATTTATTTACTTTTACTATATGTACATAAGTGTTTTGCTTATGTATGTCTATGCA
TCCACAGAGGCCAGGAGAGGGTGCCAGATCCCCTGAGACTAGAGTAATGGATGCTTGTGAGCCG
CCGTGTAGATTTTAAGAAAGTGCTCTTAACTGCTGAGCCATCCAACCCAATGATCTACCTTTTG
AAATAAATGAAATGACAGGGATTTTGCTTAGAGTTTTTAAAATAAGTAATTTATTAGCGAAATC
TAATTGTAATAAATTATTTTTTAAGAAAA

hide sequence

RefSeq Acc Id:

XM_039094703 ⟹ XP_038950631

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	9,554,921 - 9,646,156 (-)	NCBI
mRatBN7.2	16	9,548,958 - 9,640,177 (-)	NCBI

RefSeq Acc Id:

XM_063275584 ⟹ XP_063131654

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	9,554,921 - 9,646,156 (-)	NCBI

RefSeq Acc Id:

XM_063275586 ⟹ XP_063131656

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	9,554,921 - 9,646,156 (-)	NCBI

RefSeq Acc Id:

XM_063275587 ⟹ XP_063131657

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	9,554,921 - 9,646,156 (-)	NCBI

RefSeq Acc Id:

XM_063275588 ⟹ XP_063131658

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	9,566,459 - 9,646,156 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001020199	(Get FASTA)	NCBI Sequence Viewer
	XP_008769357	(Get FASTA)	NCBI Sequence Viewer
	XP_008769358	(Get FASTA)	NCBI Sequence Viewer
	XP_008769359	(Get FASTA)	NCBI Sequence Viewer
	XP_017455683	(Get FASTA)	NCBI Sequence Viewer
	XP_017455684	(Get FASTA)	NCBI Sequence Viewer
	XP_038950631	(Get FASTA)	NCBI Sequence Viewer
	XP_063131654	(Get FASTA)	NCBI Sequence Viewer
	XP_063131656	(Get FASTA)	NCBI Sequence Viewer
	XP_063131657	(Get FASTA)	NCBI Sequence Viewer
	XP_063131658	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH89872	(Get FASTA)	NCBI Sequence Viewer
	EDL88883	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000069549
	ENSRNOP00000069549.2
	ENSRNOP00000073233
	ENSRNOP00000073233.2
	ENSRNOP00000080208.1

RefSeq Acc Id:

NP_001020199 ⟸ NM_001025028

- UniProtKB:

A6KFS6 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MNRGPQVHIFWGAPVAALKMTVSQETASLMSTANTWEKVQLFFKQRSLCLKAGDQEFKSLEDCQ
VPEGFGPPGLLSGHLLTTYVNRSAQAEEDFKHSESETQNVKSQKISLSDMTSVCRLTDRVQHLP
EEEKYQKLPYENKKIIDEQSKTQSDACVQNFQRDVLQLDRKCAAELDLGCSSGQKNTGPEAEEK
KPEPTGHRETQSQESFASDTQCEPQSEGAVRQASGQRISPDTEFLRVMTASQRAFLAQGNDKGQ
DYINKRTVNLEAEPTGSQGVRGTEGNFSEPGGDFEEGSESEQSQAYSLELFSPVCPESESSYGH
INPGKSLEENISSPELSSREENLPQNEAHVELCGSGVLCSQPSSSHRSTAKRSQCSKDNARHST
AHSEVHQVSKKARMDSNRREAAQAVPQKIMPEFKDSKKISLIKNCDSKSQKYNCLVMVLTPCHV
KEINVKSGPNSGSKVPLATIVVVDQSEIKKRVVLWRTAAFWALTVFLGDIILLTDVVLYEDQWI
GETVLQSTLTSQLLNLGSYSYVQPEKYSNIIANVILQDLLTYVSSKHSYLKDLPQRQPQKINTV
KFVELEQLQPDTLVHAVLRVVNITVLTEALYSYRGQKQRKVVLTVEQAQGQHYLLVLWGPGAAW
HTQLQRKKDCIWEFKYLFVQRNCILENLELHTTLWSSCECLFDDDTRAISFKAKFQKNTSSFVK
ISDLATHLTDKYSGVVLITARVSELVFCATAAQKVALNARSSLQSIFSSLPRITYAGCAQCGSE
LQTDENRIYRQCLGCLPFVGKKMFYRPALMTIVDGRHNTYVHVGSKMMEQILFNISPDCLSRVI
APSSEVTYGMVAADLLHSLLAVSAEPCVLKIQSLFELDENSYPLQQNLSLLDFCPDSFKMWRPG
LALRPEEDTGVVPKE

hide sequence

RefSeq Acc Id:	XP_008769358 ⟸ XM_008771136
- Peptide Label:	isoform X1
- UniProtKB:	D3ZH67 (UniProtKB/TrEMBL), A6KFS6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MNRGPQVHIFWGAPVAALKMTVSQETASLMSTANTWENVQLFFKQRSLCLKAGDQEFKSLEDCQ VPEGFGPPGLLSGHLLTTYVNRSAQAEEDFKHSESETQNVKSQKISLSDMTSVCRLTDRVQHLP EEEKYQKLPYENKKIIDEQSKTQSDACVQNFQRDVLQLDRKCAAELDLGCSSGQKNTGPEAEEK KPEPTGHRETQSQESFASDTQCEPQSEGAVRQASGQRISPDTEFLRVMTASQRAFLAQGNDKGQ DYINKRTVNLEAEPTGSQGVRGTEGNFSEPGGDFEEGSESEQSQAYSLELFSPVCPESESSYGH INPGKSLEENISSPELSSREENLPQNEAHVELCGSGVLCSQPSSSHRSTAKRSQCSKDNARHST AHSEVHQVSKKARMDSNRREAAQAVPQKIMPEFKDSKKISLIKNCDSKSQKYNCLVMVLTPCHV KEINVKSGPNSGSKVPLATIVVVDQSEIKKRVVLWRTAAFWALTVFLGDIILLTDVVLYEDQWI GETVLQSTLTSQLLNLGSYSYVQPEKYSNIIANVILQDLLTYVSSKHSYLKDLPQRQPQKINTV KFVELEQLQPDTLVHAVLRVVNITVLTEALYSYRGQKQRKVVLTVEQAQGQHYLLVLWGPGAAW HTQLQRKKDCIWEFKYLFVQRNCILENLELHTTLWSSCECLFDDDTRAISFKAKFQKNTSSFVK ISDLATHLTDKYSGVVLITARVSELVFCATAAQKVALNARSSLQSIFSSLPRITYAGCAQCGSE LQTDENRIYRQCLGCLPFVGKKMFYRPALMTIVDGRHNTYVHVGSKMMEQILFNISPDCLSRVI VPSSEVTYGMVAADLLHSLLAVSAEPCVLKIQSLFELDENSYPLQQNLSLLDFCPDSFKMWRPG LALRPEEDTGVVPKE hide sequence

RefSeq Acc Id:	XP_008769357 ⟸ XM_008771135
- Peptide Label:	isoform X1
- UniProtKB:	D3ZH67 (UniProtKB/TrEMBL), A6KFS6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MNRGPQVHIFWGAPVAALKMTVSQETASLMSTANTWENVQLFFKQRSLCLKAGDQEFKSLEDCQ VPEGFGPPGLLSGHLLTTYVNRSAQAEEDFKHSESETQNVKSQKISLSDMTSVCRLTDRVQHLP EEEKYQKLPYENKKIIDEQSKTQSDACVQNFQRDVLQLDRKCAAELDLGCSSGQKNTGPEAEEK KPEPTGHRETQSQESFASDTQCEPQSEGAVRQASGQRISPDTEFLRVMTASQRAFLAQGNDKGQ DYINKRTVNLEAEPTGSQGVRGTEGNFSEPGGDFEEGSESEQSQAYSLELFSPVCPESESSYGH INPGKSLEENISSPELSSREENLPQNEAHVELCGSGVLCSQPSSSHRSTAKRSQCSKDNARHST AHSEVHQVSKKARMDSNRREAAQAVPQKIMPEFKDSKKISLIKNCDSKSQKYNCLVMVLTPCHV KEINVKSGPNSGSKVPLATIVVVDQSEIKKRVVLWRTAAFWALTVFLGDIILLTDVVLYEDQWI GETVLQSTLTSQLLNLGSYSYVQPEKYSNIIANVILQDLLTYVSSKHSYLKDLPQRQPQKINTV KFVELEQLQPDTLVHAVLRVVNITVLTEALYSYRGQKQRKVVLTVEQAQGQHYLLVLWGPGAAW HTQLQRKKDCIWEFKYLFVQRNCILENLELHTTLWSSCECLFDDDTRAISFKAKFQKNTSSFVK ISDLATHLTDKYSGVVLITARVSELVFCATAAQKVALNARSSLQSIFSSLPRITYAGCAQCGSE LQTDENRIYRQCLGCLPFVGKKMFYRPALMTIVDGRHNTYVHVGSKMMEQILFNISPDCLSRVI VPSSEVTYGMVAADLLHSLLAVSAEPCVLKIQSLFELDENSYPLQQNLSLLDFCPDSFKMWRPG LALRPEEDTGVVPKE hide sequence

RefSeq Acc Id:	XP_008769359 ⟸ XM_008771137
- Peptide Label:	isoform X1
- UniProtKB:	D3ZH67 (UniProtKB/TrEMBL), A6KFS6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MNRGPQVHIFWGAPVAALKMTVSQETASLMSTANTWENVQLFFKQRSLCLKAGDQEFKSLEDCQ VPEGFGPPGLLSGHLLTTYVNRSAQAEEDFKHSESETQNVKSQKISLSDMTSVCRLTDRVQHLP EEEKYQKLPYENKKIIDEQSKTQSDACVQNFQRDVLQLDRKCAAELDLGCSSGQKNTGPEAEEK KPEPTGHRETQSQESFASDTQCEPQSEGAVRQASGQRISPDTEFLRVMTASQRAFLAQGNDKGQ DYINKRTVNLEAEPTGSQGVRGTEGNFSEPGGDFEEGSESEQSQAYSLELFSPVCPESESSYGH INPGKSLEENISSPELSSREENLPQNEAHVELCGSGVLCSQPSSSHRSTAKRSQCSKDNARHST AHSEVHQVSKKARMDSNRREAAQAVPQKIMPEFKDSKKISLIKNCDSKSQKYNCLVMVLTPCHV KEINVKSGPNSGSKVPLATIVVVDQSEIKKRVVLWRTAAFWALTVFLGDIILLTDVVLYEDQWI GETVLQSTLTSQLLNLGSYSYVQPEKYSNIIANVILQDLLTYVSSKHSYLKDLPQRQPQKINTV KFVELEQLQPDTLVHAVLRVVNITVLTEALYSYRGQKQRKVVLTVEQAQGQHYLLVLWGPGAAW HTQLQRKKDCIWEFKYLFVQRNCILENLELHTTLWSSCECLFDDDTRAISFKAKFQKNTSSFVK ISDLATHLTDKYSGVVLITARVSELVFCATAAQKVALNARSSLQSIFSSLPRITYAGCAQCGSE LQTDENRIYRQCLGCLPFVGKKMFYRPALMTIVDGRHNTYVHVGSKMMEQILFNISPDCLSRVI VPSSEVTYGMVAADLLHSLLAVSAEPCVLKIQSLFELDENSYPLQQNLSLLDFCPDSFKMWRPG LALRPEEDTGVVPKE hide sequence

RefSeq Acc Id:

XP_017455683 ⟸ XM_017600194

- Peptide Label:

isoform X5

- Sequence:

show sequence

MRTICDQWLLLCLDLLYVVLYEDQWIGETVLQSTLTSQLLNLGSYSYVQPEKYSNIIANVILQD
LLTYVSSKHSYLKDLPQRQPQKINTVKFVELEQLQPDTLVHAVLRVVNITVLTEALYSYRGQKQ
RKVVLTVEQAQGQHYLLVLWGPGAAWHTQLQRKKDCIWEFKYLFVQRNCILENLELHTTLWSSC
ECLFDDDTRAISFKAKFQKNTSSFVKISDLATHLTDKYSGVVLITARVSELVFCATAAQKVALN
ARSSLQSIFSSLPRITYAGCAQCGSELQTDENRIYRQCLGCLPFVGKKMFYRPALMTIVDGRHN
TYVHVGSKMMEQILFNISPDCLSRVIVPSSEVTYGMVAADLLHSLLAVSAEPCVLKIQSLFELD
ENSYPLQQNLSLLDFCPDSFKMWRPGLALRPEEDTGVVPKE

hide sequence

RefSeq Acc Id:

XP_017455684 ⟸ XM_017600195

- Peptide Label:

isoform X5

- Sequence:

show sequence

MRTICDQWLLLCLDLLYVVLYEDQWIGETVLQSTLTSQLLNLGSYSYVQPEKYSNIIANVILQD
LLTYVSSKHSYLKDLPQRQPQKINTVKFVELEQLQPDTLVHAVLRVVNITVLTEALYSYRGQKQ
RKVVLTVEQAQGQHYLLVLWGPGAAWHTQLQRKKDCIWEFKYLFVQRNCILENLELHTTLWSSC
ECLFDDDTRAISFKAKFQKNTSSFVKISDLATHLTDKYSGVVLITARVSELVFCATAAQKVALN
ARSSLQSIFSSLPRITYAGCAQCGSELQTDENRIYRQCLGCLPFVGKKMFYRPALMTIVDGRHN
TYVHVGSKMMEQILFNISPDCLSRVIVPSSEVTYGMVAADLLHSLLAVSAEPCVLKIQSLFELD
ENSYPLQQNLSLLDFCPDSFKMWRPGLALRPEEDTGVVPKE

hide sequence

Ensembl Acc Id:

ENSRNOP00000069549 ⟸ ENSRNOT00000087737

Ensembl Acc Id:

ENSRNOP00000073233 ⟸ ENSRNOT00000085012

RefSeq Acc Id:	XP_038950631 ⟸ XM_039094703
- Peptide Label:	isoform X1
- UniProtKB:	D3ZH67 (UniProtKB/TrEMBL), A6KFS6 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000080208 ⟸ ENSRNOT00000100122

RefSeq Acc Id:	XP_063131654 ⟸ XM_063275584
- Peptide Label:	isoform X1
- UniProtKB:	D3ZH67 (UniProtKB/TrEMBL), A6KFS6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063131656 ⟸ XM_063275586
- Peptide Label:	isoform X2
- UniProtKB:	A6KFS6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063131657 ⟸ XM_063275587
- Peptide Label:	isoform X3
- UniProtKB:	A6KFS6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063131658 ⟸ XM_063275588
- Peptide Label:	isoform X4

Protein Domains

Shieldin complex subunit 2 C-terminal Shieldin complex subunit 2 first OB fold Shieldin complex subunit 2 second OB fold

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZH67-F1-model_v2	AlphaFold	D3ZH67	1-911	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13699955

Promoter ID:

EPDNEW_R10479

Type:

initiation region

Name:

Fam35a_1

Description:

family with sequence similarity 35, member A

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	16	10,661,539 - 10,661,599	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1565067	AgrOrtholog
BioCyc Gene	G2FUF-12068	BioCyc
Ensembl Genes	ENSRNOG00000059057	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000085012	ENTREZGENE
	ENSRNOT00000085012.2	UniProtKB/TrEMBL
	ENSRNOT00000087737	ENTREZGENE
	ENSRNOT00000087737.2	UniProtKB/TrEMBL
	ENSRNOT00000100122.1	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7325236	IMAGE-MGC_LOAD
InterPro	FAM35A	UniProtKB/TrEMBL
	FAM35A_C	UniProtKB/TrEMBL
	SHLD2_OB1	UniProtKB/TrEMBL
	SHLD2_OB2	UniProtKB/TrEMBL
KEGG Report	rno:364514	UniProtKB/TrEMBL
MGC_CLONE	MGC:109007	IMAGE-MGC_LOAD
NCBI Gene	364514	ENTREZGENE
PANTHER	PTHR14495	UniProtKB/TrEMBL
	SHIELDIN COMPLEX SUBUNIT 2	UniProtKB/TrEMBL
Pfam	FAM35_C	UniProtKB/TrEMBL
	SHLD2_OB1	UniProtKB/TrEMBL
	SHLD2_OB2	UniProtKB/TrEMBL
PhenoGen	Shld2	PhenoGen
RatGTEx	ENSRNOG00000059057	RatGTEx
UniProt	A0A8I5ZP43_RAT	UniProtKB/TrEMBL
	A6KFS6	ENTREZGENE, UniProtKB/TrEMBL
	D3ZH67	ENTREZGENE, UniProtKB/TrEMBL
	Q5FVM8_RAT	UniProtKB/TrEMBL
UniProt Secondary	A0A0G2JVN0	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2018-05-07	Shld2	shieldin complex subunit 2	Fam35a	family with sequence similarity 35, member A	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-05	Fam35a	family with sequence similarity 35, member A	LOC364514	hypothetical protein LOC364514	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-02-09	LOC364514	hypothetical protein LOC364514			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message

Imported Disease Annotations - ClinVar