 Gene-Chemical Interaction Annotations | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Gene Ontology Annotations |
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Analyze GeneStrainQTL List |
 Gene Annotator (Functional Annotation) unavailable |
 Gene Annotator (Annotation Distribution) unavailable |
 Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable |
Gene Annotator (Functional Annotation) |
Gene Annotator (Annotation Distribution) |
Variant Visualizer (Genomic Variants) |
 InterViewer (Protein-Protein Interactions) unavailable |
 Gviewer (Genome Viewer) unavailable |
 Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable |
InterViewer (Protein-Protein Interactions) |
GViewer (Genome Viewer) |
Variant Visualizer (Damaging Variants) |
 Gene Annotator (Annotation Comparison) unavailable |
 OLGA (Gene List Generator) unavailable |
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Gene Annotator (Annotation Comparison) |
OLGA (Gene List Generator) |
Excel (Download) |
 MOET (Multi-Ontology Enrichement) unavailable |
 GOLF (Gene-Ortholog Location Finder) unavailable |
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MOET (Multi-Ontology Enrichement) |
GOLF (Gene-Ortholog Location Finder) |
Gene Ontology AnnotationsDisease AnnotationsGene-Chemical Interaction Annotations
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Gene Ontology AnnotationsBiological Process
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Cellular Component
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Molecular Function
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References - curated| 1. | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
| 2. | RGD automated import pipeline for gene-chemical interactions |
References - uncuratedGenomics
Comparative Map Data| Stab1 (Rattus norvegicus - Norway rat) |
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| STAB1 (Homo sapiens - human) |
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| Stab1 (Mus musculus - house mouse) |
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| Stab1 (Chinchilla lanigera - long-tailed chinchilla) |
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| STAB1 (Pan paniscus - bonobo/pygmy chimpanzee) |
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| STAB1 (Canis lupus familiaris - dog) |
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| Stab1 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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| STAB1 (Sus scrofa - pig) |
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| STAB1 (Chlorocebus sabaeus - African green monkey) |
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| Stab1 (Heterocephalus glaber - naked mole-rat) |
No map positions available. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
QTLs in Region (Rnor_6.0)| The following QTLs overlap with this region. |  | Full Report | | CSV | | TAB | | Printer | | Gviewer |
miRNA Target Status
Predicted Target Of
| The detailed report is available here: | | Full Report | | CSV | | TAB | | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
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Expression
RNA-SEQ ExpressionHigh: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM
| alimentary part of gastrointestinal system | circulatory system | endocrine system | exocrine system | hemolymphoid system | hepatobiliary system | integumental system | musculoskeletal system | nervous system | renal system | reproductive system | respiratory system | appendage | |
| High | |||||||||||||
| Medium | 23 | 5 | 4 | 12 | 4 | 8 | 16 | 29 | 1 | ||||
| Low | 3 | 20 | 52 | 37 | 7 | 37 | 8 | 11 | 66 | 19 | 12 | 10 | 8 |
| Below cutoff |
View RNA-SEQ Expression Data
Sequence
Nucleotide Sequences| RefSeq Transcripts | XM_006222122 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| XM_006222123 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_006222125 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_008771053 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_008771054 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_008771055 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_214279 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| GenBank Nucleotide | AAHX01086453 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| AAHX01086454 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AC095672 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| CH474046 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| FQ233524 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
Reference Sequences
| RefSeq Acc Id: | ENSRNOT00000025394 ⟹ ENSRNOP00000025394 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| RefSeq Acc Id: | XM_006222122 ⟹ XP_006222184 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| Sequence: |
TGCTCACCCACCCTGTCCTTCCCCTTTCCTCATGCCTGCCTCTCGGAGCTCACGAACTTCCCAChide sequence |
| RefSeq Acc Id: | XM_006222123 ⟹ XP_006222185 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| Sequence: |
CTGCTCACCCACCCTGTCCTTCCCCTTTCCTCATGCCTGCCTCTCGGAGCTCACGAACTTCCCAhide sequence |
| RefSeq Acc Id: | XM_006222125 ⟹ XP_006222187 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| Sequence: |
TGCTCACCCACCCTGTCCTTCCCCTTTCCTCATGCCTGCCTCTCGGAGCTCACGAACTTCCCAChide sequence |
| RefSeq Acc Id: | XM_008771053 ⟹ XP_008769275 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| Sequence: |
CACCCTGTCCTTCCCCTTTCCTCATGCCTGCCTCTCGGAGCTCACGAACTTCCCACTGTTACAAhide sequence |
| RefSeq Acc Id: | XM_008771054 ⟹ XP_008769276 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| Sequence: |
CACCCTGTCCTTCCCCTTTCCTCATGCCTGCCTCTCGGAGCTCACGAACTTCCCACTGTTACAAhide sequence |
| RefSeq Acc Id: | XM_008771055 ⟹ XP_008769277 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| Sequence: |
CACCCTGTCCTTCCCCTTTCCTCATGCCTGCCTCTCGGAGCTCACGAACTTCCCACTGTTACAAhide sequence |
Protein Sequences| Protein RefSeqs | XP_006222184 | (Get FASTA) | NCBI Sequence Viewer |
| XP_006222185 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_006222187 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_008769275 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_008769276 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_008769277 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_214279 | (Get FASTA) | NCBI Sequence Viewer | |
| GenBank Protein | EDL88963 | (Get FASTA) | NCBI Sequence Viewer |
Reference Sequences
| RefSeq Acc Id: | XP_006222184 ⟸ XM_006222122 |
| - Peptide Label: | isoform X1 |
| - Sequence: |
MAEPRILLLLCILVLCLAGSGFIRGQTVRSKRCDIHTKFITHTPCTACAAIRRRLCPSGWSRNFhide sequence |
| RefSeq Acc Id: | XP_006222185 ⟸ XM_006222123 |
| - Peptide Label: | isoform X2 |
| - Sequence: |
MAEPRILLLLCILVLCLAGSGFIRGQTVRSKRCDIHTKFITHTPCTACAAIRRRLCPSGWSRNFhide sequence |
| RefSeq Acc Id: | XP_006222187 ⟸ XM_006222125 |
| - Peptide Label: | isoform X3 |
| - Sequence: |
MAEPRILLLLCILVLCLAGSGFIRGQTVRSKRCDIHTKFITHTPCTACAAIRRRLCPSGWSRNFhide sequence |
| RefSeq Acc Id: | XP_008769277 ⟸ XM_008771055 |
| - Peptide Label: | isoform X3 |
| - Sequence: |
MAEPRILLLLCILVLCLAGSGFIRGQTVRSKRCDIHTKFITHTPCTACAAIRRRLCPSGWSRNFhide sequence |
| RefSeq Acc Id: | XP_008769276 ⟸ XM_008771054 |
| - Peptide Label: | isoform X2 |
| - Sequence: |
MAEPRILLLLCILVLCLAGSGFIRGQTVRSKRCDIHTKFITHTPCTACAAIRRRLCPSGWSRNFhide sequence |
| RefSeq Acc Id: | XP_008769275 ⟸ XM_008771053 |
| - Peptide Label: | isoform X1 |
| - Sequence: |
MAEPRILLLLCILVLCLAGSGFIRGQTVRSKRCDIHTKFITHTPCTACAAIRRRLCPSGWSRNFhide sequence |
| RefSeq Acc Id: | ENSRNOP00000025394 ⟸ ENSRNOT00000025394 |
Protein Domains
EGF-like FAS1 Link
TranscriptomePromoters| RGD ID: | 13699925 | ||||||||
| Promoter ID: | EPDNEW_R10448 | ||||||||
| Type: | single initiation site | ||||||||
| Name: | Stab1_1 | ||||||||
| Description: | stabilin 1 | ||||||||
| SO ACC ID: | SO:0000170 | ||||||||
| Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
| Experiment Methods: | Single-end sequencing. | ||||||||
| Position: |
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Strain Variation
Strain Sequence Variants (Rnor 6.0)
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Damaging VariantsAssembly: Rnor_6.0
| Chromosome | Start Pos | End Pos | Reference Nucleotide | Variant Nucleotide | Variant Type | Strain |
| 16 | 7222463 | 7222464 | G | A | snv | SR/JrHsd (MCW), SHRSP/Gcrc (RGD), F344/NCrl (RGD), F344/NRrrc (MCW), LN/MavRrrc (RGD), WAG/Rij (RGD), SR/JrHsd (RGD), LH/MavRrrc (RGD) |
Additional Information
External Database Links| Database | Acc Id | Source(s) |
| AGR Gene | RGD:2324745 | AgrOrtholog |
| Ensembl Genes | ENSRNOG00000018434 | Ensembl, ENTREZGENE, UniProtKB/TrEMBL |
| Ensembl Protein | ENSRNOP00000025394 | ENTREZGENE, UniProtKB/TrEMBL |
| Ensembl Transcript | ENSRNOT00000025394 | ENTREZGENE, UniProtKB/TrEMBL |
| Gene3D-CATH | 2.30.180.10 | UniProtKB/TrEMBL |
| 3.10.100.10 | UniProtKB/TrEMBL | |
| InterPro | C-type_lectin-like | UniProtKB/TrEMBL |
| C-type_lectin_fold | UniProtKB/TrEMBL | |
| EGF-like_Ca-bd_dom | UniProtKB/TrEMBL | |
| EGF-like_reg_CS | UniProtKB/TrEMBL | |
| EGF_3 | UniProtKB/TrEMBL | |
| EGF_dom_MSP1-like | UniProtKB/TrEMBL | |
| EGF_laminin | UniProtKB/TrEMBL | |
| FAS1_dom_sf | UniProtKB/TrEMBL | |
| FAS1_domain | UniProtKB/TrEMBL | |
| Link | UniProtKB/TrEMBL | |
| NCBI Gene | 100363145 | ENTREZGENE |
| Pfam | EGF_3 | UniProtKB/TrEMBL |
| Fasciclin | UniProtKB/TrEMBL | |
| PhenoGen | Stab1 | PhenoGen |
| PROSITE | EGF_1 | UniProtKB/TrEMBL |
| EGF_2 | UniProtKB/TrEMBL | |
| EGF_3 | UniProtKB/TrEMBL | |
| FAS1 | UniProtKB/TrEMBL | |
| LINK_2 | UniProtKB/TrEMBL | |
| SMART | EGF | UniProtKB/TrEMBL |
| EGF_CA | UniProtKB/TrEMBL | |
| EGF_Lam | UniProtKB/TrEMBL | |
| FAS1 | UniProtKB/TrEMBL | |
| Superfamily-SCOP | BIgH3_FAS1 | UniProtKB/TrEMBL |
| C-type_lectin_fold | UniProtKB/TrEMBL | |
| UniGene | Rn.144136 | ENTREZGENE |
| UniProt | D3ZWH1_RAT | UniProtKB/TrEMBL |
Nomenclature History| Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
|---|---|---|---|---|---|---|---|
| 2012-08-30 | LOC100363145 | stabilin 1 | Stab1 | stabilin 1 | Data Merged | 737654 | APPROVED |
| 2012-08-30 | Stab1 | stabilin 1 | LOC100363145 | stabilin 1 | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
| 2010-05-12 | LOC100363145 | stabilin 1 | Symbol and Name status set to provisional | 70820 | PROVISIONAL | ||
| 2008-04-30 | Stab1 | stabilin 1 | Stab1_predicted | stabilin 1 (predicted) | 'predicted' is removed | 2292626 | APPROVED |
| 2005-01-12 | Stab1_predicted | stabilin 1 (predicted) | Symbol and Name status set to approved | 70820 | APPROVED |
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| More on Stab1 | |
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Alliance Gene |
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NCBI Gene |
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Ensembl Gene |
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JBrowse: rn5 rn6 |
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NCBI Genome Data Viewer |
| RGD Object Information | |
| RGD ID: | 2324745 |
| Created: | 2010-05-12 |
| Species: | Rattus norvegicus |
| Last Modified: | 2020-08-20 |
| Status: | ACTIVE |
