Stab1 (stabilin 1) - Rat Genome Database

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Gene: Stab1 (stabilin 1) Rattus norvegicus
Analyze
Symbol: Stab1
Name: stabilin 1
RGD ID: 2324745
Description: Predicted to enable low-density lipoprotein particle binding activity; low-density lipoprotein particle receptor activity; and scavenger receptor activity. Predicted to be involved in cell-cell signaling; defense response to bacterium; and negative regulation of angiogenesis. Predicted to be located in plasma membrane. Orthologous to human STAB1 (stabilin 1); INTERACTS WITH 17beta-estradiol; 17beta-estradiol 3-benzoate; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC100363145; LOC290559; stabilin-1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2166,330,435 - 6,360,934 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl166,330,444 - 6,360,923 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0167,220,434 - 7,250,934 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl167,222,067 - 7,250,924 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0167,149,003 - 7,179,503 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4166,567,583 - 6,597,972 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1166,567,700 - 6,598,257 (-)NCBI
Celera168,827,983 - 8,858,792 (+)NCBICelera
Cytogenetic Map16p16NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (EXP,ISO)
17beta-estradiol 3-benzoate  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2-butoxyethanol  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
3,4-methylenedioxymethamphetamine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (ISO)
amphetamine  (EXP)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
benzo[b]fluoranthene  (ISO)
benzo[e]pyrene  (ISO)
bisphenol A  (ISO)
bisphenol F  (ISO)
calcitriol  (ISO)
carbon nanotube  (ISO)
cobalt dichloride  (ISO)
Cuprizon  (EXP)
diarsenic trioxide  (ISO)
dimethylselenide  (ISO)
dioxygen  (ISO)
diuron  (EXP)
doxorubicin  (ISO)
elemental selenium  (ISO)
endosulfan  (EXP)
epoxiconazole  (ISO)
ethanol  (ISO)
folic acid  (ISO)
hydrogen peroxide  (ISO)
lipopolysaccharide  (ISO)
methapyrilene  (ISO)
methotrexate  (ISO)
N,N-diethyl-m-toluamide  (EXP)
N-acetyl-1,4-benzoquinone imine  (ISO)
oxaliplatin  (EXP)
paracetamol  (ISO)
perfluorohexanesulfonic acid  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
permethrin  (EXP)
phenobarbital  (ISO)
phosgene  (ISO)
reactive oxygen species  (ISO)
selenium atom  (ISO)
sodium dichromate  (ISO)
sulforaphane  (ISO)
tamoxifen  (ISO)
testosterone  (EXP)
tetrachloromethane  (ISO)
topotecan  (EXP)
trichloroethene  (EXP)
triptonide  (ISO)
vancomycin  (ISO)
vinclozolin  (EXP)
vitamin E  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12077138   PMID:15572036  


Genomics

Comparative Map Data
Stab1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2166,330,435 - 6,360,934 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl166,330,444 - 6,360,923 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0167,220,434 - 7,250,934 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl167,222,067 - 7,250,924 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0167,149,003 - 7,179,503 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4166,567,583 - 6,597,972 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1166,567,700 - 6,598,257 (-)NCBI
Celera168,827,983 - 8,858,792 (+)NCBICelera
Cytogenetic Map16p16NCBI
STAB1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38352,495,338 - 52,524,495 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl352,495,338 - 52,524,495 (+)EnsemblGRCh38hg38GRCh38
GRCh37352,529,354 - 52,558,511 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36352,504,396 - 52,533,551 (+)NCBINCBI36Build 36hg18NCBI36
Build 34352,504,439 - 52,533,540NCBI
Celera352,508,595 - 52,537,970 (+)NCBICelera
Cytogenetic Map3p21.1NCBI
HuRef352,591,899 - 52,621,386 (+)NCBIHuRef
CHM1_1352,481,711 - 52,510,878 (+)NCBICHM1_1
T2T-CHM13v2.0352,528,236 - 52,557,403 (+)NCBIT2T-CHM13v2.0
Stab1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391430,860,974 - 30,890,616 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1430,860,970 - 30,890,598 (-)EnsemblGRCm39 Ensembl
GRCm381431,139,017 - 31,168,651 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1431,139,013 - 31,168,641 (-)EnsemblGRCm38mm10GRCm38
MGSCv371431,952,203 - 31,981,827 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361429,968,026 - 29,997,581 (-)NCBIMGSCv36mm8
Celera1427,397,577 - 27,427,203 (-)NCBICelera
Cytogenetic Map14BNCBI
Stab1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554302,491,974 - 2,518,063 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554302,491,960 - 2,518,063 (+)NCBIChiLan1.0ChiLan1.0
STAB1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1353,665,387 - 53,694,138 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl353,665,386 - 53,694,139 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0352,437,378 - 52,466,143 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
STAB1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12037,249,744 - 37,276,642 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2037,249,746 - 37,276,535 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2037,231,571 - 37,258,465 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02037,599,193 - 37,626,089 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2037,599,204 - 37,626,083 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12036,963,745 - 36,990,590 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02037,372,373 - 37,399,226 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02037,650,617 - 37,677,514 (-)NCBIUU_Cfam_GSD_1.0
Stab1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118170,195,365 - 170,224,683 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364733,334,032 - 3,363,117 (+)EnsemblSpeTri2.0
SpeTri2.0NW_0049364733,333,988 - 3,363,256 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STAB1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1334,636,083 - 34,659,219 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11334,630,448 - 34,659,371 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21337,845,303 - 37,872,110 (+)NCBISscrofa10.2Sscrofa10.2susScr3
STAB1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12213,862,105 - 13,892,199 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2213,870,551 - 13,896,970 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041153,007,867 - 153,037,207 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Stab1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248224,684,103 - 4,710,964 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248224,683,955 - 4,711,161 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Stab1
98 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:142
Count of miRNA genes:116
Interacting mature miRNAs:125
Transcripts:ENSRNOT00000025394
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357403Slep4Serum leptin concentration QTL 43.91blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1619639137Rat
1600369Hcas8Hepatocarcinoma susceptibility QTL 8liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)16122477621Rat
631830Alc7Alcohol consumption QTL 72.9consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16126727669Rat
634355Rends4Renal damage susceptibility QTL 40.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)16126727669Rat
1582235Insul8Insulin level QTL 83.30.0063blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)16126727669Rat
9590151Scort8Serum corticosterone level QTL 88.450.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)16130836262Rat
2302380Slep6Serum leptin concentration QTL 63.36blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)16132139025Rat
2307172Activ4Activity QTL 43.710.00023locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)16133418960Rat
1354584Despr6Despair related QTL 63.10.0067locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16139533930Rat
2303566Bw90Body weight QTL 902body mass (VT:0001259)body weight (CMO:0000012)16139533930Rat
631561Hcuc2Hepatic copper content QTL 22.8liver copper amount (VT:0003065)liver total copper weight (CMO:0001507)16139533949Rat
6903319Bw114Body weight QTL 1142.70.0037body mass (VT:0001259)body weight (CMO:0000012)16143534949Rat
7411664Foco30Food consumption QTL 30110.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)16144588133Rat
1354625Despr7Despair related QTL 73.160.016locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16144977551Rat
1600378Arunc4Aerobic running capacity QTL 40.03exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)1638024580345693Rat
2293343Glom16Glomerulus QTL 167.4kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1683223646053497Rat
2312660Bw95Body weight QTL 950.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)1683223659492508Rat
2312663Slep9Serum leptin concentration QTL 90.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1683223659492508Rat
2312666Insul16Insulin level QTL 160.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1683223659492508Rat
2312669Stl23Serum triglyceride level QTL 230.01blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1683223659492508Rat
2301406Kidm39Kidney mass QTL 390.002kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)16285170915884239Rat
1300133Rf24Renal function QTL 243.64blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)16338015021361552Rat
2306902Bp339Blood pressure QTL 3390.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16338015043025077Rat
737825Alc13Alcohol consumption QTL 134.5consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16422760916039848Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)16422760943025077Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16422760943025077Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)16422760943025077Rat
737819Hcas4Hepatocarcinoma susceptibility QTL 44.43liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)16422760946975965Rat
61405Niddm6Non-insulin dependent diabetes mellitus QTL 63.660.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)16422760948972724Rat
61338Bp23Blood pressure QTL 234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16422760949227609Rat
737826Alc11Alcohol consumption QTL 113.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16422760960252231Rat
61372Bp40Blood pressure QTL 402.2blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)16422773017696785Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 23 5 4 12 4 8 16 29 1
Low 3 20 52 37 7 37 8 11 66 19 12 10 8
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_006222122 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006222123 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006222125 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008771053 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008771054 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008771055 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095096 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095097 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095098 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095100 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_214279 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005494942 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005494943 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC095672 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474046 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ233524 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000025394   ⟹   ENSRNOP00000025394
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl166,330,444 - 6,360,923 (-)Ensembl
Rnor_6.0 Ensembl167,222,067 - 7,250,924 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000113467   ⟹   ENSRNOP00000077821
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl166,330,444 - 6,360,923 (-)Ensembl
RefSeq Acc Id: XM_008771053   ⟹   XP_008769275
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2166,330,435 - 6,360,933 (-)NCBI
Rnor_6.0167,220,434 - 7,250,934 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008771054   ⟹   XP_008769276
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2166,330,435 - 6,360,934 (-)NCBI
Rnor_6.0167,220,434 - 7,250,934 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008771055   ⟹   XP_008769277
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2166,330,435 - 6,360,933 (-)NCBI
Rnor_6.0167,220,434 - 7,250,934 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039095096   ⟹   XP_038951024
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2166,330,435 - 6,360,934 (-)NCBI
RefSeq Acc Id: XM_039095097   ⟹   XP_038951025
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2166,330,435 - 6,360,933 (-)NCBI
RefSeq Acc Id: XM_039095098   ⟹   XP_038951026
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2166,331,569 - 6,360,934 (-)NCBI
RefSeq Acc Id: XM_039095100   ⟹   XP_038951028
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2166,338,470 - 6,360,934 (-)NCBI
RefSeq Acc Id: XR_005494942
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2166,331,785 - 6,360,934 (-)NCBI
RefSeq Acc Id: XR_005494943
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2166,333,256 - 6,360,934 (-)NCBI
Reference Sequences
RefSeq Acc Id: XP_008769277   ⟸   XM_008771055
- Peptide Label: isoform X4
- UniProtKB: D3ZWH1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008769276   ⟸   XM_008771054
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_008769275   ⟸   XM_008771053
- Peptide Label: isoform X1
- UniProtKB: A0A8I5Y895 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000025394   ⟸   ENSRNOT00000025394
RefSeq Acc Id: XP_038951024   ⟸   XM_039095096
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038951025   ⟸   XM_039095097
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038951026   ⟸   XM_039095098
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038951028   ⟸   XM_039095100
- Peptide Label: isoform X7
RefSeq Acc Id: ENSRNOP00000077821   ⟸   ENSRNOT00000113467
Protein Domains
EGF-like   FAS1   Link

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZWH1-F1-model_v2 AlphaFold D3ZWH1 1-2252 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699925
Promoter ID:EPDNEW_R10448
Type:single initiation site
Name:Stab1_1
Description:stabilin 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0167,250,922 - 7,250,982EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2324745 AgrOrtholog
BioCyc Gene G2FUF-12160 BioCyc
Ensembl Genes ENSRNOG00000018434 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000025394 ENTREZGENE
  ENSRNOP00000025394.6 UniProtKB/TrEMBL
  ENSRNOP00000077821 ENTREZGENE
  ENSRNOP00000077821.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000025394 ENTREZGENE
  ENSRNOT00000025394.8 UniProtKB/TrEMBL
  ENSRNOT00000113467 ENTREZGENE
  ENSRNOT00000113467.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.180.10 UniProtKB/TrEMBL
  3.10.100.10 UniProtKB/TrEMBL
InterPro C-type_lectin-like UniProtKB/TrEMBL
  C-type_lectin_fold UniProtKB/TrEMBL
  EGF-like_Ca-bd_dom UniProtKB/TrEMBL
  EGF_3 UniProtKB/TrEMBL
  EGF_dom_MSP1-like UniProtKB/TrEMBL
  EGF_laminin UniProtKB/TrEMBL
  FAS1_dom_sf UniProtKB/TrEMBL
  FAS1_domain UniProtKB/TrEMBL
  Link UniProtKB/TrEMBL
NCBI Gene 100363145 ENTREZGENE
Pfam EGF_3 UniProtKB/TrEMBL
  Fasciclin UniProtKB/TrEMBL
  Xlink UniProtKB/TrEMBL
PhenoGen Stab1 PhenoGen
PROSITE EGF_1 UniProtKB/TrEMBL
  EGF_2 UniProtKB/TrEMBL
  EGF_3 UniProtKB/TrEMBL
  FAS1 UniProtKB/TrEMBL
  LINK_1 UniProtKB/TrEMBL
  LINK_2 UniProtKB/TrEMBL
SMART EGF UniProtKB/TrEMBL
  EGF_CA UniProtKB/TrEMBL
  EGF_Lam UniProtKB/TrEMBL
  FAS1 UniProtKB/TrEMBL
  LINK UniProtKB/TrEMBL
Superfamily-SCOP BIgH3_FAS1 UniProtKB/TrEMBL
  C-type_lectin_fold UniProtKB/TrEMBL
UniProt A0A8I5Y895 ENTREZGENE, UniProtKB/TrEMBL
  D3ZWH1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-08-30 LOC100363145  stabilin 1  Stab1  stabilin 1  Data Merged 737654 APPROVED
2012-08-30 Stab1  stabilin 1  LOC100363145  stabilin 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-05-12 LOC100363145  stabilin 1      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-04-30 Stab1  stabilin 1   Stab1_predicted  stabilin 1 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Stab1_predicted  stabilin 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED