Ankrd28 (ankyrin repeat domain 28)

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Gene: Ankrd28 (ankyrin repeat domain 28) Rattus norvegicus

Analyze

Symbol:

Ankrd28

Name:

ankyrin repeat domain 28

RGD ID:

1559931

Description:

Orthologous to human ANKRD28 (ankyrin repeat domain 28); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; cadmium dichloride.

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

LOC102549679; LOC306264; RGD1559931; serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A; serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A-like; similar to Ankyrin repeat domain protein 28

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ANKRD28 (ankyrin repeat domain 28)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Ankrd28 (ankyrin repeat domain 28)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ankrd28 (ankyrin repeat domain 28)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ANKRD28 (ankyrin repeat domain 28)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ANKRD28 (ankyrin repeat domain 28)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ankrd28 (ankyrin repeat domain 28)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ANKRD28 (ankyrin repeat domain 28)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ANKRD28 (ankyrin repeat domain 28)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ankrd28 (ankyrin repeat domain 28)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	ANKRD28 (ankyrin repeat domain 28)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Ankrd28 (ankyrin repeat domain 28)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	ankrd28b (ankyrin repeat domain 28b)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	16	6,918,487 - 7,050,244 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	6,914,336 - 7,050,249 (-)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	16	7,816,876 - 7,879,023 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	7,818,667 - 7,928,518 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	16	7,737,522 - 7,800,288 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	16	7,166,559 - 7,248,739 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	16	8,148,113 - 8,278,476 (+)	NCBI		Celera
Cytogenetic Map	16	p16	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

3p deletion syndrome (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-demecolcine (ISO)

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

3,3',4,4'-tetrachlorobiphenyl (ISO)

4-hydroxyphenyl retinamide (ISO)

acrylamide (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP,ISO)

cadmium dichloride (EXP)

carbamazepine (ISO)

carbon nanotube (ISO)

clofibrate (ISO)

cyclosporin A (ISO)

dibutyl phthalate (EXP)

dioxygen (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

entinostat (ISO)

ethanol (ISO)

etoposide (ISO)

fenthion (ISO)

finasteride (EXP)

flutamide (EXP)

folic acid (ISO)

formaldehyde (ISO)

fulvestrant (ISO)

gentamycin (EXP)

irinotecan (ISO)

ivermectin (ISO)

manganese(II) chloride (EXP)

melphalan (ISO)

methidathion (ISO)

methylmercury chloride (ISO)

N-methyl-4-phenylpyridinium (EXP,ISO)

p-toluidine (EXP)

paracetamol (ISO)

raloxifene (ISO)

SB 431542 (ISO)

sulindac (EXP)

tamoxifen (ISO)

tetrachloromethane (ISO)

thioacetamide (EXP)

trichostatin A (ISO)

tungsten (ISO)

ursodeoxycholic acid (ISO)

valproic acid (EXP,ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data

Ankrd28
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	16	6,918,487 - 7,050,244 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	6,914,336 - 7,050,249 (-)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	16	7,816,876 - 7,879,023 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	7,818,667 - 7,928,518 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	16	7,737,522 - 7,800,288 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	16	7,166,559 - 7,248,739 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	16	8,148,113 - 8,278,476 (+)	NCBI		Celera
Cytogenetic Map	16	p16	NCBI

ANKRD28
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	15,667,236 - 15,859,814 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	3	15,667,236 - 15,859,771 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	3	15,708,743 - 15,901,321 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	15,683,747 - 15,876,057 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	3	15,700,252 - 15,813,337	NCBI
Celera	3	15,646,877 - 15,840,010 (-)	NCBI		Celera
Cytogenetic Map	3	p25.1	NCBI
HuRef	3	15,643,973 - 15,836,592 (-)	NCBI		HuRef
CHM1_1	3	15,659,447 - 15,852,157 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	3	15,669,546 - 15,862,982 (-)	NCBI		T2T-CHM13v2.0

Ankrd28
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	14	31,418,687 - 31,552,372 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	14	31,420,725 - 31,552,608 (-)	Ensembl		GRCm39 Ensembl
GRCm38	14	31,698,768 - 31,830,567 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	14	31,698,768 - 31,830,651 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	14	32,513,201 - 32,643,601 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	14	30,529,024 - 30,659,424 (-)	NCBI		MGSCv36	mm8
Celera	14	27,958,335 - 28,088,802 (-)	NCBI		Celera
Cytogenetic Map	14	B	NCBI

Ankrd28
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955430	8,014,583 - 8,197,434 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955430	8,014,631 - 8,197,434 (-)	NCBI	ChiLan1.0	ChiLan1.0

ANKRD28
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	3	15,928,978 - 16,122,608 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	15,932,020 - 16,057,647 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	3	15,591,890 - 15,785,997 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3

ANKRD28
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	23	26,824,219 - 27,012,601 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	23	26,823,479 - 27,010,908 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	23	26,799,385 - 26,988,667 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	23	27,326,011 - 27,516,914 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	23	27,326,086 - 27,515,793 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	23	27,108,061 - 27,216,255 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	23	27,088,868 - 27,278,144 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	23	27,337,409 - 27,526,786 (+)	NCBI		UU_Cfam_GSD_1.0

Ankrd28
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	175,412,381 - 175,592,059 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936473	8,550,950 - 8,730,902 (-)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936473	8,550,851 - 8,730,845 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ANKRD28
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	2,922,853 - 3,135,709 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	2,922,855 - 3,135,743 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	3,071,720 - 3,208,254 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ANKRD28
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	15	60,492,121 - 60,681,487 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	15	60,491,029 - 60,617,911 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666041	33,532,424 - 33,721,901 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ankrd28
(Heterocephalus glaber - naked mole-rat)

Naked Mole-rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624821	965,854 - 1,155,128 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624821	964,162 - 1,155,437 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Ankrd28
468 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	27
Count of miRNA genes:	26
Interacting mature miRNAs:	27
Transcripts:	ENSRNOT00000026680
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1357403	Slep4	Serum leptin concentration QTL 4	3.91		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	16	1	9639137	Rat
1600369	Hcas8	Hepatocarcinoma susceptibility QTL 8			liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	16	1	22477621	Rat
631830	Alc7	Alcohol consumption QTL 7	2.9		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	16	1	26727669	Rat
634355	Rends4	Renal damage susceptibility QTL 4		0.05	kidney blood vessel morphology trait (VT:0000530)	organ lesion measurement (CMO:0000677)	16	1	26727669	Rat
1582235	Insul8	Insulin level QTL 8	3.3	0.0063	blood insulin amount (VT:0001560)	calculated serum insulin level (CMO:0000359)	16	1	26727669	Rat
9590151	Scort8	Serum corticosterone level QTL 8	8.45	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	16	1	30836262	Rat
2302380	Slep6	Serum leptin concentration QTL 6	3.36		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	16	1	32139025	Rat
2307172	Activ4	Activity QTL 4	3.71	0.00023	locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	16	1	33418960	Rat
1354584	Despr6	Despair related QTL 6	3.1	0.0067	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	16	1	39533930	Rat
2303566	Bw90	Body weight QTL 90	2		body mass (VT:0001259)	body weight (CMO:0000012)	16	1	39533930	Rat
631561	Hcuc2	Hepatic copper content QTL 2	2.8		liver copper amount (VT:0003065)	liver total copper weight (CMO:0001507)	16	1	39533949	Rat
6903319	Bw114	Body weight QTL 114	2.7	0.0037	body mass (VT:0001259)	body weight (CMO:0000012)	16	1	43534949	Rat
7411664	Foco30	Food consumption QTL 30	11	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	16	1	44588133	Rat
1354625	Despr7	Despair related QTL 7	3.16	0.016	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	16	1	44977551	Rat
1600378	Arunc4	Aerobic running capacity QTL 4		0.03	exercise endurance trait (VT:0002332)	maximum distance run on treadmill (CMO:0001406)	16	380245	80345693	Rat
2293343	Glom16	Glomerulus QTL 16	7.4		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	16	832236	46053497	Rat
2312660	Bw95	Body weight QTL 95		0.05	inguinal fat pad mass (VT:0010424)	inguinal fat pad weight to body weight ratio (CMO:0001253)	16	832236	59492508	Rat
2312663	Slep9	Serum leptin concentration QTL 9		0.001	blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	16	832236	59492508	Rat
2312666	Insul16	Insulin level QTL 16		0.01	blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	16	832236	59492508	Rat
2312669	Stl23	Serum triglyceride level QTL 23		0.01	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	16	832236	59492508	Rat
2301406	Kidm39	Kidney mass QTL 39		0.002	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	16	2851709	15884239	Rat
1300133	Rf24	Renal function QTL 24	3.64		blood creatinine amount (VT:0005328)	creatinine clearance (CMO:0000765)	16	3380150	21361552	Rat
2306902	Bp339	Blood pressure QTL 339		0.01	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	16	3380150	43025077	Rat
737825	Alc13	Alcohol consumption QTL 13	4.5		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	16	4227609	16039848	Rat
70183	BpQTLcluster13	Blood pressure QTL cluster 13	3.654		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	16	4227609	43025077	Rat
70183	BpQTLcluster13	Blood pressure QTL cluster 13	3.654		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	16	4227609	43025077	Rat
70183	BpQTLcluster13	Blood pressure QTL cluster 13	3.654		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	16	4227609	43025077	Rat
737819	Hcas4	Hepatocarcinoma susceptibility QTL 4	4.43		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	16	4227609	46975965	Rat
61405	Niddm6	Non-insulin dependent diabetes mellitus QTL 6	3.66	0.001	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	16	4227609	48972724	Rat
61338	Bp23	Blood pressure QTL 23	4.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	16	4227609	49227609	Rat
737826	Alc11	Alcohol consumption QTL 11	3.2		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	16	4227609	60252231	Rat
61372	Bp40	Blood pressure QTL 40	2.2		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	16	4227730	17696785	Rat

Markers in Region

AI604979

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	6,921,423 - 6,921,508 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	7,818,540 - 7,818,624	NCBI	Rnor6.0
Rnor_5.0	16	7,740,067 - 7,740,151	UniSTS	Rnor5.0
RGSC_v3.4	16	7,169,493 - 7,169,577	UniSTS	RGSC3.4
Celera	16	8,276,737 - 8,276,821	UniSTS
Cytogenetic Map	16	p16	UniSTS

RH128789

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	6,918,608 - 6,918,817 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	7,815,725 - 7,815,933	NCBI	Rnor6.0
Rnor_5.0	16	7,737,252 - 7,737,460	UniSTS	Rnor5.0
RGSC_v3.4	16	7,166,678 - 7,166,886	UniSTS	RGSC3.4
Celera	16	8,279,428 - 8,279,636	UniSTS
RH 3.4 Map	16	59.0	UniSTS
Cytogenetic Map	16	p16	UniSTS

RH129485

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	6,919,984 - 6,920,178 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	7,817,101 - 7,817,294	NCBI	Rnor6.0
Rnor_5.0	16	7,738,628 - 7,738,821	UniSTS	Rnor5.0
RGSC_v3.4	16	7,168,054 - 7,168,247	UniSTS	RGSC3.4
Celera	16	8,278,067 - 8,278,260	UniSTS
RH 3.4 Map	16	62.9	UniSTS
Cytogenetic Map	16	p16	UniSTS

BF397906

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	6,920,851 - 6,921,015 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	7,817,968 - 7,818,131	NCBI	Rnor6.0
Rnor_5.0	16	7,739,495 - 7,739,658	UniSTS	Rnor5.0
RGSC_v3.4	16	7,168,921 - 7,169,084	UniSTS	RGSC3.4
Celera	16	8,277,230 - 8,277,393	UniSTS
RH 3.4 Map	16	60.7	UniSTS
Cytogenetic Map	16	p16	UniSTS

BE108881

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	6,935,851 - 6,936,020 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	7,832,967 - 7,833,135	NCBI	Rnor6.0
Rnor_5.0	16	7,754,494 - 7,754,662	UniSTS	Rnor5.0
RGSC_v3.4	16	7,183,920 - 7,184,088	UniSTS	RGSC3.4
Celera	16	8,262,287 - 8,262,455	UniSTS
RH 3.4 Map	16	60.8	UniSTS
Cytogenetic Map	16	p16	UniSTS

RH137004

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	6,959,773 - 6,959,926 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	7,856,888 - 7,857,040	NCBI	Rnor6.0
Rnor_5.0	16	7,778,415 - 7,778,567	UniSTS	Rnor5.0
RGSC_v3.4	16	7,208,786 - 7,208,938	UniSTS	RGSC3.4
Celera	16	8,238,456 - 8,238,608	UniSTS
RH 3.4 Map	16	61.4	UniSTS
Cytogenetic Map	16	p16	UniSTS

UniSTS:237150

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	6,921,424 - 6,921,629 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	7,818,541 - 7,818,745	NCBI	Rnor6.0
Rnor_5.0	16	7,740,068 - 7,740,272	UniSTS	Rnor5.0
RGSC_v3.4	16	7,169,494 - 7,169,698	UniSTS	RGSC3.4
Celera	16	8,276,616 - 8,276,820	UniSTS
Cytogenetic Map	16	p16	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	2	41	42	26	17	26	8	10	74	35	41	11	8
Low	1	2	15	15	2	15		1
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_001057687	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006222119	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006222120	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006222121	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006252707	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006252708	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008771170	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017587538	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039094977	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039094978	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039094979	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039094980	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039094981	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039094982	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039094983	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039094984	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005494817	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH474046	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000273	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000026680 ⟹ ENSRNOP00000026680

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	16	6,921,345 - 7,050,249 (-)	Ensembl
Rnor_6.0 Ensembl	16	7,818,667 - 7,928,518 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000094533 ⟹ ENSRNOP00000089722

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	16	6,921,345 - 7,000,980 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000098800 ⟹ ENSRNOP00000078059

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	16	6,921,345 - 7,000,643 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000112368 ⟹ ENSRNOP00000081029

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	16	6,914,336 - 7,050,249 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000120315 ⟹ ENSRNOP00000095965

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	16	6,914,336 - 7,026,181 (-)	Ensembl

RefSeq Acc Id:

XM_039094977 ⟹ XP_038950905

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	16	6,918,487 - 6,999,245 (-)	NCBI

RefSeq Acc Id:

XM_039094978 ⟹ XP_038950906

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	16	6,921,750 - 7,050,244 (-)	NCBI

RefSeq Acc Id:

XM_039094979 ⟹ XP_038950907

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	16	6,921,750 - 7,050,244 (-)	NCBI

RefSeq Acc Id:

XM_039094980 ⟹ XP_038950908

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	16	6,921,750 - 7,000,694 (-)	NCBI

RefSeq Acc Id:

XM_039094981 ⟹ XP_038950909

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	16	6,921,750 - 7,050,244 (-)	NCBI

RefSeq Acc Id:

XM_039094982 ⟹ XP_038950910

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	16	6,921,750 - 7,050,244 (-)	NCBI

RefSeq Acc Id:

XM_039094983 ⟹ XP_038950911

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	16	6,921,750 - 7,001,080 (-)	NCBI

RefSeq Acc Id:

XM_039094984 ⟹ XP_038950912

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	16	6,918,490 - 6,963,871 (-)	NCBI

RefSeq Acc Id:

XR_005494817

RefSeq Status:

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	16	6,921,897 - 7,000,695 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_038950905	(Get FASTA)	NCBI Sequence Viewer
	XP_038950906	(Get FASTA)	NCBI Sequence Viewer
	XP_038950907	(Get FASTA)	NCBI Sequence Viewer
	XP_038950908	(Get FASTA)	NCBI Sequence Viewer
	XP_038950909	(Get FASTA)	NCBI Sequence Viewer
	XP_038950910	(Get FASTA)	NCBI Sequence Viewer
	XP_038950911	(Get FASTA)	NCBI Sequence Viewer
	XP_038950912	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL88937	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

ENSRNOP00000026680 ⟸ ENSRNOT00000026680

RefSeq Acc Id:	XP_038950905 ⟸ XM_039094977
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038950912 ⟸ XM_039094984
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_038950909 ⟸ XM_039094981
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I5Y6T8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038950906 ⟸ XM_039094978
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I5ZRD0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038950910 ⟸ XM_039094982
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I5Y6T8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038950907 ⟸ XM_039094979
- Peptide Label:	isoform X3
- UniProtKB:	F1M400 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038950911 ⟸ XM_039094983
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I5Y6T8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038950908 ⟸ XM_039094980
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I5Y6T8 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSRNOP00000081029 ⟸ ENSRNOT00000112368

RefSeq Acc Id:

ENSRNOP00000095965 ⟸ ENSRNOT00000120315

RefSeq Acc Id:

ENSRNOP00000089722 ⟸ ENSRNOT00000094533

RefSeq Acc Id:

ENSRNOP00000078059 ⟸ ENSRNOT00000098800

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-F1M400-F1-model_v2	AlphaFold	F1M400	1-1078	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1559931	AgrOrtholog
BioCyc Gene	G2FUF-12135	BioCyc
Ensembl Genes	ENSRNOG00000019697	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000026680	ENTREZGENE
	ENSRNOP00000026680.7	UniProtKB/TrEMBL
	ENSRNOP00000078059	ENTREZGENE
	ENSRNOP00000078059.1	UniProtKB/TrEMBL
	ENSRNOP00000081029	ENTREZGENE
	ENSRNOP00000081029.1	UniProtKB/TrEMBL
	ENSRNOP00000089722	ENTREZGENE
	ENSRNOP00000089722.1	UniProtKB/TrEMBL
	ENSRNOP00000095965.1	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000026680	ENTREZGENE
	ENSRNOT00000026680.8	UniProtKB/TrEMBL
	ENSRNOT00000094533	ENTREZGENE
	ENSRNOT00000094533.1	UniProtKB/TrEMBL
	ENSRNOT00000098800	ENTREZGENE
	ENSRNOT00000098800.1	UniProtKB/TrEMBL
	ENSRNOT00000112368	ENTREZGENE
	ENSRNOT00000112368.1	UniProtKB/TrEMBL
	ENSRNOT00000120315.1	UniProtKB/TrEMBL
Gene3D-CATH	1.25.40.20	UniProtKB/TrEMBL
InterPro	Ankyrin_rpt	UniProtKB/TrEMBL
	Ankyrin_rpt-contain_sf	UniProtKB/TrEMBL
NCBI Gene	306264	ENTREZGENE
Pfam	Ank	UniProtKB/TrEMBL
	Ank_2	UniProtKB/TrEMBL
	Ank_4	UniProtKB/TrEMBL
PhenoGen	Ankrd28	PhenoGen
PRINTS	ANKYRIN	UniProtKB/TrEMBL
PROSITE	ANK_REPEAT	UniProtKB/TrEMBL
SMART	ANK	UniProtKB/TrEMBL
Superfamily-SCOP	ANK	UniProtKB/TrEMBL
UniProt	A0A8I5Y6T8	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZRD0	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6APS9_RAT	UniProtKB/TrEMBL
	A0A8I6GHK6_RAT	UniProtKB/TrEMBL
	F1M400	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-07-29	Ankrd28	ankyrin repeat domain 28	LOC102549679	serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A-like	Data Merged	737654	PROVISIONAL
2013-12-18	LOC102549679	serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A-like			Symbol and Name status set to provisional	70820	PROVISIONAL
2008-02-28	Ankrd28	ankyrin repeat domain 28	RGD1559931_predicted	similar to Ankyrin repeat domain protein 28 (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-07	RGD1559931_predicted	similar to Ankyrin repeat domain protein 28 (predicted)	LOC306264	similar to Ankyrin repeat domain protein 28	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC306264	similar to Ankyrin repeat domain protein 28			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar