Grid1 (glutamate ionotropic receptor delta type subunit 1) - Rat Genome Database

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Gene: Grid1 (glutamate ionotropic receptor delta type subunit 1) Rattus norvegicus
Analyze
Symbol: Grid1
Name: glutamate ionotropic receptor delta type subunit 1
RGD ID: 68366
Description: Enables identical protein binding activity. Predicted to be involved in several processes, including glutamatergic synaptic transmission; regulation of postsynapse organization; and social behavior. Located in postsynaptic membrane. Orthologous to human GRID1 (glutamate ionotropic receptor delta type subunit 1); INTERACTS WITH (S)-nicotine; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: GluD1; gluR delta-1 subunit; glutamate receptor delta-1 subunit; glutamate receptor ionotropic, delta-1; glutamate receptor ionotropic, delta-1-like; glutamate receptor, ionotropic, delta 1; LOC103690098
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81610,145,018 - 10,894,184 (+)NCBIGRCr8
mRatBN7.21610,138,564 - 10,885,803 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1610,138,925 - 10,885,808 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1610,153,103 - 10,906,564 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01611,297,808 - 12,051,305 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01610,148,154 - 10,890,093 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01611,170,831 - 11,932,197 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1611,599,753 - 11,932,324 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0169,495,903 - 10,248,095 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.01612,219,210 - 12,273,260 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41610,473,353 - 11,202,161 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11610,473,350 - 11,202,159 (+)NCBI
Celera164,341,706 - 5,080,716 (-)NCBICelera
Cytogenetic Map16p15NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Cryo-EM structures of the ionotropic glutamate receptor GluD1 reveal a non-swapped architecture. Burada AP, etal., Nat Struct Mol Biol. 2020 Jan;27(1):84-91. doi: 10.1038/s41594-019-0359-y. Epub 2020 Jan 10.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Differential localization of delta glutamate receptors in the rat cerebellum: coexpression with AMPA receptors in parallel fiber-spine synapses and absence from climbing fiber-spine synapses. Landsend AS, etal., J Neurosci. 1997 Jan 15;17(2):834-42.
4. The rat delta-1 and delta-2 subunits extend the excitatory amino acid receptor family. Lomeli H, etal., FEBS Lett 1993 Jan 11;315(3):318-22.
5. Identification of rat EMAP, a delta-glutamate receptor binding protein. Ly CD, etal., Biochem Biophys Res Commun 2002 Feb 15;291(1):85-90.
6. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
7. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
8. GOA pipeline RGD automated data pipeline
9. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
11. Tentative Sequence Identification Numbers Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
12. PKC regulates the delta2 glutamate receptor interaction with S-SCAM/MAGI-2 protein. Yap CC, etal., Biochem Biophys Res Commun 2003 Feb 21;301(4):1122-8.
Additional References at PubMed
PMID:19056867   PMID:22412961   PMID:25001082   PMID:38479882  


Genomics

Comparative Map Data
Grid1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81610,145,018 - 10,894,184 (+)NCBIGRCr8
mRatBN7.21610,138,564 - 10,885,803 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1610,138,925 - 10,885,808 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1610,153,103 - 10,906,564 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01611,297,808 - 12,051,305 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01610,148,154 - 10,890,093 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01611,170,831 - 11,932,197 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1611,599,753 - 11,932,324 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0169,495,903 - 10,248,095 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.01612,219,210 - 12,273,260 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41610,473,353 - 11,202,161 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11610,473,350 - 11,202,159 (+)NCBI
Celera164,341,706 - 5,080,716 (-)NCBICelera
Cytogenetic Map16p15NCBI
GRID1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381085,599,552 - 86,366,795 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1085,599,552 - 86,366,795 (-)EnsemblGRCh38hg38GRCh38
GRCh371087,359,309 - 88,126,552 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361087,349,292 - 88,116,230 (-)NCBINCBI36Build 36hg18NCBI36
Build 341087,349,291 - 88,116,230NCBI
Celera1081,354,751 - 82,123,191 (-)NCBICelera
Cytogenetic Map10q23.1-q23.2NCBI
HuRef1081,205,202 - 81,976,286 (-)NCBIHuRef
CHM1_11087,641,441 - 88,407,991 (-)NCBICHM1_1
T2T-CHM13v2.01086,479,694 - 87,247,328 (-)NCBIT2T-CHM13v2.0
Grid1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391434,541,751 - 35,305,344 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1434,542,065 - 35,305,336 (+)EnsemblGRCm39 Ensembl
GRCm381434,820,003 - 35,583,387 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1434,820,108 - 35,583,379 (+)EnsemblGRCm38mm10GRCm38
MGSCv371435,633,322 - 36,394,301 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361433,649,258 - 34,409,989 (+)NCBIMGSCv36mm8
Celera1431,078,546 - 31,813,276 (+)NCBICelera
Cytogenetic Map14BNCBI
cM Map1420.84NCBI
Grid1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555104,905,518 - 5,562,464 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555104,902,908 - 5,563,924 (-)NCBIChiLan1.0ChiLan1.0
GRID1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2897,584,241 - 98,362,215 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11097,589,559 - 98,367,426 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01082,017,436 - 82,795,410 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11085,585,863 - 85,905,944 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1085,586,147 - 86,353,410 (-)Ensemblpanpan1.1panPan2
GRID1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1433,516,893 - 34,155,573 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl433,516,911 - 34,156,416 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha433,507,774 - 34,146,714 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0433,840,008 - 34,487,774 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl433,840,085 - 34,488,086 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1433,701,344 - 34,360,808 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0433,891,193 - 34,530,266 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0434,396,023 - 35,035,357 (-)NCBIUU_Cfam_GSD_1.0
Grid1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721344,376,827 - 45,074,447 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936804488,427 - 1,182,100 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936804487,609 - 1,182,335 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GRID1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1486,539,916 - 87,227,133 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11486,539,896 - 87,227,089 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21493,398,091 - 93,510,559 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GRID1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1945,485,219 - 46,265,186 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660485,607,524 - 6,403,324 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Grid1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624841652,272 - 1,390,917 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624841651,497 - 1,393,482 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Grid1
6032 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:79
Count of miRNA genes:58
Interacting mature miRNAs:72
Transcripts:ENSRNOT00000033838
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631561Hcuc2Hepatic copper content QTL 22.8liver copper amount (VT:0003065)liver total copper weight (CMO:0001507)16139533949Rat
1582235Insul8Insulin level QTL 83.30.0063blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)16126727669Rat
2307172Activ4Activity QTL 43.710.00023locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)16133418960Rat
1354584Despr6Despair related QTL 63.10.0067locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16139533930Rat
2302380Slep6Serum leptin concentration QTL 63.36blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)16132139025Rat
737819Hcas4Hepatocarcinoma susceptibility QTL 44.43liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)16422760946975965Rat
9590151Scort8Serum corticosterone level QTL 88.450.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)16130836262Rat
1354625Despr7Despair related QTL 73.160.016locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16144977551Rat
61338Bp23Blood pressure QTL 234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16422760949227609Rat
61405Niddm6Non-insulin dependent diabetes mellitus QTL 63.660.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)16422760948972724Rat
631830Alc7Alcohol consumption QTL 72.9consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16126727669Rat
7411664Foco30Food consumption QTL 30110.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)16144588133Rat
1600378Arunc4Aerobic running capacity QTL 40.03exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)1638024580345693Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)16422760943025077Rat
1600369Hcas8Hepatocarcinoma susceptibility QTL 8liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)16122477621Rat
737826Alc11Alcohol consumption QTL 113.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16422760960252231Rat
737825Alc13Alcohol consumption QTL 134.5consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16422760916039848Rat
2303566Bw90Body weight QTL 902body mass (VT:0001259)body weight (CMO:0000012)16139533930Rat
2312663Slep9Serum leptin concentration QTL 90.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1683223659492508Rat
2306902Bp339Blood pressure QTL 3390.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16338015043025077Rat
1300133Rf24Renal function QTL 243.64blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)16338015021361552Rat
2312660Bw95Body weight QTL 950.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)1683223659492508Rat
2312666Insul16Insulin level QTL 160.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1683223659492508Rat
634355Rends4Renal damage susceptibility QTL 40.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)16126727669Rat
61372Bp40Blood pressure QTL 402.2blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)16422773017696785Rat
2293343Glom16Glomerulus QTL 167.4kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1683223646053497Rat
2301406Kidm39Kidney mass QTL 390.002kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)16285170915884239Rat
6903319Bw114Body weight QTL 1142.70.0037body mass (VT:0001259)body weight (CMO:0000012)16143534949Rat
2312669Stl23Serum triglyceride level QTL 230.01blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1683223659492508Rat

Markers in Region
D16Got14  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21610,864,416 - 10,864,617 (+)MAPPERmRatBN7.2
Rnor_6.01612,357,164 - 12,357,364NCBIRnor6.0
Rnor_6.01611,910,811 - 11,911,011NCBIRnor6.0
Rnor_5.01612,251,887 - 12,252,087UniSTSRnor5.0
Rnor_5.01610,226,709 - 10,226,909UniSTSRnor5.0
RGSC_v3.41611,180,775 - 11,180,975UniSTSRGSC3.4
RGSC_v3.41611,180,774 - 11,180,975RGDRGSC3.4
RGSC_v3.11611,180,773 - 11,180,973RGD
Celera164,362,894 - 4,363,096UniSTS
RH 3.4 Map16100.31UniSTS
RH 3.4 Map16100.31RGD
Cytogenetic Map16p15UniSTS
Grid1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21610,885,334 - 10,885,466 (+)MAPPERmRatBN7.2
Rnor_6.01612,378,083 - 12,378,214NCBIRnor6.0
Rnor_6.01611,931,729 - 11,931,860NCBIRnor6.0
Rnor_5.01610,247,627 - 10,247,758UniSTSRnor5.0
Rnor_5.01612,272,806 - 12,272,937UniSTSRnor5.0
RGSC_v3.41611,201,693 - 11,201,824UniSTSRGSC3.4
Celera164,342,043 - 4,342,174UniSTS
Cytogenetic Map16p15UniSTS
RH143103  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21610,422,748 - 10,422,963 (+)MAPPERmRatBN7.2
Rnor_6.01611,458,765 - 11,458,979NCBIRnor6.0
Rnor_5.0169,778,870 - 9,779,084UniSTSRnor5.0
RGSC_v3.41610,785,242 - 10,785,456UniSTSRGSC3.4
Celera164,797,053 - 4,797,267UniSTS
RH 3.4 Map16100.3UniSTS
Cytogenetic Map16p15UniSTS
AU048365  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21610,462,409 - 10,462,594 (+)MAPPERmRatBN7.2
Rnor_6.01611,498,404 - 11,498,588NCBIRnor6.0
Rnor_5.0169,818,509 - 9,818,693UniSTSRnor5.0
RGSC_v3.41610,824,036 - 10,824,220UniSTSRGSC3.4
Celera164,757,768 - 4,757,946UniSTS
Cytogenetic Map16p15UniSTS
BF390373  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21610,169,258 - 10,169,415 (+)MAPPERmRatBN7.2
Rnor_6.01611,201,257 - 11,201,413NCBIRnor6.0
Rnor_5.0169,526,329 - 9,526,485UniSTSRnor5.0
RGSC_v3.41610,503,778 - 10,503,934UniSTSRGSC3.4
Celera165,050,861 - 5,051,017UniSTS
RH 3.4 Map1697.11UniSTS
Cytogenetic Map16p15UniSTS
UniSTS:143254  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21610,885,342 - 10,885,495 (+)MAPPERmRatBN7.2
Rnor_6.01612,378,091 - 12,378,243NCBIRnor6.0
Rnor_6.01611,931,737 - 11,931,889NCBIRnor6.0
Rnor_5.01610,247,635 - 10,247,787UniSTSRnor5.0
Rnor_5.01612,272,814 - 12,272,966UniSTSRnor5.0
RGSC_v3.41611,201,701 - 11,201,853UniSTSRGSC3.4
Celera164,342,014 - 4,342,166UniSTS
Cytogenetic Map16p15UniSTS
AU049780  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21610,553,449 - 10,553,583 (+)MAPPERmRatBN7.2
Rnor_6.01611,588,209 - 11,588,342NCBIRnor6.0
Rnor_5.0169,909,146 - 9,909,279UniSTSRnor5.0
RGSC_v3.41610,917,848 - 10,917,981UniSTSRGSC3.4
Celera164,667,818 - 4,667,951UniSTS
Cytogenetic Map16p15UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 71 70 39 24 39 6 196 96 93 44 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000079833   ⟹   ENSRNOP00000073010
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1610,138,925 - 10,885,808 (+)Ensembl
Rnor_6.0 Ensembl1611,599,753 - 11,932,324 (+)Ensembl
RefSeq Acc Id: NM_024378   ⟹   NP_077354
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81610,145,026 - 10,891,941 (+)NCBI
mRatBN7.21610,138,835 - 10,885,803 (+)NCBI
Rnor_6.01611,170,831 - 11,932,197 (+)NCBI
Rnor_5.0169,495,903 - 10,248,095 (+)NCBI
RGSC_v3.41610,473,353 - 11,202,161 (+)RGD
Celera164,341,706 - 5,080,716 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039094853   ⟹   XP_038950781
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81610,145,018 - 10,891,373 (+)NCBI
mRatBN7.21610,138,564 - 10,885,201 (+)NCBI
RefSeq Acc Id: XM_063275757   ⟹   XP_063131827
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81610,145,018 - 10,894,184 (+)NCBI
RefSeq Acc Id: XM_063275758   ⟹   XP_063131828
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81610,496,799 - 10,894,184 (+)NCBI
RefSeq Acc Id: XM_063275759   ⟹   XP_063131829
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81610,496,799 - 10,894,184 (+)NCBI
RefSeq Acc Id: NP_077354   ⟸   NM_024378
- Peptide Label: precursor
- UniProtKB: Q63225 (UniProtKB/Swiss-Prot),   Q62640 (UniProtKB/Swiss-Prot),   A6KFQ4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000073010   ⟸   ENSRNOT00000079833
RefSeq Acc Id: XP_038950781   ⟸   XM_039094853
- Peptide Label: isoform X2
- UniProtKB: A6KFQ4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131827   ⟸   XM_063275757
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063131828   ⟸   XM_063275758
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063131829   ⟸   XM_063275759
- Peptide Label: isoform X3
Protein Domains
Ionotropic glutamate receptor C-terminal   Ionotropic glutamate receptor L-glutamate and

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q62640-F1-model_v2 AlphaFold Q62640 1-1009 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:68366 AgrOrtholog
BioCyc Gene G2FUF-12049 BioCyc
Ensembl Genes ENSRNOG00000055499 Ensembl, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00055009148 UniProtKB/Swiss-Prot
  ENSRNOG00060010950 UniProtKB/Swiss-Prot
  ENSRNOG00065020417 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000079833 UniProtKB/TrEMBL
  ENSRNOT00000079833.2 UniProtKB/Swiss-Prot
  ENSRNOT00055015478 UniProtKB/Swiss-Prot
  ENSRNOT00060018525 UniProtKB/Swiss-Prot
  ENSRNOT00065034515 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.287.70 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.40.50.2300 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Periplasmic binding protein-like II UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro ANF_lig-bd_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Glu/Gly-bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Iono_rcpt_met UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ionotropic_Glu_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Iontro_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Peripla_BP_I UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:79219 UniProtKB/Swiss-Prot
NCBI Gene 79219 ENTREZGENE
PANTHER GLUTAMATE RECEPTOR IONOTROPIC, DELTA-1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  IONOTROPIC GLUTAMATE RECEPTOR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam ANF_receptor UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Lig_chan UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Lig_chan-Glu_bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Grid1 PhenoGen
PRINTS NMDARECEPTOR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000055499 RatGTEx
  ENSRNOG00055009148 RatGTEx
  ENSRNOG00060010950 RatGTEx
  ENSRNOG00065020417 RatGTEx
SMART Lig_chan-Glu_bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PBPe UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Periplasmic binding protein-like II UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF53822 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGR TC217181
UniProt A6KFQ4 ENTREZGENE, UniProtKB/TrEMBL
  A6KFQ5_RAT UniProtKB/TrEMBL
  F1LUR6_RAT UniProtKB/TrEMBL
  GRID1_RAT UniProtKB/Swiss-Prot, ENTREZGENE
  Q63225 ENTREZGENE
UniProt Secondary Q63225 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Grid1  glutamate ionotropic receptor delta type subunit 1  LOC103690098  glutamate receptor ionotropic, delta-1-like  Data merged from RGD:9138374 737654 PROVISIONAL
2016-02-11 Grid1  glutamate ionotropic receptor delta type subunit 1  Grid1  glutamate receptor, ionotropic, delta 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2014-08-25 LOC103690098  glutamate receptor ionotropic, delta-1-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2002-06-10 Grid1  glutamate receptor, ionotropic, delta 1      Name updated 70584 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_expression low expression in adult brain with a developmental peak in the caudate putamen at late embryonic/early postnatal stages 68255