Gene: Scn11a (sodium voltage-gated channel alpha subunit 11) Rattus norvegicus
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Symbol: Scn11a
Name: sodium voltage-gated channel alpha subunit 11
Description: ENCODES a protein that exhibits voltage-gated sodium channel activity (ortholog); INVOLVED IN regulation of sensory perception of pain (ortholog); sodium ion transport (ortholog); ASSOCIATED WITH Brugada syndrome (ortholog); Congenital Pain Insensitivity (ortholog); Episodic Pain Syndrome, Familial, 3 (ortholog); FOUND IN glutamatergic synapse; integral component of presynaptic membrane; axon (ortholog); INTERACTS WITH 6-propyl-2-thiouracil; amitriptyline; atrazine
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: NaN; sensory neuron sodium channel 2; sodium channel protein type 11 subunit alpha; sodium channel protein type XI subunit alpha; sodium channel voltage-gated type 11 alpha polypeptide; sodium channel voltage-gated type XI alpha polypeptide; sodium channel, voltage-gated, type 11, alpha polypeptide; sodium channel, voltage-gated, type XI, alpha; sodium channel, voltage-gated, type XI, alpha polypeptide; sodium channel, voltage-gated, type XI, alpha subunit; sodium channel, voltage-gated, type11, alpha polypeptide; voltage-gated sodium channel NAV1.9b; voltage-gated sodium channel subunit alpha Nav1.9
Orthologs:
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.08128,450,793 - 128,527,510 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.08127,654,010 - 127,724,293 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48124,724,493 - 124,794,654 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.18124,744,232 - 124,814,391 (-)NCBI
Celera8118,645,022 - 118,713,950 (-)NCBICelera
Cytogenetic Map8q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References - curated
References - uncurated
RGD Disease Portals

Genomics

Comparative Map Data
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 5.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
RGD Curation Notes
 
More on Scn11a
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 3630
Created: 2000-05-25
Species: Rattus norvegicus
Last Modified: 2019-02-05
Status: ACTIVE