Xpa (XPA, DNA damage recognition and repair factor)

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Gene: Xpa (XPA, DNA damage recognition and repair factor) Rattus norvegicus

Analyze

Symbol:

Xpa

Name:

XPA, DNA damage recognition and repair factor

RGD ID:

1308769

Description:

Predicted to enable DNA binding activity; protein domain specific binding activity; and protein homodimerization activity. Involved in response to auditory stimulus. Predicted to be located in intercellular bridge and nucleoplasm. Predicted to be part of nucleotide-excision repair factor 1 complex. Human ortholog(s) of this gene implicated in xeroderma pigmentosum and xeroderma pigmentosum group A. Orthologous to human XPA (XPA, DNA damage recognition and repair factor); PARTICIPATES IN altered nucleotide excision repair pathway; nucleotide excision repair pathway; INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

DNA repair protein complementing XP-A cells; LOC298074; xeroderma pigmentosum, complementation group A

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	5	60,431,673 - 60,476,438 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	60,431,673 - 60,475,726 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	62,404,102 - 62,448,198 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	5	64,223,605 - 64,267,701 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	5	64,192,858 - 64,236,954 (-)	NCBI	Rnor_WKY
Rnor_6.0	5	61,749,767 - 61,793,641 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	61,749,767 - 61,792,928 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	66,266,229 - 66,310,103 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	62,706,719 - 62,750,771 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	5	62,726,371 - 62,750,949 (-)	NCBI
Celera	5	58,992,396 - 59,036,208 (-)	NCBI		Celera
Cytogenetic Map	5	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

basal cell carcinoma (ISO)

Cockayne syndrome (ISO)

congenital disorder of glycosylation Ii (ISO)

congenital disorder of glycosylation type II (ISO)

congenital myasthenic syndrome 14 (ISO)

Dwarfism, Low-Birth-Weight Type, with Unresponsiveness to Growth Hormone (ISO)

Generalized Epilepsy (ISO)

genetic disease (ISO)

intellectual disability (ISO)

Intestinal Neoplasms (ISO)

Liver Neoplasms (ISO)

Micronuclei, Chromosome-Defective (ISO)

nephronophthisis (ISO)

ovarian cancer (ISO)

Skin Neoplasms (ISO)

thoracic aortic aneurysm (ISO)

xeroderma pigmentosum (ISO)

xeroderma pigmentosum group A (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

(+)-taxifolin (ISO)

(-)-quinic acid (ISO)

1,1'-azobis(N,N-dimethylformamide) (ISO)

1,2-dichloroethane (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,6-dinitrotoluene (EXP)

2-hydroxypropanoic acid (ISO)

3,3',4,4',5-pentachlorobiphenyl (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (ISO)

7,12-dimethyltetraphene (ISO)

acetamide (EXP)

acrylamide (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

antimony trichloride (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

arsenous acid (ISO)

atrazine (ISO)

benzene (ISO)

benzo[a]pyrene (EXP,ISO)

bis(2-chloroethyl) sulfide (ISO)

bisphenol A (EXP,ISO)

cadmium atom (ISO)

cadmium dichloride (EXP,ISO)

carbamazepine (ISO)

carbon nanotube (ISO)

chloroethene (ISO)

cisplatin (ISO)

copper atom (ISO)

copper(0) (ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

dexamethasone (ISO)

diarsenic trioxide (ISO)

doxorubicin (ISO)

ebselen (ISO)

epoxiconazole (ISO)

folic acid (ISO)

furan (EXP)

gentamycin (EXP)

gold atom (ISO)

gold(0) (ISO)

hydrogen peroxide (ISO)

indole-3-methanol (EXP)

indometacin (ISO)

irinotecan (ISO)

isoprenaline (ISO)

kainic acid (EXP)

lead diacetate (ISO)

lipopolysaccharide (ISO)

lovastatin (EXP)

metam (ISO)

methyl methanesulfonate (ISO)

methylmercury chloride (ISO)

mitomycin C (ISO)

paracetamol (ISO)

paraquat (ISO)

phenacetin (ISO)

PhIP (ISO)

pirinixic acid (ISO)

rac-lactic acid (ISO)

resveratrol (ISO)

Se-methyl-L-selenocysteine (ISO)

Se-methylselenocysteine (ISO)

selenocystine (ISO)

selenomethionine (ISO)

senecionine (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenite (ISO)

tamoxifen (EXP)

testosterone (ISO)

tetrachloromethane (EXP)

thioacetamide (EXP)

tributylstannane (EXP)

trichloroethene (EXP)

trichostatin A (ISO)

triphenyl phosphate (EXP)

valproic acid (ISO)

vorinostat (ISO)

Y-27632 (ISO)

zidovudine (ISO)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

base-excision repair (IBA)

DNA repair (ISO)

intrinsic apoptotic signaling pathway in response to DNA damage (ISO)

multicellular organism growth (ISO)

nucleotide-excision repair (ISO)

nucleotide-excision repair involved in interstrand cross-link repair (IBA)

nucleotide-excision repair, DNA damage recognition (IBA)

positive regulation of transcription initiation by RNA polymerase II (ISO)

protein localization to nucleus (ISO)

regulation of autophagy (ISO)

response to auditory stimulus (IEP)

response to oxidative stress (ISO)

response to toxic substance (ISO)

response to UV (ISO)

UV protection (ISO)

UV-damage excision repair (IBA)

Cellular Component

DNA replication factor A complex (ISO)

intercellular bridge (ISO)

nucleoplasm (ISO)

nucleotide-excision repair factor 1 complex (IBA)

nucleus (ISO)

Molecular Function

damaged DNA binding (IBA,ISO)

metal ion binding (IEA)

nucleic acid binding (ISO)

protein binding (ISO)

protein domain specific binding (ISO)

protein homodimerization activity (ISO)

sequence-specific double-stranded DNA binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

altered nucleotide excision repair pathway (ISO)

nucleotide excision repair pathway (IEA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	An Xpb mouse model for combined xeroderma pigmentosum and cockayne syndrome reveals progeroid features upon further attenuation of DNA repair.	Andressoo JO, etal., Mol Cell Biol. 2009 Mar;29(5):1276-90. doi: 10.1128/MCB.01229-08. Epub 2008 Dec 29.
2.	The genetic association database.	Becker KG, etal., Nat Genet. 2004 May;36(5):431-2.
3.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
5.	Noise exposure potentiates the subcellular distribution of nucleotide excision repair proteins within spiral ganglion neurons.	Guthrie OW and Xu H, Hear Res. 2012 Dec;294(1-2):21-30. doi: 10.1016/j.heares.2012.09.001. Epub 2012 Sep 27.
6.	Nucleotide excision repair: new tricks with old bricks.	Kamileri I, etal., Trends Genet. 2012 Nov;28(11):566-73. doi: 10.1016/j.tig.2012.06.004. Epub 2012 Jul 22.
7.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
8.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
9.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
10.	SMPDB Annotation Import Pipeline	Pipeline to import SMPDB annotations from SMPDB into RGD
11.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
12.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
13.	Comprehensive gene review and curation	RGD comprehensive gene curation
14.	The multi-replication protein A (RPA) system--a new perspective.	Sakaguchi K, etal., FEBS J. 2009 Feb;276(4):943-63. doi: 10.1111/j.1742-4658.2008.06841.x. Epub 2009 Jan 12.
15.	Analysis of a human DNA excision repair gene involved in group A xeroderma pigmentosum and containing a zinc-finger domain.	Tanaka K, etal., Nature. 1990 Nov 1;348(6296):73-6.
16.	Immunohistochemical analysis of nucleotide excision repair factors XPA and XPB in adult rat brain.	Yang SZ, etal., Anat Rec (Hoboken). 2008 Jul;291(7):775-80. doi: 10.1002/ar.20713.

Additional References at PubMed

PMID:1601884	PMID:7700386	PMID:8197175	PMID:9661901	PMID:10843671	PMID:11005836	PMID:11408355	PMID:11950998	PMID:12509265	PMID:12815074	PMID:17720715	PMID:18443001
PMID:18979173	PMID:20539233	PMID:21148310	PMID:22323595	PMID:25907855	PMID:26493720	PMID:28056182

Genomics

Comparative Map Data

Xpa
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	5	60,431,673 - 60,476,438 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	60,431,673 - 60,475,726 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	62,404,102 - 62,448,198 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	5	64,223,605 - 64,267,701 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	5	64,192,858 - 64,236,954 (-)	NCBI	Rnor_WKY
Rnor_6.0	5	61,749,767 - 61,793,641 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	61,749,767 - 61,792,928 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	66,266,229 - 66,310,103 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	62,706,719 - 62,750,771 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	5	62,726,371 - 62,750,949 (-)	NCBI
Celera	5	58,992,396 - 59,036,208 (-)	NCBI		Celera
Cytogenetic Map	5	q22	NCBI

XPA
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	97,654,398 - 97,697,340 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	9	97,674,909 - 97,697,340 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	9	100,437,191 - 100,459,622 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	99,477,012 - 99,499,512 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	9	97,516,746 - 97,539,194	NCBI
Celera	9	70,951,417 - 70,973,928 (-)	NCBI		Celera
Cytogenetic Map	9	q22.33	NCBI
HuRef	9	70,038,231 - 70,060,725 (-)	NCBI		HuRef
CHM1_1	9	100,583,626 - 100,606,139 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	9	109,826,339 - 109,869,281 (-)	NCBI		T2T-CHM13v2.0

Xpa
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	46,175,222 - 46,196,345 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	46,155,347 - 46,196,311 (-)	Ensembl		GRCm39 Ensembl
GRCm38	4	46,175,220 - 46,196,344 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	46,155,347 - 46,196,311 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	46,188,094 - 46,209,183 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	46,196,339 - 46,217,411 (-)	NCBI		MGSCv36	mm8
Celera	4	46,197,357 - 46,218,441 (-)	NCBI		Celera
Cytogenetic Map	4	B1	NCBI
cM Map	4	24.49	NCBI

Xpa
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955419	27,751,043 - 27,774,917 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955419	27,751,042 - 27,774,917 (+)	NCBI	ChiLan1.0	ChiLan1.0

XPA
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1	9	41,762,094 - 41,825,789 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	9	68,726,723 - 68,788,049 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	9	96,866,303 - 96,909,260 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	9	96,886,795 - 96,909,254 (-)	Ensembl	panpan1.1		panPan2

XPA
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	11	54,976,978 - 54,996,140 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	11	54,976,976 - 54,996,065 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	11	53,406,654 - 53,430,263 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	11	56,085,046 - 56,108,618 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	11	56,088,588 - 56,108,630 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	11	54,581,396 - 54,605,007 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	11	54,611,286 - 54,634,866 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	11	55,307,954 - 55,331,573 (-)	NCBI		UU_Cfam_GSD_1.0

Xpa
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	169,920,223 - 169,945,978 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936524	6,465,104 - 6,493,610 (-)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936524	6,467,365 - 6,493,556 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

XPA
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	239,532,272 - 239,568,570 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	239,532,331 - 239,568,589 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	267,660,926 - 267,694,917 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

XPA
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	41,711,872 - 41,735,024 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	12	41,711,943 - 41,725,698 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	38,764,911 - 38,788,051 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Xpa
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624825	3,137,823 - 3,162,294 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624825	3,138,386 - 3,162,774 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Xpa
262 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	150
Count of miRNA genes:	114
Interacting mature miRNAs:	124
Transcripts:	ENSRNOT00000064685
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1331756	Rf34	Renal function QTL 34	4.16275		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	5	1	90450412	Rat
70212	Niddm25	Non-insulin dependent diabetes mellitus QTL 25	3.54		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	1	131345958	Rat
1331771	Rf35	Renal function QTL 35	4.36965		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	5	729470	86724018	Rat
1576314	Eutr1	Estrogen induced uterine response QTL 1			uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	2138965	166875058	Rat
8662454	Vetf3	Vascular elastic tissue fragility QTL 3	27.4		artery integrity trait (VT:0010639)	number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)	5	2282226	69540447	Rat
7394712	Emca13	Estrogen-induced mammary cancer QTL 13			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	9823266	99753708	Rat
634305	Mamtr1	Mammary tumor resistance QTL 1		0.0001	mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	12789751	113558310	Rat
1600358	Mamtr5	Mammary tumor resistance QTL 5			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	18873947	63873947	Rat
1358353	Srcrtb2	Stress Responsive Cort Basal QTL 2	3.48	0.003	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	5	18873947	74251464	Rat
8552954	Pigfal14	Plasma insulin-like growth factor 1 level QTL 14	9		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	21226744	66226744	Rat
1578767	Stresp17	Stress response QTL 17	4.3	0.01	blood aldosterone amount (VT:0005346)	plasma aldosterone level (CMO:0000551)	5	27955440	72955440	Rat
1578776	Stresp18	Stress response QTL 18	2.9		thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	5	27955440	72955440	Rat
6903292	Stl28	Serum triglyceride level QTL 28	2.6	0.0073	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	5	28515489	73515489	Rat
6903306	Scl35	Serum cholesterol QTL 35	2.6	0.0073	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	28515489	73515489	Rat
2290448	Scl54	Serum cholesterol level QTL 54	2.93		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	31663789	131345958	Rat
1598807	Glom12	Glomerulus QTL 12	2.7		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	5	33215665	78215665	Rat
1298067	Scl15	Serum cholesterol level QTL 15	4.8	0.001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	33215665	78215665	Rat
1302786	Kidm8	Kidney mass QTL 8	28.15		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	5	33215665	78215665	Rat
1576317	Eutr2	Estrogen induced uterine response QTL 2		0.01	uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	34730116	104251008	Rat
2316959	Gluco59	Glucose level QTL 59	4.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	34944474	113558310	Rat
1641922	Alcrsp8	Alcohol response QTL 8			alcohol metabolism trait (VT:0015089)	blood ethanol level (CMO:0000535)	5	35189153	68564008	Rat
1641912	Alcrsp18	Alcohol response QTL 18			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	5	35189153	141643988	Rat
1549845	Scl44	Serum cholesterol level QTL 44	6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	40128307	148607290	Rat
1331773	Scl26	Serum cholesterol level QTL 26	3.065		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	43726656	86724018	Rat
1331801	Rf33	Renal function QTL 33	4.149		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	5	43726656	129132602	Rat
1578766	Tcas11	Tongue tumor susceptibility QTL 11	4.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	5	46711509	161317411	Rat
1300115	Hrtrt7	Heart rate QTL 7	2.76		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	5	47869062	90099692	Rat
9589025	Epfw7	Epididymal fat weight QTL 7	20.66	0.001	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	5	49463600	94463600	Rat
7411561	Bw134	Body weight QTL 134	24	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	49463600	94463600	Rat
1576312	Emca8	Estrogen-induced mammary cancer QTL 8	4.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	50328551	141643988	Rat
2303615	Vencon7	Ventilatory control QTL 7		0.001	respiration trait (VT:0001943)	respiration rate (CMO:0000289)	5	50983895	95983895	Rat
2303574	Gluco42	Glucose level QTL 42	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	53496719	98496719	Rat
61359	Eaex	Experimental allergic encephalomyelitis QTL x	3		nervous system integrity trait (VT:0010566)	post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)	5	55715622	100715622	Rat
70189	Mcs5	Mammary carcinoma susceptibility QTL 5	10.51		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	55805606	132207589	Rat
1358895	Bp254	Blood pressure QTL 254	3.6	0.0003	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	5	58829236	128034027	Rat
61426	Scl2	Serum cholesterol level QTL 2	7.3	0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	59793399	143070159	Rat
2316954	Rf57	Renal function QTL 57	0		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	5	59793528	90450144	Rat
2316957	Pur21	Proteinuria QTL 21	6.2		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	5	59793528	113558156	Rat
61386	Bp49	Blood pressure QTL 49	16.6		cerebrum integrity trait (VT:0010549)	brain infarction volume (CMO:0001013)	5	60293434	98603051	Rat
61393	Bp7	Blood pressure QTL 7	4.5	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	60293434	161481680	Rat

Markers in Region

RH130418

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	60,448,117 - 60,448,322 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	61,766,212 - 61,766,416	NCBI	Rnor6.0
Rnor_5.0	5	66,282,674 - 66,282,878	UniSTS	Rnor5.0
RGSC_v3.4	5	62,723,164 - 62,723,368	UniSTS	RGSC3.4
Celera	5	59,008,841 - 59,009,045	UniSTS
RH 3.4 Map	5	381.7	UniSTS
Cytogenetic Map	5	q22	UniSTS

RH132739

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	60,448,546 - 60,448,738 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	61,766,641 - 61,766,832	NCBI	Rnor6.0
Rnor_5.0	5	66,283,103 - 66,283,294	UniSTS	Rnor5.0
RGSC_v3.4	5	62,723,593 - 62,723,784	UniSTS	RGSC3.4
Celera	5	59,009,270 - 59,009,461	UniSTS
RH 3.4 Map	5	379.2	UniSTS
Cytogenetic Map	5	q22	UniSTS

BE108357

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	60,448,117 - 60,448,273 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	61,766,212 - 61,766,367	NCBI	Rnor6.0
Rnor_5.0	5	66,282,674 - 66,282,829	UniSTS	Rnor5.0
RGSC_v3.4	5	62,723,164 - 62,723,319	UniSTS	RGSC3.4
Celera	5	59,008,841 - 59,008,996	UniSTS
RH 3.4 Map	5	389.2	UniSTS
Cytogenetic Map	5	q22	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	1		4		6				4		4	2
Low	2	43	53	41	13	41	8	11	70	35	37	9	8
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001106656	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001399041	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006238035	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006238036	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008763697	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017593241	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039109456	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039109457	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039109459	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC126894	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473962	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000161	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000064685 ⟹ ENSRNOP00000059280

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	60,431,673 - 60,475,726 (-)	Ensembl
Rnor_6.0 Ensembl	5	61,749,767 - 61,792,928 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000108242 ⟹ ENSRNOP00000080582

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	60,451,144 - 60,475,726 (-)	Ensembl

RefSeq Acc Id:

NM_001106656 ⟹ NP_001100126

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	60,431,673 - 60,475,726 (-)	NCBI
Rnor_6.0	5	61,749,767 - 61,792,928 (-)	NCBI
Rnor_5.0	5	66,266,229 - 66,310,103 (-)	NCBI
RGSC_v3.4	5	62,706,719 - 62,750,771 (-)	RGD
Celera	5	58,992,396 - 59,036,208 (-)	RGD

Sequence:

show sequence

GGCTGCTAGAAACTGTTAGTGATTCGCGTGCGCTGTTTACGGAGTGTGTTAGCGATGGCGACAG
CGGAGGAGAAGCGGACGTCACCGGAGCCCGCGGCCGCGGAGAAGCCCGCGGAGCTGCCGGCCGC
CGTACGCGCGAGCGTGGAGCGGAAGCGGCAGCGGGCGCTGATGCTGCGCCAGGCCCGGCTGGCG
GCGCGGCCGTACCCGGCGGCGGCGGCCACCGGAGGCGTGACCAGCATAAAAGCAGCTCCCAAAG
TGATTGACACCAAAGGTGGCTTCATTTTAGAAGAGGAGGAAGAAGAGAAACACAAGATTGGAGA
TGTTGTTCATGAACCAGGGCCCGTCATGGAGTTTGATTACACCATCTGTGAAGAGTGTGGGAAA
GAGTTCATGGACTCGTATCTTATGAACCACTTCGATTTGCCAACATGCGATAGCTGCAGAGATG
CTGATGATAAACACAAGCTTATAACCAAAACAGAAGCCAAGCAAGAATACCTTCTGAAGGACTG
TGATTTAGAGAAAAGAGAGCCAGCGCTCAGGTTCATTGTGAAGAAGAACCCTCGCCATTCACAG
TGGGGCGATATGAAGCTCTACTTAAAGCTACAGGTTGTAAAGCGGGCTCTTGAAGTTTGGGGTA
GCCAGGAAGCTCTGGAAGATGCAAAGGAAGTGAGGCAGGAAAACCGAGAAAAAATGAAGCAGAA
GAAGTTTGATAAAAAAGTAAAAGTAGGATTTTATGATGCAATGAAGATTCTCCTCTATGACAAA
CCTCTCTACTGAATGGCTCCCTGGCATAACAGGACCCTGGAAAGAAAGCCAAATGTACTCATAT
AAGGAGCCACAAAACAGATTTATTTCTTTTATTCAATAAATACTTGAATAAAATAGCTCTGAAC
TACTGTGTTAGATAACTACACAGAATCAAGTGTGCTGTCCTCCTGAGAGAGGCCATACAGACAC
CAGAGCCACTTTACAAATCTGTTTTTTTAATTTAAAAAACTCTCTCTGTCTGTCCATCTATCAT
CTTCCAATCATTGTGTATGGGTGTCTGCCATGGTGCATTTGTGGAGATCAGAGAACAATTCGTG
GGGAACCAGTGCTCTCTCTACTATGGGGGCCTGGTATCAGGTTTCACAGCCCCATGCTTTTATC
CAGGGAAGCACGGCCCACTTTTTAAATTTAATAAACACTTTAAAAAGACACT

hide sequence

RefSeq Acc Id:

XM_006238035 ⟹ XP_006238097

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	60,451,144 - 60,475,494 (-)	NCBI
Rnor_6.0	5	61,769,240 - 61,792,696 (-)	NCBI
Rnor_5.0	5	66,266,229 - 66,310,103 (-)	NCBI

Sequence:

show sequence

GCCCCCTACGGGCGCGCGCATAGCCTTCATCCGGCGGGTTTGGGACCGCATCCCTAGCCTTCCC
ACTGCGTCTTGGCAGCCGACTCCAGCTCGGTGTGCGGGAACAGCTGTGCATGCCCGTATCTCCG
CGGTCCCAGGCCATCCCTGTCGTGCCCTGTGCTTGGCACATCTATGGTGCAGAACTTTCAGTCT
TGCAGCCATTAAACAAGCCTGCACCGTCTCCCACTCCAGCACCCAGTAGAACTGCCCCAGACCC
AGTCTTTTACATGCGCCGCGCCTGCTTTCCAGCGCAAAGTAGATTAACACCCGCAGAGCCCCGC
ACTTTGGAGTTGACACGGCTTGGCGTGACCAGCATAAAAGCAGCTCCCAAAGTGATTGACACCA
AAGGTGGCTTCATTTTAGAAGAGGAGGAAGAAGAGAAACACAAGATTGGAGATGTTGTTCATGA
ACCAGGGCCCGTCATGGAGTTTGATTACACCATCTGTGAAGAGTGTGGGAAAGAGTTCATGGAC
TCGTATCTTATGAACCACTTCGATTTGCCAACATGCGATAGCTGCAGAGATGCTGATGATAAAC
ACAAGCTTATAACCAAAACAGAAGCCAAGCAAGAATACCTTCTGAAGGACTGTGATTTAGAGAA
AAGAGAGCCAGCGCTCAGGTTCATTGTGAAGAAGAACCCTCGCCATTCACAGTGGGGCGATATG
AAGCTCTACTTAAAGCTACAGGTTGTAAAGCGGGCTCTTGAAGTTTGGGGTAGCCAGGAAGCTC
TGGAAGATGCAAAGGAAGTGAGGCAGGAAAACCGAGAAAAAATGAAGCAGAAGAAGTTTGATAA
AAAAGTAAAAGAACTGCGGCGAGCAGTAAGAAGCAGTGTATGGAAAAGAGAAACAACTGCTCAC
CAACATGAATATGGACCAGAGGAACATTTAGAAGAGGACATGTACCGCAAGACTTGTACCTTGT
GTGGCCACGAACTGACATATGAAAAAATGTGACTTTTAAAACAAATTTATAGACAAATAAAGAC
CTTGTTCAAAAGTTC

hide sequence

RefSeq Acc Id:

XM_006238036 ⟹ XP_006238098

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	60,451,144 - 60,476,438 (-)	NCBI
Rnor_6.0	5	61,769,240 - 61,793,641 (-)	NCBI
Rnor_5.0	5	66,266,229 - 66,310,103 (-)	NCBI

Sequence:

show sequence

TTGTATGGTAATACTATGTATGCTTTGTTTAGCCATTCAAAAGTTGATGGGCATTCGGGCAGTT
TTTAGCTTTTGGTTATTGGGAGCAGTGGTGCTATGAACATGCCCCCTGGCACAGCAGTCCACAA
TACAGGGGGGAGTACACTGTGCATTTTTTCTCCCAAAGCCATCTTGCCGCACAGGGGGAGTTAC
TGCCACATCACATTCCCCCACTGGATGGAAGGTTTTCTGAAACCAGGGGTTTCGTTTCTATACA
GGATGGCCAGTCTGTTGTCATGGGGCTGTCTGGCTTTCCACGTGGTTTCGACTTTGGCTCTCTA
CCCACGCCCCGCAGCTGGGTTTGGAGCTCATACTGCGTCCCACTTCTCTCTGTTGTCTTCCTGT
TTTCTCATGCTTTTTAGCTGTCACACAGACATTCTTTCTTGATGCTCTTTTCCATGTTCTCTTT
ACTTTTGGACACAGGGTCTCATGTAGCTCAGGCTGGCCTGGAACATACTGTGTAGACAAGGATG
ACCTTAAAGTCCTGATCCTCCAACAATGCTTAGTCCAGGTTATGTGTCAACAAGTGCTTTACCA
TCTCTTCCGCCACCACTCCTCAACTGCGCAGGCGCAATGCCTCTCCCATCGTCTTTTCCGCCAC
TACTCCTAGACTGCGCAGGCGCAATTCTTTTCTTTTCTTTCTTTTTTAAATGCCTGATAGTGGA
GGTACTTGTGGCTGCTAGAAACTGTTAGTGATTCGCGTGCGCTGTTTACGGAGTGTGTTAGCGA
TGGCGACAGCGGAGGAGAAGCGGACGTCACCGGAGCCCGCGGCCGCGGAGAAGCCCGCGGAGCT
GCCGGCCGCCGTACGCGCGAGCGTGGAGCGGAAGCGGCAGCGGGCGCTGATGCTGCGCCAGGCC
CGGCTGGCGGCGCGGCCGTACCCGGCGGCGGCGGCCACCGGAGGCGTGACCAGCATAAAAGCAG
CTCCCAAAGTGATTGACACCAAAGGTGGCTTCATTTTAGAAGAGGAGGAAGAAGAGAAACACAA
GATTGGAGATGTTGTTCATGAACCAGGGCCCGTCATGGAGTTTGATTACACCATCTGTGAAGAG
TGTGGGAAAGAGTTCATGGACTCGTATCTTATGAACCACTTCGATTTGCCAACATGCGATAGCT
GCAGAGATGCTGATGATAAACACAAGCTTATAACCAAAACAGAAGCCAAGCAAGAATACCTTCT
GAAGGACTGTGATTTAGAGAAAAGAGAGCCAGCGCTCAGGTTCATTGTGAAGAAGAACCCTCGC
CATTCACAGTGGGGCGATATGAAGCTCTACTTAAAGCTACAGGTTGTAAAGCGGGCTCTTGAAG
TTTGGGGTAGCCAGGAAGCTCTGGAAGATGCAAAGGAAGTGAGGCAGGAAAACCGAGAAAAAAT
GAAGCAGAAGAAGTTTGATAAAAAAGTAAAAGAACTGCGGCGAGCAGTAAGAAGCAGTGTATGG
AAAAGAGAAACAACTGCTCACCAACATGAATATGGACCAGAGGAACATTTAGAAGAGGACATGT
ACCGCAAGACTTGTACCTTGTGTGGCCACGAACTGACATATGAAAAAATGTGACTTTTAAAACA
AATTTATAGACAAATAAAGACCTTGTTCAAAAGTTC

hide sequence

RefSeq Acc Id:

XM_008763697 ⟹ XP_008761919

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	60,456,298 - 60,475,494 (-)	NCBI
Rnor_6.0	5	61,769,241 - 61,792,696 (-)	NCBI

Sequence:

show sequence

GCCCCCTACGGGCGCGCGCATAGCCTTCATCCGGCGGGTTTGGGACCGCATCCCTAGCCTTCCC
ACTGCGTCTTGGCAGCCGACTCCAGCTCGGTGTGCGGGAACAGCTGTGCATGCCCGTATCTCCG
CGGTCCCAGGCCATCCCTGTCGTGCCCTGTGCTTGGCACATCTATGGTGCAGAACTTTCAGTCT
TGCAGCCATTAAACAAGCCTGCACCGTCTCCCACTCCAGCACCCAGTAGAACTGCCCCAGACCC
AGTCTTTTACATGCGCCGCGCCTGCTTTCCAGCGCAAAGTAGATTAACACCCGCAGAGCCCCGC
ACTTTGGAGTTGACACGGCTTGGCGTGACCAGCATAAAAGCAGCTCCCAAAGTGATTGACACCA
AAGGTGGCTTCATTTTAGAAGAGGAGGAAGAAGAGAAACACAAGATTGGAGATGTTGTTCATGA
ACCAGGGCCCGTCATGGAGTTTGATTACACCATCTGTGAAGAGTGTGGGAAAGAGTTCATGGAC
TCGTATCTTATGAACCACTTCGATTTGCCAACATGCGATAGCTGCAGAGATGCTGATGATAAAC
ACAAGCTTATAACCAAAACAGAAGCCAAGCAAGAATACCTTCTGAAGGACTGTGATTTAGAGAA
AAGAGAGCCAGCGCTCAGGTTCATTGTGAAGAAGAACCCTCGCCATTCACAGTGGGGCGATATG
AAGCTCTACTTAAAGCTACAGGTGTCTAGTAAGCTGGCCGCGGGGATGTCCAACTTTAGTGAAC
TTCCAGCATAACCAACTAGCGGTTGTAAAGCGGGCTCTTGAAGTTTGGGGTAGCCAGGAAGCTC
TGGAAGATGCAAAGGAAGTGAGGCAGGAAAACCGAGAAAAAATGAAGCAGAAGAAGTTTGATAA
AAAAGTAAAAGGTGAGTGGTCGGATTTCCTATGCTTGTCTTACCACGGAGCACCAAGCATCCAG
TCCGTCCTGTTTCTAGACATGGGTGTGCCTTTTCTATAGGTAAGAAGACTGGGCTGGAACTCTG
GCCTCAGTGCCTTGGTGTGTGAGGCTCGGTTCAAACCTCACAGTACTTCATTGCTAAAGGCCAT
TGTTTTCATGTGAGTCATTGTGCAGCAGTGGTGTCGGGTGGGGATGGTGGGGTGGGGATGGTGG
GATCAGGCGTCCATCAGGATGTGTGGTCTGCAGCGTTTAAGACAGCAGTGACATACAATAACAA
GATCCCCAACAGCCACCCTCTCCTTGCTTGGAACAAAACCATGAACTATGTAGCCATTGGATTC
AGTAGCTAGAAGGAATGACCAGTATCAGTCAGTCTGAATGCTTTTATTTAAATGAGAAAACCAG
AAGGATGAGGGGCTTCTCTGCATGTCGTGACAGTTGTCAGGTTCTCTTCCCGAGTCTTCATCTG
CGTTATACACATACACATACACATACACATACACATACACATACATATACACATACACATACAT
ATACACATACATATACACATACACATACACATACACATACACATACATATACACACACATACAT
ATACATATAGTTGTTCTTCCATTTGTGCCTCTGTCTCCATACAAACTCTCCACTCCCTGGTGAT
TCTGTCTCTGCTTCCGTTGTTCACGTGTGTATCCATGAGTGAACCATGAGTCTGTCCATCCATG
CACACATCTAGTTTTACCGTGTGCCAAGCACTGTGCTAACCAGGGTGCTGGATTGAGTGTGAGG
AAGGAGGAGACACTAACCCAGAGTGTGCTGGGGGAGCCACAGCAGGGTGAACACAGACTGTGGT
GAGAACACTCAGGGCTGTAAACACAATGCACAGAGAAGAGTCTTCAGGAAGTAGCCAGTGCAGG
CCCTTCACGTGGTGGCTGTGTAGAGTCCCCGTGTGCTGCACATTGTGTCTGGGTAATACGCATC
CTGTATATAGGCTGTGTCATACATTTACTTGATCCATTTTTTTTTTTTTTTGGTTCTTTTTTTC
GGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGCAAGCGCTCTACCACTGAGCTAAAT
CCCCAACCCCTTGATCCATTTCATAACAGTATTCTAGCCATATTAATTTTTCTTAGGATTTTAC
AATTTAGAAGAGATTCTGTGGGTGAATGGGATAGCCCACACGCTTAAACAAAAAGGGAGTGGTC
CTTGGCTCAAAAAAAAAAAAAAAAAAAAAAACCAAAACCAAAAACAAAAAAAACCCCAAAACCC
CACCAAACCTAGCTAAACAATAACAGCAAAAAGCCAACCAATCAGGCAAGCCCTTCTCCATGTG
CAGACTCTAACATTCTAAAACAAAACTGGCAGCATCCAGACAGTCTCACCGAAACCCCTCTGCA
CAAGCAACCTCATTCCTGAGCAGGCAGGGAGCCCACAAGGAAGACTTAGCAGACTACCACAGGA
GAGTATTTCATTAATTTGTCCAGGCCGCCACTCAGCTGTGCCCAGCATTCCGATGTCAGCAAAG
ACTCACTGACAAGTTCTTCCTCTTGAGCTGGCCTTTCTCTAATTTCTCCTAATGCTTAGCACTA
ACCCCTCCCTCTAACAGCAGAGTTGCTATGGTGACAGAGCAGCGCAAAGGCATATTAAAGAACA
GGTGTGAAAGGCAGGCTCCAGATTACCTATCTACTCTGTGCAGGCGTGTGCACACGTGTGCGTG
TGTGCCTGCCCTGTGTGCACATGCACACATCTGTCTTGCCTTTGTAATAGGATCTCCTTTCACT
GAACCTAAAGCTGGCCTTTTGGCTAGGGTGGCTGGCCTGTGAGCTGTGCTCCCCTTCCGTCCCC
CAGGGCTGAGGTTACAGCTAGCTGTGCTCCACACTGTTTGGATTGGCTTATTCTCCCCCTTTTT
AAAAAACTTTTTTGGTGCAGTTTTGGTGCGGGGCGGGGGTGTTCAAACTCAGTTCCTTATCCTG
GCACTTTTACTCTCTGAGCTGGTGGGGTCCTCTCAGGTCATGGTATTGCAAGCCATCTCTGTAG
CTCAGGTCCAGGGTTTTAACACTACTAGACATAACCGGACCCTTCCCTCAGACGATACTCTGGT
GTAGATGACATCATGTAATGGCAACTGAATTCCTAAACTTGTCTAGAATAACATTACGAGACAC
ACTTAATTTCTTGCCTTTCTATATGACTATTAGGATATCTACATCTTAATACAAGTTTTTCTCA
ATTTTCAAAATATGAACTCAGTTGGTGTTTACTTTTGATCACTGTATTAGCCCAAACTACCACA
TAACAAACTTCATGGATTTTCCTTATGCCTGTTCCAGTCCACACTGAGTTTCTTGAGGATTTCT
TTGAGTTCATTTGTTATTTGGGTGAAACATGCTTTTCAAGAAAATGTTTGAAGTGGTTGCACGA
GTGCCTGCCTGTCATTATCTGCTTTTGCTTTTGAGCATGAGTTCTGGGTGGTCCGAGAGTGTCC
CTCACCCCTTGGGGTGCTCAGTGTGCAGAGGTCAGTGTGACGCCCAGTTTAACTGTGGCTCTTG
TTGATTCGCTCACTCTAGTTCTTGGTGGATATGTTCCTGTCCTGACTAGGCCAGAGGGCTGAGT
GGAGTAGACTGTAGAGTAGAAACGAGGCTGACTGTACAGTTTGCTCAGAACAGAGAGGAGTCAA
AGCAAGTCTAAAGGCTTTTTAGTTGGAAAGAACTGGAGAATTGGAACAATGGTTTCCTCTTGAT
GCACAGCGAAGCCTTCTTTATGGGAAGGTAAGCAATTACATTCACCTGCTCTCAACATTTTTTT
ATGGTAGCAGTTATAACGTGGAGTTTGCTACAGAAAAGGATGCGACTACTGGGAAGTGTGCACA
GACAAGGCTCCACATCTCCGAGCCAGAGGGTAACTGGATTTCCAAGGGCAATGTCACCCAGTAG
CAGGACAAGAACCCTGAACCGGTGTAGAGCACAGAACACTTGGTTTGCAGGCTTTCTTGCCTCA
AATTAGGTGGGAGTGTGGGTGTTTCTTTTATGTTACATGCGCTTAGTTCTAGAAGTTTTTCTGT
TAAAAGGCTAGTCAGCAGACTTCATTAGTATGAATGCCCCCATCTCTGCAAGGGGCAGGTAAGG
ACATCATCCCATTTTGAGGTCCCTTCTGAATTTCTAGACAGTGCACACTGTTCTGTGGATATGT
TGTGGGCCTTCTCAGAGGAATCTGTGGTGTTTAAGTCCATCCTGTTTAATGTCTTTTTCTGTAA
TGTTTCCTCCAGGTGACAAGGGACCACCTGCGCCACCTGCTTTGCTATCCAGCGTGTAGGTGTT
GGGTCTCTCTCAACTAGCTCTGTAGTAGGTTTACCTCAGAAGCAGCAGCGCTCGGCTCCTTTGC
CTGCTGTTCTCTCTTGCAACCTGTAGTTACTAAAAACAAGCTTTGAAGTGCTACTGAGTCTTCA
CTGCAAAGCATTTTGGGGAAATCTCCCTGGCTGGGCATTCTAAGCAATTTCTCAGGCTCTCAGT
AGCAAGATGACTACCCGTTCCCAGGAGAGGTAGTCTCTGGGCAGCAGCTGTCTGGGGCTCCAGT
TCTGTGCAGCATCCTGGCTTCTCTCCCCCAGCTATGCTAGACTTGTCTCCTGTATCACTGTCAT
ATACCCTAACATGTGTAGCTCAGACGCCACAGAGGACAGTTGACTGCTACTGTCCTGAGTGTTG
TGGAACCAACAAACCTTCTTTAAAAGATTTTTTGGGGCCAGTGAGATGGCTCAGTGGGTAAATG
TGTAATTCCCTGACTCTGGTTCCCTGAAGAACCCACTTGGTGGCAGGAGAGAACATACTGCTGC
CAAGTTGTCATCTGACTTCTACCACGTGCACCATTGTGATCCATGAGGCACATGTGTACATACA
GGGGGCTGAGTGTTGGCATTTGGCCATTTCCAAACTTTCACACTTGCATATACTTTATTAACCA
TGAGTGATTTGCCAAGACCGATTCCTTCAAACCTTTTTGTTTCTGAGAACTTTTCTTTGTAACT
AACAGCTAATCATAACTGAGGCACTTGCGCTGGGTTATCACCTTTAATGTGGCCCCTCAGCCCT
CCTCTTGCCTCTGGGCTGCTCAGCACCTTGCTTCTGCTCCATGAGACTCAGGCTGATTGTGAGA
GGAATACATTTTACTGAAGCCCTTCCTTTCTGTACACAGTGTACACAGTAGCACCCTTTTTACT
CCATGGTTCTTGTGTATGTAGACGTTTTATCTGAGCCAGGTTTTTGTGGCATACAAATAGGGGT
TATTTGTTTGCATTGCAAAACCTTCCCTTGGGCTCTATTCTTGTTTTCTTGGACTTGTAACAAT
CTTCCTGCCTCTGCCCCCCAAGTGCTGGATTATAGATGTCCATCTCTCTGCCTGTTTTATTTTA
AAATAGGAACTATATAGCTGGAATGTGCTATGTAGACCAGGCTGGCCTCCAATTCACAGAGGGT
CACCTGCATCTGCCTGCCAGGTGCTGAGACTAAAGGCGTGGGCTCTCATGCCTGGCCTTTGTTT
TCGTTTGTAGAGCATCAGTTGGACTGGCCTGTGAATTCTTCTCAGGTCATGGGAGGGCAAGCTC
CTTCTGGCACTCTTTATTTGGATGCTCACATTGTCCCAGCTTTGGCCAGTGGCCAGCAGGGACC
TTTAAAGCTGGTTCCTGTCTTTTCCTAAAGCCCTTTTTATTTGGAAGACTTTCAGAGTTGAACT
TCATGCTTGACAACGTAATAAACAATTATTTGCACAGACGAAGCAGGTCTGCCAAGTGTGTAAC
CAGCTGTTAGAATGAAAGAAAACCATTATATACACAAGTATCAATGAAAGCCTTATTGGACTTA
TTCTGCATTAGGCTGAAAAGCTTCCCCTTCCCCCTTAGAACTGCGGCGAGCAGTAAGAAGCAGT
GTATGGAAAAGAGAAACAACTGCTCACCAACATGAATATGGACCAGAGGAACATTTAGAAGAGG
ACATGTACCGCAAGACTTGTACCTTGTGTGGCCACGAACTGACATATGAAAAAATGTGACTTTT
AAAACAAATTTATAGACAAATAAAGACCTTGTTCAAAAGTT

hide sequence

RefSeq Acc Id:

XM_017593241 ⟹ XP_017448730

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	60,451,375 - 60,475,494 (-)	NCBI
Rnor_6.0	5	61,769,241 - 61,792,696 (-)	NCBI

Sequence:

show sequence

GCCCCCTACGGGCGCGCGCATAGCCTTCATCCGGCGGGTTTGGGACCGCATCCCTAGCCTTCCC
ACTGCGTCTTGGCAGCCGACTCCAGCTCGGTGTGCGGGAACAGCTGTGCATGCCCGTATCTCCG
CGGTCCCAGGCCATCCCTGTCGTGCCCTGTGCTTGGCACATCTATGGTGCAGAACTTTCAGTCT
TGCAGCCATTAAACAAGCCTGCACCGTCTCCCACTCCAGCACCCAGTAGAACTGCCCCAGACCC
AGTCTTTTACATGCGCCGCGCCTGCTTTCCAGCGCAAAGTAGATTAACACCCGCAGAGCCCCGC
ACTTTGGAGTTGACACGGCTTGGCGTGACCAGCATAAAAGCAGCTCCCAAAGTGATTGACACCA
AAGGTGGCTTCATTTTAGAAGAGGAGGAAGAAGAGAAACACAAGATTGGAGATGTTGTTCATGA
ACCAGGGCCCGTCATGGAGTTTGATTACACCATCTGTGAAGAGTGTGGGAAAGAGTTCATGGAC
TCGTATCTTATGAACCACTTCGATTTGCCAACATGCGATAGCTGCAGAGATGCTGATGATAAAC
ACAAGCTTATAACCAAAACAGAAGCCAAGCAAGAATACCTTCTGAAGGACTGTGATTTAGAGAA
AAGAGAGCCAGCGCTCAGGTTCATTGTGAAGAAGAACCCTCGCCATTCACAGTGGGGCGATATG
AAGCTCTACTTAAAGCTACAGGTTGTAAAGCGGGCTCTTGAAGTTTGGGGTAGCCAGGAAGCTC
TGGAAGATGCAAAGGAAGTGAGGCAGGAAAACCGAGAAAAAATGAAGCAGAAGAAGTTTGATAA
AAAAGTAAAAGGTGACAAGGGACCACCTGCGCCACCTGCTTTGCTATCCAGCGTGTAGGTGTTG
GGTCTCTCTCAACTAGCTCTGTAGTAGGTTTACCTCAGAAGCAGCAGCGCTCGGCTCCTTTGCC
TGCTGTTCTCTCTTGCAACCTGTAGTTACTAAAAACAAGCTTTGAAGTGCTACTGAGTCTTCAC
TGCAAAGCATTTTGGGGAAATCTCCCTGGCTGGGCATTCTAAGCAATTTCTCAGGCTCTCAGTA
GCAAGATGACTACCCGTTCCCAGGAGAGGTAGTCTCTGGGCAGCAGCTGTCTGGGGCTCCAGTT
CTGTGCAGCATCCTGGCTTCTCTCCCCCAGCTATGCTAGACTTGTCTCCTGTATCACTGTCATA
TACCCTAACATGTGTAGCTCAGACGCCACAGAGGACAGTTGACTGCTACTGTCCTGAGTGTTGT
GGAACCAACAAACCTTCTTTAAAAGATTTTTTGGGGCCAGTGAGATGGCTCAGTGGGTAAATGT
GTAATTCCCTGACTCTGGTTCCCTGAAGAACCCACTTGGTGGCAGGAGAGAACATACTGCTGCC
AAGTTGTCATCTGACTTCTACCACGTGCACCATTGTGATCCATGAGGCACATGTGTACATACAG
GGGGCTGAGTGTTGGCATTTGGCCATTTCCAAACTTTCACACTTGCATATACTTTATTAACCAT
GAGTGATTTGCCAAGACCGATTCCTTCAAACCTTTTTGTTTCTGAGAACTTTTCTTTGTAACTA
ACAGCTAATCATAACTGAGGCACTTGCGCTGGGTTATCACCTTTAATGTGGCCCCTCAGCCCTC
CTCTTGCCTCTGGGCTGCTCAGCACCTTGCTTCTGCTCCATGAGACTCAGGCTGATTGTGAGAG
GAATACATTTTACTGAAGCCCTTCCTTTCTGTACACAGTGTACACAGTAGCACCCTTTTTACTC
CATGGTTCTTGTGTATGTAGACGTTTTATCTGAGCCAGGTTTTTGTGGCATACAAATAGGGGTT
ATTTGTTTGCATTGCAAAACCTTCCCTTGGGCTCTATTCTTGTTTTCTTGGACTTGTAACAATC
TTCCTGCCTCTGCCCCCCAAGTGCTGGATTATAGATGTCCATCTCTCTGCCTGTTTTATTTTAA
AATAGGAACTATATAGCTGGAATGTGCTATGTAGACCAGGCTGGCCTCCAATTCACAGAGGGTC
ACCTGCATCTGCCTGCCAGGTGCTGAGACTAAAGGCGTGGGCTCTCATGCCTGGCCTTTGTTTT
CGTTTGTAGAGCATCAGTTGGACTGGCCTGTGAATTCTTCTCAGGTCATGGGAGGGCAAGCTCC
TTCTGGCACTCTTTATTTGGATGCTCACATTGTCCCAGCTTTGGCCAGTGGCCAGCAGGGACCT
TTAAAGCTGGTTCCTGTCTTTTCCTAAAGCCCTTTTTATTTGGAAGACTTTCAGAGTTGAACTT
CATGCTTGACAACGTAATAAACAATTATTTGCACAGACGAAGCAGGTCTGCCAAGTGTGTAACC
AGCTGTTAGAATGAAAGAAAACCATTATATACACAAGTATCAATGAAAGCCTTATTGGACTTAT
TCTGCATTAGGCTGAAAAGCTTCCCCTTCCCCCTTAGAACTGCGGCGAGCAGTAAGAAGCAGTG
TATGGAAAAGAGAAACAACTGCTCACCAACATGAATATGGACCAGAGGAACATTTAGAAGAGGA
CATGTACCGCAAGACTTGTACCTTGTGTGGCCACGAACTGACATATGAAAAAATGTGACTTTTA
AAACAAATTTATAGACAAATAAAGACCTTGTTCAAAAGTT

hide sequence

RefSeq Acc Id:

XM_039109456 ⟹ XP_038965384

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	60,434,389 - 60,475,494 (-)	NCBI

RefSeq Acc Id:

XM_039109457 ⟹ XP_038965385

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	60,451,198 - 60,475,494 (-)	NCBI

RefSeq Acc Id:

XM_039109459 ⟹ XP_038965387

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	60,456,298 - 60,475,494 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001100126	(Get FASTA)	NCBI Sequence Viewer
	NP_001385970	(Get FASTA)	NCBI Sequence Viewer
	XP_006238097	(Get FASTA)	NCBI Sequence Viewer
	XP_006238098	(Get FASTA)	NCBI Sequence Viewer
	XP_008761919	(Get FASTA)	NCBI Sequence Viewer
	XP_017448730	(Get FASTA)	NCBI Sequence Viewer
	XP_038965384	(Get FASTA)	NCBI Sequence Viewer
	XP_038965385	(Get FASTA)	NCBI Sequence Viewer
	XP_038965387	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL98832	(Get FASTA)	NCBI Sequence Viewer
	EDL98833	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001100126 ⟸ NM_001106656

- UniProtKB:

D4A981 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MATAEEKRTSPEPAAAEKPAELPAAVRASVERKRQRALMLRQARLAARPYPAAAATGGVTSIKA
APKVIDTKGGFILEEEEEEKHKIGDVVHEPGPVMEFDYTICEECGKEFMDSYLMNHFDLPTCDS
CRDADDKHKLITKTEAKQEYLLKDCDLEKREPALRFIVKKNPRHSQWGDMKLYLKLQVVKRALE
VWGSQEALEDAKEVRQENREKMKQKKFDKKVKVGFYDAMKILLYDKPLY

hide sequence

RefSeq Acc Id:

XP_006238098 ⟸ XM_006238036

- Peptide Label:

isoform X2

- Sequence:

show sequence

MATAEEKRTSPEPAAAEKPAELPAAVRASVERKRQRALMLRQARLAARPYPAAAATGGVTSIKA
APKVIDTKGGFILEEEEEEKHKIGDVVHEPGPVMEFDYTICEECGKEFMDSYLMNHFDLPTCDS
CRDADDKHKLITKTEAKQEYLLKDCDLEKREPALRFIVKKNPRHSQWGDMKLYLKLQVVKRALE
VWGSQEALEDAKEVRQENREKMKQKKFDKKVKELRRAVRSSVWKRETTAHQHEYGPEEHLEEDM
YRKTCTLCGHELTYEKM

hide sequence

RefSeq Acc Id:

XP_006238097 ⟸ XM_006238035

- Peptide Label:

isoform X1

- Sequence:

show sequence

MPVSPRSQAIPVVPCAWHIYGAELSVLQPLNKPAPSPTPAPSRTAPDPVFYMRRACFPAQSRLT
PAEPRTLELTRLGVTSIKAAPKVIDTKGGFILEEEEEEKHKIGDVVHEPGPVMEFDYTICEECG
KEFMDSYLMNHFDLPTCDSCRDADDKHKLITKTEAKQEYLLKDCDLEKREPALRFIVKKNPRHS
QWGDMKLYLKLQVVKRALEVWGSQEALEDAKEVRQENREKMKQKKFDKKVKELRRAVRSSVWKR
ETTAHQHEYGPEEHLEEDMYRKTCTLCGHELTYEKM

hide sequence

RefSeq Acc Id:

XP_008761919 ⟸ XM_008763697

- Peptide Label:

isoform X6

- Sequence:

show sequence

MPVSPRSQAIPVVPCAWHIYGAELSVLQPLNKPAPSPTPAPSRTAPDPVFYMRRACFPAQSRLT
PAEPRTLELTRLGVTSIKAAPKVIDTKGGFILEEEEEEKHKIGDVVHEPGPVMEFDYTICEECG
KEFMDSYLMNHFDLPTCDSCRDADDKHKLITKTEAKQEYLLKDCDLEKREPALRFIVKKNPRHS
QWGDMKLYLKLQVSSKLAAGMSNFSELPA

hide sequence

RefSeq Acc Id:

XP_017448730 ⟸ XM_017593241

- Peptide Label:

isoform X3

- Sequence:

show sequence

MPVSPRSQAIPVVPCAWHIYGAELSVLQPLNKPAPSPTPAPSRTAPDPVFYMRRACFPAQSRLT
PAEPRTLELTRLGVTSIKAAPKVIDTKGGFILEEEEEEKHKIGDVVHEPGPVMEFDYTICEECG
KEFMDSYLMNHFDLPTCDSCRDADDKHKLITKTEAKQEYLLKDCDLEKREPALRFIVKKNPRHS
QWGDMKLYLKLQVVKRALEVWGSQEALEDAKEVRQENREKMKQKKFDKKVKGDKGPPAPPALLS
SV

hide sequence

RefSeq Acc Id:

ENSRNOP00000059280 ⟸ ENSRNOT00000064685

RefSeq Acc Id:	XP_038965384 ⟸ XM_039109456
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038965385 ⟸ XM_039109457
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_038965387 ⟸ XM_039109459
- Peptide Label:	isoform X7

RefSeq Acc Id:

ENSRNOP00000080582 ⟸ ENSRNOT00000108242

Protein Domains

XPA C-terminal

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4A981-F1-model_v2	AlphaFold	D4A981	1-241	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13693711

Promoter ID:

EPDNEW_R4235

Type:

multiple initiation site

Name:

Xpa_1

Description:

XPA, DNA damage recognition and repair factor

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	5	61,792,953 - 61,793,013	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1308769	AgrOrtholog
BioCyc Gene	G2FUF-41414	BioCyc
Ensembl Genes	ENSRNOG00000009576	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000059280	ENTREZGENE
	ENSRNOP00000059280.1	UniProtKB/TrEMBL
	ENSRNOP00000080582	ENTREZGENE
	ENSRNOP00000080582.1	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000064685	ENTREZGENE
	ENSRNOT00000064685.2	UniProtKB/TrEMBL
	ENSRNOT00000108242	ENTREZGENE
	ENSRNOT00000108242.1	UniProtKB/TrEMBL
Gene3D-CATH	3.90.530.10	UniProtKB/TrEMBL
InterPro	DNA-bd_dom_put	UniProtKB/TrEMBL
	XPA	UniProtKB/TrEMBL
	XPA_C	UniProtKB/TrEMBL
	XPA_C_sf	UniProtKB/TrEMBL
	XPA_CS	UniProtKB/TrEMBL
	Znf_XPA_CS	UniProtKB/TrEMBL
KEGG Report	rno:298074	UniProtKB/TrEMBL
NCBI Gene	298074	ENTREZGENE
PANTHER	DNA REPAIR PROTEIN COMPLEMENTING XP-A CELLS	UniProtKB/TrEMBL
	PTHR10142	UniProtKB/TrEMBL
Pfam	XPA_C	UniProtKB/TrEMBL
	XPA_N	UniProtKB/TrEMBL
PhenoGen	Xpa	PhenoGen
PROSITE	XPA_1	UniProtKB/TrEMBL
	XPA_2	UniProtKB/TrEMBL
Superfamily-SCOP	Glucocorticoid receptor-like (DNA-binding domain)	UniProtKB/TrEMBL
	Putativ_DNA_bind	UniProtKB/TrEMBL
TIGRFAMs	rad14	UniProtKB/TrEMBL
UniProt	A0A8I6G6T5	ENTREZGENE, UniProtKB/TrEMBL
	D4A981	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-06-03	Xpa	XPA, DNA damage recognition and repair factor	Xpa	xeroderma pigmentosum, complementation group A	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Xpa	xeroderma pigmentosum, complementation group A	Xpa_predicted	xeroderma pigmentosum, complementation group A (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Xpa_predicted	xeroderma pigmentosum, complementation group A (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

Imported Disease Annotations - GAD

Imported Disease Annotations - OMIM

RGD Manual Annotations

Imported Annotations - SMPDB

Imported Annotations - KEGG (archival)

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Imported Disease Annotations - CTD

Imported Disease Annotations - GAD

Imported Disease Annotations - OMIM

RGD Manual Annotations

Imported Annotations - SMPDB

Imported Annotations - KEGG (archival)