Rf57 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Rf57 (Renal function QTL 57) Rattus norvegicus

Symbol: Rf57
Name: Renal function QTL 57
RGD ID: 2316954
Trait: kidney glomerulus morphology trait   (VT:0005325)    
Measurement Type: index of glomerular damage   (CMO:0001135)    
LOD Score: 0.0
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2559,793,528 - 90,450,144RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0561,086,653 - 93,273,130RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0565,595,291 - 97,315,057RGDRnor5.0
RGSC_v3.4562,098,775 - 94,515,803RGDRGSC3.4
Cross Type: intercross
Strains Crossed: GK/KyoSwe BN/NHsdMcwi 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Vertebrate Trait

Rat Strain
BN/NHsdMcwi  (IEA)
GK/KyoSwe  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Distinct genetic regulation of progression of diabetes and renal disease in the Goto-Kakizaki rat. Nobrega MA, etal., Physiol Genomics. 2009 Sep 9;39(1):38-46. Epub 2009 Jul 7.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
9246609LOC103692348uncharacterized LOC10369234855991124059915448Rat
1306737Aldh1b1aldehyde dehydrogenase 1 family, member B156006337060068378Rat
1305656Igfbpl1insulin-like growth factor binding protein-like 156007642860091833Rat
1305807Stra6lSTRA6-like56010694960147546Rat
6498132Ccdc180coiled-coil domain containing 18056015488360223508Rat
41363728LOC120102865uncharacterized LOC12010286556021582360222294Rat
619724Tdrd7tudor domain containing 756023874260312548Rat
41356641LOC120102866uncharacterized LOC12010286656025729860267598Rat
41301366LOC120102867uncharacterized LOC12010286756029682160318015Rat
3874Tmod1tropomodulin 156031644560393957Rat
1310893Tstd2thiosulfate sulfurtransferase like domain containing 256037175160415916Rat
1308973Ncbp1nuclear cap binding protein subunit 156041602360449004Rat
1308769XpaXPA, DNA damage recognition and repair factor56043167360476438Rat
1584846Sord-ps4sorbitol dehydrogenase, pseudogene 456054795960551393Rat
621723Foxe1forkhead box E156063002760632835Rat
1305420TrmotRNA methyltransferase O56066310660676423Rat
621569Hemgnhemogen56067963360698597Rat
41030381LOC120102868uncharacterized LOC12010286856069396560699404Rat
6497914Pfdn6-ps1prefoldin subunit 6, pseudogene 156071755360717974Rat
621285Anp32bacidic nuclear phosphoprotein 32 family member B56074307760765726Rat
1311943NansN-acetylneuraminate synthase56078044160797583Rat
1311514Trim14tripartite motif-containing 1456080003260825481Rat
1309719Coro2acoronin 2A56082563060881917Rat
11466141LOC108350963uncharacterized LOC10835096356086071560864473Rat
11357613LOC108350962uncharacterized LOC10835096256088192860890626Rat
1306860Tbc1d2TBC1 domain family, member 256088411460931717Rat
41122038LOC120102869uncharacterized LOC12010286956090395160904907Rat
619864Gabbr2gamma-aminobutyric acid type B receptor subunit 256094751761288104Rat
3334Anks6ankyrin repeat and sterile alpha motif domain containing 656130918361350596Rat
2320512Dppa3-ps4developmental pluripotency-associated 3, pseudogene 456136001661360478Rat
1562001Galnt12polypeptide N-acetylgalactosaminyltransferase 1256138457561413346Rat
7721743LOC102551073uncharacterized LOC10255107356148938761502617Rat
1310820Col15a1collagen type XV alpha 1 chain56150196361607591Rat
41122460LOC120102870uncharacterized LOC12010287056155012661567214Rat
3852Tgfbr1transforming growth factor, beta receptor 156165377361710777Rat
41084988LOC120102871uncharacterized LOC12010287156172824561741721Rat
1309940Alg2ALG2, alpha-1,3/1,6-mannosyltransferase56176873861773297Rat
1304997Sec61bSEC61 translocon subunit beta56177359461781804Rat
40932422LOC120102872uncharacterized LOC12010287256195026661963787Rat
41344927Psmb3-ps3proteasome 20S subunit beta 3, pseudogene 356213299462133594Rat
41286228LOC120102873uncharacterized LOC12010287356219883162234609Rat
40992078LOC120102874uncharacterized LOC12010287456223105162234747Rat
41124713LOC120103308small nucleolar RNA SNORA1756223163762231768Rat
61882Nr4a3nuclear receptor subfamily 4, group A, member 356236158862401489Rat
708499Stx17syntaxin 1756244613862506108Rat
7516529Exosc8-ps1exosome component 8, pseudogene 156249637662498494Rat
1309176Erp44endoplasmic reticulum protein 4456251655062610762Rat
1563359Invsinversin56261091662763813Rat
7706450LOC102551711uncharacterized LOC10255171156269760362753262Rat
1312045Tex10testis expressed 1056276223062808373Rat
1308165Msantd3Myb/SANT DNA binding domain containing 356286602262892444Rat
11499882LOC108350968uncharacterized LOC10835096856288035062910661Rat
62005Tmeff1transmembrane protein with EGF-like and two follistatin-like domains 156291074062996494Rat
1310395Cavin4caveolae associated protein 456299697563004819Rat
7712908LOC102546330uncharacterized LOC10254633056304368963061249Rat
41041337LOC120102875uncharacterized LOC12010287556308423563097575Rat
41217704LOC120103339small nucleolar RNA SNORA1756324864463248766Rat
1303116Plppr1phospholipid phosphatase related 156343745763725286Rat
41002171Trnaa-agc32transfer RNA alanine (anticodon AGC) 3256368361763683691Rat
41367081LOC120103256small nucleolar RNA SNORD113/SNORD114 family56369844663698522Rat
1585791Cnppd1-ps1cyclin Pas1/PHO80 domain containing 1, pseudogene 156372743963729005Rat
1359532Acnat2acyl-coenzyme A amino acid N-acyltransferase 256375326963757521Rat
1584718Acnat2-ps1acyl-coenzyme A amino acid N-acyltransferase 2, pseudogene56376466663786264Rat
1584701Acnat1acyl-coenzyme A amino acid N-acyltransferase 156379665163801601Rat
2190Baatbile acid CoA:amino acid N-acyltransferase56385166863860641Rat
1308008Mrpl50mitochondrial ribosomal protein L5056386743763872591Rat
1306510Zfp189zinc finger protein 18956387259663884348Rat
2090Aldobaldolase, fructose-bisphosphate B56388904563902086Rat
1307218Pgap4post-GPI attachment to proteins GalNAc transferase 456393191663947004Rat
1311936Rnf20ring finger protein 2056397606364001754Rat
621704Grin3aglutamate ionotropic receptor NMDA type subunit 3A56400684764206408Rat
69232Ppp3r2protein phosphatase 3, regulatory subunit B, beta56402690364027898Rat
41052311Eif2s1-ps1eukaryotic translation initiation factor 2 subunit alpha, pseudogene 156403946064051932Rat
41303713LOC120103338small nucleolar RNA SNORA1756469761764697721Rat
11415834LOC108350970uncharacterized LOC10835097056484877564970925Rat
1562799Cylc2cylicin 256555432065576251Rat
1598042Gemin8-ps9gem (nuclear organelle) associated protein 8, pseudogene 956573527265735956Rat
41272998LOC120103341small nucleolar RNA SNORA1756602623666026348Rat
1597991Sod2-ps1superoxide dismutase 2, pseudogene 156625852666259065Rat
1586077Btbd10-ps2BTB domain containing 10, pseudogene 256651324066514662Rat
2324538Ola1-ps1Obg-like ATPase 1, pseudogene 156660184566602611Rat
1587377Hspa8-ps27heat shock protein family A (Hsp70) member 8, pseudogene 2756660632766608257Rat
1594316Rps6-ps10ribosomal protein S6, pseudogene 1056668085366681691Rat
1305227Smc2structural maintenance of chromosomes 256680688266853478Rat
40926645LOC120103314small nucleolar RNA SNORA1756688363866883766Rat
1309291Toporsltopoisomerase I binding, arginine/serine-rich like56699808367000642Rat
41329014LOC120103196U6 spliceosomal RNA56712440067124500Rat
41361886LOC120102877uncharacterized LOC12010287756719190567195516Rat
1332764Or13f5l1olfactory receptor family 13 subfamily F member 5 like 156722777467228733Rat
1583730Or13f5olfactory receptor family 13 subfamily F member 556724174967242708Rat
1333279Or8i8-ps1olfactory receptor family 8 subfamily I member 8, pseudogene 156726430467264919Rat
1333321Or13c3colfactory receptor family 13 subfamily C member 3C56727844467279397Rat
1333133Or13c3eolfactory receptor family 13 subfamily C member 3E56730562067306573Rat
1332933Or13c3golfactory receptor family 13 subfamily C member 3G56733715267340910Rat
1334211Olr846-psolfactory receptor pseudogene 84656733739567338021Rat
6487777Or13c3bolfactory receptor family 13 subfamily C member 3B56737248967373466Rat
1333384Or13c3folfactory receptor family 13 subfamily C member 3F56740215767403110Rat
41128100LOC120103150olfactory receptor 13C3-like56742361867424571Rat
1332612Or13c3olfactory receptor family 13 subfamily C member 356745575167456701Rat
1333398Or13c25olfactory receptor family 13 subfamily C member 2556751869167519650Rat
1333551Or13c9olfactory receptor family 13 subfamily C member 956755571867556668Rat
1334138Or13d1olfactory receptor family 13 subfamily D member 156758930667590244Rat
41377042LOC120103354U6atac minor spliceosomal RNA56760131267601439Rat
1583223Nipsnap3anipsnap homolog 3A (C. elegans)56761399367625067Rat
1359688Nipsnap3bnipsnap homolog 3B56763764467669698Rat
631344Abca1ATP binding cassette subfamily A member 156767826767801162Rat
9340681LOC103692353uncharacterized LOC10369235356784980867858913Rat
41259190Rpl36a-ps12ribosomal protein L36A, pseudogene 1256795430567958398Rat
1597744Rps23-ps8ribosomal protein S23, pseudogene 856800625968006756Rat
7499527LOC102551410uncharacterized LOC10255141056802042068030171Rat
41336381LOC120102879uncharacterized LOC12010287956802166368030631Rat
621426Slc44a1solute carrier family 44 member 156806194168241912Rat
7555191LOC102551474uncharacterized LOC10255147456811484168145983Rat
1564809Fsd1lfibronectin type III and SPRY domain containing 1-like56825887768334931Rat
2322103LOC100360453chromobox homolog 3-like56828055868281429Rat
1310087Fktnfukutin56833980368396412Rat
1596467Tal2TAL bHLH transcription factor 256841101268417569Rat
1305703Tmem38btransmembrane protein 38B56846030468496026Rat
7525226Plet1-ps1placenta expressed transcript 1, pseudogene 156847472768477394Rat
41253762LOC120103313small nucleolar RNA SNORA1756854841868548540Rat
1564956RGD1564956similar to calcium binding protein P2256857089468571875Rat
1595137LOC685311similar to Histidine triad nucleotide-binding protein 1 (Adenosine 5-monophosphoramidase) (Protein kinase C inhibitor 1) (Protein kinase C-interacting protein 1) (PKCI-1)56863483968635405Rat
41248950LOC120103343small nucleolar RNA SNORA1756865391268654044Rat
41212488LOC120103151uncharacterized LOC12010315156914468869153641Rat
2324157Rpl18-ps2ribosomal protein L18, pseudogene 256937553669376103Rat
41215818LOC120103303small nucleolar RNA SNORA1756943219369432324Rat
41122531LOC120102880uncharacterized LOC12010288056949405369506142Rat
1594562Crat-ps1carnitine O-acetyltransferase, pseudogene 156952910069531269Rat
40933017LOC120103152cytochrome c oxidase subunit 6B1-like56964624769646803Rat
1562123Zfp462zinc finger protein 46256967008569810729Rat
2321090Gpx8-ps1glutathione peroxidase 8, pseudogene 156984410869844745Rat
40972487Trnal-aag10transfer RNA leucine (anticodon AAG) 1056986995869870038Rat
1562958Rad23bRAD23 homolog B, nucleotide excision repair protein57009023270128340Rat
40980160LOC120102881uncharacterized LOC12010288157009059670103137Rat
41038197LOC120103299small nucleolar RNA SNORA1757020966370209794Rat
621445Klf4KLF transcription factor 457027884370283751Rat
40962879LOC12010306940S ribosomal protein S18-like57028434770316393Rat
41386911LOC120103361U2 spliceosomal RNA57030731870307431Rat
41309963LOC120103301small nucleolar RNA SNORA1757030955770309688Rat
40960952LOC120102882uncharacterized LOC12010288257046003770477599Rat
7643335LOC102553326uncharacterized LOC10255332657084070370847771Rat
41155819LOC120103062uncharacterized LOC12010306257103473071037178Rat
40929885Rpsa-ps3ribosomal protein SA, pseudogene 357112474671125687Rat
41028138LOC120103269small nucleolar RNA SNORA557113206671132150Rat
1584966Sec24c-ps1SEC24 homolog C, COPII coat complex component, pseudogene 157139498671407245Rat
7589034LOC102553455uncharacterized LOC10255345557141076071414956Rat
1305655Actl7bactin-like 7b57144553271446920Rat
1304697Actl7aactin-like 7a57144744771450440Rat
620072Elp1elongator acetyltransferase complex subunit 157145333871505833Rat
1594560Abitramactin binding transcription modulator57150585371524224Rat
1311434Ctnnal1catenin alpha-like 157151434071569431Rat
1308958Tmem245transmembrane protein 24557157095271647915Rat
2325586Mir32microRNA 3257159608371596152Rat
1309978Frrs1lferric-chelate reductase 1-like57165591171690132Rat
1562988Epb41l4berythrocyte membrane protein band 4.1 like 4B57169170671852039Rat
1311363Ptpn3protein tyrosine phosphatase, non-receptor type 357190852072027323Rat
11365609LOC108350978uncharacterized LOC10835097857195962271960619Rat
7685874LOC102556038uncharacterized LOC10255603857205669372060103Rat
6497715LOC100910620uncharacterized LOC10091062057209458272101070Rat
41205132LOC120102883uncharacterized LOC12010288357210115572115231Rat
7649691LOC102556095uncharacterized LOC10255609557210349272111379Rat
41025292Smarce1-ps8SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, pseudogene 857218614672200555Rat
6497336Palm2paralemmin 257231364672450645Rat
40948141LOC120103234U6 spliceosomal RNA57250483872504938Rat
1305135Akap2A-kinase anchoring protein 257253698672648524Rat
1589037C5h9orf152similar to human chromosome 9 open reading frame 15257266057372669438Rat
621157Txn1thioredoxin 157271233472724564Rat
7523626LOC102556461uncharacterized LOC10255646157272487472742702Rat
1303121Txndc8thioredoxin domain containing 857274972572785858Rat
11464753LOC108351128uncharacterized LOC10835112857278598072792102Rat
1588987Svep1sushi, von Willebrand factor type A, EGF and pentraxin domain containing 157281120072988813Rat
7708637LOC102546532uncharacterized LOC10254653257281555872823891Rat
3211Muskmuscle associated receptor tyrosine kinase57305842773169696Rat
7550670LOC102550203zinc finger protein 120-like57309120573091526Rat
620563Lpar1lysophosphatidic acid receptor 157322904773347874Rat
41404093LOC120103153uncharacterized LOC12010315357349116173494563Rat
2323431Bex1-ps1brain expressed, X-linked 1, pseudogene 157350552773505906Rat
1332920Or2k2olfactory receptor family 2 subfamily K member 257358268673583627Rat
1306148EcpasEcm29 proteasome adaptor and scaffold57360174573714026Rat
41334998Ndufa5-ps4NADH:ubiquinone oxidoreductase subunit A5, pseudogene 457365922373659587Rat
1586696Hspd1-ps10heat shock protein family D (Hsp60) member 1, pseudogene 1057372826073730198Rat
1586075Cct6a-ps4chaperonin containing Tcp1, subunit 6A (zeta 1), pseudogene 457373065473732638Rat
727958Zfp483zinc finger protein 48357376320173780511Rat
621195Ptgr1prostaglandin reductase 157378400073802624Rat
1561488Dnajc25DnaJ heat shock protein family (Hsp40) member C2557382556573847878Rat
41282557LOC120103300U2 spliceosomal RNA57384285573843025Rat
621514Gng10G protein subunit gamma 1057385612473863017Rat
1586646Shoc1shortage in chiasmata 157386442373956487Rat
7540511LOC102550849uncharacterized LOC10255084957395654973963604Rat
621870UgcgUDP-glucose ceramide glucosyltransferase57403297874065701Rat
7529433LOC102551074uncharacterized LOC10255107457407691374089728Rat
1306966Susd1sushi domain containing 157415765374281171Rat
621671Ptbp3polypyrimidine tract binding protein 357431353674399439Rat
41023182LOC120103265small nucleolar RNA SNORA6857437920274379330Rat
2320086Hnrnpa1-ps39heterogeneous nuclear ribonucleoprotein A1, pseudogene 3957439202074393768Rat
1305387Hsdl2hydroxysteroid dehydrogenase like 257444393374479104Rat
41261574LOC120103353small nucleolar RNA SNORD7557448345274483511Rat
41108935LOC120103243U7 small nuclear RNA57448812374488181Rat
1310951RGD1310951similar to RIKEN cDNA E130308A1957449177774636170Rat
41076485LOC120102886uncharacterized LOC12010288657451184374515127Rat
41132309LOC120102885uncharacterized LOC12010288557456447374568006Rat
1307983InipINTS3 and NABP interacting protein57464839274662628Rat
41190661Trnas-aga22transfer RNA serine (anticodon AGA) 2257467176274671843Rat
1311367Snx30sorting nexin family member 3057468390274813013Rat
41324317Trnaa-agc81transfer RNA alanine (anticodon AGC) 8157473727474737355Rat
1310485Slc46a2solute carrier family 46, member 257480022674808128Rat
708508Obp3alpha-2u globulin PGCL457484231674845858Rat
41369930Zfp37-ps6zinc finger protein 37, pseudogene 657486333974895596Rat
708501LOC259244alpha-2u globulin PGCL357490946874912890Rat
41225436LOC120102889major urinary protein-like57491752475569763Rat
2323040Zfp37-ps1zinc finger protein 37, pseudogene 157493033574960075Rat
735211Mup4major urinary protein 457496114374964686Rat
7682781Zfp37-ps4zinc finger protein 37, pseudogene 457497845374985589Rat
1583727Mup18major urinary protein 1857498681374990071Rat
41225607Mup4-ps6major urinary protein 4, pseudogene 657501439375016663Rat
6489783Zfp37-ps3zinc finger protein 37, pseudogene 357504402175200228Rat
1588799Mup4-ps7major urinary protein 4, pseudogene 757505917075061471Rat
9267319Mup4-ps8major urinary protein 4, pseudogene 857514215675145524Rat
735107Mup5major urinary protein 557520132475204903Rat
1566134Mup4l2major urinary protein 4 like 257520132475224797Rat
41362570Zfp37-ps5zinc finger protein 37, pseudogene 557521304975221201Rat
41157556LOC120103071major urinary protein-like57528152075283268Rat
6495515Zfp37-ps2zinc finger protein 37, pseudogene 257530189275311574Rat
1593272LOC298111alpha2u globulin57531171375316792Rat
40999109Mup4-ps4major urinary protein 4, pseudogene 457539412375397484Rat
40994216Mup4-ps3major urinary protein 4, pseudogene 357542016175422438Rat
41225041Mup4-ps2major urinary protein 4, pseudogene 257546285575472666Rat
11403548Mup4-ps1major urinary protein 4, pseudogene 157546285575498898Rat
41380609LOC120103072zinc finger protein 37-like57548850175532807Rat
41286760Mup4-ps5major urinary protein 4, pseudogene 557557956475581856Rat
41209452Trnap-ggg4transfer RNA proline (anticodon GGG) 457558855575588628Rat
620723Zfp37zinc finger protein 3757559873275638896Rat
41009651LOC120103073uncharacterized LOC12010307357565420575664531Rat
11514913LOC108350981uncharacterized LOC10835098157567230775691604Rat
1307963Slc31a2solute carrier family 31 member 257573800875748542Rat
1304816Fkbp15FKBP prolyl isomerase family member 1557575078675815038Rat
620059Slc31a1solute carrier family 31 member 157581474475844241Rat
1311342Cdc26cell division cycle 2657584485275859837Rat
1311303Prpf4pre-mRNA processing factor 457585993475873924Rat
1564412Rnf183ring finger protein 18357587711175886253Rat
1309367Wdr31WD repeat domain 3157589707475917461Rat
7534874LOC102547534uncharacterized LOC10254753457591749175921199Rat
708400BspryB-box and SPRY domain containing57592739775949585Rat
1585262Hdhd3haloacid dehalogenase-like hydrolase domain containing 357595130875954775Rat
2083Aladaminolevulinate dehydratase57596199375972334Rat
40987917LOC120102894uncharacterized LOC12010289457597160175972858Rat
1359475Pole3DNA polymerase epsilon 3, accessory subunit57597394175977175Rat
1563460LOC500475similar to hypothetical protein 4933430I1757597729676002179Rat
6500827LOC10091001760S ribosomal protein L31-like57598578575986272Rat
3566Rgs3regulator of G-protein signaling 357602203876161895Rat
1561252Uchl3-ps2ubiquitin C-terminal hydrolase L3, pseudogene 257603749876038593Rat
41255465LOC120102895uncharacterized LOC12010289557616671976167330Rat
41324074LOC120102896uncharacterized LOC12010289657618489376187189Rat
1310743Zfp618zinc finger protein 61857639851476564837Rat
2102Ambpalpha-1-microglobulin/bikunin precursor57656809476578416Rat
1308487Kif12kinesin family member 1257659620476603261Rat
735115Col27a1collagen type XXVII alpha 1 chain57664730276765987Rat
2325417Mir455microRNA 45557668931376689390Rat
67390Orm1orosomucoid 157676663776776149Rat
1308202AknaAT-hook transcription factor57677741576824380Rat
7695413LOC102547858uncharacterized LOC10254785857680748576814704Rat
631330Whrnwhirlin57682830876911945Rat
11400923LOC108351093H/ACA ribonucleoprotein complex subunit 3 pseudogene57693498976936468Rat
1310088Atp6v1g1ATPase H+ transporting V1 subunit G157696146276967642Rat
1304595Tmem268transmembrane protein 26857697482777001457Rat
7697789LOC102553131uncharacterized LOC10255313157700793877011175Rat
1584073Tex48testis expressed 4857701716277033720Rat
41102148LOC120103204U6 spliceosomal RNA57704088277040985Rat
1586184Gapdh-ps110Glyceraldehyde-3-phosphate dehydrogenase, pseudogene 11057709206177094437Rat
628735Tnfsf15TNF superfamily member 1557714009977156142Rat
11371333LOC108350984U6 snRNA-associated Sm-like protein LSm6 pseudogene57714581477155846Rat
1590403Tnfsf8TNF superfamily member 857725388177277078Rat
621057Tnctenascin C57737585177460712Rat
9234855LOC103692377uncharacterized LOC10369237757750867977564182Rat
1593270tuba1c-ps3tubulin, alpha 1C, pseudogene 357767917177681447Rat
41206721LOC120103331small nucleolar RNA SNORA1757782081177820944Rat
40946078LOC120103154uncharacterized LOC12010315457816128078184113Rat
1560180Eno1-ps16enolase 1, pseudogene 1657823847878242959Rat
1307742Pappapappalysin57849766078735873Rat
2320342Astn2astrotactin 257875814279744021Rat
1305238Trim32tripartite motif-containing 3257900513979016615Rat
41199365Rnu6-1015RNA, U6 small nuclear 101557930709979307205Rat
41173321H2az2-ps2H2A.Z variant histone 2, pseudogene 257972162879721952Rat
3870Tlr4toll-like receptor 458014586780159501Rat
41095319LOC120103275small nucleolar RNA SNORA4458024866580248782Rat
41251418LOC120103186U6 spliceosomal RNA58035941580359521Rat
1593269Rpl13-ps6ribosomal protein L13, pseudogene 658078316180783785Rat
1561195RGD1561195similar to ribosomal protein L3158108325981083651Rat
1597387Cyc1-ps1cytochrome c-1, pseudogene 158113645281138332Rat
2318318Tra2b-ps4transformer 2 beta, pseudogene 458161556381658762Rat
1583726Hspa8-ps11heat shock protein family A (Hsp70) member 8, pseudogene 1158201034882012966Rat
11518618LOC108351129uncharacterized LOC10835112958218638382197382Rat
708519Brinp1BMP/retinoic acid inducible neural specific 158234850182550506Rat
11361552LOC108350985uncharacterized LOC10835098558255050182595277Rat
40998207LOC120102898uncharacterized LOC12010289858261444582621071Rat
41075768LOC120102897uncharacterized LOC12010289758263378382636269Rat
41071177LOC120103201U6 spliceosomal RNA58269977582699881Rat
2318120Chac2-ps4ChaC glutathione specific gamma-glutamylcyclotransferase 2, pseudogene 458285086782862378Rat
41330673LOC120102899uncharacterized LOC12010289958352735783609586Rat
708451Cdk5rap2CDK5 regulatory subunit associated protein 258379228283961129Rat
41127110LOC120103273small nucleolar RNA SNORA4458393538783935515Rat
41186256LOC120102900uncharacterized LOC12010290058396088483976651Rat
1308330Megf9multiple EGF-like-domains 958399356584105622Rat
9685074Mir3084cmicroRNA 3084c58417737584177443Rat
2324484Sppl3-ps1signal peptide peptidase like 3, pseudogene 158426997084278377Rat
1585621LOC683573similar to response gene to complement 3258428089784281785Rat
9106595LOC103692379small ubiquitin-related modifier 3 pseudogene58527277285273104Rat
6491129Slc25a4-ps1solute carrier family 25 member 4, pseudogene 158540968985410315Rat
41169748LOC120103074uncharacterized LOC12010307458543843585440033Rat
11383413LOC108351095serine/arginine repetitive matrix protein 1-like58544262085444118Rat
41319702LOC120103075uncharacterized LOC12010307558544663085448161Rat
40944481LOC120103076uncharacterized LOC12010307658545186285453391Rat
41198326LOC120103077uncharacterized LOC12010307758545591285457437Rat
41238411LOC120103078uncharacterized LOC12010307858545995885461489Rat
11433168LOC108351130uncharacterized LOC10835113058546400885465546Rat
41020726LOC120103079uncharacterized LOC12010307958546807885469609Rat
41193095LOC120103080uncharacterized LOC12010308058547212485473655Rat
11487297LOC108351094serine/arginine repetitive matrix protein 1-like58547618585477725Rat
1592335Smarca2-ps2SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2, pseudogene 258551439885523157Rat
41325019LOC120103336small nucleolar RNA SNORA1758566586285665987Rat
1309237Tle1TLE family member 1, transcriptional corepressor58585182785934806Rat
41197324LOC120103332small nucleolar RNA SNORA1758675458386754709Rat
2324113LOC100362745zinc finger protein 101-like58687095386873370Rat
2324063Oma1-ps1OMA1 zinc metallopeptidase, pseudogene 158691306886915146Rat
41357879LOC120103337small nucleolar RNA SNORA1758699225086992375Rat
41164090Rpl34-ps8ribosomal protein L34, pseudogene 858701752187020226Rat
1592267Rps18-ps6ribosomal protein S18, pseudogene 658725020087250683Rat
41145427LOC120103327small nucleolar RNA SNORA1758750390987504029Rat
1306418RasefRAS and EF hand domain containing58754890887619286Rat
41144701LOC120102901uncharacterized LOC12010290158759930187602345Rat
11502494LOC108351096dnaJ homolog subfamily B member 1 pseudogene58768168087682686Rat
1359584LOC298139similar to RIKEN cDNA 2310003M0158769273387706183Rat
1304802Frmd3FERM domain containing 358776460488032261Rat
1587638Pdia5-ps1protein disulfide isomerase family A, member 5, pseudogene 158781125787866725Rat
11381374LOC108350987COMM domain-containing protein 2 pseudogene58802717288030854Rat
1562410Dppa3-ps2developmental pluripotency-associated 3, pseudogene 258809741888098963Rat
1307528Kdm4clysine demethylase 4C58810071088306821Rat
1589969Rpl9-ps24ribosomal protein L9, pseudogene 2458836086588361547Rat
41155933LOC120103302small nucleolar RNA SNORA1758857255288572680Rat
1589947Vom2r-ps76vomeronasal 2 receptor, pseudogene 7658869625688791737Rat
41128577Hmgb2-ps5high mobility group box 2, pseudogene 558887382988874342Rat
1309148Dmac1distal membrane arm assembly component 158924117389243793Rat
1589924Eef1g-ps16eukaryotic translation elongation factor 1 gamma, pseudogene 1658926144489263004Rat
2324835Mdh2-ps1malate dehydrogenase 2, pseudogene 158998218289984494Rat
1561090Ptprdprotein tyrosine phosphatase, receptor type, D59004699390698977Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10931D5Wox1322657516579275166041Ratregion
33836D5Mit912756029343460293557Ratregion
33921D5Mit219456928513369285327Ratregion
33967D5Mit330058108229081082586Ratregion
33981D5Mit426659045014490450412Ratregion
33985D5Mit1114558361072983610862Ratregion
34057D5Mit1713557196353371963668Ratregion
34144D5Mgh1114657425132074251464Ratregion
34170D5Mgh2412457830912778309253Ratregion
34216D5Mgh614456898430768984447Ratregion
34322D5Mgh1014155979339959793528Ratregion
36135D5Rat2016858463946784639641Ratregion
37440D5Rat8412956954029569540447Ratregion
37684D5Rat7620056558701265587212Ratregion
36482D5Rat1215256785677667856928Ratregion
36558D5Rat1916858672382786724018Ratregion
36634D5Rat1713158145011481450254Ratregion
36689D5Rat1414157599664575996794Ratregion
36743D5Rat1115356281175862811911Ratregion
34953D5Rat1515257710834477108498Ratregion
35032D5Rat1816058886887988869033Ratregion
35144D5Rat1316857338076273380925Ratregion
35783D5Rat1014356151004461510180Ratregion
39644D5Rat14420057454650474546700Ratregion
39738D5Rat18219057196353271963722Ratregion
38308D5Rat10716159040530290405423Ratregion
40430D5Rat19417556222253762222721Ratregion
38546D5Rat6823858163002581630249Ratregion
38700D5Rat8524758592266185922904Ratregion
38740D5Rat11321057348379673483994Ratregion
38768D5Rat10014856617408066174226Ratregion
40272D5Rat13815956213209362132240Ratregion
39150D5Rat10420056925722469257424Ratregion
39252D5Rat7523457405864074058878Ratregion
39344D5Rat14323757480875974809008Ratregion
39402D5Rat13924656856377068564008Ratregion
42744D5Rat22523756291968262919913Ratregion
42745D5Rat22723256151334261513580Ratregion
42747D5Rat22822257136600871366215Ratregion
42748D5Rat22921357413420674134408Ratregion
42749D5Rat23024157944341179443657Ratregion
42765D5Rat25822158534999385350219Ratregion
41206D5Rat14614957733153277331679Ratregion
41250D5Rat14028556416853864168813Ratregion
41250D5Rat14028556416859964168813Ratregion
41314D5Rat14116156807141868071553Ratregion
41318D5Rat14713358239439282394565Ratregion
40790D5Rat13720956303981863040023Ratregion
41800D5Rat19514756260545262605589Ratregion
43730D3Got12414957127070771270856Ratregion
43895D5Got618556776813267768317Ratregion
43896D5Got13810456635427166354375Ratregion
43897D5Got12325056928512869285378Ratregion
43899D5Got717956397254563972724Ratregion
43901D5Wox515457464717274647338Ratregion
43906D5Got1023457645349476453730Ratregion
43907D5Got1221557747701677477231Ratregion
43908D5Got1125857749607877496333Ratregion
43909D5Got1427857780413377804411Ratregion
43910D5Got1527657821351378213789Ratregion
43911D5Got1917557793466977934844Ratregion
43913D5Got1715557895312778953282Ratregion
43914D5Got1816657903139279031558Ratregion
43915D5Got1613457961481279614946Ratregion
43917D5Got2017758183724581837422Ratregion
43918D5Got2222958247860682478831Ratregion
43919D5Got12417358253949782539670Ratregion
43920D5Got2319658376654383766739Ratregion
43921D5Got12622458499908584999311Ratregion
43922D5Got2112558528618185286306Ratregion
43923D5Got12516158592818985928350Ratregion
60477D5Got1312357764058877640711Ratregion
69510D5Uwm2018157614628376146472Ratregion
69511D5Uwm2113257720142777201563Ratregion
69513D5Uwm2213757834116978341308Ratregion
69556D5Uwm5215557054955870549930Ratregion
69556D5Uwm5215557054976370549930Ratregion
69560D5Uwm1716756676865566768840Ratregion
69566D5Uwm1916157264574772645916Ratregion
625776D5Got916256503376365033927Ratregion
62505D5Uia536058224118482241537Ratregion
66413D5Mco422756151934461519706Ratregion
629631D5Hmgc222657516579275166041Ratregion
66643D5Mco1715456822800968228173Ratregion
66690D5Mco3022756033397760334226Ratregion
66700D5Mco3312858648036786480495Ratregion
67270D5Arb28158651684186516922Ratregion
67273D5Arb631157086653770866848Ratregion
67274D5Arb826257677548776775749Ratregion
67766D5Uwm112458952483989524947Ratregion
1630234D5Got27221758736218087362397Ratregion
1630836D5Wox3015156240108262401231Ratregion
1631434D5Got30021457081264770812861Ratregion
1581996D5Uwm6527756319089063191167Ratregion
1582002D5Uwm6127458081311680813390Ratregion
1582004D5Uwm6825057404727274047522Ratregion
1582030D5Uwm6622056992728369927503Ratregion
1582038D5Uwm6427456005104760051321Ratregion
1582044D5Uwm6727257636977676370048Ratregion
1582058D5Uwm6027957294340072943679Ratregion
1628964D5Got26618456558474265584926Ratregion
1629160D5Got23112357225265272252775Ratregion
1629193D5Got23024656168377661684022Ratregion
1630039D5Got29614958295380182953950Ratregion
1638901D5Got3139857793469977934797Ratregion
1639076D5Got2378758529613985296226Ratregion
1639577D5Got30917458329499883295169Ratregion
1641663D5Wox4411756094761960947736Ratregion
1639759D5Got23421757054119870541415Ratregion
1633165D5Got25815157129913071299276Ratregion
1640209D5Got23213757377321873773355Ratregion
1635459D5Got27327458145238181452653Ratregion
1635679D5Wox4218857406338874063576Ratregion
1636654D5Got29016457907160179071767Ratregion
1637413D5Got28612357219574072195863Ratregion
1634085D5Got29324156077307260773313Ratregion
1634131D5Got23320056925718969257389Ratregion
7206490UniSTS:54664683756006744960068286Ratregion
5035889PMC289161P130458015854480158848Ratregion
5038928RH12741318957584393775844126Ratregion
5036322UniSTS:14324115757323090873231065Ratregion
5036619AU04861826756685612066856374Ratregion
5036721AU04899229156291316162913452Ratregion
5036755AU04910117458629004386290217Ratregion
5031298PMC133552P143056236805662368486Ratregion
5033959RH14076813657431533574315471Ratregion
5033971RH14080821156819439268194603Ratregion
5026056RH13073620757484235074842557Ratregion
5026056RH13073620757514218475142391Ratregion
5026056RH13073620757539415175394358Ratregion
7205846EMBRA362143557412970974131137Ratregion
5031434AU04833813356273476062734893Ratregion
5034133RH14148818957611807676118265Ratregion
5034231RH14186120757190851871908725Ratregion
5034239RH14189019457264489972645093Ratregion
5034440BE11805415057873351378733663Ratregion
5029111RH14356416756254904462550358Ratregion
5031916AU04671620958742166287421871Ratregion
5026600RH13283116757378030373780470Ratregion
5026674RH13310418457594927375949457Ratregion
5032123RH9445517456388906563889239Ratregion
5032181RH12625720156849445868494659Ratregion
5034698AI70391721659024019690240412Ratregion
5026838RH13372421657582241875823125Ratregion
5029423UniSTS:23812654556828077368281315Ratregion
5027030RH13446319157597484275975309Ratregion
5027068A004T0120556251660362516808Ratregion
5029823BE10296717356294800062948173Ratregion
5034854AI23373714557587950175879646Ratregion
5027267AU01719112256168551861685640Ratregion
5027269AW5508809357272024172720334Ratregion
5027271AI59701312057677752476777644Ratregion
5029923BE09784221959026354490263763Ratregion
5032773RH13524619257600875276008944Ratregion
5032773RH13524619257600875276008944Ratregion
5032797RH13533319756833910768339304Ratregion
5035170BE10214215856033851360338671Ratregion
5027589AU0676978457378008673780170Ratregion
5032879RH13682313857676574076765878Ratregion
5024986BB36019311056275962962759739Ratregion
5027679242D11L227357580318275803455Ratregion
502785513.MHAa96b1.seq11857723904077239158Ratregion
5025322RH12787221358924285089243063Ratregion
5030577BE11349815456026619260266346Ratregion
5030705BI30181715158221256982212720Ratregion
5025458RH12839620757447954174479750Ratregion
5025512RH12860719257700105777001249Ratregion
5030835BE12059917958238161782381796Ratregion
5025614RH128997056082572660825908Ratregion
5025668RH12920121357584176375841976Ratregion
5028328WI-1264610358585224985852352Ratregion
5030885BF39914321356109676261096975Ratregion
5033713RH13984318256967164069671822Ratregion
5033835RH14029520057151287771513076Ratregion
5031187BF40774313556508763165087766Ratregion
5031205RH10424113658391206483912200Ratregion
5051372AW5587858357360363373603716Ratregion
5053659RH14277717357151078871510960Ratregion
5051697RH9460510057271223672712336Ratregion
5056991Ikbkap8257147665671476834Ratregion
5051813RH9467317357677620276776374Ratregion
5054709RH14338015356030411860304271Ratregion
5059450AW53089316956402697064027396Ratregion
5054997RH14354622357317017973170402Ratregion
5057928BF38633315058784566087845810Ratregion
5055841RH14403310656299620762996313Ratregion
5059588BE09736618257600198676002168Ratregion
5059704BE09766715057362876173628911Ratregion
5056567RH14445312756039707860397205Ratregion
5056727RH14454517057157060271570772Ratregion
5058178BF38676115057172129171721441Ratregion
5059766BE10319317956813956468139743Ratregion
5058294BF38697915956363410263634261Ratregion
5049844RH13371419156824165168241842Ratregion
5049954RH13377821657463031574630531Ratregion
5050026RH13381915157266064572660796Ratregion
5059364AW53033214457682847076828614Ratregion
5059374AW53046621656276357462763790Ratregion
5057594BE10107614656033852560338671Ratregion
5050696RH13420520658398656583986771Ratregion
5054189RH14308116757463764274637809Ratregion
5050316RH13398620956007647260076681Ratregion
5052757RH14225618259004860190048779Ratregion
5051368AI64904810157264825072648351Ratregion
5051370AI31418013457360454173604671Ratregion
5051374AI50513914557656364676563791Ratregion
5054495RH14325710156177131761772953Ratregion
5050530RH13410918257465022074650402Ratregion
5050588RH13414318057684113076841310Ratregion
5050752RH13423818156300735363007534Ratregion
5053247RH14253810256106341361063515Ratregion
5053313RH14257615756130956661309723Ratregion
5051625BB18131610157364200973642110Ratregion
5051815RH9467418057677259276772772Ratregion
5054677RH14336222456223062762230851Ratregion
5054855RH14346415058801192888012078Ratregion
5040888RH12854121757389396173894178Ratregion
5040970RH12858820257584625975846461Ratregion
5043452RH13003318057737596177376141Ratregion
5044592RH13069218357360350173603684Ratregion
5044714RH13076218258016089980161081Ratregion
5041110RH12866820856372757263727780Ratregion
5041110RH12866820856372757263727780Ratregion
5045342RH13112319657157103971571235Ratregion
5041436RH12885519457176632171766515Ratregion
5043902RH13029418158395941783959598Ratregion
5044114RH13041820556044811760448322Ratregion
5045872RH13142718356388373763883920Ratregion
5046010RH13150718956276249862762687Ratregion
5046130RH13157516656155016261550328Ratregion
5041894RH12912015856251775662517914Ratregion
5041920RH12913521356388907463889287Ratregion
5044732RH13077220157391845473918649Ratregion
5048734RH13307419057264594572646134Ratregion
5048810RH13311819557169190371692099Ratregion
5046396RH13172918556063254560632729Ratregion
5044296RH13052118757595152875951715Ratregion
5046586RH13183918057322925373229433Ratregion
5047518RH13237319656553104265531238Ratregion
5046124RH13157215257115996171160113Ratregion
5046124RH13157215257115996171160113Ratregion
5048886RH13316221358769278287692995Ratregion
5047822RH13254820957151496471515173Ratregion
5048008RH13265519157196040271960593Ratregion
5049064RH13326518157587722475877405Ratregion
5049082RH13327620157463293774633138Ratregion
5046862RH13199719555990586959906064Ratregion
5048154RH13273919256044854660448738Ratregion
5048230RH13278318357575094175751124Ratregion
5048264RH13280320357584501175845214Ratregion
5048288RH13281619957902038079020577Ratregion
5049748RH13365918856810336268103550Ratregion
5039348RH12765420256386795963868161Ratregion
5047256RH13222322056251668862516908Ratregion
5048442RH13290618056079646660796646Ratregion
5048446RH13290820856141824961418457Ratregion
5042376RH12939915157444427174444422Ratregion
5042404RH12941516757019406070194227Ratregion
5048616RH13300618156251402562514206Ratregion
5049638RH13359619357406536174065554Ratregion
5039998RH12802919057584174775841937Ratregion
5042670RH12957418857447877174478959Ratregion
5041988RH12917422056039300960393229Ratregion
5042036RH12920215256388908063889232Ratregion
5039740RH12787920656251735762517563Ratregion
5039904RH12797418557165597471656159Ratregion
5042268RH12933621856249822462498442Ratregion
5040656RH12840820556176892561769130Ratregion
5040858RH12852421757386270073862917Ratregion
5043450RH13003221556148955361489768Ratregion
5042664RH129571056839598968396195Ratregion
5041108RH12866720756766938767669594Ratregion
5043218RH12990018256006815960068341Ratregion
5072634RH13696318057574829075748470Ratregion
5075012RH13834813457699997477000108Ratregion
5075042RH13836519857680589476806092Ratregion
5075154RH13843022857677473976776114Ratregion
5072180RH13669914657145349171453637Ratregion
5073918RH13771418857576913375769321Ratregion
5075392RH13856712256806282068062942Ratregion
5075968RH13890118959004929590049484Ratregion
5075982RH13890912656299593362996059Ratregion
5076726RH13934313257872310578723237Ratregion
5075474RH13861514056154214961542289Ratregion
5074762RH13820416257460518174605343Ratregion
5074804RH13822815058594172985941879Ratregion
5074976RH13832718858761906087619248Ratregion
5080638RH14169519157479622774796418Ratregion
5077626RH13986420756289206362892270Ratregion
5076580RH13925815357390435473904507Ratregion
5079594RH14109019158585197785852168Ratregion
5079708RH14115718657696730076967486Ratregion
5079792RH14120518757012912470129311Ratregion
5077892RH14002018156839331268393493Ratregion
5080146RH14141019557151891671519111Ratregion
5080162RH14142018556068052960681689Ratregion
5078418RH14033114357013841170138556Ratregion
5070882RH13476018257169245671692638Ratregion
5073098RH13723621256849422968494441Ratregion
5080278RH14148718557145498671455171Ratregion
5080494RH14161121756240089662401113Ratregion
5078780RH14054722256250570762505930Ratregion
5073570RH13751313057378404373784173Ratregion
5072946RH13714520856386865363868861Ratregion
5073124RH13725218256080064960800831Ratregion
5071706RH13523720057406303374063233Ratregion
5071814RH13530020556767933067679535Ratregion
5073912RH13771024656814698668147232Ratregion
5074008RH13776623657171387071714106Ratregion
5074102RH13782215356393196763932120Ratregion
5074160RH13785619556968438669684581Ratregion
5071260RH13498020556250304762503252Ratregion
5071420RH13507220657756384877564054Ratregion
5071476RH13510418959005028390050472Ratregion
5073618RH13754014457263701472637158Ratregion
5073768RH13762714956065544060655589Ratregion
5072246RH13673817157463759774637768Ratregion
5072368RH13680924857444309374443341Ratregion
5072474RH13687020757659625476596461Ratregion
5061808AW52710522257250504872505273Ratregion
5066886AU04809215257184724471847396Ratregion
5066756AU04816915758185598681856143Ratregion
5067616AU04763813058755826887558398Ratregion
5067626AU04763122458755818287558405Ratregion
5067976AU04742412158259965982599780Ratregion
5068242AU04726422558298201182982236Ratregion
5068574AU04706417558343692883437103Ratregion
5068660AU04701019657338071173380907Ratregion
5069646AU04636321857226979972270018Ratregion
5060124BF38852014057591670075916840Ratregion
5062164BE11285821156882895068829161Ratregion
5063780AW53515215357310139073101543Ratregion
5060454BE09813115656251680562516961Ratregion
5060544BE11030315656066789760668053Ratregion
5060588BE09851515057615943876159588Ratregion
5062700BF40388321256852725768527469Ratregion
5062750AW53422717156066312660663297Ratregion
5064236BE12082921757872980378730020Ratregion
5065928BE11617616556849325768493422Ratregion
5060320AW53137820457460790074608104Ratregion
5061862AI70995017657158036171580537Ratregion
5061976BF39703319156399519963995507Ratregion
5065204BE12117617757156234971562526Ratregion
5064002AA95600113857145552471455662Ratregion
5060776BF38911915956975430369754462Ratregion
5060886BI28681812257957986879579990Ratregion
5064292AW52991615456393812663938280Ratregion
5066094BE11680915257667077276670924Ratregion
5064470BF39928715756367816863678325Ratregion
5062994BF41012023859016652190166760Ratregion
5063040BF39828018357901890379019086Ratregion
5064654BI30249517557274248072742655Ratregion
5064704BE10835715656044811760448273Ratregion
5066408AU04837415856037196760372125Ratregion
5063282BI30163820356319848763198688Ratregion
5084230AA84882920856767853367678741Ratregion
5086042BE10377819056833001168330201Ratregion
5087086AA92446017356249813262498305Ratregion
5087100AW52324025356017250760172760Ratregion
5087354AI55527118557191136771911552Ratregion
5087500PMC20962P120756063021460630421Ratregion
5086481BM38649018157379969073799871Ratregion
5086551BM38581316357141457671414739Ratregion
5089807AU04937529356652837766528670Ratregion
5087484PMC207565P114156780109567801236Ratregion
5087873Fin1613756685302466853161Ratregion
5089973AU04947422557184437671844596Ratregion
5083129BF39082416656248033062480496Ratregion
5089289AU04906720856136478961364997Ratregion
5083585BF39192918156036465360364834Ratregion
5083605BI28298721956160712861607347Ratregion
5088349AU04851620657636775876367959Ratregion
5089535AU04921322756219378062194007Ratregion
5083729AI10538221656833188768332103Ratregion
5088757AU04875914357312353173123676Ratregion
5089575AU04923717157926627979266450Ratregion
5089585AU04924214157196357071963711Ratregion
5090391AU04972328858269905382699341Ratregion
5085028AI00898720756767986367680070Ratregion
5085433BE09684617957696927876969457Ratregion
5085216BE09645715357245671472456867Ratregion
5085222Tlr417858015806080158238Ratregion
5085369BQ20134119357272625972726452Ratregion
5090299AU04966822456758368467583908Ratregion
5081276RH14206719756088413760884334Ratregion
5085421AI59878717357338110573381278Ratregion
5085774BQ21140718657152808271528268Ratregion
5089159AU04899017256014247660142652Ratregion
5089217AU04902527156127103261271303Ratregion
5081408AI50195418057145638471456564Ratregion
5086012BM38381020556037835660378561Ratregion
5084832AI17218917756849559968495779Ratregion
5083073BF39075615157376644173766592Ratregion
5083079BF39077616756240251162402678Ratregion
5085677AW52687012257656466676564788Ratregion
5083487BF39148914656800775968007905Ratregion
5086813BE10736515557463759674637751Ratregion
5081711BF40846912457415792374158047Ratregion
5081895BE11868016658248456082484726Ratregion
5081903BE11871916956299916362999332Ratregion
5085808BF38741715157900872979008880Ratregion
5085958AI13709622056819073868190956Ratregion
5083757AI00976812657574935875749484Ratregion
5083867AI23085120257416374974163951Ratregion
5503142PTPRD059006061290061733Ratregion
5503542PALM2__581972157244868372449552Ratregion
5503542PALM2__581972157244883172449552Ratregion
5503813CDW92_935072456819137468192098Ratregion
5503954Klf455257028191770283119Ratregion
5504222RH7997520756819085068191057Ratregion
5505134Ambp9857657284776573596Ratregion
5505352Atp6v1g114857696543276966960Ratregion
5505762UniSTS:492614130557144559671446901Ratregion
5506240Sctt01136857463264374633011Ratregion
5500174D4Mit22945056147419161474641Ratregion
5500280D2S213811556194776161947876Ratregion
5499833UniSTS:23491823756068225960682496Ratregion
5499841UniSTS:23494015657901489779015053Ratregion
5500352GDB:28063017556006636660066541Ratregion
5500729D19S40990457379811873799022Ratregion
5503490ZNF618__471460257655853076559132Ratregion
5500947MARC_9753-9754:996688568:167756039741860398095Ratregion
5501061PMC133552P235456236923462369588Ratregion
5501434Sod224156625852166258762Ratregion
5501470D9S187E7156973380869733879Ratregion
5501838MARC_15327-15328:1017321397:179856399472063995518Ratregion
5501964MARC_21252-21253:1032892750:126457178090071781164Ratregion
6904163D5Uwm7730057752186077522160Ratregion
6904165D5Uwm7826357754076277541025Ratregion
6904167D5Uwm7924757758593877586187Ratregion
6904169D5Uwm8028357763271877633001Ratregion
6904171D5Uwm8127457771465477714928Ratregion
6904173D5Uwm8227457774323977743513Ratregion
6904175D5Uwm8329057778640477786694Ratregion
6904177D5Uwm8427657779107677791352Ratregion
6904177D5Uwm8427657779107677791604Ratregion
6904177D5Uwm8427657779124077791352Ratregion
6904179D5Uwm8525457781615577816409Ratregion
6904181D5Uwm8629357781946577819841Ratregion
6904181D5Uwm8629357781954877819841Ratregion
6904183D5Uwm8721157796053577960746Ratregion
6904185D5Uwm8825657798860477988860Ratregion
6904187D5Uwm8922057799815177998371Ratregion
6904189D5Uwm9021957800587678006099Ratregion
6904191D5Uwm9121557801870678018921Ratregion
6904193D5Uwm9224257803884078039084Ratregion
6904195D5Uwm9317857810195878102136Ratregion
6904197D5Uwm9414657819183078191978Ratregion
6904199D5Uwm9526257855420578554465Ratregion
6904201D5Uwm9628757866221078662497Ratregion
6904203D5Uwm9727557961821779618492Ratregion
6904205D5Uwm9822158014535980145576Ratregion
Position Markers

Flank 1: (D5Mit4)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2590,450,144 - 90,450,412 (+)MAPPER
Rnor_6.0593,273,130 - 93,273,395NCBI
Rnor_5.0597,315,057 - 97,315,322UniSTS
RGSC_v3.4594,515,803 - 94,516,069RGD
RGSC_v3.4594,515,804 - 94,516,069UniSTS
RGSC_v3.1594,520,917 - 94,521,182RGD
Celera589,134,454 - 89,134,719UniSTS
RH 3.4 Map5696.7RGD
RH 3.4 Map5696.7UniSTS
Cytogenetic Map5q31UniSTS
Peak: (D5Mgh11)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2574,251,320 - 74,251,464 (+)MAPPER
Rnor_6.0576,608,035 - 76,608,178NCBI
Rnor_5.0580,745,804 - 80,745,947UniSTS
RGSC_v3.4577,484,155 - 77,484,299RGD
RGSC_v3.4577,484,156 - 77,484,299UniSTS
RGSC_v3.1577,489,268 - 77,489,412RGD
Celera573,070,369 - 73,070,512UniSTS
RH 3.4 Map5524.8UniSTS
RH 3.4 Map5524.8RGD
RH 2.0 Map5399.0RGD
SHRSP x BN Map544.5699RGD
Cytogenetic Map5q24UniSTS
Flank 2: (D5Mgh10)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2559,793,399 - 59,793,528 (+)MAPPER
Rnor_6.0561,086,525 - 61,086,653NCBI
Rnor_5.0565,595,163 - 65,595,291UniSTS
RGSC_v3.4562,098,646 - 62,098,775RGD
RGSC_v3.4562,098,647 - 62,098,775UniSTS
RGSC_v3.1562,098,825 - 62,098,954RGD
Celera558,361,489 - 58,361,617UniSTS
SHRSP x BN Map537.0299UniSTS
SHRSP x BN Map537.0299RGD
Cytogenetic Map5q22UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331756Rf34Renal function QTL 344.16275kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)5190450412Rat
70212Niddm25Non-insulin dependent diabetes mellitus QTL 253.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)51131345958Rat
1331771Rf35Renal function QTL 354.36965kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)572947086724018Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
8662454Vetf3Vascular elastic tissue fragility QTL 327.4artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)5228222669540447Rat
7394712Emca13Estrogen-induced mammary cancer QTL 13mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)5982326699753708Rat
634305Mamtr1Mammary tumor resistance QTL 10.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)512789751113558310Rat
1600358Mamtr5Mammary tumor resistance QTL 5mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)51887394763873947Rat
1358353Srcrtb2Stress Responsive Cort Basal QTL 23.480.003blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)51887394774251464Rat
8552954Pigfal14Plasma insulin-like growth factor 1 level QTL 149blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)52122674466226744Rat
1578767Stresp17Stress response QTL 174.30.01blood aldosterone amount (VT:0005346)plasma aldosterone level (CMO:0000551)52795544072955440Rat
1578776Stresp18Stress response QTL 182.9thymus mass (VT:0004954)thymus wet weight (CMO:0000855)52795544072955440Rat
6903292Stl28Serum triglyceride level QTL 282.60.0073blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)52851548973515489Rat
6903306Scl35Serum cholesterol QTL 352.60.0073blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)52851548973515489Rat
2290448Scl54Serum cholesterol level QTL 542.93blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)531663789131345958Rat
1598807Glom12Glomerulus QTL 122.7kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)53321566578215665Rat
1298067Scl15Serum cholesterol level QTL 154.80.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)53321566578215665Rat
1302786Kidm8Kidney mass QTL 828.15kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)53321566578215665Rat
1576317Eutr2Estrogen induced uterine response QTL 20.01uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)534730116104251008Rat
2316959Gluco59Glucose level QTL 594.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)534944474113558310Rat
1641922Alcrsp8Alcohol response QTL 8alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)53518915368564008Rat
1641912Alcrsp18Alcohol response QTL 18response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)535189153141643988Rat
1549845Scl44Serum cholesterol level QTL 446blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)540128307148607290Rat
1331773Scl26Serum cholesterol level QTL 263.065blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)54372665686724018Rat
1331801Rf33Renal function QTL 334.149kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)543726656129132602Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)546711509161317411Rat
1300115Hrtrt7Heart rate QTL 72.76heart pumping trait (VT:2000009)heart rate (CMO:0000002)54786906290099692Rat
9589025Epfw7Epididymal fat weight QTL 720.660.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)54946360094463600Rat
7411561Bw134Body weight QTL 134240.001body mass (VT:0001259)body weight gain (CMO:0000420)54946360094463600Rat
1576312Emca8Estrogen-induced mammary cancer QTL 84.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)550328551141643988Rat
2303615Vencon7Ventilatory control QTL 70.001respiration trait (VT:0001943)respiration rate (CMO:0000289)55098389595983895Rat
2303574Gluco42Glucose level QTL 422blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)55349671998496719Rat
61359EaexExperimental allergic encephalomyelitis QTL x3nervous system integrity trait (VT:0010566)post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)555715622100715622Rat
70189Mcs5Mammary carcinoma susceptibility QTL 510.51mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)555805606132207589Rat
1358895Bp254Blood pressure QTL 2543.60.0003arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)558829236128034027Rat
1598868Mcs12Mammary carcinoma susceptibility QTL 120.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)55897344960051321Rat
61426Scl2Serum cholesterol level QTL 27.30.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)559793399143070159Rat
2316954Rf57Renal function QTL 570kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)55979352890450144Rat
2316957Pur21Proteinuria QTL 216.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)559793528113558156Rat
61386Bp49Blood pressure QTL 4916.6cerebrum integrity trait (VT:0010549)brain infarction volume (CMO:0001013)56029343498603051Rat
61393Bp7Blood pressure QTL 74.50.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)560293434161481680Rat
1598814Mcs13Mammary carcinoma susceptibility QTL 130.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)56319089069927503Rat
2290005Mcs24Mammary carcinoma susceptibility QTL 24mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)564719390109719390Rat
2306971Anxrr21Anxiety related response QTL 219.47fear/anxiety-related behavior trait (VT:1000241)number of entries into a discrete space in an experimental apparatus (CMO:0000960)566174080124160948Rat
2312671Scl64Serum cholesterol level QTL 640.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)568984307104251008Rat
61380Edpm5Estrogen-dependent pituitary mass QTL 54.50.92pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)568984307104251008Rat
1357396Bw44Body weight QTL 444.19body mass (VT:0001259)body weight (CMO:0000012)568984307104251008Rat
1357402Bw46Body weight QTL 464.47body mass (VT:0001259)body mass index (BMI) (CMO:0000105)568984307104251008Rat
2302381Bw84Body weight QTL 844.47body mass (VT:0001259)body mass index (BMI) (CMO:0000105)568984307104251008Rat
1354598Srn6Serum renin concentration QTL 63.8blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)569540295151018848Rat
1598845Mcs14Mammary carcinoma susceptibility QTL 140.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)57636977680813390Rat
6907110Mcs28Mammary carcinoma susceptibility QTL 28mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)57774323978039084Rat
6907115Mcs29Mammary carcinoma susceptibility QTL 29mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)57781615577988860Rat
1298070Scl18Serum cholesterol level QTL 183.7blood LDL cholesterol amount (VT:0000181)calculated plasma low density lipoprotein cholesterol level (CMO:0001245)579584860124584860Rat
1598846Bp293Blood pressure QTL 2933.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)579584860124584860Rat
1598859Cm66Cardiac mass QTL 662heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)579584860124584860Rat
1302790Scl20Serum cholesterol level QTL 206.40.0001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)582394392166664054Rat
1331782Rf36Renal function QTL 363.296kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)58384059897059958Rat
1298086Bp156Blood pressure QTL 156arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)584132602129132602Rat
7411601Foco12Food consumption QTL 1219.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)587468046132468046Rat
7411564Bw135Body weight QTL 1350.001body mass (VT:0001259)body weight gain (CMO:0000420)587468046132468046Rat
7411582Foco3Food consumption QTL 37.50.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)587468046132468046Rat
6903316Bw113Body weight QTL 11320.0103body mass (VT:0001259)body weight (CMO:0000012)587765973132765973Rat
1358889Bp261Blood pressure QTL 2612.86arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)590067849128034027Rat
1358909Kidm25Kidney mass QTL 251.87kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)590067849128034027Rat
631527Tls1T-lymphoma susceptibility QTL 100.001thymus integrity trait (VT:0010555)post-insult time to onset of T-cell lymphoma (CMO:0001907)590450144135450144Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_cross_type intercross  
qtl_general measurement method: right kidney was removed and kept in 10% formalin; 4 micrometer sections were stained with acid-Schiff and observed for patterns of injury 2316856
qtl_general software: MAPMAKER/QTL 2316856