Rf33 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Rf33 (Renal function QTL 33) Rattus norvegicus

Symbol: Rf33
Name: Renal function QTL 33
RGD ID: 1331801
Previously known as: Specialized Center of Research QTL 8; SCOR8
Trait: kidney blood vessel physiology trait   (VT:0100012)    
Measurement Type: absolute change in renal vascular resistance   (CMO:0001900)    
LOD Score: 4.149
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8548,523,123 - 134,369,373RGD_MAPPER_PIPELINE
mRatBN7.2543,726,656 - 129,132,602RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0544,404,276 - 134,502,294RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0549,028,773 - 138,293,117RGDRnor5.0
RGSC_v3.4545,499,364 - 135,916,908RGDRGSC3.4
RGSC_v3.1545,499,544 - 135,916,119RGD
Cross Type: Not Available
Strains Crossed: BN/SsNHsd SS/JrHsdMcwi 
JBrowse: View Region in Genome Browser (JBrowse)
Model




  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Rf33Rathypertension  IAGP 70849 RGD 

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Rf33Ratabnormal renal vascular resistance  IAGP 70849 RGD 
Rf33Ratkidney failure  IAGP 70849 RGD 

Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Rf33Ratabsolute change in renal vascular resistance  IDA 70849 RGD 

Experimental Condition
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Rf33Ratacetylcholine  IEP 70849 RGD 
Rf33Ratcontrolled sodium content diet  IEP 70849 RGD 

Measurement Method
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Rf33Ratelectromagnetic flowmetry  IEP 70849 RGD 

Rat Strain
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Rf33RatBN/SsNHsd  IEA 70849 RGD 
Rf33RatSS/JrHsdMcwi  IEA 70849 RGD 

Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Rf33Ratkidney blood vessel physiology trait  IEP 70849 RGD 


#
Reference Title
Reference Citation
1. A genomic-systems biology map for cardiovascular function. Stoll M, etal., Science 2001 Nov 23;294(5547):1723-6.

Related QTL Description Reference
Rf36 maps to same region RGD:70849
Rf34 maps to same region RGD:70849
Scl26 maps to same region RGD:70849
Rf35 maps to same region RGD:70849
Rf32 maps to same region RGD:70849



1 to 20 of 942 rows
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
41151486LOC120103355U2 spliceosomal RNA54409051344090680Rat
41394701LOC120102847uncharacterized LOC12010284754485879044922780Rat
9283972LOC103692326uncharacterized LOC10369232654599237845995040Rat
41149442LOC120102848uncharacterized LOC12010284854604083146066269Rat
11388087LOC108350944uncharacterized LOC10835094454631252546332473Rat
1309438Map3k7mitogen activated protein kinase kinase kinase 754635697346415597Rat
41237335LOC120103146uncharacterized LOC12010314654643085646432860Rat
41352216LOC120102849uncharacterized LOC12010284954659689946619460Rat
1562865Bach2BTB domain and CNC homolog 254663233846982676Rat
1309630Gja10gap junction protein, alpha 1054699105147002902Rat
41044339LOC120102851uncharacterized LOC12010285154699298847009537Rat
1305771Casp8ap2caspase 8 associated protein 254701450147052276Rat
1306394Mdn1midasin AAA ATPase 154705543547190426Rat
1583731Ankrd6ankyrin repeat domain 654719798147343183Rat
1597334Lyrm2LYR motif containing 254719819247200470Rat
9434881Ggact-ps3gamma-glutamylamine cyclotransferase, pseudogene 354734324847355132Rat
1310007RragdRas-related GTP binding D54737390247409369Rat
11389431LOC108350947uncharacterized LOC10835094754741423947422384Rat
1305067Ube2j1ubiquitin-conjugating enzyme E2, J154742247647441476Rat
7504318Rpp38-ps1ribonuclease P/MRP subunit p38, pseudogene 154744411947445294Rat

1 to 20 of 942 rows
1 to 20 of 1301 rows
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Expected Size
Chr
Start
Stop
Species
Match
10262D5Rhm31335119564714119564847Ratregion
10263D5Rhm41455119592239119592384Ratregion
10321D5Lev171235103991975103992098Ratregion
10324D5Lev191835124411616124411799Ratregion
10453D5Mcw15128924597128924722Ratregion
10453D5Mcw15129098900129099033Ratregion
10454D5Wox121185128924607128924723Ratregion
10454D5Wox121185129098910129099034Ratregion
10826D5Mgh231285109897808109897936Ratregion
10827D5Lev152925109894810109895102Ratregion
10931D5Wox1322657516579275166041Ratregion
11090D5Rhm21685114659557114659726Ratregion
33804D5Mit62125117817033117817245Ratregion
33836D5Mit912156029343460293557Ratregion
33921D5Mit219456928513369285327Ratregion
33967D5Mit329658108229081082586Ratregion
33981D5Mit426659045014490450412Ratregion
33985D5Mit1113358361072983610862Ratregion
34041D5Mit51445104250862104251008Ratregion
34047D5Mit113655596227855962414Ratregion
1 to 20 of 1301 rows

Flank 1: (D5Mgh5)
Rat AssemblyChrPosition (strand)Source
GRCr8548,523,123 - 48,523,299 (+)Marker Load Pipeline
mRatBN7.2543,726,656 - 43,726,832 (+)MAPPER
Rnor_6.0544,404,276 - 44,404,451NCBI
Rnor_5.0549,028,773 - 49,028,948UniSTS
RGSC_v3.4545,499,364 - 45,499,540RGD
RGSC_v3.4545,499,365 - 45,499,540UniSTS
RGSC_v3.1545,499,544 - 45,499,719RGD
Celera542,531,874 - 42,532,049UniSTS
RH 3.4 Map5230.1UniSTS
RH 3.4 Map5230.1RGD
RH 2.0 Map5264.8RGD
SHRSP x BN Map522.8299RGD
Cytogenetic Map5 RGD
Peak: (D5Mgh23)
Rat AssemblyChrPosition (strand)Source
GRCr85115,013,533 - 115,013,661 (+)Marker Load Pipeline
mRatBN7.25109,897,808 - 109,897,936 (+)MAPPER
Rnor_6.05114,014,818 - 114,014,945NCBI
Rnor_5.05117,961,364 - 117,961,491UniSTS
RGSC_v3.45115,361,799 - 115,361,927RGD
RGSC_v3.45115,361,800 - 115,361,927UniSTS
RGSC_v3.15115,367,025 - 115,367,153RGD
Celera5108,513,674 - 108,513,801UniSTS
RH 3.4 Map5779.4UniSTS
RH 3.4 Map5779.4RGD
RH 2.0 Map5702.5RGD
Cytogenetic Map5q34.1UniSTS
Flank 2: (D5Rjr1)
Rat AssemblyChrPosition (strand)Source
GRCr85134,369,199 - 134,369,373 (+)Marker Load Pipeline
mRatBN7.25129,132,428 - 129,132,602 (+)MAPPER
Rnor_6.05134,502,121 - 134,502,294NCBI
Rnor_5.05138,292,944 - 138,293,117UniSTS
RGSC_v3.45135,900,621 - 135,916,908RGD
RGSC_v3.45135,910,720 - 135,910,893UniSTS
RGSC_v3.15135,915,945 - 135,916,119RGD
Celera5127,670,120 - 127,670,293UniSTS
RH 3.4 Map5837.2UniSTS
RH 3.4 Map5837.2RGD
Cytogenetic Map5q36UniSTS


1 to 10 of 112 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1578776Stresp18Stress response QTL 182.9thymus mass (VT:0004954)thymus wet weight (CMO:0000855)52795544072955440Rat
1549845Scl44Serum cholesterol level QTL 446blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)540128307148607290Rat
1358353Srcrtb2Stress Responsive Cort Basal QTL 23.480.003blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)51887394774251464Rat
61452Ciaa5CIA Autoantibody QTL 53.5blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)594858972143070159Rat
70156Niddm30Non-insulin dependent diabetes mellitus QTL 303.98blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)5129132447151006154Rat
7411582Foco3Food consumption QTL 37.50.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)587468046132468046Rat
1302786Kidm8Kidney mass QTL 828.15kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)53321566578215665Rat
1302790Scl20Serum cholesterol level QTL 206.40.0001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)582394392166664054Rat
61462Niddm10Non-insulin dependent diabetes mellitus QTL 103.90.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)5511215947171491Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)546711509161317411Rat

1 to 10 of 112 rows


Database
Acc Id
Source(s)
NCBI Gene Rf33

Note Type Note Reference
qtl_general change in renal vascular resistance from acetylcholine dose 2 minus pre-Ach control (SCOR8) 70849
qtl_general additional information, including phenotype and mapping information, can be found at A genomics-systems biology map for cardiovascular function 70849