Snx30 (sorting nexin family member 30)

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Gene: Snx30 (sorting nexin family member 30) Rattus norvegicus

Analyze

Symbol:

Snx30

Name:

sorting nexin family member 30

RGD ID:

1311367

Description:

Predicted to have phosphatidylinositol binding activity. Predicted to be involved in protein transport. Orthologous to human SNX30 (sorting nexin family member 30); INTERACTS WITH 17alpha-ethynylestradiol; acetamide; amphetamine.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Also known as:

LOC298033; RGD1311367; similar to Sorting nexin 7; sorting nexin-30

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	5	74,683,902 - 74,813,013 (+)	NCBI
Rnor_6.0 Ensembl	5	77,052,484 - 77,157,915 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	5	77,052,445 - 77,161,964 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	5	81,185,823 - 81,292,332 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	77,924,034 - 78,037,119 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	5	77,929,367 - 78,042,520 (+)	NCBI
Celera	5	73,498,886 - 73,602,194 (+)	NCBI		Celera
Cytogenetic Map	5	q24	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

17alpha-ethynylestradiol (EXP)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

acetamide (EXP)

amphetamine (EXP)

Aroclor 1254 (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

calcitriol (ISO)

cyclosporin A (ISO)

daidzein (ISO)

daidzein 7-O-beta-D-glucoside (ISO)

genistein (ISO)

genistein 7-O-beta-D-glucoside (ISO)

glycitein (ISO)

glycitin (ISO)

pregnenolone 16alpha-carbonitrile (ISO)

sodium arsenate (ISO)

sunitinib (ISO)

tetrachloromethane (EXP,ISO)

trichloroethene (EXP)

urethane (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

protein transport (IEA)

Molecular Function

phosphatidylinositol binding (IEA)

protein binding (ISO)

References

References - curated


1.	MGD data from the GO Consortium
2.	RGD automated data pipeline
3.	RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data

Snx30
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	5	74,683,902 - 74,813,013 (+)	NCBI
Rnor_6.0 Ensembl	5	77,052,484 - 77,157,915 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	5	77,052,445 - 77,161,964 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	5	81,185,823 - 81,292,332 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	77,924,034 - 78,037,119 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	5	77,929,367 - 78,042,520 (+)	NCBI
Celera	5	73,498,886 - 73,602,194 (+)	NCBI		Celera
Cytogenetic Map	5	q24	NCBI

SNX30
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	9	112,750,760 - 112,881,671 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	9	112,749,723 - 112,875,847 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	9	115,513,040 - 115,637,267 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	114,552,955 - 114,677,088 (+)	NCBI	NCBI36		hg18	NCBI36
Celera	9	86,330,021 - 86,454,125 (-)	NCBI
Cytogenetic Map	9	q32	NCBI
HuRef	9	85,110,784 - 85,235,103 (+)	NCBI		HuRef
CHM1_1	9	115,660,589 - 115,784,556 (+)	NCBI		CHM1_1

Snx30
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	59,805,137 - 59,904,740 (+)	NCBI	GRCm39		mm39
GRCm39 Ensembl	4	59,805,840 - 59,904,737 (+)	Ensembl
GRCm38	4	59,805,131 - 59,904,740 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	59,805,840 - 59,904,737 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	59,818,522 - 59,917,612 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	4	59,899,704 - 59,998,794 (+)	NCBI			mm8
Celera	4	59,722,562 - 59,821,429 (+)	NCBI		Celera
Cytogenetic Map	4	B3	NCBI

Snx30
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955419	14,567,317 - 14,619,637 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955419	14,567,317 - 14,645,442 (-)	NCBI	ChiLan1.0	ChiLan1.0

SNX30
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	9	112,031,879 - 112,150,074 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	9	112,031,860 - 112,143,933 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	9	83,878,128 - 83,997,124 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

SNX30
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	11	67,233,256 - 67,289,224 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	11	67,233,469 - 67,294,159 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Snx30
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936559	684,536 - 792,829 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SNX30
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	253,428,508 - 253,550,375 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	253,428,461 - 253,555,463 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	284,234,538 - 284,364,775 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SNX30
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	26,650,088 - 26,774,395 (-)	NCBI
ChlSab1.1 Ensembl	12	26,656,221 - 26,774,009 (-)	Ensembl

Snx30
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624760	22,138,646 - 22,261,392 (-)	NCBI

QTLs in Region (Rnor_6.0)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1331771	Rf35	Renal function QTL 35	4.36965		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	5	1	89432042	Rat
1331756	Rf34	Renal function QTL 34	4.16275		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	5	1	93273395	Rat
70212	Niddm25	Non-insulin dependent diabetes mellitus QTL 25	3.54		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	1	136640934	Rat
1576314	Eutr1	Estrogen induced uterine response QTL 1			uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	1525098	78720537	Rat
7394712	Emca13	Estrogen-induced mammary cancer QTL 13			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	9514842	103580403	Rat
634305	Mamtr1	Mammary tumor resistance QTL 1		0.0001	mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	12651967	117554267	Rat
2290448	Scl54	Serum cholesterol level QTL 54	2.93		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	31926122	136640934	Rat
1298067	Scl15	Serum cholesterol level QTL 15	4.8	0.001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	34402409	79402409	Rat
1302786	Kidm8	Kidney mass QTL 8	28.15		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	5	34402409	79402409	Rat
1598807	Glom12	Glomerulus QTL 12	2.7		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	5	34402409	79402409	Rat
1576317	Eutr2	Estrogen induced uterine response QTL 2		0.01	uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	35225432	108092802	Rat
2316959	Gluco59	Glucose level QTL 59	4.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	35661945	117554267	Rat
1641912	Alcrsp18	Alcohol response QTL 18			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	5	35788756	147487820	Rat
1549845	Scl44	Serum cholesterol level QTL 44	6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	40777918	154732375	Rat
1331773	Scl26	Serum cholesterol level QTL 26	3.065		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	44404276	89432042	Rat
1331801	Rf33	Renal function QTL 33	4.149		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	5	44404276	134502294	Rat
1578766	Tcas11	Tongue tumor susceptibility QTL 11	4.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	5	47745646	167946134	Rat
1300115	Hrtrt7	Heart rate QTL 7	2.76		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	5	48722038	93587756	Rat
1576312	Emca8	Estrogen-induced mammary cancer QTL 8	4.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	51418671	147487820	Rat
9589025	Epfw7	Epididymal fat weight QTL 7	20.66	0.001	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	5	51804426	96804426	Rat
7411561	Bw134	Body weight QTL 134	24	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	51804426	96804426	Rat
2303615	Vencon7	Ventilatory control QTL 7		0.001	respiration trait (VT:0001943)	respiration rate (CMO:0000289)	5	53309568	98309568	Rat
2303574	Gluco42	Glucose level QTL 42	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	55903593	100903593	Rat
61359	Eaex	Experimental allergic encephalomyelitis QTL x	3		nervous system integrity trait (VT:0010566)	post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)	5	56902367	101902367	Rat
70189	Mcs5	Mammary carcinoma susceptibility QTL 5	10.51		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	56991667	137729065	Rat
1358895	Bp254	Blood pressure QTL 254	3.6	0.0003	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	5	60072951	133313852	Rat
61426	Scl2	Serum cholesterol level QTL 2	7.3	0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	61086525	149030144	Rat
2316954	Rf57	Renal function QTL 57	0		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	5	61086653	93273130	Rat
2316957	Pur21	Proteinuria QTL 21	6.2		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	5	61086653	117554114	Rat
61386	Bp49	Blood pressure QTL 49	16.6		cerebrum integrity trait (VT:0010549)	brain infarction volume (CMO:0001013)	5	61612600	102331727	Rat
61393	Bp7	Blood pressure QTL 7	4.5	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	61612600	168109659	Rat
2306971	Anxrr21	Anxiety related response QTL 21	9.47		fear/anxiety-related behavior trait (VT:1000241)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	5	65696672	129038896	Rat
2290005	Mcs24	Mammary carcinoma susceptibility QTL 24			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	68838385	113838385	Rat
1357396	Bw44	Body weight QTL 44	4.19		body mass (VT:0001259)	body weight (CMO:0000012)	5	71154828	108092802	Rat
1357402	Bw46	Body weight QTL 46	4.47		body mass (VT:0001259)	body mass index (BMI) (CMO:0000105)	5	71154828	108092802	Rat
2312671	Scl64	Serum cholesterol level QTL 64		0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	71154828	108092802	Rat
2302381	Bw84	Body weight QTL 84	4.47		body mass (VT:0001259)	body mass index (BMI) (CMO:0000105)	5	71154828	108092802	Rat
61380	Edpm5	Estrogen-dependent pituitary mass QTL 5	4.5	0.92	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	5	71154828	108092802	Rat
1354598	Srn6	Serum renin concentration QTL 6	3.8		blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	5	71552569	157225114	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	486
Count of miRNA genes:	241
Interacting mature miRNAs:	290
Transcripts:	ENSRNOT00000059419
Prediction methods:	Microtar, Miranda
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium			3	2	12	2			56	16	8	11
Low	3	43	54	39	7	39	8	11	18	19	32		8
Below cutoff											1

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001106651	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039109447	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039109448	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039109449	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH474039	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000161	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000059419 ⟹ ENSRNOP00000056176

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	5	77,052,484 - 77,157,915 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000087254 ⟹ ENSRNOP00000069076

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	5	77,052,508 - 77,156,572 (+)	Ensembl

RefSeq Acc Id:

NM_001106651 ⟹ NP_001100121

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	74,684,020 - 74,792,631 (+)	NCBI
Rnor_6.0	5	77,052,484 - 77,157,915 (+)	NCBI
Rnor_5.0	5	81,185,823 - 81,292,332 (+)	NCBI
RGSC_v3.4	5	77,924,034 - 78,037,119 (+)	RGD
Celera	5	73,498,886 - 73,602,194 (+)	RGD

Sequence:

show sequence

GTGGGCGGCGTGGCGCTGCTACCAGGGCGCAGGGCCGTAGGTGCTGGGGATCGCGGCGACTTAG
CCCACGGATCTGCGGTGTGTTGCTCAGGAAAGCTCATCCTCCCGGGCAGGAGAAGCATCGGGCG
AAGGCTGCCCCCACCGACTAGTGCAGGGCCTCAGGCCGAGTAGGGCCGAGAGCTACGGGAGTAA
GCGGCGGCGGGTCCCGAGCGCAGCGCGCCATGGCGGGCGGGCCCCCCAAGGCCCTGCCGTCCAC
GGGGCCCCAGTCCTTGCGCGACATGCCCCACCCGCTAGCGGGCTCCAGCAGCGAGGAGGCCGTG
GGAGGCGACAGCACGCCCAGCCCGGACCTACTGATGGCCCGCAGCTTCGGTGACAAGGATCTCA
TCTTGCCCAATGGTGGTACTCCAGCAGGCACTTCAAGCCCAGCTTCTTCATCTTCGCTTTTGAA
CAGACTTCAGCTGGATGATGACATTGATGGTGAAACCAGAGATCTCTTTGTCACAGTTGATGAT
CCCAAGAAGCATGTCTGCACAATGGAGACCTACATCACGTACAGGATCACCACCAAAAGCACAC
GGGTGGAGTTTGACTTGCCAGAGTATTCCGTTCGTCGACGATACCAGGATTTCGACTGGTTGAG
GAACAAACTGGAAGAGTCGCAGCCCACTCATCTCATTCCCCCACTTCCTGAGAAGTTTGTGGTG
AAGGGTGTCGTGGATCGTTTTTCAGAAGAGTTTGTGGAGACCAGAAGAAAAGCGTTGGACAAAT
TCCTAAAAAGGATTACAGATCACCCAGTGCTCTCTTTCAATGAACACTTCAATGTGTTCCTCAC
TGCTAAGGACCTGAATGCCTACAAGAAGCAGGGGATAGCACTGCTGACCAGAGTGGGGGAGTCG
GTCAAGCATGTCACTGGAGGCTACAAGCTGCGGAGTCGGCCTCTGGAGTTTGCAGCCATCGGTG
ACTACTTAGACACTTTTGCACTCAAACTGGGAACCATTGATCGGATAGCCCAGCGGATCATCAA
AGAAGAAATAGAGTACCTCGTGGAGCTGAGGGAGTATGGGCCTGTGTATTCCACGTGGAGCGCC
TTGGAAGGTGAGCTGGCGGAGCCCCTGGAGGGTGTGTCAGCCTGCATTGGGAACTGCTCCACAG
CCTTGGAAGAGCTGACGGATGACATAACAGAAGAGTTTCTGCCTGTGCTCAGGGAATACATTCT
ATACTCTGACTCCATGAAGGGTGTGTTGAAGAAGAGGGACCAAGTTCATGCAGAGTATGAAGCC
AAACTGGAAGCTGTGGCTCTGAGGAAAGAAGATCGCCCCAAGGTGCCAGCAGATGTGGAGAAGT
GCCAGGACAGGATGGAGTGCTTCAACGCAGACCTGAAGGCTGATATGGAGAGGTGGCAGGGCAA
CAAGCGAAATGACTTCCGGCAGCTGCTCGTGGGCTTGGCTGACAAGAATATCCAGTATTATGAG
AAGTGCCTCATGGCGTGGGAGTCGATTATTCCACTACTGCAAGAGAAACAAGAGGCCAAGTAGC
TTTGGTTTTGGAGAAAAGACTCTTCTGCCTCCACAGGGCATGGTACCCTGAACCTGAATGTCCC
TGCAGTGCCGGAGAGGTCGCCGTGGGAAAACAGCACAACACCACCTCTTGAGTGTGTACTTTCT
CCCCACCCACCCCCAGTCGTTTTCAGTTAGTATTTATTCCTTGGAGTCTGTGAGGCTGTAATCA
TCTCTCAGCAGAAGCATACCTCCATATTGTGAAGGAACCTCTTAATGGAACACTATGAAGACTT
TTGAAACTGAGGGGCAGGATAACCCCCACTTGACCTGTGACATCACTTTGGGAGCATCCCAGTT
GCCATTGTGGGACAGAACCCCAGTCCTGCATTTCGGGGACATGGGGAGGCATGAAGAGGGCAGC
TGCGGCTTGCTGTGGAGACATCTTAGCTCTGCACTTTACCCGTGAGGGCATTAATGTGACCCAG
CATGGAAGGAGGTGTAGGTACCTTCTCTCTCGGAAAGTCCTTAATTTACAGTGGCCTGTGGCTG
TGGCTGCGGCTCTGGCTGTGGCTGTGGCTGTGGCAGGTCTACTGCCTGCTCGTGATGAGTGGCA
TCTATGTACTTGTTTCTGGTTCACACGGGGCCACCTAAATCTGTGTCTGGGAGCATCGATGCTT
GAGTGAGCAAGCCAGCGTCCTTGTCCTTAATGGATGCCTCAGGATCTTGTTTCTGACCCCAGAA
TGCAGCAGAGGAGAAGCTTTTTGGTGTGAACTGGATAAAAAAAGGTGCATTTTTCTCTGTGAAG
GTCTTGGTGTGTGTGTTTTCCGTGTTAACTGTCATCATGGTTGGGATTAGACCTGTTTGCAAAC
AGCTGCTGTCAATGACACTCCTGTGTGCCAAGCCCCAGCTCTGATGTCTGCTTTGTGCAATTTG
CCTTTACTTCACCAAAAATGTCTCATTTAATCTGTCTGCCATGCCCGCTGACTGTCTGGGCAGC
CTTGCGGTGAGGGCTGTGTGCTGCATTATTGCTGTCACTATGTGTAAACTCAGTGTGACTGCTC
TACATGAGTGTTTTAACCCTCACGATTCTGTGGCCAGAAAGAAAACAGCATCTGCAGGTCCCTC
AGAGACGAGAAGAGTGAGCGACATCGTGCTCTTTGCTTCTGGCTATGTAGAAATCCTCATTTGT
AGCTAAAATCTGGGGGCTGCAGCTGTGCTTAAAGTCTTCATTTGAAGCTTTCCAAATTGCCATA
AGCCAACAATCAGAAAGAATCTCTCTCTTCCATACCGTTGCTCTTGCTAAAAAGAAGCTGCATT
TTTGTGTTCTTTTATCTCTGGCTCTTTGCTAAAAATCCCTAGATCTGGCTGCAGGTATACGGAA
GGGGCTTTGTTTTTAAGGCGAAGCAGTCAAGCACTGCCTCATATACAAGTTCATTTGCAAATCC
AATCATCATCCAGCATGCTAAGTCCTGTAATTCCCTCTAATATGGAGTCAGCTGCATTGGGGAC
ACCATGGGACCGCAGGTAGACAGCATGAAGCAATTGTCCTCTCAGATTTGACAGATCCGTGATA
GAGATAATAATCCCCACATCTATCGGTACTTGCCCAAACCTATCTGTGCCACCCCA

hide sequence

RefSeq Acc Id:

XM_017593239 ⟹ XP_017448728

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	5	77,052,445 - 77,161,964 (+)	NCBI

Sequence:

show sequence

CGGGCCCGCAGAGGCTCCGCGGGGGCGGGGCTGCGAGCCGTGGGCGGCGTGGCGCTGCTACCAG
GGCGCAGGGCCGTAGGTGCTGGGGATCGCGGCGACTTAGCCCACGGATCTGCGGTGTGTTGCTC
AGGAAAGCTCATCCTCCCGGGCAGGAGAAGCATCGGGCGAAGGCTGCCCCCACCGACTAGTGCA
GGGCCTCAGGCCGAGTAGGGCCGAGAGCTACGGGAGTAAGCGGCGGCGGGTCCCGAGCGCAGCG
CGCCATGGCGGGCGGGCCCCCCAAGGCCCTGCCGTCCACGGGGCCCCAGTCCTTGCGCGACATG
CCCCACCCGCTAGCGGGCTCCAGCAGCGAGGAGGCCGTGGGAGGCGACAGCACGCCCAGCCCGG
ACCTACTGATGGCCCGCAGCTTCGGTGACAAGGATCTCATCTTGCCCAATGGTGGTACTCCAGC
AGGCACTTCAAGCCCAGCTTCTTCATCTTCGCTTTTGAACAGACTTCAGCTGGATGATGACATT
GATGGTGAAACCAGAGATCTCTTTGTCACAGTTGATGATCCCAAGAAGCATGTCTGCACAATGG
AGACCTACATCACGTACAGGATCACCACCAAAAGCACACGGGTGGAGTTTGACTTGCCAGAGTA
TTCCGTTCGTCGACGATACCAGGATTTCGACTGGTTGAGGAACAAACTGGAAGAGTCGCAGCCC
ACTCATCTCATTCCCCCACTTCCTGAGAAGTTTGTGGTGAAGGGTGTCGTGGATCGTTTTTCAG
AAGAGTTTGTGGAGACCAGAAGAAAAGCGTTGGACAAATTCCTAAAAAGGATTACAGATCACCC
AGTGCTCTCTTTCAATGAACACTTCAATGTGTTCCTCACTGCTAAGGACCTGAATGCCTACAAG
AAGCAGGGGATAGCACTGCTGACCAGAGTGGGGGAGTCGGTCAAGCATGTCACTGGAGGCTACA
AGCTGCGGAGTCGGCCTCTGGAGTTTGCAGCCATCGGTGACTACTTAGACACTTTTGCACTCAA
ACTGGGAACCATTGATCGGATAGCCCAGCGGATCATCAAAGAAGAAATAGAGTACCTCGTGGAG
CTGAGGGAGTATGGGCCTGTGTATTCCACGTGGAGCGCCTTGGAAGGTGAGCTGGCGGAGCCCC
TGGAGGGTGTGTCAGCCTGCATTGGGAACTGCTCCACAGCCTTGGAAGAGCTGACGGATGACAT
AACAGAAGAGTTTCTGCCTGTGCTCAGGGAATACATTCTATACTCTGACTCCATGAAGGGTGTG
TTGAAGAAGAGGGACCAAGTTCATGCAGAGTATGAAGCCAAACTGGAAGCTGTGGCTCTGAGGA
AAGAAGATCGCCCCAAGGTGCCAGCAGATGTGGAGAAGTGCCAGGACAGGATGGAGTGCTTCAA
CGCAGACCTGAAGGCTGATATGGAGAGGTGGCAGGGCAACAAGCGAAATGACTTCCGGCAGCTG
CTCGTGGGCTTGGCTGACAAGAATATCCAGTATTATGAGAAGCCTTGGAGTACCAAACTGTAAG
TATTTAACTGATAGAACCATCAGTCTGGATTGTTCCCACACAGCCAGCTTAGGAGACAGGGGTC
TTTTGGCGACAGTCCTGCCTCCCCAAAGGTAGGAAGCTCTCTCCAAGGGAAGTCGGCCTCCTCC
TGCTGGCCGTGGGTTGGGTGAGGCACCTGCCTATCCTCTCAGTCTTCATTGGTCAGTGCTAATC
ATTCTTTGCAGGATAATTGCAAAGGCAAAGTAAAAATGCACTGCAAGTTTCCAGAGTGTACCAA
CATGAGGCAGATGCTCAACTTAAAGTTAACCTCAATGCTCTTACCTCACAGTCCAAAACCAGCC
AGGCCCAGTGCCTCCATGCCGGTTGTGGATGAACTCACCATCTCTAAACTCCCAGAGTGCAGAC
TCAGGGCTTGCATCTGTTTCTTCCCATTGTACTGCAGACAGGGCCTGTCTGAGGCCTGGCCTCG
GCTTCTCTGCACTTTTCATATGCAAGGGATTCTGTAGAGAGCTGATAAATGGCAGACTTGCACA
GCCCTGTAGCATCCTGAGTCCATCAGAGAAGCATTAATGATAGATTCCCAGGGGTAAGGGGGAA
ATAAGCCTGCTAAAGGGAAGAAGCAAGGACAAAAGTACTTGGGGCCAGGGGAGTGGTCAGGAAA
GACCAGCCTATGGAATCTTGGAGCAGCCTTATGTTAGAATCAAAGATCTGATGAACATATACTC
TGGGCAGAGGGAACGACATATGCAAGTCCCAAGTAAGTCATTTGATGACTGCAAAGAATGGTCA
GCATGTTCCTCTTGGGATAGGAAGAAAGACCCTTGCAGTTATGAGGGGTGGCCTTGAATTTAGA
ATACTATGGGCCTCCTTCCAGTCCATGGCTGGAAGCAAGCTCCTTGGGGCTGACTAGTCTTCCC
TTGTTTAGGACAGGCTTCTCAGTCTGGCTTCTTCACCAGCCTCAGAGTGGCCAAGGAAGGTCTG
AGAGAGAGGTTTCGCCACTCCTCTTTCTGCTTGACCTCACGCTGCCTCTCTCCACCCATCCCTG
CAGACCTCCTCCCCAGGTGACTCAGGGCAGAGCTCTTCCTCACCCTAAGTCTGTCTAGTACAGT
GGGCTTGCCCTTCCCTTTTGCAAAAGGCTTTTCAGAGGGAGAGATGTGTCTGCTGGGTCAGCCA
CTCTCAGGCAGTACCCAAGTCTTCTAAGTTCTTGTCCTGTCAGAAGGATCTGGAATGAAAGGAG
CATCTGTGGGCATTCATATTCTGTGACCCATATGATAATGACTATAAAATACACGGCAGGACAT
GGGCCTAAGAACACCTGAGTTTGGGGCCAGTGCGTGGGTCACTGGGGTGGTAAAGGTGCTTACT
GCCGAGCCTCACAGCCTGTGTTTGATCCCTGGAACCTTAAAGTTGTCCTCTGTCCTCCACAAGC
ATGTCATGGTATGTGTGCCCTCACCCTTCACATACACAGAAATAAATGTAAAGACTGCCAGACT
CCCTGCTCCCCAATCTTTGGGGAATATATAAAAGTGGCCCAAACCAGCAAAACCAAACTTTAGG
TGACAAGAGCTTTTGCCACCCACCCTGATTCAGGCGTCTGGTCACTCTGTGTTTCCATCCTTAC
ACAAGCCCCATACCTTCAGCAATGCCTCTATCAGTTCTCAGAACTGGTGTCCTCACCAACAGTT
TCCTGCCTAGTCTGGTTTTTGCTTAGGTAAAGATTTTCTTAGCGTGGATTCTTTGCACTCTTGG
GTGTTGGCTCCACACTATCACGAAGGCCTACAGGCCTTGTAAACACATGGCTCCTTCATAAAGA
TAAGAGGACGGATTTCAGACAAACACCTGTCATGCATGTCCCCTATCGATAACAGTATTGATGT
CCCCTATTGATAACAGTATTGATAGCAGACGTAGGCACCACTAGCAGGTGGCCCAGCAGGGTCA
GGATTTGGCAGCTGACCTTGTGTGCTGCTCTCGTTCCAGTGCCTCATGGCGTGGGAGTCGATTA
TTCCACTACTGCAAGAGAAACAAGAGGCCAAGTAGCTTTGGTTTTGGAGAAAAGACTCTTCTGC
CTCCACAGGGCATGGTACCCTGAACCTGAATGTCCCTGCAGTGCCGGAGAGGTCGCCGTGGGAA
AACAGCACAACACCACCTCTTGAGTGTGTACTTTCTCCCCACCCACCCCCAGTCGTTTTCAGTT
AGTATTTATTCCTTGGAGTCTGTGAGGCTGTAATCATCTCTCAGCAGAAGCATACCTCCATATT
GTGAAGGAACCTCTTAATGGAACACTATGAAGACTTTTGAAACTGAGGGGCAGGATAACCCCCA
CTTGACCTGTGACATCACTTTGGGAGCATCCCAGTTGCCATTGTGGGACAGAACCCCAGTCCTG
CATTTCGGGGACATGGGGAGGCATGAAGAGGGCAGCTGCGGCTTGCTGTGGAGACATCTTAGCT
CTGCACTTTACCCGTGAGGGCATTAATGTGACCCAGCATGGAAGGAGGTGTAGGTACCTTCTCT
CTCGGAAAGTCCTTAATTTACAGTGGCCTGTGGCTGTGGCTGCGGCTCTGGCTGTGGCTGTGGC
TGTGGCAGGTCTACTGCCTGCTCGTGATGAGTGGCATCTATGTACTTGTTTCTGGTTCACACGG
GGCCACCTAAATCTGTGTCTGGGAGCATCGATGCTTGAGTGAGCAAGCCAGCGTCCTTGTCCTT
AATGGATGCCTCAGGATCTTGTTTCTGACCCCAGAATGCAGCAGAGGAGAAGCTTTTTGGTGTG
AACTGGATAAAAAAAGGTGCATTTTTCTCTGTGAAGGTCTTGGTGTGTGTGTTTTCCGTGTTAA
CTGTCATCATGGTTGGGATTAGACCTGTTTGCAAACAGCTGCTGTCAATGACACTCCTGTGTGC
CAAGCCCCAGCTCTGATGTCTGCTTTGTGCAATTTGCCTTTACTTCACCAAAAATGTCTCATTT
AATCTGTCTGCCATGCCCGCTGACTGTCTGGGCAGCCTTGCGGTGAGGGCTGTGTGCTGCATTA
TTGCTGTCACTATGTGTAAACTCAGTGTGACTGCTCTACATGAGTGTTTTAACCCTCACGATTC
TGTGGCCAGAAAGAAAACAGCATCTGCAGGTCCCTCAGAGACGAGAAGAGTGAGCGACATCGTG
CTCTTTGCTTCTGGCTATGTAGAAATCCTCATTTGTAGCTAAAATCTGGGGGCTGCAGCTGTGC
TTAAAGTCTTCATTTGAAGCTTTCCAAATTGCCATAAGCCAACAATCAGAAAGAATCTCTCTCT
TCCATACCGTTGCTCTTGCTAAAAAGAAGCTGCATTTTTGTGTTCTTTTATCTCTGGCTCTTTG
CTAAAAATCCCTAGATCTGGCTGCAGGTATACGGAAGGGGCTTTGTTTTTAAGGCGAAGCAGTC
AAGCACTGCCTCATATACAAGTTCATTTGCAAATCCAATCATCATCCAGCATGCTAAGTCCTGT
AATTCCCTCTAATATGGAGTCAGCTGCATTGGGGACACCATGGGACCGCAGGTAGACAGCATGA
AGCAATTGTCCTCTCAGATTTGACAGATCCGTGATAGAGATAATAATCCCCACATCTATCGGTA
CTTGCCCAAACCTATCTGTGCCACCCCAGAGCCCTTGCTGTGAATTGTCTGTGGTACAAATAGA
AAAGGCCCACTGAAGCAGAAGAGTAAGAACAGTCTGTACACCCCACCTCCAGCGAGTCGGCGTC
TCATTCTACCTCCAAACCACCGGGCTGGTGTGGGTACGCTCAGAGTCAACCAGAACGTGGGAGA
GTCAGGGCATGCGTTTGGTTACCAACAGACCTCCATCCATGCGTATCAGAGGACACCAGACTCG
CCAGAGGTGATGTCCATCTTTGGGAAACATGAGGCTTTGCCTTGTGGACTGTATGCTTGATACT
TGCACAGTGATGTAATGATGAACACAGTGATGTAATGATGCATACAGTGATGTAATGATGCATA
TAGTGATGTAATGATGCATACAGTGATATAATGTAGAAAGAACTAAAGAAAGAATTATGATGAA
GCTAAAATCTGATGACCAGCTAGTTGCCAAAACCCCACGTCAATCCCGTGTGCTGGTTAGTTAC
ACAAGAAGAAAGTCCCATAGAAACAGCCTCCGGTTGCACTGGAAAATGTATGGAGGGAAGCGTG
GTCCTCAGCCATTCCCTCATGAGAGATGGTTCTCATGGCATCTTGAAGTGTTTGTCTTGTGCTG
TTTATTTGGTTGGTAGGCAATGTCCCTGGGCTTTGAGTTTCCAGAAAGAGCTGGGATAATGGAG
ACTTTCCAGTTGGAACAATGTCAGTGGTAGAGCCAGGGACACCCATGCACAAGAAGCGCTCTTG
TCTCTCTCTTCAGGATGGCAGCTGGTAAACTGAGGAGGCTGGCCTGAAGAAAAGGGGCAGGAGA
CAGTGAAGGAGGCCTTCCACTTCCCTGCTCCTGAGGCTCTCTCAGTCCCTGGAAACTCACCAGT
CAGAAGCATCACAAAAAAGATTCCCTACATGAAGCATAGCTCAGATACTACAGTGCCAAAATGC
CCCCAGAGAGGCTCCGTTACTTCTGGAGCCTCAGAGCCTTTGCCCTGAAGTCACAGGTTCCTCT
GACTTATTTTCCATGAGACTTTGCCTTGAGGGTATCACGGGCAGAGGGATAGCCATAGCTGTTG
AGGCTTGAACACATGCTGGTGAGATGAAAGTTGGCCATAGCAACTGCCCAGGTCCTGAGAAACG
GAGGGCTTCTTCACCGTGTTAGAAACCTGCAAAGGCAAAAGAGAATTCTTAAAGCCAAGGAGAT
TTGAGAGACTTGATTGTTTAGGACACAGTTGTGGTTTGTAGCAAGAAAGGGTACTACTGATGTT
GGGAATTTAAAAGAAGAATCTAGGCTGTGCTGCTCAAAACAAGAAGGCTTTGCTCTGCAGTGAG
AGGGGAATGACCCCTCAGCCTGTGTGGGGCCAGGTTTCACCCACTCCTAAGCTCAGCAGTGATT
GAGCACGGTTCGGATGGGCTGGCACTTCTCCAAGCTGCTGCTCACCTCACCAGATATTTCCCTT
AGCTGAATGAAGAAAACCTAGCCTGCCTGGGATAGGAGCGGGATGTAAGACACATCTCTCTTTA
TACCAAATGGAGTGGGCCCTAGTTGTTGAGTAGAATGTGCTCTTTTAGCCTGTAAACAGGAGGA
AACCGTGTGTGAACACTACAGCCTCTGGGGAGGGCCCTGTGGACATTTTAATTTTAGAAGTGGG
CATGACGACAGTGTTTGTCTTTTGGGACAACACCCACAAAGCACTCAGAGGCCGCGTGACTTGT
CCTGTCCTGTGGCACTGAAGCTGTAGGAAGCTGGCTGTTTCGATGAGGTCATTTGAGTCAAGGG
AGCTCATGAGCTCACTGGGGTGTGTAGAGGAAGGCAAGGACTGCCTGAGAGGCTGTGTTGGCCC
TCCTGATTTGGGTCTTGGGATGGGTTGGAACAGGGTTCTTGTCAGATCAGGGGAAACTGGCAAT
CTTGAAGGGTGATTTTCCCCCCGCCCCCAGGATCTGCTGCCTGTGGCTGGAGCAGGGCACACCC
TTCTGGGTCCCACCTTCCCTCAGAGGCTCTCGTTAAGTATGTGACTTGGTCATCTTCGTGTATA
AGACTATGCTGGGGATTTGGGGTGGCCTCCTGCCTTTCTACAGCCTTCAGGGTGGCCACAGATG
GATATGCCTTCTCAGTACCTGTGGTCTTCTCTGCTCAAGGCAGCAGTGGGCACTTGCAGTATAG
TTGAGGAAAATGACCTCTCCTTGACCAAGCTGAGCTGCAGTCCGAATGCCAGGGCTGCATGCTT
CTTTCCTGCTTACAGTTTAGTGAATAATCAGGGATCCAGTATTTCACTGACCCACTCCAGGTTG
CCAGAGTTCCGTTTGAAGGTGTCTCCATGGTTGCACACACCAGAGGACGGGGACTCTGTGTCTA
GAAGGCTGAGGCGAGGGCTCCGTTGTGGGGCAGACTGTTCGCAGTCTTATCTGTCTGAGTATTC
CTGGGTATGACTGTGTGTGGCAAAAGCTCGTGTCACCCAAGTAGTCTTCAACTTCTGTAGTTTG
TAAATGAGTGTTGTGGAGGGAACCTTTAGATGATCAATCAGATGTGTCTTATCTTTTTAGCACT
TGAAAACCAACACACCCAGGAAATGCCACACATTGTTAGAAGCCTAATTGCAGTCGCTAACCAT
TTGTCAGTACCTCCTAACTGCCGCTCTGCCGCTAGTGTTTAAACGTCCACGTGGAAAGCGTTAC
ATTTGGAAGCAGCTGGTGTAAACACTTACTCTAGGCAGCTGCAGTCCTCTTAAGTCTCCAGCCA
GAAGGTGGGGGCCTTTCAGGTGGCAAGATTAAATTGTGCTGTTGCCAAATAGTATTTGAATTAA
TACCAGGAAACAGGGACCATGGTACTGCTGGATGTTTTCGGGTGAGAAAGATGAATGTAGTGTG
CTTTGGCATGGTTTGGGAGACAGTGTCAGCAGTGACAAATCACACAGCTTCAACAAGTCCTCTA
GTTTGTGACAGCATGACAGGTTTACTCTGTCTCTGCGAATGGGTCCCAGAGCCCGTTTGGGAGA
GAGACTCTCCAAAGGTTGAAATGCCAAATAGCATAAAACCTGTTCCCTTGACTCAATAGTAAAG
CCAGGGTGAAGAGCTGCACACACCTTTCTCCCTGAAGAACCGCCCAGGTATGTGGTGATTCTGG
GCTCCCACAGTCCAGCTCAGAGCAGCTAAGACCTGTGCACGCTGTTGCTGGGCAGACTGGTCCC
CAGCCTCAGACCCAACCTCTGCCAAGATGCTGAGGGGAGGAGGAGGGTGTTTTCCTAGACTGTG
GGTTGGTGTAACAAAGCAACGACTGTGTCAGCTGGGCCTTCGTAGGGGAACAAACCAGTACAAA
CCAGCATCTTCTATCAGTTAGCACTGTCCTCCTGGACCATGCTGAGGGCTGGGCCTTTCCCTCA
GAGTCCCTTCTCACTGTATTTCTGTGTGCCTGTTCCCTTCATGCGTGAGTCAGGAATACATGGA
GAGACAGCCTACATCTGACAGACTCCCACAAAACAAACTGCCAGCAAACTTTCTAACTCATATT
TTAACTGTTAAGGGGGGATTAAAACAAAATTTTGGACTGTGGTGTTTTTTTTTTTAAATTTTTA
AAAATTGTTCTTTAGTTTTAAAACTTCCAGAGATAGAAGCAGGCTTCTGAGGTATGGTCTCGCT
GTGTGCTTTCTCTCCATGCTGCCATTAAGCCAAAACAAAAGCTGTGAACATAAGTGCTTGAGAG
AATGCGTGTTGATAAGAAAGTGATTTATTTACAGATCCAAGTCTTTGTCTCACGAAACTACCAA
AAAGAATGTCACCATTTTTCTTCGTTGTGGAACCAGAGATTATAAAAAGAAAAAAAAAAGTTGT
TTTGTTGTATTTTTGATGCTGGCACAAGGTTCTTGTCCACTTTGGTTTTTCGTATATCTGTATG
TAAGAAATTCTGTTTCTTGTTTACTATGGAATTAGTATTACATTTTGAGGTAAACAAAGAATTT
GTATTGCTTGGTAAACTATTAACTATTAGCTTGCAAATTTAAGAATTTTTTCTTTACCTCAGTT
AACTTAAGTAATGGACCAATAAACCTATGACAGATGCTTTATTTA

hide sequence

RefSeq Acc Id:

XM_039109447 ⟹ XP_038965375

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	74,683,902 - 74,805,113 (+)	NCBI

RefSeq Acc Id:

XM_039109448 ⟹ XP_038965376

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	74,683,906 - 74,813,013 (+)	NCBI

RefSeq Acc Id:

XM_039109449 ⟹ XP_038965377

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	74,683,904 - 74,786,506 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001100121	(Get FASTA)	NCBI Sequence Viewer
	XP_038965375	(Get FASTA)	NCBI Sequence Viewer
	XP_038965376	(Get FASTA)	NCBI Sequence Viewer
	XP_038965377	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL91629	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001100121 ⟸ NM_001106651

- UniProtKB:

D4A060 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAGGPPKALPSTGPQSLRDMPHPLAGSSSEEAVGGDSTPSPDLLMARSFGDKDLILPNGGTPAG
TSSPASSSSLLNRLQLDDDIDGETRDLFVTVDDPKKHVCTMETYITYRITTKSTRVEFDLPEYS
VRRRYQDFDWLRNKLEESQPTHLIPPLPEKFVVKGVVDRFSEEFVETRRKALDKFLKRITDHPV
LSFNEHFNVFLTAKDLNAYKKQGIALLTRVGESVKHVTGGYKLRSRPLEFAAIGDYLDTFALKL
GTIDRIAQRIIKEEIEYLVELREYGPVYSTWSALEGELAEPLEGVSACIGNCSTALEELTDDIT
EEFLPVLREYILYSDSMKGVLKKRDQVHAEYEAKLEAVALRKEDRPKVPADVEKCQDRMECFNA
DLKADMERWQGNKRNDFRQLLVGLADKNIQYYEKCLMAWESIIPLLQEKQEAK

hide sequence

RefSeq Acc Id:

XP_017448728 ⟸ XM_017593239

- Peptide Label:

isoform X1

- Sequence:

show sequence

MAGGPPKALPSTGPQSLRDMPHPLAGSSSEEAVGGDSTPSPDLLMARSFGDKDLILPNGGTPAG
TSSPASSSSLLNRLQLDDDIDGETRDLFVTVDDPKKHVCTMETYITYRITTKSTRVEFDLPEYS
VRRRYQDFDWLRNKLEESQPTHLIPPLPEKFVVKGVVDRFSEEFVETRRKALDKFLKRITDHPV
LSFNEHFNVFLTAKDLNAYKKQGIALLTRVGESVKHVTGGYKLRSRPLEFAAIGDYLDTFALKL
GTIDRIAQRIIKEEIEYLVELREYGPVYSTWSALEGELAEPLEGVSACIGNCSTALEELTDDIT
EEFLPVLREYILYSDSMKGVLKKRDQVHAEYEAKLEAVALRKEDRPKVPADVEKCQDRMECFNA
DLKADMERWQGNKRNDFRQLLVGLADKNIQYYEKPWSTKL

hide sequence

RefSeq Acc Id:

ENSRNOP00000056176 ⟸ ENSRNOT00000059419

RefSeq Acc Id:

ENSRNOP00000069076 ⟸ ENSRNOT00000087254

RefSeq Acc Id:	XP_038965375 ⟸ XM_039109447
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038965377 ⟸ XM_039109449
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038965376 ⟸ XM_039109448
- Peptide Label:	isoform X2

Protein Domains

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13693773

Promoter ID:

EPDNEW_R4298

Type:

initiation region

Name:

Snx30_1

Description:

sorting nexin family member 30

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	5	77,052,479 - 77,052,539	EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (MCW)

Visual

CSV

TAB

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

Visual

CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (MCW)

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CSV

TAB

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

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CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN/SsN (MCW)

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CSV

TAB

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Buf/N (MCW)

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CSV

TAB

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

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CSV

TAB

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

F344/NCrl (RGD)

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CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

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CSV

TAB

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

FHH/EurMcwi (MCW)

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CSV

TAB

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

Visual

CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

Visual

CSV

TAB

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

Visual

CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

GH/OmrMcwi (MCW)

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CSV

TAB

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/Ox (RGD)

Visual

CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LE/Stm (RGD)

Visual

CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (RGD)

Visual

CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

Visual

CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrc (RGD)

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CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

M520/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MHS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

SBH/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHRSP/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Damaging Variants

Assembly: Rnor_6.0

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain
5	77137592	77137593	A	T	snv	ACI/N (MCW), WAG/Rij (RGD), F344/NRrrc (MCW), M520/N (MCW), MR/N (MCW), WN/N (MCW), FHL/EurMcwi (RGD), ACI/EurMcwi (RGD), BBDP/Wor (RGD), F344/NCrl (RGD), FHH/EurMcwi (RGD), LE/Stm (RGD), LEW/Crl (RGD), LH/MavRrrc (RGD), LN/MavRrrc (RGD), LL/MavRrrc (RGD), MHS/Gib (RGD), MNS/Gib (RGD), SBH/Ygl (RGD), SBN/Ygl (RGD), SR/JrHsd (RGD), SS/Jr (RGD), SS/JrHsdMcwi (RGD), Buf/N (MCW)

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1311367	AgrOrtholog
Ensembl Genes	ENSRNOG00000017132	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000056176	ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOP00000069076	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000059419	ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOT00000087254	UniProtKB/TrEMBL
Gene3D-CATH	1.20.1270.60	UniProtKB/TrEMBL
	3.30.1520.10	UniProtKB/TrEMBL
InterPro	AH/BAR-dom	UniProtKB/TrEMBL
	Phox	UniProtKB/TrEMBL
	PX_dom_sf	UniProtKB/TrEMBL
	SNX30	UniProtKB/TrEMBL
KEGG Report	rno:298033	UniProtKB/TrEMBL
NCBI Gene	298033	ENTREZGENE
PANTHER	PTHR45949:SF1	UniProtKB/TrEMBL
Pfam	PF00787	UniProtKB/TrEMBL
PhenoGen	Snx30	PhenoGen
PROSITE	PS50195	UniProtKB/TrEMBL
SMART	SM00312	UniProtKB/TrEMBL
Superfamily-SCOP	64268	UniProtKB/TrEMBL
	SSF103657	UniProtKB/TrEMBL
UniProt	A0A0G2JUF2_RAT	UniProtKB/TrEMBL
	D4A060	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Snx30	sorting nexin family member 30	Snx30_predicted	sorting nexin family member 30 (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-30	Snx30_predicted	sorting nexin family member 30 (predicted)	RGD1311367_predicted	similar to Sorting nexin 7 (predicted)	Symbol and Name updated	1299863	APPROVED
2005-01-20	RGD1311367_predicted	similar to Sorting nexin 7 (predicted)	LOC298033_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC298033_predicted	similar to Sorting nexin 7 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)