Snx30 (sorting nexin family member 30) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Snx30 (sorting nexin family member 30) Rattus norvegicus
Analyze
Symbol: Snx30
Name: sorting nexin family member 30
RGD ID: 1311367
Description: Predicted to enable phosphatidylinositol binding activity. Predicted to be involved in several processes, including endocytic recycling; macroautophagy; and positive regulation of autophagosome assembly. Predicted to be located in early endosome membrane. Predicted to be active in early endosome and phagophore assembly site. Orthologous to human SNX30 (sorting nexin family member 30); INTERACTS WITH 17alpha-ethynylestradiol; acetamide; amphetamine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC298033; RGD1311367; similar to Sorting nexin 7; sorting nexin-30
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8579,478,804 - 79,608,118 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl579,478,912 - 79,607,052 (+)EnsemblGRCr8
mRatBN7.2574,683,902 - 74,813,013 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl574,684,015 - 74,792,631 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx576,588,866 - 76,692,768 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0578,410,501 - 78,514,403 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0578,382,679 - 78,486,566 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0577,052,445 - 77,161,964 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl577,052,484 - 77,157,915 (+)Ensemblrn6Rnor6.0
Rnor_5.0581,185,823 - 81,292,332 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4577,924,034 - 78,037,119 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera573,498,886 - 73,602,194 (+)NCBICelera
RGSC_v3.1577,929,367 - 78,042,520 (+)NCBI
Cytogenetic Map5q24NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Snx30
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8579,478,804 - 79,608,118 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl579,478,912 - 79,607,052 (+)EnsemblGRCr8
mRatBN7.2574,683,902 - 74,813,013 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl574,684,015 - 74,792,631 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx576,588,866 - 76,692,768 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0578,410,501 - 78,514,403 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0578,382,679 - 78,486,566 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0577,052,445 - 77,161,964 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl577,052,484 - 77,157,915 (+)Ensemblrn6Rnor6.0
Rnor_5.0581,185,823 - 81,292,332 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4577,924,034 - 78,037,119 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera573,498,886 - 73,602,194 (+)NCBICelera
RGSC_v3.1577,929,367 - 78,042,520 (+)NCBI
Cytogenetic Map5q24NCBI
SNX30
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389112,749,723 - 112,885,769 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9112,750,760 - 112,881,671 (+)Ensemblhg38GRCh38
GRCh379115,513,040 - 115,637,267 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369114,552,955 - 114,677,088 (+)NCBIBuild 36Build 36hg18NCBI36
Celera986,330,021 - 86,454,125 (-)NCBICelera
Cytogenetic Map9q32NCBI
HuRef985,110,784 - 85,235,103 (+)NCBIHuRef
CHM1_19115,660,589 - 115,784,556 (+)NCBICHM1_1
T2T-CHM13v2.09124,920,960 - 125,057,645 (+)NCBIT2T-CHM13v2.0
Snx30
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39459,805,137 - 59,904,740 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl459,805,840 - 59,904,737 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38459,805,131 - 59,904,740 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl459,805,840 - 59,904,737 (+)Ensemblmm10GRCm38
MGSCv37459,818,522 - 59,917,612 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36459,899,704 - 59,998,794 (+)NCBIMGSCv36mm8
Celera459,722,562 - 59,821,429 (+)NCBICelera
Cytogenetic Map4B3NCBI
cM Map432.81NCBI
Snx30
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541914,567,317 - 14,619,637 (-)Ensembl
ChiLan1.0NW_00495541914,567,317 - 14,645,442 (-)NCBIChiLan1.0ChiLan1.0
SNX30
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21126,565,460 - 26,684,584 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1926,567,819 - 26,686,947 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0983,878,128 - 83,997,124 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19112,031,879 - 112,150,074 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9112,031,860 - 112,143,933 (+)EnsemblpanPan2panpan1.1
SNX30
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11167,233,469 - 67,294,159 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1167,233,256 - 67,289,224 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1165,593,004 - 65,700,845 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01168,312,076 - 68,420,280 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1168,310,972 - 68,451,983 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11166,828,471 - 66,936,337 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01166,851,734 - 66,959,739 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01167,596,127 - 67,704,210 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Snx30
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947182,473,720 - 182,582,022 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936559690,397 - 792,835 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936559684,536 - 792,829 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SNX30
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1253,428,508 - 253,550,375 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11253,428,461 - 253,555,463 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21284,234,538 - 284,364,775 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SNX30
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11226,650,088 - 26,774,395 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1226,656,221 - 26,774,009 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366603516,017,007 - 16,141,389 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Snx30
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476022,144,510 - 22,261,296 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462476022,138,646 - 22,261,392 (-)NCBIHetGla 1.0HetGla 1.0hetGla2

Variants

.
Variants in Snx30
561 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:486
Count of miRNA genes:241
Interacting mature miRNAs:290
Transcripts:ENSRNOT00000059419
Prediction methods:Microtar, Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298067Scl15Serum cholesterol level QTL 154.80.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)53801167083011670Rat
1300115Hrtrt7Heart rate QTL 72.76heart pumping trait (VT:2000009)heart rate (CMO:0000002)55266537294894052Rat
1357396Bw44Body weight QTL 444.19body mass (VT:0001259)body weight (CMO:0000012)573779642118779642Rat
1549845Scl44Serum cholesterol level QTL 446blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)544924861153890773Rat
6907115Mcs29Mammary carcinoma susceptibility QTL 29mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)53800433183004331Rat
61380Edpm5Estrogen-dependent pituitary mass QTL 54.50.92pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)573779642103472210Rat
70212Niddm25Non-insulin dependent diabetes mellitus QTL 253.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)538207390136631402Rat
61386Bp49Blood pressure QTL 4916.6cerebrum integrity trait (VT:0010549)brain infarction volume (CMO:0001013)565089051103648916Rat
1331801Rf33Renal function QTL 334.149kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)548523123134369373Rat
2302381Bw84Body weight QTL 844.47body mass (VT:0001259)body mass index (BMI) (CMO:0000105)573779642118779642Rat
1357402Bw46Body weight QTL 464.47body mass (VT:0001259)body mass index (BMI) (CMO:0000105)573779642118779642Rat
1598807Glom12Glomerulus QTL 122.7kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)53801167083011670Rat
1302786Kidm8Kidney mass QTL 828.15kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)53801167083011670Rat
61393Bp7Blood pressure QTL 74.50.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)565089051166764498Rat
1331782Rf36Renal function QTL 363.296kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)539019942102105896Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)551657967166600247Rat
1576312Emca8Estrogen-induced mammary cancer QTL 84.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)555124766172190305Rat
1641912Alcrsp18Alcohol response QTL 18response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)53998594884985948Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)5692228281330203Rat
7394708Emca11Estrogen-induced mammary cancer QTL 11mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)573176602118176602Rat
1576317Eutr2Estrogen induced uterine response QTL 20.01uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)53952692484526924Rat
1331773Scl26Serum cholesterol level QTL 263.065blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)54852312391770353Rat
1578673Bmd13Bone mineral density QTL 134.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)569474415114474415Rat
70189Mcs5Mammary carcinoma susceptibility QTL 510.51mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)560601597137492949Rat
1331771Rf35Renal function QTL 354.36965kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)51001906491770353Rat
61359EaexExperimental allergic encephalomyelitis QTL x3nervous system integrity trait (VT:0010566)post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)560511627105511627Rat
1354598Srn6Serum renin concentration QTL 63.8blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)574335621156302135Rat
2290448Scl54Serum cholesterol level QTL 542.93blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)536460764136631402Rat
61426Scl2Serum cholesterol level QTL 27.30.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)564589016109589016Rat
2290005Mcs24Mammary carcinoma susceptibility QTL 24mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)569835120114835120Rat
1331756Rf34Renal function QTL 344.16275kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)51001906487027358Rat
2306971Anxrr21Anxiety related response QTL 219.47fear/anxiety-related behavior trait (VT:1000241)number of entries into a discrete space in an experimental apparatus (CMO:0000960)570969494136328156Rat
2316954Rf57Renal function QTL 570kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)56458901693503770Rat
2312671Scl64Serum cholesterol level QTL 640.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)573779642118779642Rat
2316959Gluco59Glucose level QTL 594.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)556546393101546393Rat
2316957Pur21Proteinuria QTL 216.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)56458901691762830Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 162 91 90 59 92 59 6 356 192 11 141 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000059419   ⟹   ENSRNOP00000056176
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl579,478,912 - 79,607,052 (+)Ensembl
mRatBN7.2 Ensembl574,684,020 - 74,792,631 (+)Ensembl
Rnor_6.0 Ensembl577,052,484 - 77,157,915 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000087254   ⟹   ENSRNOP00000069076
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl579,478,912 - 79,586,014 (+)Ensembl
mRatBN7.2 Ensembl574,684,015 - 74,791,090 (+)Ensembl
Rnor_6.0 Ensembl577,052,508 - 77,156,572 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000108184   ⟹   ENSRNOP00000079165
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl579,478,912 - 79,604,072 (+)Ensembl
mRatBN7.2 Ensembl574,684,432 - 74,792,631 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000156988   ⟹   ENSRNOP00000109497
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl579,479,367 - 79,591,599 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000157957   ⟹   ENSRNOP00000102520
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl579,478,912 - 79,599,364 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000161925   ⟹   ENSRNOP00000107590
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl579,478,951 - 79,586,728 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000169205   ⟹   ENSRNOP00000102887
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl579,478,912 - 79,584,943 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000173326   ⟹   ENSRNOP00000101106
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl579,478,914 - 79,591,599 (+)Ensembl
RefSeq Acc Id: NM_001106651   ⟹   NP_001100121
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8579,478,942 - 79,587,555 (+)NCBI
mRatBN7.2574,684,020 - 74,792,631 (+)NCBI
Rnor_6.0577,052,484 - 77,157,915 (+)NCBI
Rnor_5.0581,185,823 - 81,292,332 (+)NCBI
RGSC_v3.4577,924,034 - 78,037,119 (+)RGD
Celera573,498,886 - 73,602,194 (+)RGD
Sequence:
RefSeq Acc Id: XM_039109447   ⟹   XP_038965375
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8579,478,821 - 79,600,031 (+)NCBI
mRatBN7.2574,683,902 - 74,805,113 (+)NCBI
RefSeq Acc Id: XM_063287322   ⟹   XP_063143392
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8579,478,804 - 79,600,045 (+)NCBI
RefSeq Acc Id: XM_063287323   ⟹   XP_063143393
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8579,478,820 - 79,591,600 (+)NCBI
RefSeq Acc Id: XM_063287324   ⟹   XP_063143394
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8579,478,808 - 79,608,118 (+)NCBI
RefSeq Acc Id: NP_001100121   ⟸   NM_001106651
- UniProtKB: D4A060 (UniProtKB/TrEMBL),   A6KDX6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000056176   ⟸   ENSRNOT00000059419
Ensembl Acc Id: ENSRNOP00000069076   ⟸   ENSRNOT00000087254
RefSeq Acc Id: XP_038965375   ⟸   XM_039109447
- Peptide Label: isoform X4
- UniProtKB: D4A060 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000079165   ⟸   ENSRNOT00000108184
RefSeq Acc Id: XP_063143392   ⟸   XM_063287322
- Peptide Label: isoform X1
- UniProtKB: D4A060 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063143394   ⟸   XM_063287324
- Peptide Label: isoform X3
- UniProtKB: D4A060 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063143393   ⟸   XM_063287323
- Peptide Label: isoform X2
- UniProtKB: D4A060 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000102887   ⟸   ENSRNOT00000169205
Ensembl Acc Id: ENSRNOP00000109497   ⟸   ENSRNOT00000156988
Ensembl Acc Id: ENSRNOP00000107590   ⟸   ENSRNOT00000161925
Ensembl Acc Id: ENSRNOP00000101106   ⟸   ENSRNOT00000173326
Ensembl Acc Id: ENSRNOP00000102520   ⟸   ENSRNOT00000157957
Protein Domains
PX

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2JUF2-F1-model_v2 AlphaFold A0A0G2JUF2 1-470 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693773
Promoter ID:EPDNEW_R4298
Type:initiation region
Name:Snx30_1
Description:sorting nexin family member 30
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0577,052,479 - 77,052,539EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311367 AgrOrtholog
BioCyc Gene G2FUF-41134 BioCyc
Ensembl Genes ENSRNOG00000017132 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000059419 ENTREZGENE
  ENSRNOT00000059419.5 UniProtKB/TrEMBL
  ENSRNOT00000087254.2 UniProtKB/TrEMBL
  ENSRNOT00000108184.1 UniProtKB/TrEMBL
  ENSRNOT00000156988 ENTREZGENE
  ENSRNOT00000157957 ENTREZGENE
  ENSRNOT00000161925 ENTREZGENE
Gene3D-CATH 1.20.1270.60 UniProtKB/TrEMBL
  3.30.1520.10 UniProtKB/TrEMBL
InterPro AH/BAR-dom UniProtKB/TrEMBL
  Phox UniProtKB/TrEMBL
  PX_dom_sf UniProtKB/TrEMBL
  SNX30 UniProtKB/TrEMBL
KEGG Report rno:298033 UniProtKB/TrEMBL
NCBI Gene 298033 ENTREZGENE
PANTHER PTHR45949:SF1 UniProtKB/TrEMBL
  SORTING NEXIN-4 UniProtKB/TrEMBL
Pfam PF00787 UniProtKB/TrEMBL
PhenoGen Snx30 PhenoGen
PROSITE PS50195 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000017132 RatGTEx
SMART SM00312 UniProtKB/TrEMBL
Superfamily-SCOP 64268 UniProtKB/TrEMBL
  SSF103657 UniProtKB/TrEMBL
UniProt A0A0G2JUF2_RAT UniProtKB/TrEMBL
  A0A8I5ZMF9_RAT UniProtKB/TrEMBL
  A6KDX6 ENTREZGENE, UniProtKB/TrEMBL
  D4A060 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Snx30  sorting nexin family member 30   Snx30_predicted  sorting nexin family member 30 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-30 Snx30_predicted  sorting nexin family member 30 (predicted)  RGD1311367_predicted  similar to Sorting nexin 7 (predicted)  Symbol and Name updated 1299863 APPROVED
2005-01-20 RGD1311367_predicted  similar to Sorting nexin 7 (predicted)  LOC298033_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC298033_predicted  similar to Sorting nexin 7 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL