Trmt10b (tRNA methyltransferase 10B) - Rat Genome Database

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Gene: Trmt10b (tRNA methyltransferase 10B) Rattus norvegicus
Analyze
Symbol: Trmt10b
Name: tRNA methyltransferase 10B
RGD ID: 1310735
Description: Predicted to enable tRNA (guanosine(9)-N1)-methyltransferase activity and tRNA binding activity. Predicted to be involved in protein insertion into mitochondrial inner membrane and tRNA N1-guanine methylation. Predicted to be located in cytosol and mitochondrial inner membrane. Predicted to be part of TIM22 mitochondrial import inner membrane insertion complex. Predicted to be active in nucleoplasm. Orthologous to human TRMT10B (tRNA methyltransferase 10B); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC298081; Rg9mtd3; RNA (guanine-9-) methyltransferase domain containing 3; RNA (guanine-9-)-methyltransferase domain-containing protein 3; tRNA (guanine(9)-N(1))-methyltransferase TRMT10B; tRNA methyltransferase 10 homolog B; tRNA methyltransferase 10 homolog B (S. cerevisiae)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8564,344,491 - 64,368,175 (+)NCBIGRCr8
mRatBN7.2559,548,845 - 59,572,529 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl559,548,869 - 59,572,526 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx561,532,520 - 61,546,877 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0563,352,023 - 63,366,380 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0563,321,232 - 63,335,589 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0560,841,517 - 60,866,480 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl560,850,852 - 60,865,207 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0565,350,074 - 65,373,928 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4561,853,683 - 61,877,298 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1561,863,142 - 61,877,474 (+)NCBI
Celera558,126,541 - 58,140,875 (+)NCBICelera
Cytogenetic Map5q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:23042678   PMID:32901109  


Genomics

Comparative Map Data
Trmt10b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8564,344,491 - 64,368,175 (+)NCBIGRCr8
mRatBN7.2559,548,845 - 59,572,529 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl559,548,869 - 59,572,526 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx561,532,520 - 61,546,877 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0563,352,023 - 63,366,380 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0563,321,232 - 63,335,589 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0560,841,517 - 60,866,480 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl560,850,852 - 60,865,207 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0565,350,074 - 65,373,928 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4561,853,683 - 61,877,298 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1561,863,142 - 61,877,474 (+)NCBI
Celera558,126,541 - 58,140,875 (+)NCBICelera
Cytogenetic Map5q22NCBI
TRMT10B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38937,752,901 - 37,778,972 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl937,753,803 - 37,778,972 (+)EnsemblGRCh38hg38GRCh38
GRCh37937,753,802 - 37,778,969 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36937,743,802 - 37,768,969 (+)NCBINCBI36Build 36hg18NCBI36
Build 34937,743,801 - 37,768,504NCBI
Celera937,686,996 - 37,712,164 (+)NCBICelera
Cytogenetic Map9p13.2NCBI
HuRef937,706,146 - 37,731,310 (+)NCBIHuRef
CHM1_1937,755,489 - 37,780,658 (+)NCBICHM1_1
T2T-CHM13v2.0937,776,617 - 37,802,703 (+)NCBIT2T-CHM13v2.0
Trmt10b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39445,297,158 - 45,316,181 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl445,297,127 - 45,316,131 (+)EnsemblGRCm39 Ensembl
GRCm38445,297,068 - 45,316,134 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl445,297,127 - 45,316,131 (+)EnsemblGRCm38mm10GRCm38
MGSCv37445,310,040 - 45,329,003 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36445,318,268 - 45,337,231 (+)NCBIMGSCv36mm8
Celera445,318,614 - 45,337,523 (+)NCBICelera
Cytogenetic Map4B1NCBI
cM Map423.83NCBI
Trmt10b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541928,693,821 - 28,713,349 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541928,693,509 - 28,720,006 (-)NCBIChiLan1.0ChiLan1.0
TRMT10B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21186,807,596 - 86,826,589 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1986,813,573 - 86,832,531 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0937,602,757 - 37,628,693 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1938,526,496 - 38,551,902 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl938,526,496 - 38,551,902 (+)Ensemblpanpan1.1panPan2
TRMT10B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11154,056,251 - 54,071,870 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1154,056,312 - 54,071,692 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1152,482,127 - 52,497,804 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01155,165,365 - 55,181,045 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1155,165,484 - 55,182,180 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11153,663,521 - 53,679,196 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01153,693,157 - 53,708,827 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01154,389,418 - 54,405,100 (+)NCBIUU_Cfam_GSD_1.0
Trmt10b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947169,013,971 - 169,031,687 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365245,561,647 - 5,579,230 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365245,561,622 - 5,579,263 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRMT10B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1238,516,058 - 238,537,149 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11238,516,042 - 238,536,372 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21266,451,014 - 266,470,245 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TRMT10B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11242,794,648 - 42,829,913 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1242,797,739 - 42,821,327 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603839,860,949 - 39,897,400 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Trmt10b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249301,367,386 - 1,393,003 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249301,367,364 - 1,393,005 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Trmt10b
78 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:257
Count of miRNA genes:181
Interacting mature miRNAs:206
Transcripts:ENSRNOT00000016720
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298067Scl15Serum cholesterol level QTL 154.80.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)53321566578215665Rat
1300115Hrtrt7Heart rate QTL 72.76heart pumping trait (VT:2000009)heart rate (CMO:0000002)54786906290099692Rat
1578776Stresp18Stress response QTL 182.9thymus mass (VT:0004954)thymus wet weight (CMO:0000855)52795544072955440Rat
1549845Scl44Serum cholesterol level QTL 446blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)540128307148607290Rat
70212Niddm25Non-insulin dependent diabetes mellitus QTL 253.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)51131345958Rat
1358353Srcrtb2Stress Responsive Cort Basal QTL 23.480.003blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)51887394774251464Rat
634305Mamtr1Mammary tumor resistance QTL 10.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)512789751113558310Rat
1598868Mcs12Mammary carcinoma susceptibility QTL 120.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)55897344960051321Rat
1331801Rf33Renal function QTL 334.149kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)543726656129132602Rat
1598807Glom12Glomerulus QTL 122.7kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)53321566578215665Rat
1302786Kidm8Kidney mass QTL 828.15kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)53321566578215665Rat
6903292Stl28Serum triglyceride level QTL 282.60.0073blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)52851548973515489Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)546711509161317411Rat
1578767Stresp17Stress response QTL 174.30.01blood aldosterone amount (VT:0005346)plasma aldosterone level (CMO:0000551)52795544072955440Rat
7411561Bw134Body weight QTL 134240.001body mass (VT:0001259)body weight gain (CMO:0000420)54946360094463600Rat
1641922Alcrsp8Alcohol response QTL 8alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)53518915368564008Rat
2303615Vencon7Ventilatory control QTL 70.001respiration trait (VT:0001943)respiration rate (CMO:0000289)55098389595983895Rat
1576312Emca8Estrogen-induced mammary cancer QTL 84.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)550328551141643988Rat
1641912Alcrsp18Alcohol response QTL 18response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)535189153141643988Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
6903306Scl35Serum cholesterol QTL 352.60.0073blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)52851548973515489Rat
1576317Eutr2Estrogen induced uterine response QTL 20.01uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)534730116104251008Rat
7394712Emca13Estrogen-induced mammary cancer QTL 13mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)5982326699753708Rat
1331773Scl26Serum cholesterol level QTL 263.065blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)54372665686724018Rat
70189Mcs5Mammary carcinoma susceptibility QTL 510.51mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)555805606132207589Rat
1331771Rf35Renal function QTL 354.36965kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)572947086724018Rat
61359EaexExperimental allergic encephalomyelitis QTL x3nervous system integrity trait (VT:0010566)post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)555715622100715622Rat
2290448Scl54Serum cholesterol level QTL 542.93blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)531663789131345958Rat
8662454Vetf3Vascular elastic tissue fragility QTL 327.4artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)5228222669540447Rat
9589025Epfw7Epididymal fat weight QTL 720.660.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)54946360094463600Rat
2303574Gluco42Glucose level QTL 422blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)55349671998496719Rat
1331756Rf34Renal function QTL 344.16275kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)5190450412Rat
8552954Pigfal14Plasma insulin-like growth factor 1 level QTL 149blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)52122674466226744Rat
1358895Bp254Blood pressure QTL 2543.60.0003arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)558829236128034027Rat
2316959Gluco59Glucose level QTL 594.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)534944474113558310Rat
1600358Mamtr5Mammary tumor resistance QTL 5mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)51887394763873947Rat

Markers in Region
RH142075  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2559,572,281 - 59,572,487 (+)MAPPERmRatBN7.2
Rnor_6.0560,864,931 - 60,865,136NCBIRnor6.0
Rnor_5.0565,373,681 - 65,373,886UniSTSRnor5.0
RGSC_v3.4561,877,051 - 61,877,256UniSTSRGSC3.4
Celera558,140,628 - 58,140,833UniSTS
RH 3.4 Map5389.6UniSTS
Cytogenetic Map5q22UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000016720   ⟹   ENSRNOP00000016719
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl559,548,869 - 59,572,526 (+)Ensembl
Rnor_6.0 Ensembl560,850,852 - 60,865,207 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000097846   ⟹   ENSRNOP00000091708
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl559,556,453 - 59,572,526 (+)Ensembl
RefSeq Acc Id: NM_001013090   ⟹   NP_001013108
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8564,353,841 - 64,368,175 (+)NCBI
mRatBN7.2559,558,195 - 59,572,529 (+)NCBI
Rnor_6.0560,850,844 - 60,865,178 (+)NCBI
Rnor_5.0565,350,074 - 65,373,928 (+)NCBI
RGSC_v3.4561,853,683 - 61,877,298 (+)RGD
Celera558,126,541 - 58,140,875 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006238042   ⟹   XP_006238104
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8564,344,491 - 64,368,175 (+)NCBI
mRatBN7.2559,548,845 - 59,572,529 (+)NCBI
Rnor_6.0560,841,517 - 60,865,178 (+)NCBI
Rnor_5.0565,350,074 - 65,373,928 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006238043   ⟹   XP_006238105
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8564,344,533 - 64,368,175 (+)NCBI
mRatBN7.2559,548,931 - 59,572,529 (+)NCBI
Rnor_6.0560,841,579 - 60,866,480 (+)NCBI
Rnor_5.0565,350,074 - 65,373,928 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006238044   ⟹   XP_006238106
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8564,344,526 - 64,368,175 (+)NCBI
mRatBN7.2559,548,891 - 59,572,529 (+)NCBI
Rnor_6.0560,841,547 - 60,866,480 (+)NCBI
Rnor_5.0565,350,074 - 65,373,928 (+)NCBI
Sequence:
RefSeq Acc Id: NP_001013108   ⟸   NM_001013090
- UniProtKB: Q5RJK3 (UniProtKB/Swiss-Prot),   A6IJ91 (UniProtKB/TrEMBL),   A0A8I6AG84 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006238104   ⟸   XM_006238042
- Peptide Label: isoform X1
- UniProtKB: Q5RJK3 (UniProtKB/Swiss-Prot),   A6IJ91 (UniProtKB/TrEMBL),   A0A8I6AG84 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006238106   ⟸   XM_006238044
- Peptide Label: isoform X1
- UniProtKB: Q5RJK3 (UniProtKB/Swiss-Prot),   A6IJ91 (UniProtKB/TrEMBL),   A0A8I6AG84 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006238105   ⟸   XM_006238043
- Peptide Label: isoform X1
- UniProtKB: Q5RJK3 (UniProtKB/Swiss-Prot),   A6IJ91 (UniProtKB/TrEMBL),   A0A8I6AG84 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000016719   ⟸   ENSRNOT00000016720
Ensembl Acc Id: ENSRNOP00000091708   ⟸   ENSRNOT00000097846
Protein Domains
SAM-dependent MTase TRM10-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5RJK3-F1-model_v2 AlphaFold Q5RJK3 1-316 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693701
Promoter ID:EPDNEW_R4225
Type:single initiation site
Name:Trmt10b_1
Description:tRNA methyltransferase 10B
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0560,850,828 - 60,850,888EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310735 AgrOrtholog
BioCyc Gene G2FUF-41447 BioCyc
Ensembl Genes ENSRNOG00000012454 Ensembl, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000016720.7 UniProtKB/Swiss-Prot
  ENSRNOT00000097846.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.1280.30 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7315452 IMAGE-MGC_LOAD
InterPro MT_TRM10-typ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MT_TRM10-typ_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Trm10_B_MTase_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  tRNA_m1G_MeTrfase_euk UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  tRNA_MeTrfase_TRMD/TRM10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:298081 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:105746 IMAGE-MGC_LOAD
NCBI Gene 298081 ENTREZGENE
PANTHER PTHR13563 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRNA METHYLTRANSFERASE 10 HOMOLOG B UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam tRNA_m1G_MT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Trmt10b PhenoGen
PROSITE SAM_MT_TRM10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000012454 RatGTEx
UniProt A0A8I6AG84 ENTREZGENE, UniProtKB/TrEMBL
  A6IJ91 ENTREZGENE, UniProtKB/TrEMBL
  Q5RJK3 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-10-01 Trmt10b  tRNA methyltransferase 10B  Trmt10b  tRNA methyltransferase 10 homolog B (S. cerevisiae)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-10-10 Trmt10b  tRNA methyltransferase 10 homolog B (S. cerevisiae)  Rg9mtd3  RNA (guanine-9-) methyltransferase domain containing 3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Rg9mtd3  RNA (guanine-9-) methyltransferase domain containing 3  Rg9mtd3_predicted  RNA (guanine-9-) methyltransferase domain containing 3 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Rg9mtd3_predicted  RNA (guanine-9-) methyltransferase domain containing 3 (predicted)      Symbol and Name status set to approved 70820 APPROVED