Lingo2 (leucine rich repeat and Ig domain containing 2) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Lingo2 (leucine rich repeat and Ig domain containing 2) Rattus norvegicus
Analyze
Symbol: Lingo2
Name: leucine rich repeat and Ig domain containing 2
RGD ID: 1310773
Description: Predicted to act upstream of or within positive regulation of synapse assembly. Is active in glutamatergic synapse and synaptic membrane. Orthologous to human LINGO2 (leucine rich repeat and Ig domain containing 2); INTERACTS WITH bisphenol A; cadmium dichloride; Cuprizon.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: hypothetical protein LOC313156; leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 2; LOC313156; RGD1310773; similar to hypothetical protein FLJ31810; uncharacterized protein LOC313156
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8555,166,250 - 56,488,672 (-)NCBIGRCr8
mRatBN7.2550,370,744 - 51,687,252 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl550,367,101 - 50,516,956 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx552,565,927 - 52,708,396 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0554,163,406 - 54,305,883 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0554,065,306 - 54,207,789 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0551,466,367 - 51,638,161 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0556,027,971 - 56,198,552 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4552,476,741 - 52,590,042 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera549,086,900 - 49,231,177 (-)NCBICelera
Cytogenetic Map5q21-q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
glutamatergic synapse  (EXP,IDA,IEP)
plasma membrane  (IBA)
synaptic membrane  (EXP,IDA,IEP)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Proteomic Analysis of Unbounded Cellular Compartments: Synaptic Clefts. Loh KH, etal., Cell. 2016 Aug 25;166(5):1295-1307.e21. doi: 10.1016/j.cell.2016.07.041.
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. GOA pipeline RGD automated data pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:24613359  


Genomics

Comparative Map Data
Lingo2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8555,166,250 - 56,488,672 (-)NCBIGRCr8
mRatBN7.2550,370,744 - 51,687,252 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl550,367,101 - 50,516,956 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx552,565,927 - 52,708,396 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0554,163,406 - 54,305,883 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0554,065,306 - 54,207,789 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0551,466,367 - 51,638,161 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0556,027,971 - 56,198,552 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4552,476,741 - 52,590,042 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera549,086,900 - 49,231,177 (-)NCBICelera
Cytogenetic Map5q21-q22NCBI
LINGO2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38927,937,617 - 29,213,601 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl927,937,617 - 29,213,601 (-)EnsemblGRCh38hg38GRCh38
GRCh37927,937,615 - 29,213,599 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36927,938,528 - 28,709,303 (-)NCBINCBI36Build 36hg18NCBI36
Celera927,876,621 - 28,649,863 (-)NCBICelera
Cytogenetic Map9p21.2-p21.1NCBI
HuRef927,900,694 - 29,165,921 (-)NCBIHuRef
CHM1_1927,947,856 - 29,212,826 (-)NCBICHM1_1
T2T-CHM13v2.0927,948,210 - 29,231,596 (-)NCBIT2T-CHM13v2.0
Lingo2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39435,696,778 - 36,951,929 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl435,706,647 - 36,951,747 (-)EnsemblGRCm39 Ensembl
GRCm38435,696,778 - 36,951,744 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl435,706,647 - 36,951,747 (-)EnsemblGRCm38mm10GRCm38
MGSCv37435,653,896 - 36,898,777 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36435,896,291 - 36,034,083 (-)NCBIMGSCv36mm8
Celera435,399,009 - 36,648,653 (-)NCBICelera
Cytogenetic Map4A5NCBI
cM Map417.74NCBI
Lingo2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554726,968,576 - 6,970,396 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554725,790,522 - 6,971,152 (+)NCBIChiLan1.0ChiLan1.0
LINGO2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21195,382,085 - 96,628,142 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1995,388,029 - 96,634,088 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0927,760,276 - 29,008,800 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1928,366,227 - 29,779,879 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl928,377,472 - 28,379,292 (-)Ensemblpanpan1.1panPan2
LINGO2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11145,997,900 - 47,115,857 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1145,998,249 - 46,000,069 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1144,665,908 - 45,803,522 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01146,943,920 - 48,068,400 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1146,944,491 - 46,946,845 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11145,599,200 - 46,722,220 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01145,496,756 - 46,618,731 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01146,237,174 - 47,354,240 (-)NCBIUU_Cfam_GSD_1.0
Lingo2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947160,911,991 - 161,400,764 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366111,747,626 - 1,749,446 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366111,267,679 - 1,434,908 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LINGO2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1038,026,962 - 38,028,782 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11036,741,209 - 38,031,139 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Lingo2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473632,186,995 - 32,203,250 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473632,177,085 - 33,454,296 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Lingo2
9445 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:127
Count of miRNA genes:86
Interacting mature miRNAs:111
Transcripts:ENSRNOT00000007449
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2293666Bmd38Bone mineral density QTL 384.4femur size trait (VT:1000369)femoral neck cortical cross-sectional area (CMO:0001702)5894822853948228Rat
1578776Stresp18Stress response QTL 182.9thymus mass (VT:0004954)thymus wet weight (CMO:0000855)52795544072955440Rat
1298067Scl15Serum cholesterol level QTL 154.80.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)53321566578215665Rat
1300115Hrtrt7Heart rate QTL 72.76heart pumping trait (VT:2000009)heart rate (CMO:0000002)54786906290099692Rat
1549845Scl44Serum cholesterol level QTL 446blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)540128307148607290Rat
70212Niddm25Non-insulin dependent diabetes mellitus QTL 253.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)51131345958Rat
1358353Srcrtb2Stress Responsive Cort Basal QTL 23.480.003blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)51887394774251464Rat
634305Mamtr1Mammary tumor resistance QTL 10.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)512789751113558310Rat
1331801Rf33Renal function QTL 334.149kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)543726656129132602Rat
1598807Glom12Glomerulus QTL 122.7kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)53321566578215665Rat
1302786Kidm8Kidney mass QTL 828.15kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)53321566578215665Rat
6903292Stl28Serum triglyceride level QTL 282.60.0073blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)52851548973515489Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)546711509161317411Rat
1578767Stresp17Stress response QTL 174.30.01blood aldosterone amount (VT:0005346)plasma aldosterone level (CMO:0000551)52795544072955440Rat
7411561Bw134Body weight QTL 134240.001body mass (VT:0001259)body weight gain (CMO:0000420)54946360094463600Rat
1641922Alcrsp8Alcohol response QTL 8alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)53518915368564008Rat
2303615Vencon7Ventilatory control QTL 70.001respiration trait (VT:0001943)respiration rate (CMO:0000289)55098389595983895Rat
1576312Emca8Estrogen-induced mammary cancer QTL 84.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)550328551141643988Rat
1641912Alcrsp18Alcohol response QTL 18response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)535189153141643988Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
6903306Scl35Serum cholesterol QTL 352.60.0073blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)52851548973515489Rat
1576317Eutr2Estrogen induced uterine response QTL 20.01uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)534730116104251008Rat
7394712Emca13Estrogen-induced mammary cancer QTL 13mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)5982326699753708Rat
1331773Scl26Serum cholesterol level QTL 263.065blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)54372665686724018Rat
1331771Rf35Renal function QTL 354.36965kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)572947086724018Rat
8662454Vetf3Vascular elastic tissue fragility QTL 327.4artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)5228222669540447Rat
2290448Scl54Serum cholesterol level QTL 542.93blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)531663789131345958Rat
9589025Epfw7Epididymal fat weight QTL 720.660.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)54946360094463600Rat
1641903Alcrsp3Alcohol response QTL 3response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)51268928557689285Rat
1331756Rf34Renal function QTL 344.16275kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)5190450412Rat
8552954Pigfal14Plasma insulin-like growth factor 1 level QTL 149blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)52122674466226744Rat
2316959Gluco59Glucose level QTL 594.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)534944474113558310Rat
1600358Mamtr5Mammary tumor resistance QTL 5mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)51887394763873947Rat

Markers in Region
D5Rat6  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8555,251,577 - 55,251,722 (+)Marker Load Pipeline
mRatBN7.2550,455,368 - 50,455,513 (+)MAPPERmRatBN7.2
Rnor_6.0551,578,827 - 51,578,971NCBIRnor6.0
Rnor_5.0556,139,218 - 56,139,362UniSTSRnor5.0
RGSC_v3.4552,530,469 - 52,530,898RGDRGSC3.4
RGSC_v3.4552,530,708 - 52,530,852UniSTSRGSC3.4
RGSC_v3.1552,530,887 - 52,531,031RGD
Celera549,170,468 - 49,170,612UniSTS
RH 3.4 Map5308.6UniSTS
RH 3.4 Map5308.6RGD
RH 2.0 Map5350.2RGD
SHRSP x BN Map533.9799RGD
FHH x ACI Map530.19RGD
Cytogenetic Map5q22UniSTS
Lingo2  
Rat AssemblyChrPosition (strand)SourceJBrowse
RGSC_v3.4552,478,584 - 52,479,220UniSTSRGSC3.4
Celera549,088,743 - 49,089,378UniSTS
Cytogenetic Map5q22UniSTS
Lingo2  
Rat AssemblyChrPosition (strand)SourceJBrowse
RGSC_v3.4552,478,323 - 52,479,100UniSTSRGSC3.4
Celera549,088,482 - 49,089,258UniSTS
Cytogenetic Map5q22UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001107926 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109831 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109832 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287591 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287592 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287593 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287594 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287595 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287596 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287597 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287598 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287599 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010066382 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010066383 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473962 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000007449   ⟹   ENSRNOP00000065270
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl550,371,483 - 50,514,709 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000104376   ⟹   ENSRNOP00000097289
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl550,367,101 - 50,515,653 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000110514   ⟹   ENSRNOP00000096450
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl550,367,836 - 50,514,915 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000114077   ⟹   ENSRNOP00000093394
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl550,367,404 - 50,396,482 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000119962   ⟹   ENSRNOP00000081619
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl550,367,404 - 50,516,956 (-)Ensembl
RefSeq Acc Id: NM_001107926   ⟹   NP_001101396
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8555,167,693 - 55,310,912 (-)NCBI
mRatBN7.2550,371,483 - 50,514,709 (-)NCBI
Rnor_6.0551,466,367 - 51,638,161 (-)NCBI
Rnor_5.0556,027,971 - 56,198,552 (-)NCBI
RGSC_v3.4552,476,741 - 52,590,042 (-)RGD
Celera549,086,900 - 49,231,177 (-)RGD
Sequence:
RefSeq Acc Id: XM_039109831   ⟹   XP_038965759
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8555,166,250 - 56,488,672 (-)NCBI
mRatBN7.2550,370,744 - 51,685,656 (-)NCBI
RefSeq Acc Id: XM_039109832   ⟹   XP_038965760
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8555,166,250 - 56,488,672 (-)NCBI
mRatBN7.2550,370,744 - 51,685,656 (-)NCBI
RefSeq Acc Id: XM_063287591   ⟹   XP_063143661
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8555,166,250 - 56,488,672 (-)NCBI
RefSeq Acc Id: XM_063287592   ⟹   XP_063143662
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8555,166,250 - 56,488,672 (-)NCBI
RefSeq Acc Id: XM_063287593   ⟹   XP_063143663
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8555,166,250 - 56,488,672 (-)NCBI
RefSeq Acc Id: XM_063287594   ⟹   XP_063143664
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8555,166,250 - 56,488,672 (-)NCBI
RefSeq Acc Id: XM_063287595   ⟹   XP_063143665
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8555,166,250 - 56,481,164 (-)NCBI
RefSeq Acc Id: XM_063287596   ⟹   XP_063143666
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8555,166,250 - 56,488,672 (-)NCBI
RefSeq Acc Id: XM_063287597   ⟹   XP_063143667
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8555,166,250 - 55,998,881 (-)NCBI
RefSeq Acc Id: XM_063287598   ⟹   XP_063143668
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8555,166,250 - 55,998,881 (-)NCBI
RefSeq Acc Id: XM_063287599   ⟹   XP_063143669
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8555,166,250 - 55,317,518 (-)NCBI
RefSeq Acc Id: XR_010066382
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8555,622,048 - 56,488,672 (-)NCBI
RefSeq Acc Id: XR_010066383
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8555,342,230 - 56,488,672 (-)NCBI
RefSeq Acc Id: NP_001101396   ⟸   NM_001107926
- Peptide Label: precursor
- UniProtKB: M0R752 (UniProtKB/TrEMBL),   A6IIP9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_038965760   ⟸   XM_039109832
- Peptide Label: isoform X1
- UniProtKB: M0R752 (UniProtKB/TrEMBL),   A6IIP9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038965759   ⟸   XM_039109831
- Peptide Label: isoform X1
- UniProtKB: M0R752 (UniProtKB/TrEMBL),   A6IIP9 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000097289   ⟸   ENSRNOT00000104376
Ensembl Acc Id: ENSRNOP00000065270   ⟸   ENSRNOT00000007449
Ensembl Acc Id: ENSRNOP00000096450   ⟸   ENSRNOT00000110514
Ensembl Acc Id: ENSRNOP00000081619   ⟸   ENSRNOT00000119962
Ensembl Acc Id: ENSRNOP00000093394   ⟸   ENSRNOT00000114077
RefSeq Acc Id: XP_063143666   ⟸   XM_063287596
- Peptide Label: isoform X1
- UniProtKB: A6IIP9 (UniProtKB/TrEMBL),   M0R752 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063143664   ⟸   XM_063287594
- Peptide Label: isoform X1
- UniProtKB: A6IIP9 (UniProtKB/TrEMBL),   M0R752 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063143661   ⟸   XM_063287591
- Peptide Label: isoform X1
- UniProtKB: A6IIP9 (UniProtKB/TrEMBL),   M0R752 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063143662   ⟸   XM_063287592
- Peptide Label: isoform X1
- UniProtKB: A6IIP9 (UniProtKB/TrEMBL),   M0R752 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063143663   ⟸   XM_063287593
- Peptide Label: isoform X1
- UniProtKB: A6IIP9 (UniProtKB/TrEMBL),   M0R752 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063143665   ⟸   XM_063287595
- Peptide Label: isoform X1
- UniProtKB: A6IIP9 (UniProtKB/TrEMBL),   M0R752 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063143668   ⟸   XM_063287598
- Peptide Label: isoform X1
- UniProtKB: A6IIP9 (UniProtKB/TrEMBL),   M0R752 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063143667   ⟸   XM_063287597
- Peptide Label: isoform X1
- UniProtKB: A6IIP9 (UniProtKB/TrEMBL),   M0R752 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063143669   ⟸   XM_063287599
- Peptide Label: isoform X1
- UniProtKB: A6IIP9 (UniProtKB/TrEMBL),   M0R752 (UniProtKB/TrEMBL)
Protein Domains
Ig-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-M0R752-F1-model_v2 AlphaFold M0R752 1-425 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310773 AgrOrtholog
BioCyc Gene G2FUF-41630 BioCyc
Ensembl Genes ENSRNOG00000005634 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000007449.4 UniProtKB/TrEMBL
  ENSRNOT00000104376.1 UniProtKB/TrEMBL
  ENSRNOT00000110514.1 UniProtKB/TrEMBL
  ENSRNOT00000114077.1 UniProtKB/TrEMBL
  ENSRNOT00000119962.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
  3.80.10.10 UniProtKB/TrEMBL
InterPro Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_I-set UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_sub2 UniProtKB/TrEMBL
  Leu-rich_rpt UniProtKB/TrEMBL
  Leu-rich_rpt_typical-subtyp UniProtKB/TrEMBL
  LRFN UniProtKB/TrEMBL
  LRR_dom_sf UniProtKB/TrEMBL
  LRRNT UniProtKB/TrEMBL
KEGG Report rno:313156 UniProtKB/TrEMBL
NCBI Gene 313156 ENTREZGENE
PANTHER KEKKON 5, ISOFORM A UniProtKB/TrEMBL
  SYNAPTIC ADHESION-LIKE MOLECULE SALM UniProtKB/TrEMBL
Pfam I-set UniProtKB/TrEMBL
  LRR_8 UniProtKB/TrEMBL
PhenoGen Lingo2 PhenoGen
PROSITE IG_LIKE UniProtKB/TrEMBL
  LRR UniProtKB/TrEMBL
RatGTEx ENSRNOG00000005634 RatGTEx
SMART IGc2 UniProtKB/TrEMBL
  LRR_TYP UniProtKB/TrEMBL
  LRRNT UniProtKB/TrEMBL
  SM00409 UniProtKB/TrEMBL
Superfamily-SCOP L domain-like UniProtKB/TrEMBL
  SSF48726 UniProtKB/TrEMBL
UniProt A6IIP9 ENTREZGENE, UniProtKB/TrEMBL
  M0R752 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-10-10 Lingo2  leucine rich repeat and Ig domain containing 2  RGD1310773  similar to hypothetical protein FLJ31810  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1310773  similar to hypothetical protein FLJ31810   RGD1310773_predicted  similar to hypothetical protein FLJ31810 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-20 RGD1310773_predicted  similar to hypothetical protein FLJ31810 (predicted)  LOC313156_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC313156_predicted  similar to hypothetical protein FLJ31810 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL