LOC100910017 (60S ribosomal protein L31-like) - Rat Genome Database

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Gene: LOC100910017 (60S ribosomal protein L31-like) Rattus norvegicus
Analyze
No known orthologs.
Symbol: LOC100910017 (Ensembl: AABR07071195.1)
Name: 60S ribosomal protein L31-like (Ensembl:ribosomal protein L31)
RGD ID: 6500827
Description: Predicted to be a structural constituent of ribosome. Predicted to be involved in cytoplasmic translation. Predicted to be part of cytosolic large ribosomal subunit.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: large ribosomal subunit protein eL31-like
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8581,001,147 - 81,002,378 (-)NCBIGRCr8
mRatBN7.2575,985,785 - 75,986,272 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl575,985,796 - 75,986,238 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl896,875,636 - 96,876,010 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0578,392,676 - 78,393,130 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0582,511,624 - 82,512,046 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera574,927,159 - 74,927,612 (-)NCBICelera
Cytogenetic Map5q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298067Scl15Serum cholesterol level QTL 154.80.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)53801167083011670Rat
1300115Hrtrt7Heart rate QTL 72.76heart pumping trait (VT:2000009)heart rate (CMO:0000002)55266537294894052Rat
1357396Bw44Body weight QTL 444.19body mass (VT:0001259)body weight (CMO:0000012)573779642118779642Rat
6907115Mcs29Mammary carcinoma susceptibility QTL 29mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)53800433183004331Rat
1549845Scl44Serum cholesterol level QTL 446blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)544924861153890773Rat
61380Edpm5Estrogen-dependent pituitary mass QTL 54.50.92pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)573779642103472210Rat
70212Niddm25Non-insulin dependent diabetes mellitus QTL 253.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)538207390136631402Rat
61386Bp49Blood pressure QTL 4916.6cerebrum integrity trait (VT:0010549)brain infarction volume (CMO:0001013)565089051103648916Rat
1331801Rf33Renal function QTL 334.149kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)548523123134369373Rat
2302381Bw84Body weight QTL 844.47body mass (VT:0001259)body mass index (BMI) (CMO:0000105)573779642118779642Rat
1357402Bw46Body weight QTL 464.47body mass (VT:0001259)body mass index (BMI) (CMO:0000105)573779642118779642Rat
1598807Glom12Glomerulus QTL 122.7kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)53801167083011670Rat
1302786Kidm8Kidney mass QTL 828.15kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)53801167083011670Rat
61393Bp7Blood pressure QTL 74.50.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)565089051166764498Rat
1331782Rf36Renal function QTL 363.296kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)539019942102105896Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)551657967166600247Rat
1576312Emca8Estrogen-induced mammary cancer QTL 84.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)555124766172190305Rat
1641912Alcrsp18Alcohol response QTL 18response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)53998594884985948Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)5692228281330203Rat
7394708Emca11Estrogen-induced mammary cancer QTL 11mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)573176602118176602Rat
1576317Eutr2Estrogen induced uterine response QTL 20.01uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)53952692484526924Rat
1331773Scl26Serum cholesterol level QTL 263.065blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)54852312391770353Rat
1578673Bmd13Bone mineral density QTL 134.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)569474415114474415Rat
70189Mcs5Mammary carcinoma susceptibility QTL 510.51mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)560601597137492949Rat
1331771Rf35Renal function QTL 354.36965kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)51001906491770353Rat
61359EaexExperimental allergic encephalomyelitis QTL x3nervous system integrity trait (VT:0010566)post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)560511627105511627Rat
2290448Scl54Serum cholesterol level QTL 542.93blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)536460764136631402Rat
61426Scl2Serum cholesterol level QTL 27.30.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)564589016109589016Rat
1354598Srn6Serum renin concentration QTL 63.8blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)574335621156302135Rat
2290005Mcs24Mammary carcinoma susceptibility QTL 24mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)569835120114835120Rat
1331756Rf34Renal function QTL 344.16275kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)51001906487027358Rat
2306971Anxrr21Anxiety related response QTL 219.47fear/anxiety-related behavior trait (VT:1000241)number of entries into a discrete space in an experimental apparatus (CMO:0000960)570969494136328156Rat
2316954Rf57Renal function QTL 570kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)56458901693503770Rat
2316959Gluco59Glucose level QTL 594.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)556546393101546393Rat
2312671Scl64Serum cholesterol level QTL 640.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)573779642118779642Rat
2316957Pur21Proteinuria QTL 216.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)56458901691762830Rat


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSRNOT00000043610   ⟹   ENSRNOP00000044275
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl575,985,796 - 75,986,238 (-)Ensembl
Rnor_6.0 Ensembl578,392,715 - 78,393,143 (-)Ensembl
RefSeq Acc Id: XM_039111065   ⟹   XP_038966993
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8581,001,147 - 81,002,378 (-)NCBI
mRatBN7.2575,985,785 - 75,986,272 (-)NCBI
Protein Sequences
Protein RefSeqs XP_038966993 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000044275.3
  ENSRNOP00000049635.1
RefSeq Acc Id: XP_038966993   ⟸   XM_039111065
- UniProtKB: D3ZX87 (UniProtKB/TrEMBL),   D3ZU04 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000044275   ⟸   ENSRNOT00000043610

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZX87-F1-model_v2 AlphaFold D3ZX87 1-143 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:6500827 AgrOrtholog
BioCyc Gene G2FUF-41085 BioCyc
Ensembl Genes ENSRNOG00000030296 Ensembl, UniProtKB/TrEMBL
  ENSRNOG00000033024 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000042885.2 UniProtKB/TrEMBL
  ENSRNOT00000043610.3 UniProtKB/TrEMBL
Gene3D-CATH 3.10.440.10 UniProtKB/TrEMBL
InterPro Ribosomal_L31e UniProtKB/TrEMBL
  Ribosomal_L31e_CS UniProtKB/TrEMBL
  Ribosomal_L31e_dom_sf UniProtKB/TrEMBL
NCBI Gene LOC100910017 ENTREZGENE
PANTHER 60S RIBOSOMAL PROTEIN L31 UniProtKB/TrEMBL
  60S RIBOSOMAL PROTEIN L31 UniProtKB/TrEMBL
  PTHR10956 UniProtKB/TrEMBL
Pfam Ribosomal_L31e UniProtKB/TrEMBL
PhenoGen LOC100910017 PhenoGen
PROSITE RIBOSOMAL_L31E UniProtKB/TrEMBL
RatGTEx ENSRNOG00000030296 RatGTEx
  ENSRNOG00000033024 RatGTEx
SMART Ribosomal_L31e UniProtKB/TrEMBL
Superfamily-SCOP SSF54575 UniProtKB/TrEMBL
UniProt D3ZU04 ENTREZGENE, UniProtKB/TrEMBL
  D3ZX87 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-07-05 LOC100910017  60S ribosomal protein L31-like      Symbol and Name status set to provisional 70820 PROVISIONAL