Emca11 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL: Emca11 (Estrogen-induced mammary cancer QTL 11) Rattus norvegicus

Symbol: Emca11
Name: Estrogen-induced mammary cancer QTL 11
RGD ID: 7394708
Also known as: Emca8.1
Trait: mammary gland integrity trait   (VT:0010552)    
Measurement Type: mammary tumor number   (CMO:0000343)    
LOD Score: Not Available
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2599,753,548 - 113,061,097RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.05103,580,245 - 117,037,276RGD_MAPPER_PIPELINERnor6.0
Rnor_5.05107,580,080 - 120,980,183RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.45104,231,741 - 118,805,723RGD_MAPPER_PIPELINERGSC3.4
Cross Type: Not Available
Strains Crossed: ACI.BN-(D5Rat60-D5Rat115)/Shul 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Candidate Gene Status
Cdkn2a is a candidate Gene for Emca11
Cdkn2b is a candidate Gene for Emca11

Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain

References


Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
620276Sh3gl2SH3 domain containing GRB2 like 2, endophilin A15103479767103654507Rat
1306439Adamtsl1ADAMTS-like 15103789443104753866Rat
9108934LOC103692402uncharacterized LOC1036924025104344766104373550Rat
1583685Saxo1stabilizer of axonemal microtubules 15104771081104921001Rat
619804RragaRas-related GTP binding A5104941067104942662Rat
728889Plin2perilipin 25104984413105010863Rat
7623537LOC102547558uncharacterized LOC1025475585105031761105033047Rat
7660377LOC102547623uncharacterized LOC1025476235105054646105055402Rat
1308489Dennd4cDENN domain containing 4C5105100081105195634Rat
3602Rps6ribosomal protein S65105197821105200681Rat
1304629Acer2alkaline ceramidase 25105230540105279732Rat
11473324LOC10835110240S ribosomal protein S20 pseudogene5105296872105301607Rat
628650Slc24a2solute carrier family 24 member 25105336287105579959Rat
11471739LOC108351133glyceraldehyde-3-phosphate dehydrogenase pseudogene5105710203105711015Rat
11385824LOC108350994uncharacterized LOC1083509945105926938105944001Rat
11459931LOC108350995uncharacterized LOC1083509955105959268105968271Rat
7646050LOC102549274uncharacterized LOC1025492745106069933106076451Rat
620940Mllt3MLLT3, super elongation complex subunit5106103498106202559Rat
9252962LOC103692403uncharacterized LOC1036924035106328172106332047Rat
9251690LOC103692404uncharacterized LOC1036924045106353599106356064Rat
11454350LOC108351134uncharacterized LOC1083511345106361144106362318Rat
1311849Focadfocadhesin5106409411106729308Rat
7715317LOC102549336uncharacterized LOC1025493365106632734106634661Rat
1310339Hacd43-hydroxyacyl-CoA dehydratase 45106728401106758068Rat
2865Ifnb1interferon beta 15106865192106865746Rat
1306334Ifna4interferon, alpha 45106922563106923132Rat
1306135Ifna1interferon, alpha 15106951822106952908Rat
1589875LOC690903similar to Interferon alpha-1 precursor5106959525106960310Rat
1561246RGD1561246similar to put. precursor MuIFN-alpha 55106996094106996722Rat
1359312Ifna5interferon, alpha 55107039347107039925Rat
1561827RGD1561827similar to Interferon alpha-1 precursor5107048346107049081Rat
1583723LOC500494similar to Glycylpeptide N-tetradecanoyltransferase 1 (Peptide N-myristoyltransferase 1) (Myristoyl-CoA:protein N-myristoyltransferase 1) (NMT 1) (Type I N-myristoyltransferase)5107144671107148093Rat
1565065Ifneinterferon, epsilon5107178124107203908Rat
4888605Mir3554microRNA 35545107206509107206626Rat
2325391Mir31microRNA 315107206515107206620Rat
11490720LOC108348243interferon alpha-1-like5107267418107267948Rat
6503412LOC100909522uncharacterized LOC1009095225107288643107289531Rat
7580703LOC102549934uncharacterized LOC1025499345107290141107295017Rat
1591738LOC680462similar to ribosomal protein S245107316994107317458Rat
1304814Klhl9kelch-like family member 95107323258107327442Rat
11392135LOC10835099760S ribosomal protein L27a-like5107331938107333839Rat
1583724LOC500492similar to Interferon alpha-1 precursor5107338521107340094Rat
1559679RGD1559679similar to Interferon alpha-1 precursor5107355189107356089Rat
6487699LOC100912314interferon alpha-1-like5107369378107370443Rat
6502836LOC100909643interferon alpha-1-like5107382726107383824Rat
6487214LOC100912356interferon alpha-1-like5107387566107388182Rat
1311425Ifna2interferon alpha 25107416117107416695Rat
1564637RGD1564637similar to interferon alpha 8/6 precursor; IFNa8/6 (B6)5107428899107429634Rat
1565225Ifna16l1interferon, alpha 16-like 15107446898107447636Rat
1564897RGD1564897similar to Interferon alpha-1 precursor5107460197107460813Rat
1306400Ifna11interferon alpha family, gene 115107504741107505783Rat
2318341LOC100362345hypothetical protein LOC1003623455107608029107608906Rat
11413299LOC108350998uncharacterized LOC1083509985107612541107620590Rat
1310114Mtapmethylthioadenosine phosphorylase5107711077107777530Rat
11463393LOC108351069methyltransferase-like protein 16 pseudogene5107730558107733390Rat
1584926LOC366408similar to UPF0279 protein C14orf129 homolog5107780650107781070Rat
2323Cdkn2acyclin-dependent kinase inhibitor 2A5107823323107832405Rat
7731710LOC102552336cyclin-dependent kinase inhibitor 2A, isoform 2-like5107834353107841298Rat
2324Cdkn2bcyclin-dependent kinase inhibitor 2B5107834353107857428Rat
7697358LOC102552523uncharacterized LOC1025525235107944093107966158Rat
1588220Hspd1-ps14heat shock protein 1, pseudogene 145107966604107968753Rat
11433856LOC108350999uncharacterized LOC1083509995107969449107989209Rat
9404082LOC103692411uncharacterized LOC1036924115108273180108277787Rat
1309796Dmrta1DMRT-like family A15108278217108284757Rat
1584925LOC366410similar to RIKEN cDNA 4933403M225108474323108475393Rat
1560729RGD1560729similar to ribosomal protein S245108607099108607560Rat
1310095Zfp353zinc finger protein 3535108746039108748596Rat
1583722LOC500497similar to Elongation factor 1-gamma (EF-1-gamma) (eEF-1B gamma)5108757056108807017Rat
1585888LOC680901hypothetical protein LOC6809015108982919108989666Rat
1584923LOC366414similar to 40S ribosomal protein S7 (S8)5109440686109441303Rat
628611Elavl2ELAV like RNA binding protein 25109499410109651829Rat
7697001LOC102554261high mobility group protein B1-like5109768833109770244Rat
7592700LOC102554351uncharacterized LOC1025543515109897374109910920Rat
6498231LOC10091046160 kDa heat shock protein, mitochondrial-like5109936990109941648Rat
7583391LOC10255443560S ribosomal protein L17-like5110213472110214221Rat
1563227Zfp352zinc finger protein 3525110325096110326940Rat
6498356LOC100910489kinectin-like5110610695110684400Rat
2324467Izumo3IZUMO family member 35110703837110706655Rat
11416818LOC108351001uncharacterized LOC1083510015110706779110725926Rat
1560983RGD1560983RGD15609835110735799110737001Rat
2323226LOC100363317signal peptidase complex subunit 2 homolog5110743404110744369Rat
11418076LOC108351000uncharacterized LOC1083510005110751187110772073Rat
1583529Cks1lCDC28 protein kinase regulatory subunit 1-like5110831843110832242Rat
1561150RGD1561150similar to CPN10-like protein5110978336110978644Rat
9359318LOC10369526760S ribosomal protein L7a pseudogene5111051670111054021Rat
1592091LOC298243similar to 60S ribosomal protein L55111058807111059674Rat
7671911LOC10255537360S ribosomal protein L7-like5111265406111269304Rat
7573615LOC102555548glyceraldehyde-3-phosphate dehydrogenase-like5111853327111855231Rat
1592090LOC298245similar to Nhp2 non-histone chromosome protein 2-like 15111905187111905577Rat
11426018LOC108351002uncharacterized LOC1083510025112113645112120779Rat
7551042LOC102546747uncharacterized LOC1025467475112340596112355251Rat
7543605LOC102546952uncharacterized LOC1025469525112395189112481708Rat
1564097RGD1564097similar to ribosomal protein L195112458451112459079Rat
9284656LOC103692415uncharacterized LOC1036924155112846150112856223Rat
9289467LOC103692416uncharacterized LOC1036924165113190650113202940Rat
1560251Caap1caspase activity and apoptosis inhibitor 15113479416113532961Rat
621245Plaaphospholipase A2, activating protein5113548913113578928Rat
11510233LOC108351003uncharacterized LOC1083510035113555202113558173Rat
1359704Ift74intraflagellar transport 745113579065113682485Rat
1591722Lrrc19leucine rich repeat containing 195113614164113626834Rat
2325363Mir872microRNA 8725113657727113657807Rat
620980TekTEK receptor tyrosine kinase5113725717113852799Rat
1563332Eqtnequatorin5113852191113881142Rat
1311787Mysm1myb-like, SWIRM and MPN domains 15113902115113939083Rat
11418089LOC108351004uncharacterized LOC1083510045113970613113983165Rat
11383635LOC108351136uncharacterized LOC1083511365113984225113985625Rat
2943JunJun proto-oncogene, AP-1 transcription factor subunit5114011184114014277Rat
6494360LOC100911221uncharacterized LOC1009112215114014532114066203Rat
7687331LOC102550174uncharacterized LOC1025501745114035704114066203Rat
7593337LOC102550339uncharacterized LOC1025503395114224949114231394Rat
1359429FggyFGGY carbohydrate kinase domain containing5114516860114901571Rat
7704849LOC102551440uncharacterized LOC1025514405114719920114725623Rat
9232304LOC103692419uncharacterized LOC1036924195114734825114787958Rat
9417869LOC103692418uncharacterized LOC1036924185114734825114828061Rat
1309987Hook1hook microtubule-tethering protein 15114940053115000691Rat
6486125LOC100912642cytochrome P450 2J3-like5115021650115066897Rat
1563215Cyp2j10cytochrome P450, family 2, subfamily j, polypeptide 105115067847115101961Rat
7729761LOC102551652uncharacterized LOC1025516525115101847115125660Rat
631442Cyp2j3cytochrome P450, family 2, subfamily j, polypeptide 35115196982115222084Rat
7686499LOC102552850ferritin light chain 1-like5115224485115225516Rat
11381498LOC108351103ferritin light chain 1 pseudogene5115224820115225315Rat
6490232LOC100911891cytochrome P450 2J5-like5115227854115235345Rat
1560146RGD1560146similar to hypothetical protein MGC348375115320125115388963Rat
1597743LOC685139similar to BWK-15115539079115540575Rat
1592089LOC298257similar to TBC1 domain family, member 55115541490115549909Rat
9409909LOC103692444uncharacterized LOC1036924445115563197115587649Rat
11369796LOC108351137glyceraldehyde-3-phosphate dehydrogenase5115649077115650141Rat
9273030LOC10369242060S acidic ribosomal protein P1 pseudogene5116182906116183233Rat
9109493LOC10369244560S acidic ribosomal protein P1 pseudogene5116183240116183579Rat
7502785LOC102553524uncharacterized LOC1025535245116206103116222950Rat
3170Nfianuclear factor I/A5116421895116750381Rat
7658054LOC102553166uncharacterized LOC1025531665116443978116446858Rat
9397374LOC103692422uncharacterized LOC1036924225116529135116532427Rat
9320162LOC103692421uncharacterized LOC1036924215116531126116532351Rat
11423781LOC108351112uncharacterized LOC1083511125116688733116699793Rat
11413852LOC108351005uncharacterized LOC1083510055116773530116780831Rat
6489434LOC100912024uncharacterized LOC1009120245116972453116973674Rat
1305442Tm2d1TM2 domain containing 15116992405117038882Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10321D5Lev171235107832238107832360Ratregion
10826D5Mgh231225114014818114014945Ratregion
10827D5Lev152925114011820114012111Ratregion
34041D5Mit51445108092659108092802Ratregion
37644D5Rat1152035116394940116395137Ratregion
36687D5Rat251745117037089117037276Ratregion
35074D5Rat232055105924457105924655Ratregion
35785D5Rat242965105106199105106485Ratregion
40548D5Rat1551545114706299114706448Ratregion
38508D5Rat602465105304453105304696Ratregion
39066D5Rat712155114085434114085645Ratregion
42750D5Rat2312375103712472103712707Ratregion
41192D5Rat1522205106659516106659741Ratregion
41424D5Rat1561755114384129114384298Ratregion
42319D5Rat2562405113059816113060055Ratregion
41560D5Rat1531635107119214107119704Ratregion
41560D5Rat1531635107119214107119383Ratregion
41576D5Rat1511595103580245103580403Ratregion
41678D5Rat1971815116401460116401612Ratregion
43934D5Got301335104577904104578036Ratregion
43935D5Got281395105500674105500812Ratregion
43936D5Got1311535104939992104940140Ratregion
43940D5Got271705108485891108486060Ratregion
43941D5Wox231105110527467110527584Ratregion
43942D5Got331385114193050114193184Ratregion
43943D5Got361265113264076113264201Ratregion
43944D5Wox182735116425636116425903Ratregion
43945D5Got391875116914757116914941Ratregion
43948D5Got381475116368546116368692Ratregion
60480D5Got251255110260813110260935Ratregion
60481D5Got312325105544278105544509Ratregion
60483D5Got342775115525402115525678Ratregion
60484D5Got351605115541537115541696Ratregion
60808D5Wox251585113175505113175651Ratregion
69515D5Uwm231865105444977105445160Ratregion
69519D5Uwm251865105226663105226848Ratregion
69521D5Uwm261335105688302105688442Ratregion
69523D5Uwm271455106847757106847921Ratregion
69527D5Uwm291635113838123113838385Ratregion
62484D5Uia21335108892419108892551Ratregion
66444D5Uia123925111521516111521893Ratregion
629614D5Hmgc11675105212209105212376Ratregion
629614D5Hmgc11675105200184105200351Ratregion
67361D5Arb172445114014673114014916Ratregion
1627770D5Wox415105338953105339126Ratregion
1635885D5Got2431275111320010111320136Ratregion
1634628D5Got2411955103941009103941203Ratregion
7794818D5Mco472185116151523116151740Ratregion
7192368Elavl2665109502531109502596Ratregion
7365003rs6578575005105452223105452223Ratregion
7365007rs10513324505110704110110704110Ratregion
7206270Mysm16175113912083113912699Ratregion
5035971PMC337033P12255109501276109502064Ratregion
5035971PMC337033P12255109501276109501500Ratregion
5036097UniSTS:1412181755106467075106467258Ratregion
5036380Jun4265114013614114014039Ratregion
5039140RH1275351875107607673107607859Ratregion
5036653AU0487272315115924809115925039Ratregion
5031294PMC129043P12915114014374114014664Ratregion
5033877RH1404521655104997083104997247Ratregion
5028681RH80440895116488657116488745Ratregion
5031478AU0481911105104541999104542108Ratregion
5028927RH1428512445117022849117023092Ratregion
5031720AU0473711035105461768105461870Ratregion
5029379RH1445711595116391715116391873Ratregion
5032109RH94433975106865094106865190Ratregion
5032361AI1204901315103655410103655540Ratregion
5032361AI1204901315103655094103655540Ratregion
5027073D1S34192605116752397116752653Ratregion
5029705BI2902611225114335007114335814Ratregion
5035338BM3864221555105946052105946206Ratregion
5035410AI0076031925105342067105342258Ratregion
502786315.MMHAP53FRE9.seq2095105002108105002316Ratregion
5025424RH1282621915106467083106467282Ratregion
502793135.MMHAP28FLD5.seq1815113122723113122903Ratregion
5028029MHAa43g3.seq1055113199414113199518Ratregion
5030775AW5351851535107848238107848390Ratregion
5033567RH1392971715106247221106247391Ratregion
5028241D4Mit1541445115387872115388015Ratregion
5028243D4Mit1651825109360344109360525Ratregion
5033769RH1400532195104997087104997305Ratregion
5056839RH1446102065106124534106124739Ratregion
5057098D5Lev121055113840671113840775Ratregion
5057404AA9631301995116757318116757516Ratregion
5055315RH1437301525116545328116545479Ratregion
5058958BE1026141775116403737116403913Ratregion
505217916.MHAa96b4.seq1545109192615109192768Ratregion
5059062BI2783692145107755383107755595Ratregion
5053447RH1426542545104953499104953752Ratregion
5050786RH1342571955116313282116313476Ratregion
5052915RH1423471885114011394114011585Ratregion
5047482RH1323532135106064572106064786Ratregion
5047538RH1323851895115197017115197205Ratregion
5045572RH1312552035105213323105213525Ratregion
5045572RH1312552035105201298105201500Ratregion
5047704RH1324801975106729018106729214Ratregion
5048222RH1327782175106732397106732613Ratregion
5047142RH1321571875116996797116996983Ratregion
5048372RH1328652125115068097115068308Ratregion
5042318RH1293652165105279375105279590Ratregion
5042444RH1294372085114030917114031125Ratregion
5042388RH1294052045105334774105334977Ratregion
5041180RH1287081995113682249113682447Ratregion
5075302RH1385162185113851959113852176Ratregion
5075366RH1385531205113784732113784851Ratregion
5076520RH1392232415106346280106346520Ratregion
5075550RH1386581965105207206105207401Ratregion
5075550RH1386581965105195181105195376Ratregion
5076478RH1391981605106102450106102609Ratregion
5079796RH1412082095113902438113902646Ratregion
5078068RH1401252005107758074107758273Ratregion
5072876RH1371052015105279385105279585Ratregion
5072908RH1371231805113852606113852785Ratregion
5079352RH1409441815104942334104942514Ratregion
5071340RH1350261835114980656114980838Ratregion
5067534AU0476872245103749895103750116Ratregion
5067706AU0475841965103628140103628296Ratregion
5067706AU0475841965103628101103628296Ratregion
5068230AU0472711755110776257110776431Ratregion
5068238AU0472662325115842232115842463Ratregion
5068536AU0470872665114687517114687781Ratregion
5069160AU046684845114504512114504596Ratregion
5060104AI0723721835113466965113467147Ratregion
5062258BE1064082015112355026112355226Ratregion
5063654BE1079192105104771616104771825Ratregion
5063724BF4047741805106426812106426991Ratregion
5062412BF3978971355108284570108284704Ratregion
5060756BF3890911615108273219108273379Ratregion
5062546BI2889681895116441496116441684Ratregion
5062790AW5344381645104946394104946557Ratregion
5061050AI1459521855115198961115199145Ratregion
5063096BE1071211545116756928116757081Ratregion
5066330PMC152658P33485114011810114012157Ratregion
5061504BE1119052085106171234106171441Ratregion
5063176BE1138492115105380626105380836Ratregion
5086991BE1068091635107177740107177902Ratregion
5082077BF4159481925105544693105544884Ratregion
5087516PMC26775P15865106865239106865824Ratregion
5087953Elavl41595109500915109501073Ratregion
5089617AU0492611405109745919109746058Ratregion
5090119AU0495612185110396798110397015Ratregion
5085012AI0095531155116206877116206991Ratregion
5082357BE1192431825107731219107731383Ratregion
5088597AU0486641995111731261111731461Ratregion
5081246RH1420501875113906812113907789Ratregion
5081284RH1420722095105276879105277087Ratregion
5085916BM3851611545114065878114066031Ratregion
5085922BM3851741565116389872116390027Ratregion
5084616AA8507361905113547499113547688Ratregion
5084018AI2324231105113615820113615929Ratregion
5084024AI4075721155114011381114011495Ratregion
5503958UniSTS:2569462675114012894114013160Ratregion
5503680ELAVL2__75779485109501089109502600Ratregion
5503845Nmt12795107148121107148401Ratregion
5504010px-21e121355109855355109855489Ratregion
5504626PMC316663P32395107853470107853708Ratregion
5504336D11S27838205111215550111216369Ratregion
5506873G470712225103646221103646442Ratregion
5499589At-8BJ-00805104598267104599484Ratregion
5501179PMC152255P11485107832245107832392Ratregion
5501205PMC153970P11565114012415114012570Ratregion
5504698PMC55707P110055114012415114013419Ratregion
5505275Elavl24705109502061109502530Ratregion
5505275Elavl24705109501497109502530Ratregion
5502311RH1243872305105207386105207615Ratregion
5502311RH1243872305105195361105195590Ratregion
Position Markers

Flank 1: (D5Rat151)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2599,753,548 - 99,753,708 (+)MAPPER
Rnor_6.05103,580,245 - 103,580,403NCBI
Rnor_5.05107,580,081 - 107,580,201NCBI
Rnor_5.05107,580,080 - 107,580,201NCBI
RGSC_v3.45104,231,741 - 104,231,900RGD
RGSC_v3.45104,231,742 - 104,231,900UniSTS
RGSC_v3.15104,236,968 - 104,237,126RGD
Celera598,259,651 - 98,259,809UniSTS
RH 3.4 Map5742.7UniSTS
RH 3.4 Map5742.7RGD
RH 2.0 Map5653.0RGD
Cytogenetic Map5q31UniSTS
Flank 2: (D5Rat25)
Rat AssemblyChrPosition (strand)Source
mRatBN7.25113,060,909 - 113,061,097 (+)MAPPER
Rnor_6.05117,037,089 - 117,037,276NCBI
Rnor_5.05120,979,996 - 120,980,183UniSTS
RGSC_v3.45118,805,535 - 118,805,723RGD
RGSC_v3.45118,805,536 - 118,805,723UniSTS
RGSC_v3.15118,810,762 - 118,810,949RGD
Celera5111,631,991 - 111,632,178UniSTS
RH 3.4 Map5789.6UniSTS
RH 3.4 Map5789.6RGD
SHRSP x BN Map561.5499UniSTS
SHRSP x BN Map561.5499RGD
Cytogenetic Map5q33UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70212Niddm25Non-insulin dependent diabetes mellitus QTL 253.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)51136640934Rat
7394712Emca13Estrogen-induced mammary cancer QTL 13mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)59514842103580403Rat
634305Mamtr1Mammary tumor resistance QTL 10.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)512651967117554267Rat
2290448Scl54Serum cholesterol level QTL 542.93blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)531926122136640934Rat
1576317Eutr2Estrogen induced uterine response QTL 20.01uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)535225432108092802Rat
2316959Gluco59Glucose level QTL 594.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)535661945117554267Rat
1641912Alcrsp18Alcohol response QTL 18response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)535788756147487820Rat
1549845Scl44Serum cholesterol level QTL 446blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)540777918154732375Rat
1331801Rf33Renal function QTL 334.149kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)544404276134502294Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)547745646167946134Rat
1576312Emca8Estrogen-induced mammary cancer QTL 84.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)551418671147487820Rat
70189Mcs5Mammary carcinoma susceptibility QTL 510.51mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)556991667137729065Rat
1358895Bp254Blood pressure QTL 2543.60.0003arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)560072951133313852Rat
61426Scl2Serum cholesterol level QTL 27.30.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)561086525149030144Rat
2316957Pur21Proteinuria QTL 216.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)561086653117554114Rat
61393Bp7Blood pressure QTL 74.50.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)561612600168109659Rat
2306971Anxrr21Anxiety related response QTL 219.47fear/anxiety-related behavior trait (VT:1000241)number of entries into a discrete space in an experimental apparatus (CMO:0000960)565696672129038896Rat
2290005Mcs24Mammary carcinoma susceptibility QTL 24mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)568838385113838385Rat
1357396Bw44Body weight QTL 444.19body mass (VT:0001259)body weight (CMO:0000012)571154828108092802Rat
1357402Bw46Body weight QTL 464.47body mass (VT:0001259)body mass index (BMI) (CMO:0000105)571154828108092802Rat
2312671Scl64Serum cholesterol level QTL 640.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)571154828108092802Rat
2302381Bw84Body weight QTL 844.47body mass (VT:0001259)body mass index (BMI) (CMO:0000105)571154828108092802Rat
61380Edpm5Estrogen-dependent pituitary mass QTL 54.50.92pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)571154828108092802Rat
1354598Srn6Serum renin concentration QTL 63.8blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)571552569157225114Rat
1298070Scl18Serum cholesterol level QTL 183.7blood LDL cholesterol amount (VT:0000181)calculated plasma low density lipoprotein cholesterol level (CMO:0001245)583424556128424556Rat
1598846Bp293Blood pressure QTL 2933.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)583424556128424556Rat
1598859Cm66Cardiac mass QTL 662heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)583424556128424556Rat
1302790Scl20Serum cholesterol level QTL 206.40.0001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)584963058173504662Rat
1298086Bp156Blood pressure QTL 156arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)589502294134502294Rat
7411582Foco3Food consumption QTL 37.50.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)591585539136585539Rat
7411601Foco12Food consumption QTL 1219.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)591585539136585539Rat
7411564Bw135Body weight QTL 1350.001body mass (VT:0001259)body weight gain (CMO:0000420)591585539136585539Rat
6903316Bw113Body weight QTL 11320.0103body mass (VT:0001259)body weight (CMO:0000012)591884213136884213Rat
1358889Bp261Blood pressure QTL 2612.86arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)593037304133313852Rat
1358909Kidm25Kidney mass QTL 251.87kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)593037304133313852Rat
631527Tls1T-lymphoma susceptibility QTL 100.001thymus integrity trait (VT:0010555)post-insult time to onset of T-cell lymphoma (CMO:0001907)593273130138273130Rat
61452Ciaa5CIA Autoantibody QTL 53.5blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)597921932149030144Rat
1331796Thshl2Thyroid stimulating hormone level QTL 22.3blood thyroid-stimulating hormone amount (VT:0005119)serum thyroid stimulating hormone level (CMO:0001248)5100723739153577831Rat
2317753Glom24Glomerulus QTL 243.1kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)5101265591141912026Rat
1582212Livw2Liver weight QTL 23.50.0004liver mass (VT:0003402)liver weight as percentage of body weight (CMO:0000141)5102498468123852688Rat
1358187Emca1Estrogen-induced mammary cancer QTL 14.4mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)5102945579154732228Rat
1600362Mcs19Mammary carcinoma susceptibility QTL 192.5mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)5103265614107119704Rat
7394708Emca11Estrogen-induced mammary cancer QTL 11mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)5103580245117037276Rat
1578673Bmd13Bone mineral density QTL 134.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)5107119214152119214Rat
2317056Wbc3White blood cell count QTL 32.510.01leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)5111278451156278451Rat
1549838Bss4Bone structure and strength QTL 49.2femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)5112279412157279412Rat
7207481Bss106Bone structure and strength QTL 1067.9femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)5112279412157279412Rat
7207486Bss109Bone structure and strength QTL 109femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)5112279412157279412Rat
7207488Bss110Bone structure and strength QTL 18.4femur strength trait (VT:0010010)femur stiffness (CMO:0001674)5112279412157279412Rat
7207491Bss112Bone structure and strength QTL 1127femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)5112279412157279412Rat
8657050Bw146Body weight QTL 14619.840.001body mass (VT:0001259)body weight gain (CMO:0000420)5113059816120566842Rat
1298089Scl14Serum cholesterol level QTL 145.80.0004blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)5114140832159140832Rat
1598847Cm62Cardiac mass QTL 623.4heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5114140832159140832Rat
7794743Bp373Blood pressure QTL 3730.0058arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5116151740120258073Rat
8552960Pigfal15Plasma insulin-like growth factor 1 level QTL 15blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5116767924161767924Rat
8694198Abfw3Abdominal fat weight QTL 316.130.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)5116767924161767924Rat
8694389Bw160Body weight QTL 1606.170.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)5116767924161767924Rat
8694441Bw169Body weight QTL 16917.610.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)5116767924161767924Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_general orthologous to 9p21 breast cancer locus in humans that was identified in the genome-wide studies 7364727
qtl_general measurement method: animals were examined for palpable mammary tumors 7 weeks after the E2 treatment, size and location was recorded; animals were killed when the tumors were ~2 cm 7364727
qtl_general inducing agent: 17beta-estradiol (E2) for 196 days 7364727