Bmd38 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL: Bmd38 (Bone mineral density QTL 38) Rattus norvegicus

Symbol: Bmd38
Name: Bone mineral density QTL 38
RGD ID: 2293666
Trait: femur size trait   (VT:1000369)    
Measurement Type: femoral neck cortical cross-sectional area   (CMO:0001702)    
LOD Score: 4.4
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.258,948,228 - 53,948,228RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.058,632,285 - 53,632,285RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0513,440,622 - 58,440,622RGDRnor5.0
RGSC_v3.458,464,827 - 40,137,122RGDRGSC3.4
Cross Type: intercross
Strains Crossed: COP/OlaHsd DA/OlaHsd 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View
osteoporosis  (IAGP)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Vertebrate Trait

Rat Strain
COP/OlaHsd  (IEA)
DA/OlaHsd  (IEA)

References

References - curated
1. Alam I, etal., J Bone Miner Res. 2008 Feb 18;.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1560793Arfgef1ADP ribosylation factor guanine nucleotide exchange factor 1586660468760458Rat
1307055Cspp1centrosome and spindle pole associated protein 1587612938876205Rat
9387527LOC103692277uncharacterized LOC103692277587784038780084Rat
1310301Cops5COP9 signalosome subunit 5588760908894345Rat
1585679Ppp1r42protein phosphatase 1, regulatory subunit 42589113568956313Rat
1589398Tcf24transcription factor 24589571078961523Rat
1561068Mcmdc2minichromosome maintenance domain containing 2589738619039616Rat
7721328LOC102556004uncharacterized LOC102556004589779798980098Rat
620242Sgk3serum/glucocorticoid regulated kinase family, member 3590468899094740Rat
9128438LOC103692279uncharacterized LOC103692279591768239181124Rat
1586147LOC362473similar to Elongation factor 1-gamma (EF-1-gamma) (eEF-1B gamma)591976689202079Rat
708520Vcpip1valosin containing protein interacting protein 1592311809257821Rat
1306940Mybl1MYB proto-oncogene like 1592797569315112Rat
1561849Vxnvexin593554909381161Rat
1308863Adhfe1alcohol dehydrogenase, iron containing, 1594031949429783Rat
1311403Rrs1ribosome biogenesis regulator 1 homolog594307109432343Rat
1585836LOC680953similar to RIKEN cDNA G430041M01597837679785556Rat
1560290Sntg1syntrophin, gamma 151011890110493094Rat
9350531LOC103692280uncharacterized LOC10369228051022413410228824Rat
7736060LOC102546452uncharacterized LOC10254645251052267110538631Rat
1584848LOC502938similar to Heterogeneous nuclear ribonucleoprotein A1 (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) (HDP-1) (Topoisomerase-inhibitor suppressed)51061062710611725Rat
1585792LOC680997similar to Kinesin-like protein KIF1C (Kinesin-like protein KIF1D)51066097710663752Rat
7499437LOC102546531uncharacterized LOC10254653151070686210718451Rat
11362617LOC108351118uncharacterized LOC10835111851076894610771939Rat
2318732LOC100362151argonaute 251077198810774859Rat
9452275LOC103692281BET1 homolog pseudogene51140627411406632Rat
11360539LOC108351079LINE-1 retrotransposable element ORF1 protein-like51159342611782930Rat
2318503LOC100362282PRAME family member 1251169953311700911Rat
1598345LOC297793similar to Aspartate aminotransferase, mitochondrial precursor (Transaminase A) (Glutamate oxaloacetate transaminase 2)51206545112066689Rat
1586096Pcmtd1protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 151213265712204376Rat
2318359LOC100362326TIP41, TOR signalling pathway regulator-like51230983312310715Rat
6494602LOC10091113440S ribosomal protein S15-like51231273412313121Rat
1564095RGD1564095similar to 60S acidic ribosomal protein P251240641512407348Rat
708566St18ST18 C2H2C-type zinc finger transcription factor51243761712787223Rat
1583530Alkal1ALK and LTK ligand 151289613612925571Rat
1309346Rb1cc1RB1-inducible coiled-coil 151303391813097369Rat
7618446LOC102549737uncharacterized LOC10254973751312647813144882Rat
7711861LOC102549805uncharacterized LOC10254980551316328213168319Rat
1305917Npbwr1neuropeptides B and W receptor 151337977213380761Rat
1586095LOC366301similar to proteasome 26S non-ATPase subunit 1251348366513591510Rat
11517012LOC108351080endogenous retrovirus group K member 9 Pol protein-like51361892713725091Rat
69426Oprk1opioid receptor, kappa 151374265513760460Rat
2318103LOC100362485NHP2 ribonucleoprotein homolog51380890713811706Rat
11385100LOC108350923uncharacterized LOC10835092351418686014190448Rat
1562450Atp6v1hATPase H+ transporting V1 subunit H51426235214367898Rat
1586146Rgs20regulator of G-protein signaling 2051436749814494048Rat
7536477LOC10255335960 kDa heat shock protein, mitochondrial-like51438077314384382Rat
1309880Tcea1transcription elongation factor A151451118314548494Rat
3025Lypla1lysophospholipase 151455933314588447Rat
9114432LOC103692292uncharacterized LOC10369229251459213414593173Rat
9110683LOC103692293uncharacterized LOC10369229351459781614606944Rat
1304796Mrpl15mitochondrial ribosomal protein L1551460965614620965Rat
7637993LOC102552817uncharacterized LOC10255281751484599814889904Rat
1305371Sox17SRY-box transcription factor 1751489031814895907Rat
1595256Sumo4small ubiquitin-like modifier 451498338214984134Rat
1596713Rp1RP1, axonemal microtubule associated51500502815060508Rat
1565647Cyld-ps1cylindromatosis (turban tumor syndrome), pseudogene 151508733615091641Rat
9219053LOC103692294uncharacterized LOC10369229451509567915152948Rat
7688265LOC102553195lipoxygenase homology domain-containing protein 1-like51535967215454146Rat
1549780Xkr4XK related 451574601216141059Rat
7645366LOC102553560uncharacterized LOC10255356051584512515846090Rat
9323738LOC103695237uncharacterized LOC10369523751595177315959442Rat
1309006Tmem68transmembrane protein 6851636390816413307Rat
1309953Tgs1trimethylguanosine synthase 151641335616446881Rat
1564981RGD1564981similar to Nonspecific lipid-transfer protein, mitochondrial precursor (NSL-TP)51649707816497557Rat
621017LynLYN proto-oncogene, Src family tyrosine kinase51652605816642648Rat
621037Rps20ribosomal protein S2051670605216707214Rat
3103MosMOS proto-oncogene, serine/threonine kinase51674608516747392Rat
1597763LOC685119similar to DnaJ (Hsp40) homolog, subfamily B, member 651676511516766318Rat
2321393LOC100364265ribosomal protein L19-like51676695816782819Rat
1305286Plag1PLAG1 zinc finger51678818616842827Rat
1592689Chchd7coiled-coil-helix-coiled-coil-helix domain containing 751684325316847809Rat
1565999Sdr16c5short chain dehydrogenase/reductase family 16C, member 551690492616930111Rat
1562060Sdr16c6short chain dehydrogenase/reductase family 16C, member 651697252116996010Rat
68946Penkproenkephalin51705641217061762Rat
6486737LOC100912510uncharacterized LOC10091251051706302717065071Rat
1563405RGD1563405similar to protein tyrosine phosphatase 4a251739886517400510Rat
1596418LOC685279similar to zinc finger protein 65251770345917757791Rat
11453663LOC108350924uncharacterized LOC10835092451790259517919696Rat
9196141LOC103692307protein SON-like51844295018446389Rat
6502160LOC100909766peptidyl-prolyl cis-trans isomerase D-like51850499618516056Rat
9359784LOC103692295uncharacterized LOC10369229551857393518577996Rat
1563403Fam110bfamily with sequence similarity 110, member B51876248818903818Rat
6501591LOC100909800guanine nucleotide-binding protein subunit beta-2-like 1-like51896127018964281Rat
1565372RGD1565372similar to Ubiquitin-conjugating enzyme E2 C (Ubiquitin-protein ligase C)51897519618976104Rat
2321512LOC100360746adaptor-related protein complex AP-4, sigma 151905402319055086Rat
1308557Ubxn2bUBX domain protein 2B51928536819314199Rat
7595672LOC102549602uncharacterized LOC10254960251931197819321868Rat
2482Cyp7a1cytochrome P450 family 7 subfamily A member 151935873419368431Rat
7640679LOC102549899uncharacterized LOC10254989951941745819436320Rat
9174076LOC103692296uncharacterized LOC10369229651942335819435359Rat
6501967LOC100909734eukaryotic translation elongation factor 1 epsilon-1-like51943867319439355Rat
621497Sdcbpsyndecan binding protein51947166419498499Rat
727868Nsmafneutral sphingomyelinase activation associated factor51949911119560308Rat
9221215LOC103692297uncharacterized LOC10369229751972064919732650Rat
2321464LOC100360794eukaryotic translation elongation factor 1 epsilon 151973596419736646Rat
1310455Toxthymocyte selection-associated high mobility group box51989269820189721Rat
11397553LOC108350926uncharacterized LOC10835092651990576919907788Rat
7636366LOC102550748uncharacterized LOC10255074852027150520296404Rat
11441150LOC108350927uncharacterized LOC10835092752049977020500926Rat
1560994Gm5471predicted pseudogene 547152104327021043930Rat
1304709Ca8carbonic anhydrase 852124901821345810Rat
1563301RGD1563301similar to 40S ribosomal protein S1652147190521472420Rat
11375408LOC108350928uncharacterized LOC10835092852152520321528168Rat
7526543LOC102551006uncharacterized LOC10255100652154509221581795Rat
68323Rab2aRAB2A, member RAS oncogene family52163265421696721Rat
7653207LOC102551372uncharacterized LOC10255137252170580421716612Rat
1311921Chd7chromodomain helicase DNA binding protein 752176908721952036Rat
11374185LOC108350929uncharacterized LOC10835092952186901221887949Rat
9236010LOC103692298uncharacterized LOC10369229852200179822006240Rat
7729019LOC102552020uncharacterized LOC10255202052200589222008170Rat
1586092LOC366310pseudogene for small nuclear RNA U3 (H3.9)52202300422023125Rat
11517987LOC10835108140S ribosomal protein S18 pseudogene52202355222025004Rat
9199577LOC103692299uncharacterized LOC10369229952202948522030171Rat
11381653LOC108350930uncharacterized LOC10835093052204796822053026Rat
2324828LOC100363061proteasome 26S non-ATPase subunit 152205402822056068Rat
9685089Lnc056long non-coding RNA 05652212794922128392Rat
11449903LOC108350931uncharacterized LOC10835093152220266022212323Rat
1564200Clvs1clavesin 152238031822580391Rat
1312000Asphaspartate-beta-hydroxylase52257768022799333Rat
7686920LOC102553922uncharacterized LOC10255392252264058922670504Rat
9272632LOC103692300uncharacterized LOC10369230052297474222980468Rat
620104Gdf6growth differentiation factor 652305634523072666Rat
9170657LOC103692309uncharacterized LOC10369230952308441923092615Rat
7596051LOC102554126ribosome biogenesis protein NSA2 homolog52314991023150434Rat
11400924Trnas-aga1transfer RNA serine (anticodon AGA) 152335837623358457Rat
7580035LOC102554232protein C8orf37 homolog52335844623377697Rat
1549749Cfap418cilia and flagella associated protein 41852335846423377697Rat
2321121LOC100360939rCG21417-like52393910623939903Rat
11506662Trnas-aga2transfer RNA serine (anticodon AGA) 252414574124145822Rat
1549749Cfap418cilia and flagella associated protein 41852414582924165467Rat
7629665LOC102555924uncharacterized LOC10255592452422034824230769Rat
1312029Plekhf2pleckstrin homology and FYVE domain containing 252424024124255922Rat
11434367LOC108350932uncharacterized LOC10835093252425606124282359Rat
1586091LOC366312similar to 60S ribosomal protein L1152428557224286119Rat
11503786LOC108351119ferritin light chain 1 pseudogene52428976524292486Rat
1309085Ndufaf6NADH:ubiquinone oxidoreductase complex assembly factor 652429716924320804Rat
11383281LOC108351082microtubule cross-linking factor 1-like52439870224403170Rat
631423Tp53inp1tumor protein p53 inducible nuclear protein 152440289524419651Rat
7604960LOC102547431uncharacterized LOC10254743152442505024430285Rat
1307783Ccne2cyclin E252443407724446406Rat
1310592Ints8integrator complex subunit 852444600224493819Rat
1305828Dpy19l4dpy-19 like 452450307424560077Rat
1560481Esrp1epithelial splicing regulatory protein 152457698824631758Rat
6495230LOC10091102340S ribosomal protein S23-like52466526024665966Rat
7747666LOC102546982alpha-enolase-like52468967024691013Rat
1588818LOC688470similar to ribosomal protein L2452469371724694163Rat
9472653LOC103692301uncharacterized LOC10369230152470671224732134Rat
9135524LOC103695239uncharacterized LOC10369523952470905324754677Rat
9116417LOC103692302uncharacterized LOC10369230252475571924857347Rat
1564278RGD1564278similar to splicing-related factor RNPS152476243724763689Rat
1587633LOC688546similar to suppression of tumorigenicity 1352481409024815288Rat
1559441RGD1559441similar to MIC2L152486013224917047Rat
9302605LOC103692303uncharacterized LOC10369230352495022224953566Rat
7685320LOC102549900WD repeat and SOCS box-containing protein 1-like52500283225004686Rat
1559904Virmavir like m6A methyltransferase associated52504274325121403Rat
9470601LOC103692304protein virilizer homolog52512400425125745Rat
1306507Rad54bRAD54 homolog B52514053125214469Rat
7611658Fsbpfibrinogen silencer binding protein52516735025173138Rat
1307658Rbm12bRNA binding motif protein 12B52524799025257678Rat
2320072LOC100361493hypothetical LOC10036149352527933425281627Rat
7638920LOC102552309uncharacterized LOC10255230952528247925293066Rat
1307386GemGTP binding protein overexpressed in skeletal muscle52533947925353661Rat
619748Cdh17cadherin 1752535418725443675Rat
7731407LOC102552377uncharacterized LOC10255237752540175325419349Rat
9229752LOC103692305uncharacterized LOC10369230552543034525442616Rat
620393Pdp1pyruvate dehydrogenase phosphatase catalytic subunit 152557759325584325Rat
1586167Tmem67transmembrane protein 6752566613825721056Rat
1593040LOC679087similar to swan52572224725730014Rat
1310681Cibar1CBY1 interacting BAR domain containing 152573245725750953Rat
9134159LOC103692306uncharacterized LOC10369230652574603325747379Rat
7586726LOC102552692uncharacterized LOC10255269252581565325825103Rat
11366793LOC108350936uncharacterized LOC10835093652614245726164615Rat
1561260Triqktriple QxxK/R motif containing52649318526567491Rat
1305490Runx1t1RUNX1 partner transcriptional co-repressor 152728492127440802Rat
11398785LOC10835112060S ribosomal protein L17 pseudogene52756361327564170Rat
11472967LOC10835112160S ribosomal protein L29 pseudogene52764194627642464Rat
1597419LOC689067similar to DnaJ-like protein 252791263727913805Rat
1310846Slc26a7solute carrier family 26 member 752798665628131294Rat
1583733Lrrc69leucine rich repeat containing 6952813306628321877Rat
7708268LOC102553889uncharacterized LOC10255388952817148928186565Rat
1310024Otud6bOTU deubiquitinase 6B52833301928350093Rat
1306225Pip4p2phosphatidylinositol-4,5-bisphosphate 4-phosphatase 252839551728442924Rat
9305568LOC103692310uncharacterized LOC10369231052842756928430730Rat
6487307LOC100912373uncharacterized LOC10091237352848002928505430Rat
708548Necab1N-terminal EF-hand calcium binding protein 152850759628737556Rat
11444056LOC108350937ferritin light chain 1 pseudogene52858636028587293Rat
9092876LOC103692311uncharacterized LOC10369231152862674128629906Rat
1596128Tmem64transmembrane protein 6452885086428898203Rat
11485352LOC108350938uncharacterized LOC10835093852885266028861233Rat
9450948LOC103692312uncharacterized LOC10369231252888714928898203Rat
69340Calb1calbindin 152953838029562774Rat
70999Decr12,4-dienoyl-CoA reductase 152957389329601731Rat
2318778LOC100362104mitochondrial ribosomal protein L3052961063529611131Rat
621420Nbnnibrin52962234729656877Rat
1306323Osgin2oxidative stress induced growth inhibitor family member 252966313129683634Rat
11390418LOC108351068tubulin alpha-1D chain pseudogene52967535329681849Rat
1586088LOC366320similar to GA binding protein transcription factor, beta subunit 2 isoform beta 252976015329794996Rat
6503620Ube2wubiquitin-conjugating enzyme E2W52979884529812777Rat
7634675LOC102555863spindlin-2B-like52980208529809520Rat
1309167Ripk2receptor-interacting serine-threonine kinase 252983871329870390Rat
1593555LOC689308similar to cyclic nucleotide gated cation channel52992396929925383Rat
9401567LOC103692313uncharacterized LOC10369231353011296830129589Rat
1565988RGD1565988similar to Chain A, Bhmt From Rat Liver53064029130644952Rat
1560431RGD1560431similar to Karyopherin (importin) alpha 253071994630721702Rat
2318973LOC100362007protein phosphatase 1, catalytic subunit, gamma-like53072209530723929Rat
1593494LOC689370similar to Eukaryotic translation initiation factor 5 (eIF-5)53094017130941279Rat
620199Mmp16matrix metallopeptidase 1653156834431818368Rat
1592300Cnbd1cyclic nucleotide binding domain containing 153259028232956176Rat
9174086LOC103692314cyclic nucleotide-binding domain-containing protein 1-like53289503332956176Rat
7556989LOC102557253igE-binding protein-like53298836732994485Rat
11450784LOC108351083zinc finger protein 709 pseudogene53304806633049650Rat
6501520LOC100909785zinc finger protein 709-like53304837333048693Rat
9372977LOC103690228zinc finger protein 169-like53304903333061404Rat
1565364Cngb3cyclic nucleotide gated channel subunit beta 353309735333507467Rat
1595851LOC317416similar to inter alpha-trypsin inhibitor, heavy chain 453315670633169849Rat
70899Maged2MAGE family member D253317453933182715Rat
1310178Cpne3copine 353352530733574610Rat
9192930LOC103692316uncharacterized LOC10369231653353074833531132Rat
11498522LOC10835108460S ribosomal protein L7a pseudogene53356010633562303Rat
1563085Rmdn1regulator of microtubule dynamics 153358089133604564Rat
1311734Wwp1WW domain containing E3 ubiquitin protein ligase 153360848933696487Rat
11368319LOC108350939uncharacterized LOC10835093953362792133638672Rat
7678447LOC102548217partner of Y14 and mago-like53365506633656300Rat
11366942LOC10835108560S ribosomal protein L13 pseudogene53370238533709043Rat
1311633Slc7a13solute carrier family 7 member 1353378475733805446Rat
1306900Atp6v0d2ATPase H+ transporting V0 subunit D253384359133892446Rat
3915Ttpaalpha tocopherol transfer protein53400792634029315Rat
2682Gghgamma-glutamyl hydrolase53404025834063369Rat
1591051Nkain3Sodium/potassium transporting ATPase interacting 353413359634813668Rat
7745323LOC102551437ubiquitin-conjugating enzyme E2 variant 2-like53418203634182826Rat
9444073LOC103692317histone deacetylase 1 pseudogene53457648534581503Rat
1585101LOC691313similar to Caspase-3 precursor (CASP-3) (Apopain) (Cysteine protease CPP32) (Yama protein) (CPP-32) (SREBP cleavage activity 1) (SCA-1) (LICE) (IRP)53506259435063432Rat
1589948LOC689630hypothetical protein LOC68963053571338735714021Rat
6495713LOC10091099440S ribosomal protein S18-like53574891035749385Rat
1586086LOC366329similar to Heat shock protein HSP 90-beta (HSP 84) (Tumor-specific transplantation 84 kDa antigen) (TSTA)53577386435775815Rat
7720487LOC10254877160S ribosomal protein L9-like53579499135795561Rat
1589883Prdm13PR/SET domain 1353582102335831897Rat
70905Ccnccyclin C53586559835883732Rat
1563572Tstd3thiosulfate sulfurtransferase like domain containing 353589278335902243Rat
1310976Usp45ubiquitin specific peptidase 4553591676335984525Rat
11426160LOC10835094060S ribosomal protein L30-like53597651835977541Rat
1307395PnisrPNN interacting serine and arginine rich protein53599102836017952Rat
2324520LOC100362534K(lysine) acetyltransferase 2B-like53602026536023493Rat
2380Coq3coenzyme Q3 methyltransferase53602467336056664Rat
1562449Faxcfailed axon connections homolog, metaxin like GST domain containing53607656536135884Rat
7752398LOC102553984glyceraldehyde-3-phosphate dehydrogenase-like53636530436366143Rat
2324327LOC100362631PEST proteolytic signal containing nuclear protein-like53643923636441237Rat
1305724Fbxl4F-box and leucine-rich repeat protein 453655506136628920Rat
61946Pou3f2POU class 3 homeobox 253667745236683356Rat
7513176LOC102553820uncharacterized LOC10255382053668397836688937Rat
11486580LOC108351086glyceraldehyde-3-phosphate dehydrogenase pseudogene53682364136827541Rat
1586399LOC689901similar to TGF beta-inducible nuclear protein 153851570438520618Rat
9095720LOC103692318uncharacterized LOC10369231853852388438554194Rat
7622045LOC10255658460S ribosomal protein L7a-like53855995138560766Rat
1304693Mms22lMMS22-like, DNA repair protein53884450238960989Rat
9250632LOC103692319uncharacterized LOC10369231953896754838972003Rat
1310364Klhl32kelch-like family member 3253896847939215203Rat
7630538LOC102555041aldose reductase-like53897494738982344Rat
9117035LOC103692321zinc finger and SCAN domain containing protein 4D-like53903761239038739Rat
9138991LOC103692320uncharacterized LOC10369232053923084539238161Rat
6492721LOC100911464glutathione S-transferase P-like53923831139239035Rat
735162Ndufaf4NADH:ubiquinone oxidoreductase complex assembly factor 453925137039256542Rat
1306460Gpr63G protein-coupled receptor 6353925843839374187Rat
9225019LOC10369524660S ribosomal protein L39-like53929130839291542Rat
1307056Fhl5four and a half LIM domains 553956424139611273Rat
1309308Ufl1Ufm1-specific ligase 153961647939650894Rat
11421298LOC108351122igE-binding protein-like53977129139772272Rat
11488043LOC108350941uncharacterized LOC10835094153989982539904976Rat
619955Fut9fucosyltransferase 954003285540237591Rat
620327Maneamannosidase, endo-alpha54084510340867025Rat
1585166LOC690046hypothetical protein LOC69004654091093640942729Rat
6490958LOC10091177140S ribosomal protein S6-like54097028640971008Rat
7600470LOC102556499uncharacterized LOC10255649954165390241682468Rat
2322518LOC100360232hypothetical LOC10036023254286130842861619Rat
1584049LOC690119similar to ADP-ribosylation factor-like protein 654346931143469943Rat
70957Epha7Eph receptor A754360274443761198Rat
11464144LOC108350942uncharacterized LOC10835094254360316843605153Rat
1562265RGD1562265similar to ribosomal protein S1254427005744270455Rat
7530658LOC102549334uncharacterized LOC10254933454437656644380577Rat
11480254LOC108351124uncharacterized LOC10835112454445615244459048Rat
9283972LOC103692326uncharacterized LOC10369232654680843346827483Rat
11497676LOC108350943uncharacterized LOC10835094354692951046931021Rat
11388087LOC108350944uncharacterized LOC10835094454714975147163178Rat
1309438Map3k7mitogen activated protein kinase kinase kinase 754718314247244424Rat
7602303LOC102550818uncharacterized LOC10255081854739676247414343Rat
7665526LOC102551206uncharacterized LOC10255120654743200647447275Rat
11367945LOC108350945glyceraldehyde-3-phosphate dehydrogenase pseudogene54743617247441869Rat
7520008LOC102551110uncharacterized LOC10255111054744504247461968Rat
1562865Bach2BTB domain and CNC homolog 254745889147807176Rat
11491519LOC108350946uncharacterized LOC10835094654752101447528784Rat
1309630Gja10gap junction protein, alpha 1054781948447841138Rat
9401581LOC103692328uncharacterized LOC10369232854783303147848685Rat
1305771Casp8ap2caspase 8 associated protein 254785369947891147Rat
1306394Mdn1midasin AAA ATPase 154789452648036071Rat
1597334Lyrm2LYR motif containing 254804791348050191Rat
1583731Ankrd6ankyrin repeat domain 654805261048167568Rat
7676254LOC102552310uncharacterized LOC10255231054810819548111919Rat
9434881LOC103692341gamma-glutamylaminecyclotransferase-like54819445248206336Rat
1310007RragdRas-related GTP binding D54822499448260691Rat
11389431LOC108350947uncharacterized LOC10835094754826260148274304Rat
1305067Ube2j1ubiquitin-conjugating enzyme E2, J154827438748292699Rat
7504318LOC102555886ribonuclease P protein subunit p38-like54829450348297870Rat
61902Gabrr2gamma-aminobutyric acid type A receptor subunit rho 254830336648341571Rat
7651324LOC102555980uncharacterized LOC10255598054834628848353742Rat
61900Gabrr1gamma-aminobutyric acid type A receptor subunit rho 154837404848411170Rat
1307853Pm20d2peptidase M20 domain containing 254841600548437054Rat
1561162Srsf12serine and arginine rich splicing factor 1254845677748484017Rat
628753Pnrc1proline-rich nuclear receptor coactivator 154850147248504511Rat
11360528LOC108350948uncharacterized LOC10835094854854854348561255Rat
1311410RngttRNA guanylyltransferase and 5'-phosphatase54856132548779214Rat
9435428LOC103692329eukaryotic initiation factor 4A-I pseudogene54860749948610862Rat
11398296LOC108350949uncharacterized LOC10835094954869510848697705Rat
9372731LOC103692330uncharacterized LOC10369233054883615648867937Rat
7724358LOC102556460uncharacterized LOC10255646054884064048844468Rat
7658525LOC102556373uncharacterized LOC10255637354891065848926643Rat
1586082LOC366345similar to BCL2/adenovirus E1B 19kDa-interacting protein 1, NIP2 isoform beta54914745949148504Rat
11439912LOC108350950uncharacterized LOC10835095054926691649269688Rat
2369Cnr1cannabinoid receptor 154930758449333064Rat
9082336LOC103692331uncharacterized LOC10369233154935743849418482Rat
1560284Spaca1sperm acrosome associated 154942406449439180Rat
1594697LOC690563similar to SET translocation54978907549789806Rat
6499463LOC100910222ubiquitin-40S ribosomal protein S27a-like54981338549813857Rat
1594682LOC690581similar to chondroitin sulfate GalNAcT-254982091549823789Rat
11436894LOC108350951uncharacterized LOC10835095154995544449982811Rat
11505979LOC108350952uncharacterized LOC10835095254995584149962215Rat
1307791Akirin2akirin 255000194550016544Rat
1308457Orc3origin recognition complex, subunit 355001915950075533Rat
1305419Rars2arginyl-tRNA synthetase 2, mitochondrial55007551050127625Rat
1311359Slc35a1solute carrier family 35 member A155011988050142689Rat
1310641Cfap206cilia and flagella associated protein 20655014868550193580Rat
1563056RGD1563056similar to hypothetical protein55021030350221560Rat
1305158Smim8small integral membrane protein 855023061750239651Rat
61931Zfp292zinc finger protein 29255028208450362344Rat
9422186LOC103692332uncharacterized LOC10369233255034157850344008Rat
620436Cgaglycoprotein hormones, alpha polypeptide55036249150393368Rat
7518675LOC102547206uncharacterized LOC10254720655036802850369928Rat
9457060LOC103692333small ubiquitin-related modifier 2 pseudogene55037609750377541Rat
11452394LOC108350953small ubiquitin-related modifier 2 pseudogene55037700150377697Rat
1586081LOC366349similar to 60S ribosomal protein L23a55040190450402525Rat
1560696Mob3bMOB kinase activator 3B55043744450638136Rat
1584099LOC688867similar to cisplatin resistance-associated overexpressed protein55055157350553904Rat
1309045Ifnkinterferon kappa55063121750634142Rat
7641478LOC10254923060S ribosomal protein L10a-like55063877150640204Rat
1359108RGD1359108similar to RIKEN cDNA 3110043O2155066644450691523Rat
11372221LOC10835095460S ribosomal protein L7a pseudogene55070941650710670Rat
11477254LOC108351087circumsporozoite protein-like55073171750732388Rat
7573312LOC102557269uncharacterized LOC10255726955098313150990880Rat
9473666LOC103692334small ubiquitin-related modifier 2 pseudogene55114460051145554Rat
7657583LOC102549876uncharacterized LOC10254987655118820151191327Rat
1586797Capns1-ps1calpain, small subunit 1, pseudogene 155138336851386380Rat
1310773Lingo2leucine rich repeat and Ig domain containing 255146636751638161Rat
2323083LOC100359962mitochondrial malate dehydrogenase-like55179752451799451Rat
7658476LOC102550493uncharacterized LOC10255049355185448051946472Rat
2325412Mir876microRNA 87655246164652461724Rat
2325356Mir873microRNA 87355248107652481152Rat
6495515LOC100910962zinc finger protein 37-like55264264452650286Rat
11363529LOC108348077major urinary protein-like55265139952655623Rat
1593272LOC298111alpha2u globulin55276550052767592Rat
1593776LOC685482similar to alpha2u globulin55276592352767592Rat
1592194LOC690770similar to heterogeneous nuclear ribonucleoprotein K55310643253111029Rat
2322670LOC100360179zinc finger, FYVE domain containing 20-like55344382953446215Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
34212D5Mgh518154440427644404451Ratregion
34387D5Mgh1719951440890314409113Ratregion
34469D5Mgh311952481550524815611Ratregion
34469D5Mgh311952475588624755992Ratregion
34481D5Mgh2812352495630424956444Ratregion
34599D5Mit1823651706231217062543Ratregion
34639D5Pas131052625176726252076Ratregion
36113D5Rat116353522543235225593Ratregion
36255D5Rat18913252396144723961579Ratregion
36279D5Rat415254872203848722188Ratregion
36618D5Rat216853856215838562313Ratregion
34837D5Rat5217454869846148698650Ratregion
35076D5Rat614855157882751578971Ratregion
35767D5Rat515855073077750730952Ratregion
39722D5Rat13423055141867151418886Ratregion
39756D5Rat12320751859211318592319Ratregion
39780D5Rat12719852671293226713119Ratregion
40414D5Rat20712552086660020866724Ratregion
40562D5Rat187172586322858632460Ratregion
40716D5Rat12411651884791318848016Ratregion
38548D5Rat8224054474682644747071Ratregion
38704D5Rat20624951663496516635349Ratregion
39992D5Rat21024952363994323640181Ratregion
40250D5Rat12523451726294617263178Ratregion
40330D5Rat13014553192612231926260Ratregion
39160D5Rat7323752495621224956444Ratregion
39186D5Rat7024953578875635789020Ratregion
39338D5Rat20922952248178622482014Ratregion
39338D5Rat20922952248161022482014Ratregion
42190D5Arb1823452993098029931241Ratregion
42312D5Rat248239586432548643450Ratregion
42313D5Rat24920152118181521182015Ratregion
42314D5Rat25023853420839534208616Ratregion
42315D5Rat25120453737435937374562Ratregion
42316D5Rat25320154575219745752402Ratregion
42316D5Rat25320154557905345579258Ratregion
42317D5Rat25220154477528744775488Ratregion
42318D5Rat25414355119751751197657Ratregion
42318D5Rat25414355048653950486679Ratregion
42731D5Rat215124590602249060321Ratregion
42734D5Rat21810052321918623219304Ratregion
42737D5Rat19122553616008336160308Ratregion
42738D5Rat22020253399753833997713Ratregion
41350D5Rat13215254077791840778067Ratregion
41480D5Rat12827852465864824658888Ratregion
41480D5Rat12827852465850724658888Ratregion
40800D5Rat12620952419700124197209Ratregion
41072D5Rat13320354865272448652920Ratregion
41076D5Rat121200595148429515035Ratregion
41728D5Rat18820451802863418028835Ratregion
41912D5Rat22120153428806434288280Ratregion
43871D16Got27149591529679153115Ratregion
43872D5Rat18612751222299412223122Ratregion
43874D5Got11212652346429923464424Ratregion
43875D5Got10913052313281623132945Ratregion
43876D5Got13518652133331521333500Ratregion
43891D6Got3620253626050036260701Ratregion
60623D8Got2521552865132328651537Ratregion
60493D5Got7218753934423039344416Ratregion
60752D5Rat24724351391242213912657Ratregion
69542D5Uwm821851265196712652150Ratregion
69543D5Uwm913951623448516234623Ratregion
69544D5Uwm1012151487006514870177Ratregion
69546D5Uwm1215752737308427373251Ratregion
69548D5Uwm1320253837256338372806Ratregion
69551D5Uwm1429654784213147842422Ratregion
69553D5Uwm5119753385780533857997Ratregion
69572D5Uwm5814951467252914672671Ratregion
625790D5Got11119152328203823282228Ratregion
66416D5Mco529052367060923670912Ratregion
66441D5Uia1125655168542251685677Ratregion
66655D5Mco2116155214158052141742Ratregion
66658D5Mco2327151950635619506630Ratregion
66662D5Mco2532653438110034381416Ratregion
66706D5Mco3620051006064810060826Ratregion
66707D5Mco3742352160823721608664Ratregion
67219D5Arb2217852812273928122916Ratregion
67360D5Arb1653608477136085139Ratregion
1630208D5Got20726551369712113697385Ratregion
1630361D5Got21111952697075926970877Ratregion
1630371D5Got27411153394485133944947Ratregion
1630534D5Got26026055027681450277062Ratregion
1630875D5Wox3620953180946631809674Ratregion
1631146D5Got2799453737447737374570Ratregion
1631457D5Got28810453193308431933182Ratregion
1631662D5Got28117353349202933492201Ratregion
1632343D5Got21716253940073439400895Ratregion
1578970D10Chm5117053409395534094130Ratregion
1579025D10Chm5025053417669634176938Ratregion
1627772D5Got22413355362030853620835Ratregion
1627772D5Got22413355362030853620440Ratregion
1628062D5Got26125051441744214417689Ratregion
1628972D5Got28912953906297639063104Ratregion
1629035D5Got20321451441194714412161Ratregion
1629157D5Got21314552759093227591076Ratregion
1629653D5Wox2619451374395313744146Ratregion
1629836D5Got26511253710829937108405Ratregion
1629836D5Got26511253710111437101220Ratregion
1638832D5Got31613453543624535436347Ratregion
1638832D5Got31613453543621435436347Ratregion
1641068D5Got20515351442088814421040Ratregion
1641273D5Got32211251204160112041712Ratregion
1641312D5Got32115151642871916428869Ratregion
1641564D5Ulb215655214155852141713Ratregion
1633225D5Got20612551385986013859984Ratregion
1633468D5Got27611854895228148952398Ratregion
1633482D5Got21515853745518537455343Ratregion
1633616D5Got27518353616018136160363Ratregion
1639823D5Got32017852621176426211959Ratregion
1639986D5Wox3416751937130019371466Ratregion
1640110D5Got30814754969153849691684Ratregion
1640375D5Got21614153459681234596952Ratregion
1640560D5Got31718351663621616636396Ratregion
1640751D5Mco31923552367078623671020Ratregion
1635180D5Got28020151174594811746148Ratregion
1635221D9Got20515954699338846993541Ratregion
1635256D5Got21430053522844135228740Ratregion
1635380D5Got20412151353056713530687Ratregion
1635762D5Got22320755216738052167586Ratregion
1636323D5Got22222854843019548430422Ratregion
1636412D5Got29827553618817136188445Ratregion
1636547D5Got21918253895436538954546Ratregion
1636727D5Got28426554292968842929952Ratregion
1636727D5Got28426554292953042929952Ratregion
1638167D5Got28514652798095427981099Ratregion
1638216D5Got22015354222515542225307Ratregion
1638303D5Got21812354141282941412954Ratregion
1638319D5Got20814451586010515860248Ratregion
1633993D5Got25512654949646249496587Ratregion
1634015D5Got30129954974127849741576Ratregion
1634081D5Got29727455073067550730948Ratregion
1634340D5Wox3125651936989019370145Ratregion
1634714D5Got28314353230753632307673Ratregion
8662927rs6501630851065269910652699Ratregion
7193019Runx1t142252743851027438931Ratregion
7193066D5Mit1823651706231217062542Ratregion
7206292Pou3f273053668224236682971Ratregion
5035767PMC165443P112151936532419365444Ratregion
5035775PMC166293P146654932878149329246Ratregion
5035809PMC196070P122453668310736683330Ratregion
5038620AW55725015154803546748035617Ratregion
5035961PMC317216P177053668168936682458Ratregion
5036173RH12567627453571337935713652Ratregion
5038908RH127402207594033029403508Ratregion
5038982RH12744521951705642017056638Ratregion
7206540UniSTS:546979105952743862127439679Ratregion
7206622Pou3f253153668271736683247Ratregion
5039222RH12758219251303515313035344Ratregion
5036460Pou3f218853668279536682982Ratregion
5036673AU048828256592264569226711Ratregion
5036679AU04884729355236882552369117Ratregion
5036829AU04933724553018685730187101Ratregion
5036849AU04940619854893365548933851Ratregion
5037109SHGC-5312018552476295224763136Ratregion
5037167RH8046023852744227027442507Ratregion
5037169RH9177214251890250818902649Ratregion
5033849RH140347136594255149425649Ratregion
5033857RH14037820953961656139616769Ratregion
5033893RH14051814851451131214511454Ratregion
5033903RH14055421151664177316641983Ratregion
5031468AU04822314954161574541615893Ratregion
5034009RH14101319852862910928629306Ratregion
5034121RH14144319652656600926566204Ratregion
5034309Epha721154375796143758171Ratregion
5034444BE11817915355002103450021186Ratregion
5026468RH13232622052557626225576481Ratregion
5026582RH13276522052983878629839005Ratregion
5034540BE11928317254805286748053038Ratregion
5026892RH13393121154758811147588321Ratregion
5026892RH13393121154758789347588321Ratregion
5032207AB02122814353180920031809342Ratregion
5032357AI46752311154826414748264257Ratregion
5035146BQ20049115953367006533670224Ratregion
5026966RH13421418152257934922579529Ratregion
5027087D8S195729151890248718902777Ratregion
5027225AI1964529351587678915876881Ratregion
5029865AW53093718452964873229648915Ratregion
5032679RH13489515653384273833842893Ratregion
5027263AV00136011952844263728442755Ratregion
5032795RH13532620554084559040845794Ratregion
5035310BM38627220952966389329664101Ratregion
5030215AW53231315953161640931616567Ratregion
5024982RH12683020852169643021696637Ratregion
5024984AW5515838553961834939618433Ratregion
5027725D8S195010652743902527439130Ratregion
5030231BE11111315151706309617063246Ratregion
5033077RH13750512352169612421696246Ratregion
5025146RH12709222251844265118442872Ratregion
5030451BI28869517652417995424180129Ratregion
5030451BI28869517652339189723392072Ratregion
5033233RH13807413751644672016446856Ratregion
5028037MHAa74a4.seq195586462058646399Ratregion
5030669BE10754216554768983447689998Ratregion
5028208D1Mit296158592295469229703Ratregion
5030845BE12064218753912265639122841Ratregion
5030849BE120681209588143648814572Ratregion
5030879BE11445819453181520431815397Ratregion
5033663RH13965020455001483150015918Ratregion
5025846RH12991321353662859636628808Ratregion
5025848RH12992121753588338035883596Ratregion
5028430D2635214152956196829562108Ratregion
5031145BE11632116655028213950282304Ratregion
5052095RH9483714051664151016641647Ratregion
5055167RH14364419751220361212203808Ratregion
5051140RH13446218053181185231812031Ratregion
5055843RH14403414152169655521696695Ratregion
5055999RH14412411653819590638196021Ratregion
5056045RH14415123552968318929683423Ratregion
5051679RH9459519951374321213743410Ratregion
5053933RH14293422353364323833643460Ratregion
5056867RH14462615352450216724502319Ratregion
5052097RH9483817351664197516642147Ratregion
5054341RH143168202594129109413111Ratregion
5059520BE09719815552275734322757497Ratregion
5055081RH14359518054360375743603936Ratregion
5058556BE10203715554803995148040105Ratregion
5058608BE10218715954823287948233037Ratregion
5056267RH14428028654003039240030677Ratregion
5058822BI28467721653588068835880903Ratregion
5056637RH14449318252983955729839738Ratregion
5056965RH14468220252739603127396232Ratregion
5058120BF38663015054856781648567965Ratregion
5056821RH14460016051267890112679060Ratregion
5050016RH13381319252258011122580302Ratregion
5053179RH142499109592376889237796Ratregion
5053567RH14272311152441454924414659Ratregion
5050656RH13418219451764169017641883Ratregion
5053785RH14284916052247993222480091Ratregion
5052434AA95899318954803579748035985Ratregion
5050836RH13428619751890354418903740Ratregion
5054037RH14299410055002032250020421Ratregion
5054055RH14300414753936036039360506Ratregion
5054129RH14304712152446102424461144Ratregion
5051362AU01508411253591881635918927Ratregion
5051364AI4490169155028213450282224Ratregion
5053257RH14254412352450295724503079Ratregion
5053261RH14254614754376076543760911Ratregion
5043950RH130324207593555419355747Ratregion
5044082RH13039918052525596825256147Ratregion
5044082RH13039918052524460125244780Ratregion
5043352RH12997718153588343035883610Ratregion
5045200RH13104119852124538521245582Ratregion
5045232RH13106021554829016748290381Ratregion
5045354RH13113016652173774921737914Ratregion
5045384RH13114725054789078647891035Ratregion
5045768RH13136818453655364336553826Ratregion
5044696RH130751181593147419314921Ratregion
5044796RH13080820052887025628870455Ratregion
5048784RH13310321552274585922746073Ratregion
5046348RH13170118452833315328333333Ratregion
5044484RH13062920351489556214895764Ratregion
5044558RH130672201590471109047310Ratregion
5046460RH13176521653581939335819608Ratregion
5046512RH13179621552450062724500841Ratregion
5045180RH13103020751670055616700762Ratregion
5045954RH13147519851949926719499464Ratregion
5047712RH13248519952457710024577298Ratregion
5048918RH13318118252271026522710446Ratregion
5048920RH13318221252512079525121007Ratregion
5045272RH13108319653605636436056559Ratregion
5046622RH13185919952495439224954590Ratregion
5046716RH13191419551461854014618734Ratregion
5046734RH13192418851607971716079904Ratregion
5048028RH13266720951458470914584917Ratregion
5048266RH13280419752416521224165408Ratregion
5048266RH13280419752337744223377638Ratregion
5047108RH13213820653321383633214041Ratregion
5047160RH13216821853360868433608901Ratregion
5039562RH12777719555023087250231066Ratregion
5042194RH12929419151949825719498447Ratregion
5047380RH13229418054002295740023136Ratregion
5042418RH12942320753658599736586203Ratregion
5042770RH12963516853317454833174715Ratregion
5043052RH12980318252457818024578361Ratregion
5039710RH12786220252844252928442730Ratregion
5040866RH12852921651455939014559605Ratregion
5043498RH13005919951213281212133010Ratregion
5040128RH12810520153540337535403573Ratregion
5042556RH12950520652297953722980357Ratregion
5042784RH12964418852424006324240250Ratregion
5040942RH12857219252956364129563832Ratregion
5041474RH12887718652844141728441602Ratregion
5072486RH13687722053601757036017789Ratregion
5073986RH13775322654805268748052912Ratregion
5072262RH13674712055001701350017132Ratregion
5072322RH13678216852566627525666442Ratregion
5072432RH13684621452424033724240591Ratregion
5072506RH13688918151664381116643991Ratregion
5076342RH13912013552424268824242822Ratregion
5076996RH13949920651989311819893323Ratregion
5075524RH13864312052441975324419872Ratregion
5080560RH14165020555067149750671701Ratregion
5077142RH13958620552275439922754603Ratregion
5075984RH13891012952275541122755539Ratregion
5075998RH13891817351314346313144549Ratregion
5075066RH13837921452442152924421742Ratregion
5077450RH13976321451766457717664790Ratregion
5077712RH13991418551931300619313190Ratregion
5076594RH13926624553429572934295973Ratregion
5076718RH13933812353352571633525838Ratregion
5077338RH13969920952956318029563388Ratregion
5077374RH13971918552981408629814270Ratregion
5077860RH14000118051930553019305709Ratregion
5077392RH13973020552258025022580454Ratregion
5077540RH13981519552573221825732412Ratregion
5078424RH14033414251989311419893255Ratregion
5078432RH14034016151049315810493318Ratregion
5077694RH13990418655001922250019407Ratregion
5078594RH14043415152275439922754549Ratregion
5079976RH14131120154841621248416412Ratregion
5078046RH14011120351452835014528552Ratregion
5070780RH13470121151506017615060386Ratregion
5070874RH13475518652798683127987016Ratregion
5079218RH14080414852442098824421135Ratregion
5080252RH14147315051451199414512143Ratregion
5071068RH13486815052450317224503321Ratregion
5073320RH13736821953598419935984417Ratregion
5080438RH14157921951936041619360634Ratregion
5080464RH14159419451212910212129295Ratregion
5078658RH1404739251461775114617842Ratregion
5072864RH13709819954803574348035941Ratregion
5071672RH13521821952182885621829074Ratregion
5071818RH13530219253380707333807264Ratregion
5074170RH13786224752567086725671113Ratregion
5070892RH13476620155028234550282545Ratregion
5071000RH13482818754724408447244272Ratregion
5071174RH13493020651882797418828179Ratregion
5072110RH13665618251509122715091408Ratregion
5074414RH13800318954021160440211792Ratregion
5071506RH13512118751670591716706103Ratregion
5073692RH13758418052416434624164525Ratregion
5073692RH13758418052337657623376755Ratregion
5074756RH13820020453815783838158041Ratregion
5061824AW52717123652490585924906094Ratregion
5065108BF40587822651825663318256858Ratregion
5066642AU04823617752356361923563795Ratregion
5066720AU04819015751084977510849933Ratregion
5066964AU04804618552924501529245199Ratregion
5066986AU04803329151588121715881507Ratregion
5067124AU047949263595243799524638Ratregion
5067476AU04772126154533929345339543Ratregion
5067494AU04771020851490800914908216Ratregion
5067516AU04769714554757392347574067Ratregion
5067652AU04761617953787480537874980Ratregion
5067660AU04761216151973366719733822Ratregion
5067660AU04761216151943637619436531Ratregion
5067732AU04756910252146771221467813Ratregion
5067932AU04745021354911891249119095Ratregion
5067942AU04744423151708930717089752Ratregion
5068046AU04738013052670271026702839Ratregion
5068412AU04716128251666471416664992Ratregion
5068550AU04707811251363086413630975Ratregion
5069991RH9440617851499437714994552Ratregion
5068764AU04694610353371485933714956Ratregion
5069476AU04647328453921079439211077Ratregion
5068986AU04680021451998021019980418Ratregion
5069010AU04678321454929692649297139Ratregion
5069010AU04678321454924356649243779Ratregion
5070352AI8431919753598407035984166Ratregion
5069098AU04672618653627616036276347Ratregion
5069790AU02867612752409534124095464Ratregion
5069790AU02867612752331383823313961Ratregion
5062158BE10628222051019302610193245Ratregion
5063596BE10780820251573279815732999Ratregion
5063702BF40456411553447797334478087Ratregion
5065180BE12108716554931082749310991Ratregion
5065242BE12126316453358145533581618Ratregion
5065276BE12133916151931145719311617Ratregion
5062424BF40325520651374282913743034Ratregion
5063928BE12026515954933073549330893Ratregion
5064044BE12053216654722018047220345Ratregion
5065472BE11560616853181027931810446Ratregion
5065494BE10910115455028304650283199Ratregion
5065644BF40611619054930713549307324Ratregion
5062706BF40393918154755088747551067Ratregion
5064416BI30215016551275170612751870Ratregion
5065742BF40632721154763531247635522Ratregion
5062040BE10609015052259282822592977Ratregion
5064248BE12087118554766539747665581Ratregion
5064350BI30206516851414871614148883Ratregion
5065932BE11619221354868009848680310Ratregion
5064612BF39943716153596709135967251Ratregion
5066236PMC123076P145754932841649328872Ratregion
5061274BE11142016353712563437125796Ratregion
5063022BI30115316054780627647806435Ratregion
5061464BE10523919955055270350552901Ratregion
5063210BI30142517453580176635801939Ratregion
5063288BI30167219351537025415370446Ratregion
5066446AU04835221251707072017070931Ratregion
5061534BE10540820653668801136688216Ratregion
5086268BF41004610151950975119509851Ratregion
5087098BQ20908921552648121126481425Ratregion
5087424STS-D294955551445106614451120Ratregion
5087722Cbfa2t1h19652743941627439611Ratregion
5087743Cnr118354932894449329126Ratregion
5089781AU049360167594663809466546Ratregion
5082975BF39053417751892949218929668Ratregion
5087506PMC212738P149353607335336073528Ratregion
5089851AU04940021453737796437378177Ratregion
5083159BI27522013252566684825666979Ratregion
5088030Oprk112751374990113750027Ratregion
5088183AU04841725052031784520318094Ratregion
5089381AU04912228555314662353146902Ratregion
5088517AU04861629954966158549661882Ratregion
5087153BQ20910718351628036416280546Ratregion
5084894AI00926018951955558819555776Ratregion
5087983UniSTS:143722053072176530721945Ratregion
5085561AI23134315052183090521831054Ratregion
5088519AU04861727054840041648400685Ratregion
5088753AU04875724151894602618946266Ratregion
5088897AU04883412853482787134827998Ratregion
5081076RH14195121352247762622477838Ratregion
5081156RH14199721953814961838149836Ratregion
5085611BM39205421651697007416970289Ratregion
5090297AU04966725254777883647779087Ratregion
5089019AU04890726654756456647564830Ratregion
5082477BI27480918754982400449824190Ratregion
5085900AW53588716052166064221660801Ratregion
5082981BF39055615851304675613046913Ratregion
5086238BQ19200018153181663731816816Ratregion
5081360AA92390217752124917321249352Ratregion
5081481AA99856816652176856421768729Ratregion
5081577BE11747320554803777348037977Ratregion
5085701BM39079018253997273739972918Ratregion
5083515BF39159212251573798515738106Ratregion
5086687BE10725818152736978627369967Ratregion
5086801BE114642152587295098729660Ratregion
5081767BE11811517054806357148063744Ratregion
5081963BE11892616751461968914619855Ratregion
5081965BE11893315052734229027342439Ratregion
5507559RH68043103851330809413309131Ratregion
5504340D11S303847852695722626957703Ratregion
5504928Runx1t15252743961927439670Ratregion
5504873ha284791354273214642733058Ratregion
5505052Kat2b6853602222436022290Ratregion
5505568UniSTS:482606142254932774449329165Ratregion
5505748UniSTS:492577144853668189536683342Ratregion
5505992UniSTS:49675113152444486624444996Ratregion
5506007UniSTS:49727763854346929343469930Ratregion
5506463GDB:13175647852603395926034036Ratregion
5506553MMP16_92090953180902931809937Ratregion
5506735G4487015651775569717755852Ratregion
5506883G4720419251924816519248356Ratregion
5507101UniSTS:22453919754374141843741614Ratregion
5507181UniSTS:22501415152743879027438940Ratregion
5499527stSG60954810052874410128744200Ratregion
5500170D4Mit104052154972221550384Ratregion
5499825UniSTS:23487222352844267528442897Ratregion
5499827UniSTS:23489145755001431350014769Ratregion
5499831UniSTS:23489626155028213850282398Ratregion
5503017Fut941654003423740034652Ratregion
5500683D19S909052489743024898425Ratregion
5501722UniSTS:26699014254375757143757712Ratregion
Position Markers

Flank 1: (D5Rat187)
Rat AssemblyChrPosition (strand)Source
mRatBN7.258,948,228 - 8,948,404 (+)MAPPER
Rnor_6.058,632,285 - 8,632,460NCBI
Rnor_5.0513,440,622 - 13,440,797UniSTS
RGSC_v3.458,464,827 - 8,465,004RGD
RGSC_v3.458,464,828 - 8,465,003UniSTS
RGSC_v3.158,464,562 - 8,465,043RGD
Celera58,460,750 - 8,460,925UniSTS
SHRSP x BN Map53.55UniSTS
SHRSP x BN Map53.55RGD
FHH x ACI Map50.0RGD
Flank 2: (D5Rat3)
Rat AssemblyChrPosition (strand)Source
RGSC_v3.4540,136,821 - 40,136,992UniSTS
RGSC_v3.4540,136,669 - 40,137,122RGD
RGSC_v3.1540,137,000 - 40,137,171RGD
Celera537,727,967 - 37,728,130UniSTS
RH 3.4 Map5191.1UniSTS
RH 3.4 Map5191.1RGD
RH 2.0 Map5227.9RGD
SHRSP x BN Map520.3999RGD
FHH x ACI Map521.34RGD


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331771Rf35Renal function QTL 354.36965kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)5189432042Rat
1331756Rf34Renal function QTL 344.16275kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)5193273395Rat
70212Niddm25Non-insulin dependent diabetes mellitus QTL 253.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)51136640934Rat
2312562Pur18Proteinuria QTL 182.60.001total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)5152509833001026Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)5152509878720537Rat
8662454Vetf3Vascular elastic tissue fragility QTL 327.4artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)5166658771552720Rat
2313085Bss59Bone structure and strength QTL 592.90.0001long bone metaphysis morphology trait (VT:0000133)tibia midshaft total cross-sectional area (CMO:0001715)5325132926252076Rat
1300117Hrtrt8Heart rate QTL 83.49heart pumping trait (VT:2000009)heart rate (CMO:0000002)5325132948722188Rat
61462Niddm10Non-insulin dependent diabetes mellitus QTL 103.90.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)5452573847978104Rat
631827Alc4Alcohol consumption QTL 43.5consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)5787561118592319Rat
2293666Bmd38Bone mineral density QTL 384.4femur size trait (VT:1000369)femoral neck cortical cross-sectional area (CMO:0001702)5863228553632285Rat
7394712Emca13Estrogen-induced mammary cancer QTL 13mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)59514842103580403Rat
634305Mamtr1Mammary tumor resistance QTL 10.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)512651967117554267Rat
1641903Alcrsp3Alcohol response QTL 3response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)51328888858288888Rat
1600358Mamtr5Mammary tumor resistance QTL 5mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)51884791363847913Rat
1358353Srcrtb2Stress Responsive Cort Basal QTL 23.480.003blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)51884791376608178Rat
8552954Pigfal14Plasma insulin-like growth factor 1 level QTL 149blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)52190436366904363Rat
1549901Neudeg2Neurodegradation QTL 240nervous system integrity trait (VT:0010566)mononuclear cell count (CMO:0002119)52495621244747071Rat
1578767Stresp17Stress response QTL 174.30.01blood aldosterone amount (VT:0005346)plasma aldosterone level (CMO:0000551)52907889974078899Rat
1578776Stresp18Stress response QTL 182.9thymus mass (VT:0004954)thymus wet weight (CMO:0000855)52907889974078899Rat
6903292Stl28Serum triglyceride level QTL 282.60.0073blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)52964166174641661Rat
6903306Scl35Serum cholesterol QTL 352.60.0073blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)52964166174641661Rat
2290448Scl54Serum cholesterol level QTL 542.93blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)531926122136640934Rat
1298067Scl15Serum cholesterol level QTL 154.80.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)53440240979402409Rat
1302786Kidm8Kidney mass QTL 828.15kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)53440240979402409Rat
1598807Glom12Glomerulus QTL 122.7kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)53440240979402409Rat
1576317Eutr2Estrogen induced uterine response QTL 20.01uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)535225432108092802Rat
2316959Gluco59Glucose level QTL 594.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)535661945117554267Rat
1641922Alcrsp8Alcohol response QTL 8alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)53578875670742105Rat
1641912Alcrsp18Alcohol response QTL 18response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)535788756147487820Rat
1549845Scl44Serum cholesterol level QTL 446blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)540777918154732375Rat
1331773Scl26Serum cholesterol level QTL 263.065blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)54440427689432042Rat
1331801Rf33Renal function QTL 334.149kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)544404276134502294Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)547745646167946134Rat
1300115Hrtrt7Heart rate QTL 72.76heart pumping trait (VT:2000009)heart rate (CMO:0000002)54872203893587756Rat
1576312Emca8Estrogen-induced mammary cancer QTL 84.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)551418671147487820Rat
9589025Epfw7Epididymal fat weight QTL 720.660.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)55180442696804426Rat
7411561Bw134Body weight QTL 134240.001body mass (VT:0001259)body weight gain (CMO:0000420)55180442696804426Rat
2303615Vencon7Ventilatory control QTL 70.001respiration trait (VT:0001943)respiration rate (CMO:0000289)55330956898309568Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_cross_type intercross  
qtl_general number of animals used: 405 males and 423 females from F2 progeny 2293456
qtl_general measurement method: at 26 weeks of age femur was removed and frozen at -20oC, later slices were cut from the femoral neck and cortical area (mm2) measurements taken from pQCT slices 2293456
qtl_general allele: COP alleles affect the hip structure 2293456
qtl_general software package: MAPMAKER/EXP 2293456