Bmd38 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Bmd38 (Bone mineral density QTL 38) Rattus norvegicus

Symbol: Bmd38
Name: Bone mineral density QTL 38
RGD ID: 2293666
Trait: femur size trait   (VT:1000369)    
Measurement Type: femoral neck cortical cross-sectional area   (CMO:0001702)    
LOD Score: 4.4
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8513,731,153 - 43,590,997RGD_MAPPER_PIPELINE
mRatBN7.258,948,228 - 53,948,228RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.058,632,285 - 53,632,285RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0513,440,622 - 58,440,622RGDRnor5.0
RGSC_v3.458,464,827 - 40,137,122RGDRGSC3.4
Cross Type: intercross
Strains Crossed: COP/OlaHsd DA/OlaHsd 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View
osteoporosis  (IAGP)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Vertebrate Trait

Rat Strain
COP/OlaHsd  (IEA)
DA/OlaHsd  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Sex-specific Genetic Loci for Femoral Neck Bone Mass and Strength Identified in Inbred COP and DA Rats. Alam I, etal., J Bone Miner Res. 2008 Feb 18;.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1560793Arfgef1ARF guanine nucleotide exchange factor 1589820619076326Rat
1307055Cspp1centrosome and spindle pole associated protein 1590771619192402Rat
1310301Cops5COP9 signalosome subunit 5591922339210498Rat
40943670Rnu6-1297RNA, U6 small nuclear 1297592263019226401Rat
1585679Ppp1r42protein phosphatase 1, regulatory subunit 42592271099274461Rat
1589398Tcf24transcription factor 24592746599282876Rat
1561068Mcmdc2minichromosome maintenance domain containing 2592919679337526Rat
7721328LOC102556004uncharacterized LOC102556004592960849316974Rat
41182145Snord87small nucleolar RNA, C/D box 87592974899297573Rat
620242Sgk3serum/glucocorticoid regulated kinase family, member 3593457619472243Rat
1586147Eef1g-ps4eukaryotic translation elongation factor 1 gamma, pseudogene 4594987619503171Rat
708520Vcpip1valosin containing protein interacting protein 1595342479560889Rat
1306940Mybl1MYB proto-oncogene like 1595829059618179Rat
1561849Vxnvexin596592139684684Rat
1308863Adhfe1alcohol dehydrogenase, iron containing, 1597059669732580Rat
1311403Rrs1ribosome biogenesis regulator 1 homolog597334869735119Rat
1560290Sntg1syntrophin, gamma 15998055010794666Rat
1585836Tra2a-ps3transformer 2 alpha, pseudogene 351010664210108431Rat
40974341LOC120103228U6 spliceosomal RNA51026308710263191Rat
1584848Hnrnpa1-ps5heterogeneous nuclear ribonucleoprotein A1, pseudogene 551085591210856695Rat
1585792Kif1c-ps1kinesin family member 1C, pseudogene 151090616110908936Rat
2318732Ago2-ps1argonaute RISC catalytic component 2, pseudogene 151102054911023395Rat
41091925Hnrnpa1-ps48heterogeneous nuclear ribonucleoprotein A1, pseudogene 4851143347611439810Rat
9452275LOC103692281BET1 homolog pseudogene51167072111671079Rat
41098563Pramel7-ps2preferentially expressed antigen in melanoma-like 7, pseudogene 251183103711832415Rat
1598345Got2-ps2glutamic-oxaloacetic transaminase 2, pseudogene 251221532912216562Rat
41186497LOC120102811uncharacterized LOC12010281151224979812254124Rat
1586096Pcmtd1protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 151228471112355680Rat
2318359Tiprl-ps2TOR signaling pathway regulator, pseudogene 251245487912455761Rat
6494602Rps15-ps4ribosomal protein S15, pseudogene 451245778012458197Rat
1564095Rplp2l1ribosomal protein lateral stalk subunit P2 like 151255128712552204Rat
708566St18ST18 C2H2C-type zinc finger transcription factor51258249312914221Rat
1583530Alkal1ALK and LTK ligand 151301972913049913Rat
1309346Rb1cc1RB1-inducible coiled-coil 151316164813225560Rat
41038477LOC120103270small nucleolar RNA SNORA851321464613214785Rat
7618446LOC102549737uncharacterized LOC10254973751325044113272830Rat
41008049LOC120102812uncharacterized LOC12010281251332942413361574Rat
1305917Npbwr1neuropeptides B and W receptor 151349531913498761Rat
1586095Psmd12-ps1proteasome 26S subunit, non-ATPase 12, pseudogene 151362624113708195Rat
69426Oprk1opioid receptor, kappa 151386001613877823Rat
2318103Nhp2-ps2NHP2 ribonucleoprotein, pseudogene 251392485214056332Rat
11385100LOC108350923uncharacterized LOC10835092351430730214312194Rat
1562450Atp6v1hATPase H+ transporting V1 subunit H51437902914484703Rat
1586146Rgs20regulator of G-protein signaling 2051448443614614317Rat
41108305Hspd1-ps36heat shock protein family D (Hsp60) member 1, pseudogene 3651449799614499931Rat
1309880Tcea1transcription elongation factor A151463145414668769Rat
3025Lypla1lysophospholipase 151467960514708774Rat
1304796Mrpl15mitochondrial ribosomal protein L1551472996114741276Rat
7637993LOC102552817uncharacterized LOC10255281751497160815016234Rat
41121936LOC120102814uncharacterized LOC12010281451497213414983916Rat
1305371Sox17SRY-box transcription factor 1751501666015022228Rat
1595256Sumo4small ubiquitin-like modifier 451509932015100304Rat
1596713Rp1RP1, axonemal microtubule associated51512110415582363Rat
1565647Cyld-ps1CYLD lysine 63 deubiquitinase, pseudogene 151520207415205290Rat
41001063LOC120103384U6 spliceosomal RNA51537542215375528Rat
1549780Xkr4XK related 451589681816297733Rat
9323738LOC103695237uncharacterized LOC10369523751619288716195997Rat
41395404LOC120103059uncharacterized LOC12010305951628400116429252Rat
1309006Tmem68transmembrane protein 6851649405416524842Rat
1309953Tgs1trimethylguanosine synthase 151652486416558399Rat
1564981Scp2-ps1sterol carrier protein 2, pseudogene 151660859516609025Rat
621017LynLYN proto-oncogene, Src family tyrosine kinase51663951216755501Rat
621037Rps20ribosomal protein S2051681909516820476Rat
41164745Snord54small nucleolar RNA, C/D box 5451681994516820012Rat
41390808LOC120103319small nucleolar RNA SNORA1751684576216845890Rat
3103MosMOS proto-oncogene, serine/threonine kinase51685995716861264Rat
1597763Dnajb6-ps2DnaJ heat shock protein family (Hsp40) member B6, pseudogene 251687884816879742Rat
2321393Rpl19l4ribosomal protein L19 like 451688089916898782Rat
1305286Plag1PLAG1 zinc finger51690205716956727Rat
1592689Chchd7coiled-coil-helix-coiled-coil-helix domain containing 751695712716961682Rat
1565999Sdr16c5short chain dehydrogenase/reductase family 16C, member 551701881317043974Rat
1562060Sdr16c6short chain dehydrogenase/reductase family 16C, member 651709520817118713Rat
68946Penkproenkephalin51718379917189160Rat
6486737LOC100912510uncharacterized LOC10091251051719041417192458Rat
1563405Ptp4a2l1protein tyrosine phosphatase 4A2 like 151753051717532146Rat
41025792LOC120102816uncharacterized LOC12010281651769069117736386Rat
41052978LOC120103297small nucleolar RNA SNORA1751773591417736044Rat
1306455Bpnt23'(2'), 5'-bisphosphate nucleotidase 251777568417802570Rat
1596418Zfp652-ps1zinc finger protein 652, pseudogene 151787251017899024Rat
11453663LOC108350924uncharacterized LOC10835092451804101118060823Rat
9196141Son-ps1SON DNA and RNA binding protein, pseudogene 151846947618473456Rat
6502160Ppid-ps3peptidylprolyl isomerase D, pseudogene 351852878218540240Rat
41077767LOC120103251small nucleolar RNA SNORD7351869202518692080Rat
41384122Srsf3-ps3serine and arginine rich splicing factor 3, pseudogene 351873441318734925Rat
1563403Fam110bfamily with sequence similarity 110, member B51878936218929647Rat
40939148LOC120103320small nucleolar RNA SNORA1751883011718830241Rat
6501591Rack1-ps1receptor for activated C kinase 1, pseudogene 151898710018990913Rat
1565372Ube2cl1ubiquitin-conjugating enzyme E2C like 151899814819001967Rat
2321512Ap4s1-ps1adaptor related protein complex 4 subunit sigma 1, pseudogene 151908004319081080Rat
1308557Ubxn2bUBX domain protein 2B51930363419333181Rat
2482Cyp7a1cytochrome P450 family 7 subfamily A member 151937697919386676Rat
7640679LOC102549899uncharacterized LOC10254989951943565319454889Rat
621497Sdcbpsyndecan binding protein51947349919517188Rat
727868Nsmafneutral sphingomyelinase activation associated factor51951779519578773Rat
41347757G3bp1-ps2G3BP stress granule assembly factor 1, pseudogene 251973493319737218Rat
41046326LOC120103295small nucleolar RNA SNORA1751981437419814505Rat
1310455Toxthymocyte selection-associated high mobility group box51987499420171272Rat
41359748LOC120103345small nucleolar RNA SNORA1752095404020954161Rat
1560994Eif1-ps8eukaryotic translation initiation factor 1, pseudogene 852109854621099214Rat
1304709Car8carbonic anhydrase 852130294021402395Rat
1563301Rps16-ps4ribosomal protein S16, pseudogene 452152477121525259Rat
11375408LOC108350928uncharacterized LOC10835092852157041721574912Rat
7526543LOC102551006uncharacterized LOC10255100652158814221628171Rat
41142696LOC120103375U4 spliceosomal RNA52160213121602278Rat
68323Rab2aRAB2A, member RAS oncogene family52167601721740035Rat
1311921Chd7chromodomain helicase DNA binding protein 752181200721995358Rat
11374185LOC108350929uncharacterized LOC10835092952190195421930923Rat
7729019LOC102552020uncharacterized LOC10255202052204894322052627Rat
1586092LOC366310pseudogene for small nuclear RNA U3 (H3.9)52206501822065142Rat
11517987LOC10835108140S ribosomal protein S18 pseudogene52206558922074840Rat
2324828Psmd1-ps1proteasome 26S subunit, non-ATPase 1, pseudogene 152208005922092892Rat
9685089Lnc056long non-coding RNA 05652216267422163117Rat
11449903LOC108350931uncharacterized LOC10835093152222723222235944Rat
41350556LOC120103214U6 spliceosomal RNA52234882522348930Rat
41281883LOC120102821uncharacterized LOC12010282152237056722384103Rat
1564200Clvs1clavesin 152240838422604281Rat
1312000Asphaspartate-beta-hydroxylase52260158122814107Rat
41020171LOC120102822uncharacterized LOC12010282252265484222679142Rat
41055096LOC120102823uncharacterized LOC12010282352269711922704317Rat
9272632LOC103692300uncharacterized LOC10369230052291604222921564Rat
620104Gdf6growth differentiation factor 652299624623012567Rat
40938154LOC120102824uncharacterized LOC12010282452301332023022049Rat
2321121Mtrfr-ps1mitochondrial translation release factor in rescue, pseudogene 152378676823787484Rat
11400924Trnas-aga1transfer RNA serine (anticodon AGA) 152399628823996369Rat
1549749Cfap418cilia and flagella associated protein 41852399639524015609Rat
41188737LOC120102826uncharacterized LOC12010282652401469424029945Rat
41063004LOC120102825uncharacterized LOC12010282552402767024031806Rat
41081239LOC120102827uncharacterized LOC12010282752403682024043057Rat
7629665LOC102555924uncharacterized LOC10255592452406921124077248Rat
1312029Plekhf2pleckstrin homology and FYVE domain containing 252409107724106758Rat
11434367LOC108350932uncharacterized LOC10835093252410676124123754Rat
1586091Rpl11-ps4ribosomal protein L11, pseudogene 452413611524136752Rat
11503786LOC108351119ferritin light chain 1 pseudogene52414242024143026Rat
1309085Ndufaf6NADH:ubiquinone oxidoreductase complex assembly factor 652414771224171981Rat
631423Tp53inp1tumor protein p53 inducible nuclear protein 152425398624272250Rat
1307783Ccne2cyclin E252428507824298258Rat
1310592Ints8integrator complex subunit 852429554224344642Rat
1305828Dpy19l4dpy-19 like 452435128924410932Rat
1560481Esrp1epithelial splicing regulatory protein 152442761124482157Rat
6495230Rps23-ps1ribosomal protein S23, pseudogene 152451555924516265Rat
7747666Eno1-ps21enolase 1, pseudogene 2152453842024540101Rat
1588818Rpl24l2ribosomal protein L24 like 252454271424543178Rat
1564278Rnps1-ps5RNA binding protein with serine rich domain 1, pseudogene 552463041024632144Rat
9116417Dlgap5l1DLG associated protein 5 like 152467117324720087Rat
41314783St13-ps6ST13, Hsp70 interacting protein, pseudogene 652468005024684165Rat
1559441Cd99l4CD99 molecule like 452472267224769964Rat
9472653Dlg5l7discs large MAGUK scaffold protein 5 like 752480548324812407Rat
41101046LOC120102830uncharacterized LOC12010283052486926424872255Rat
41388173Wsb1-ps1WD repeat and SOCS box-containing 1, pseudogene 152488168824891528Rat
1559904Virmavir like m6A methyltransferase associated52496120825024660Rat
41020351LOC120103356U6atac minor spliceosomal RNA52500862725008726Rat
1306507Rad54bRAD54 homolog B52503211225104630Rat
7611658Fsbpfibrinogen silencer binding protein52505800325064276Rat
2320072Eif5-ps4eukaryotic translation initiation factor 5, pseudogene 452514896325152683Rat
7638920LOC102552309uncharacterized LOC10255230952515280525154273Rat
1307386GemGTP binding protein overexpressed in skeletal muscle52521430925225222Rat
619748Cdh17cadherin 1752526282025314884Rat
7731407LOC102552377uncharacterized LOC10255237752527333925289529Rat
620393Pdp1pyruvate dehydrogenase phosphatase catalytic subunit 152544684325455107Rat
1586167Tmem67transmembrane protein 6752553645825589378Rat
41100894LOC120102832RNA-binding protein 12B-A-like52559050025597273Rat
1307658Rbm12bRNA binding motif protein 12B52559740525610324Rat
1310681Cibar1CBY1 interacting BAR domain containing 152561399325632440Rat
1561260Triqktriple QxxK/R motif containing52639151126464422Rat
40972884LOC120102833uncharacterized LOC12010283352646198526467263Rat
41277993Trnat-agu10transfer RNA threonine (anticodon AGU) 1052693417726934249Rat
41195959Runx1t1lRUNX1 partner transcriptional co-repressor 1 like52716768927188550Rat
1305490Runx1t1RUNX1 partner transcriptional co-repressor 152718767427338070Rat
11398785LOC10835112060S ribosomal protein L17 pseudogene52746049327461058Rat
41114922LOC120103328small nucleolar RNA SNORA1752751011927510246Rat
11472967LOC10835112160S ribosomal protein L29 pseudogene52753782727538390Rat
41226688LOC120102835uncharacterized LOC12010283552755964727586169Rat
41209789LOC120103334small nucleolar RNA SNORA1752765310727653215Rat
1597419Dnaja1-ps2DnaJ heat shock protein family (Hsp40) member A1, pseudogene 252781036927811537Rat
1310846Slc26a7solute carrier family 26 member 752788440028021865Rat
1583733Lrrc69leucine rich repeat containing 6952802359128181963Rat
1310024Otud6bOTU deubiquitinase 6B52818199228214486Rat
1306225Pip4p2phosphatidylinositol-4,5-bisphosphate 4-phosphatase 252825982128307225Rat
6487307C5h8orf88similar to human chromosome 8 open reading frame 8852833016728355691Rat
708548Necab1N-terminal EF-hand calcium binding protein 152835785928578642Rat
11444056LOC108350937ferritin light chain 1 pseudogene52843074328431569Rat
41166424LOC120103363U2 spliceosomal RNA52849750128497630Rat
40956040Bex4-ps2brain expressed X-linked 4, pseudogene 252862147428684995Rat
1596128Tmem64transmembrane protein 6452869894728745384Rat
40941923LOC120102836uncharacterized LOC12010283652871884128768110Rat
41307010LOC120103144uncharacterized LOC12010314452903259729047722Rat
69340Calb1calbindin 152937562429402532Rat
41208256LOC120103326small nucleolar RNA SNORA1752940795329408081Rat
70999Decr12,4-dienoyl-CoA reductase 152941117229439054Rat
2318778Mrpl30-ps6mitochondrial ribosomal protein L30, pseudogene 652944778629448371Rat
621420Nbnnibrin52945957429494152Rat
1306323Osgin2oxidative stress induced growth inhibitor family member 252950040629519340Rat
41174538Tuba2l-ps1tubulin, alpha 2 like, pseudogene 152951187629518964Rat
1586088Gabpb2-ps1GA binding protein transcription factor subunit beta 2, pseudogene 152959621329605030Rat
1309167Ripk2receptor-interacting serine-threonine kinase 252963080629662804Rat
41355203LOC120102838uncharacterized LOC12010283852966282929715416Rat
1593555Cnga4-ps1cyclic nucleotide gated channel subunit alpha 4, pseudogene 152971705229718455Rat
1565988Bhmt-ps1betaine-homocysteine S-methyltransferase, pseudogene 153036296530390524Rat
2318973Ppp1cc-ps1protein phosphatase 1 catalytic subunit gamma, pseudogene 153045623330458067Rat
1593494Eif5-ps9eukaryotic translation initiation factor 5, pseudogene 953067638330677491Rat
40944019LOC120103219U6 spliceosomal RNA53105101031051115Rat
620199Mmp16matrix metallopeptidase 1653131228031556276Rat
41032391Trnap-agg53transfer RNA proline (anticodon AGG) 5353214375232143824Rat
41312846LOC120103244U7 small nuclear RNA53215196932152031Rat
1592300Cnbd1cyclic nucleotide binding domain containing 153223400332606765Rat
7556989Ormdl1-ps2ORMDL sphingolipid biosynthesis regulator 1, pseudogene 253263950232645632Rat
1565364Cngb3cyclic nucleotide gated channel subunit beta 353274698832995121Rat
1310178Cpne3copine 353301465833063934Rat
1563085Rmdn1regulator of microtubule dynamics 153307026733093922Rat
1311734Wwp1WW domain containing E3 ubiquitin protein ligase 153309237933185887Rat
41222336Pym1-ps15PYM homolog 1, exon junction complex associated factor, pseudogene 1553314213433146238Rat
11366942LOC10835108560S ribosomal protein L13 pseudogene53319174133201352Rat
1311633Slc7a13solute carrier family 7 member 1353327740033298186Rat
1306900Atp6v0d2ATPase H+ transporting V0 subunit D253333625733385354Rat
3915Ttpaalpha tocopherol transfer protein53349753733518936Rat
2682Gghgamma-glutamyl hydrolase53352988033552790Rat
41124986LOC120103374U4 spliceosomal RNA53356421533564342Rat
1591051Nkain3Sodium/potassium transporting ATPase interacting 353361372034310090Rat
9444073Hdac1-ps1histone deacetylase 1, pseudogene 153406494734076063Rat
1585101Casp3-ps4caspase 3, pseudogene 453455824334559081Rat
41075750LOC120103316small nucleolar RNA SNORA1753460649634606629Rat
1589948Atp5po-ps1ATP synthase peripheral stalk subunit OSCP, pseudogene 153510828035108914Rat
6495713Rps18-ps1ribosomal protein S18, pseudogene 153514547535145950Rat
41102833LOC120103292small nucleolar RNA SNORA4853517650435176637Rat
1589883Prdm13PR/SET domain 1353522081535232866Rat
41134945LOC120102842uncharacterized LOC12010284253526381335266767Rat
70905Ccnccyclin C53526682835284943Rat
1563572Tstd3thiosulfate sulfurtransferase like domain containing 353529465235304093Rat
1310976Usp45ubiquitin specific peptidase 4553531862135392090Rat
1307395PnisrPNN interacting serine and arginine rich protein53539596535422852Rat
2324520Kat2b-ps1lysine acetyltransferase 2B, pseudogene 153542640735428184Rat
2380Coq3coenzyme Q3 methyltransferase53542956735460613Rat
1562449Faxcfailed axon connections homolog, metaxin like GST domain containing53548013735539741Rat
41243557Wee2-ps1WEE2 oocyte meiosis inhibiting kinase, pseudogene 153555171635553140Rat
41222628LOC120102844uncharacterized LOC12010284453583956535843140Rat
2324327Pcnp-ps1PEST proteolytic signal containing nuclear protein, pseudogene 153584625835848205Rat
1305724Fbxl4F-box and leucine-rich repeat protein 453595580136029446Rat
40985493LOC120103329small nucleolar RNA SNORA1753599237635992505Rat
61946Pou3f2POU class 3 homeobox 253607793036083838Rat
7513176LOC102553820uncharacterized LOC10255382053608558836089407Rat
41322375LOC120102845uncharacterized LOC12010284553609136236095251Rat
1586399Nsa2-ps10NSA2 ribosome biogenesis factor, pseudogene 1053789234137897149Rat
1304693Mms22lMMS22-like, DNA repair protein53819770738313745Rat
1310364Klhl32kelch-like family member 3253832123738568453Rat
6492721LOC100911464glutathione S-transferase P-like53858666738592201Rat
735162Ndufaf4NADH:ubiquinone oxidoreductase complex assembly factor 453860516938610341Rat
9225019LOC10369524660S ribosomal protein L39-like53864218238642839Rat
1306460Gpr63G protein-coupled receptor 6353867254838727224Rat
41317448LOC120103335small nucleolar RNA SNORA1753887785038877982Rat
1307056Fhl5four and a half LIM domains 553890794138956759Rat
1309308Ufl1Ufm1-specific ligase 153896272138995134Rat
41335677LOC120103222U6 spliceosomal RNA53903012139030224Rat
41133959LOC120103304small nucleolar RNA SNORA1753928202539282156Rat
619955Fut9fucosyltransferase 953935181539565256Rat
620327Maneamannosidase, endo-alpha54019637340218540Rat
1585166Slc25a36-ps1solute carrier family 25 member 36, pseudogene 154026254740295229Rat
6490958Rps6-ps1ribosomal protein S6, pseudogene 154031268240313404Rat
41145764LOC120103388U6 spliceosomal RNA54068212540682231Rat
41006368LOC120103311U2 spliceosomal RNA54123388541233967Rat
2322518Dpy30-ps2dpy-30 histone methyltransferase complex regulatory subunit, pseudogene 254222778342228049Rat
41294829LOC120103330small nucleolar RNA SNORA1754253603042536158Rat
41358655Rpl6-ps2ribosomal protein L6, pseudogene 254259253142593424Rat
1584049Arl6-ps1ADP-ribosylation factor like GTPase 6, pseudogene 154284114642841746Rat
70957Epha7Eph receptor A754297535343128703Rat
41262738LOC120103208U6 spliceosomal RNA54304813943048245Rat
41256844LOC120102846uncharacterized LOC12010284654308424543103773Rat
1562265Rps12l5ribosomal protein S12 like 554361252843612958Rat
41151486LOC120103355U2 spliceosomal RNA54409051344090680Rat
41394701LOC120102847uncharacterized LOC12010284754485879044922780Rat
9283972LOC103692326uncharacterized LOC10369232654599237845995040Rat
41149442LOC120102848uncharacterized LOC12010284854604083146066269Rat
11388087LOC108350944uncharacterized LOC10835094454631252546332473Rat
1309438Map3k7mitogen activated protein kinase kinase kinase 754635697346415597Rat
41237335LOC120103146uncharacterized LOC12010314654643085646432860Rat
41352216LOC120102849uncharacterized LOC12010284954659689946619460Rat
1562865Bach2BTB domain and CNC homolog 254663233846982676Rat
1309630Gja10gap junction protein, alpha 1054699105147002902Rat
41044339LOC120102851uncharacterized LOC12010285154699298847009537Rat
1305771Casp8ap2caspase 8 associated protein 254701450147052276Rat
1306394Mdn1midasin AAA ATPase 154705543547190426Rat
1583731Ankrd6ankyrin repeat domain 654719798147343183Rat
1597334Lyrm2LYR motif containing 254719819247200470Rat
9434881Ggact-ps3gamma-glutamylamine cyclotransferase, pseudogene 354734324847355132Rat
1310007RragdRas-related GTP binding D54737390247409369Rat
11389431LOC108350947uncharacterized LOC10835094754741423947422384Rat
1305067Ube2j1ubiquitin-conjugating enzyme E2, J154742247647441476Rat
7504318Rpp38-ps1ribonuclease P/MRP subunit p38, pseudogene 154744411947445294Rat
61902Gabrr2gamma-aminobutyric acid type A receptor subunit rho 254744528047489929Rat
41016461LOC120102852uncharacterized LOC12010285254746852847472049Rat
7651324LOC102555980uncharacterized LOC10255598054749277147502403Rat
61900Gabrr1gamma-aminobutyric acid type A receptor subunit rho 154752415147561228Rat
41069886LOC120103194U6 spliceosomal RNA54755397647554081Rat
1307853Pm20d2peptidase M20 domain containing 254756605947586334Rat
1561162Srsf12serine and arginine rich splicing factor 1254760652647631509Rat
628753Pnrc1proline-rich nuclear receptor coactivator 154764707047657832Rat
11360528LOC108350948uncharacterized LOC10835094854769506447706817Rat
1311410RngttRNA guanylyltransferase and 5'-phosphatase54770692947913297Rat
9435428LOC103692329eukaryotic initiation factor 4A-I pseudogene54775341147754665Rat
11398296LOC108350949uncharacterized LOC10835094954783364147845926Rat
11439912LOC108350950uncharacterized LOC10835095054827279048371017Rat
1586082Bnip2-ps1BCL2 interacting protein 2, pseudogene 154827942748281466Rat
41248460LOC120102853uncharacterized LOC12010285354837353548403687Rat
2369Cnr1cannabinoid receptor 154840854348436099Rat
41192036LOC120103344U2 spliceosomal RNA54842749848427636Rat
9082336LOC103692331uncharacterized LOC10369233154845049948520234Rat
1560284Spaca1sperm acrosome associated 154852540648540676Rat
41313046LOC120103226U6 spliceosomal RNA54858804548588141Rat
1594697Set-ps17Set nuclear proto-oncogene, pseudogene 1754889456548895728Rat
6499463Rps27a-ps32ribosomal protein S27a, pseudogene 3254891664348917100Rat
1594682Csgalnact2-ps1chondroitin sulfate N-acetylgalactosaminyltransferase 2, pseudogene 154892507248927897Rat
11436894LOC108350951uncharacterized LOC10835095154906192649094913Rat
11505979LOC108350952uncharacterized LOC10835095254906238049063472Rat
40976841Trnav-aac27transfer RNA valine (anticodon AAC) 2754908089349080965Rat
40933816Trnav-aactransfer RNA valine (anticodon AAC)54908089349080965Rat
1307791Akirin2akirin 254910823149122566Rat
1308457Orc3origin recognition complex, subunit 354912375849181552Rat
1305419Rars2arginyl-tRNA synthetase 2, mitochondrial54918151749238664Rat
1311359Slc35a1solute carrier family 35 member A154922559949248382Rat
1310641Cfap206cilia and flagella associated protein 20654925439949299145Rat
1563056C5h6orf163similar to human chromosome 6 open reading frame 16354931678449329164Rat
1305158Smim8small integral membrane protein 854933661749345625Rat
41271580LOC120103296small nucleolar RNA SNORA1754935856049358689Rat
41078263LOC120103367small nucleolar RNA U354937190549372024Rat
61931Zfp292zinc finger protein 29254938417749468177Rat
11452394LOC108350953small ubiquitin-related modifier 2 pseudogene54948279049483777Rat
620436Cgaglycoprotein hormones, alpha polypeptide54948691549499192Rat
1586081Rpl23a-ps17ribosomal protein L23a, pseudogene 1754950771649508319Rat
41270715Ubr7-ps1ubiquitin protein ligase E3 component n-recognin 7, pseudogene 154951026449512757Rat
1560696Mob3bMOB kinase activator 3B54954625449737934Rat
7657583LOC102549876uncharacterized LOC10254987654958355049587920Rat
1584099Luc7l3-ps2LUC7-like 3 pre-mRNA splicing factor, pseudogene 254965348749655419Rat
1309045Ifnkinterferon kappa54973207349734281Rat
7641478Rpl10a-ps2ribosomal protein L10A, pseudogene 254973891149739989Rat
41194781LOC120103371U4 spliceosomal RNA54974815649748295Rat
1359108RGD1359108similar to RIKEN cDNA 3110043O2154976634049791434Rat
1310773Lingo2leucine rich repeat and Ig domain containing 255037074451687252Rat
41316018LOC120103215U6 spliceosomal RNA55046074850460853Rat
2325412Mir876microRNA 87655133719151337269Rat
2325356Mir873microRNA 87355135691951356995Rat
1592194Hnrnpk-ps6heterogeneous nuclear ribonucleoprotein K, pseudogene 655181298851817585Rat
2322670Rbsn5l-ps1rabenosyn-5 like, pseudogene 155279522552797778Rat
41389895Tuba1a-ps5tubulin, alpha 1A, pseudogene 555290789152911653Rat
1586080Ldha-ps4lactate dehydrogenase A, pseudogene 455313501053136103Rat
1591027Hspa8-ps13heat shock protein family A (Hsp70) member 8, pseudogene 1355316325753165307Rat
11457499Hnrnpa1-ps31heterogeneous nuclear ribonucleoprotein A1, pseudogene 3155365434253655308Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
34212D5Mgh517654372665643726832Ratregion
34387D5Mgh1721151452922514529436Ratregion
34469D5Mgh311952458344324583550Ratregion
34469D5Mgh311952458344324583550Ratregion
34469D5Mgh311952459887824598989Ratregion
34469D5Mgh311952459887824598989Ratregion
34481D5Mgh2814252483880224838943Ratregion
34599D5Mit1823251718969817189930Ratregion
34639D5Pas131052614166926141981Ratregion
36113D5Rat116253473011634730278Ratregion
36255D5Rat18913352381251823812651Ratregion
36279D5Rat415154786906247869213Ratregion
36618D5Rat216853793984237939998Ratregion
34837D5Rat5219054784548347845673Ratregion
35076D5Rat614555045536850455513Ratregion
35767D5Rat517654983094949831125Ratregion
39722D5Rat13421655032855150328767Ratregion
39756D5Rat12320751861599218616199Ratregion
39780D5Rat12718852660778426607972Ratregion
40414D5Rat20712552093858720938712Ratregion
40562D5Rat187176589482288948404Ratregion
40716D5Rat12410451887394718874051Ratregion
38548D5Rat8224654404503444045280Ratregion
38746D5Rat11719655327483853275044Ratregion
39992D5Rat21024952351305623513295Ratregion
40250D5Rat12523351739773617397969Ratregion
40330D5Rat13013953166378931663928Ratregion
39160D5Rat7323752483871024838943Ratregion
39186D5Rat7026553518915335189418Ratregion
39338D5Rat20922952250972222510074Ratregion
39338D5Rat20922952250984722510074Ratregion
42190D5Arb1826252972406229724324Ratregion
42312D5Rat248239589591978959394Ratregion
42313D5Rat24920152123768721237888Ratregion
42314D5Rat25022253370151833701740Ratregion
42315D5Rat25120453675380236754006Ratregion
42316D5Rat25320654492654444926750Ratregion
42317D5Rat25220254406941944069621Ratregion
42318D5Rat25414154959378349593924Ratregion
42731D5Rat21598593596939359791Ratregion
42734D5Rat21810052316678023166901Ratregion
42737D5Rat19122553556320335563429Ratregion
42738D5Rat22017653348711933487295Ratregion
41350D5Rat13215054012830740128459Ratregion
41480D5Rat12824152450880624509116Ratregion
41480D5Rat12824152450887524509116Ratregion
40800D5Rat12620952404790024048109Ratregion
41072D5Rat13320354779785647798053Ratregion
41076D5Rat121194598232669823460Ratregion
41728D5Rat18820251817359018173792Ratregion
43232D1Got6813855274058152742270Ratregion
44552D9Wox21136598842169884268Ratregion
43871D16Got27149594531439453292Ratregion
43872D5Rat18612751237395512374084Ratregion
43874D5Got11212652333204623332172Ratregion
43875D5Got10913052307306223073192Ratregion
43876D5Got13518752138987621390062Ratregion
43891D6Got3620253566775035667952Ratregion
60623D8Got2521552849399828494213Ratregion
60493D5Got7218753869621938696406Ratregion
60752D5Rat24723651402600914026245Ratregion
60523D6Got19612655343686153436987Ratregion
69542D5Uwm818451278975112789935Ratregion
69543D5Uwm913951635002416350163Ratregion
69544D5Uwm1011351499583414995947Ratregion
69546D5Uwm1215752726873627268904Ratregion
69548D5Uwm1320253725264437252890Ratregion
69551D5Uwm1429254700298247003274Ratregion
69553D5Uwm5119353335046833350661Ratregion
69572D5Uwm5814351479387814794021Ratregion
625790D5Got11119152323022623230415Ratregion
66416D5Mco530452354577523546079Ratregion
66441D5Uia1125655056113550561391Ratregion
66655D5Mco2116355101540851015571Ratregion
66658D5Mco2327551952503919525314Ratregion
66662D5Mco2531753387800433878321Ratregion
66706D5Mco3620051037271110372890Ratregion
66707D5Mco3742852165449021654918Ratregion
67219D5Arb2217852801325928013437Ratregion
67360D5Arb1653548860835488977Ratregion
1630208D5Got20726551381391613814181Ratregion
1630361D5Got21111952686519226865311Ratregion
1630371D5Got2749753343667833436775Ratregion
1630534D5Got26024954938262149382870Ratregion
1630875D5Wox3620953154736731547578Ratregion
1631146D5Got2799453675392036754014Ratregion
1631457D5Got2889953167064431670743Ratregion
1631662D5Got28117353298018732980360Ratregion
1632343D5Got21716253875440738754569Ratregion
1578970D10Chm5117653358383633584012Ratregion
1579025D10Chm5024353366817233668415Ratregion
1627772D5Got22413355211921552119348Ratregion
1627772D5Got22413355211921552119669Ratregion
1627772D5Got22413355211927452119348Ratregion
1628062D5Got26124851453776414538012Ratregion
1628972D5Got28912953841574038415871Ratregion
1629035D5Got20321551453226914532484Ratregion
1629157D5Got21314552748649727486644Ratregion
1629653D5Wox2619451386131313861507Ratregion
1629836D5Got26510753648516436485271Ratregion
1638832D5Got31613453491089434911028Ratregion
1638832D5Got31613453491092534911028Ratregion
1641068D5Got20515351454121014541363Ratregion
1641273D5Got32211251219114212191254Ratregion
1641312D5Got32115151654023616540387Ratregion
1641564D5Ulb215655101538651015542Ratregion
1633225D5Got20612551396962113969746Ratregion
1633468D5Got27611854807905548079173Ratregion
1633482D5Got21515853683371036833869Ratregion
1633616D5Got27518353556330135563484Ratregion
1639986D5Wox3416751938954419389711Ratregion
1640110D5Got30814754879375848793905Ratregion
1640375D5Got21614153409119634091337Ratregion
1640560D5Got31718151674906616749249Ratregion
1640751D5Mco31923552354595223546187Ratregion
1635180D5Got28020151187609311876294Ratregion
1635221D9Got20515454616165546161811Ratregion
1635256D5Got21430053473312534733425Ratregion
1635380D5Got20412151364416513644286Ratregion
1635762D5Got22320755104091051041117Ratregion
1636323D5Got22222854757971947579947Ratregion
1636412D5Got29827553559128735591566Ratregion
1636547D5Got21918253830759438307778Ratregion
1636727D5Got28426554229729842297686Ratregion
1636727D5Got28426554229742142297686Ratregion
1638167D5Got28514652787870427878850Ratregion
1638216D5Got22015354156573941565892Ratregion
1638319D5Got20814451602944716029591Ratregion
1633993D5Got25512654859909648599222Ratregion
1634015D5Got30129954884756448847863Ratregion
1634081D5Got29727454983084749831121Ratregion
1634340D5Wox3125651938813419388390Ratregion
1634531D3Got2729252491974524919836Ratregion
1634714D5Got28314353196981631969954Ratregion
8662927rs6501630851089811310898113Ratregion
7193019Runx1t142252733408227334504Ratregion
7193066D5Mit1823151718969817189929Ratregion
7206292Pou3f273053608272336083453Ratregion
5035767PMC165443P112151938356819383689Ratregion
5035775PMC166293P146654842977048430236Ratregion
5035809PMC196070P122453608358836083812Ratregion
5038620AW55725015154718574447185895Ratregion
5035961PMC317216P177053608217036082940Ratregion
5036173RH12567627453510827135108545Ratregion
5038908RH127402207597060739706280Ratregion
5038982RH12744521951718380617184025Ratregion
7206540UniSTS:546979105952733419327335253Ratregion
7206622Pou3f253153608319836083729Ratregion
5039222RH12758219251316288213163074Ratregion
5036460Pou3f218853608327636083464Ratregion
5036673AU048828256595295209529776Ratregion
5036679AU04884729355124402851244321Ratregion
5036829AU04933724552993213229932377Ratregion
5036849AU04940619754806043148060628Ratregion
5037109SHGC-5312018552463091124631096Ratregion
5037167RH8046023852733784327338081Ratregion
5037169RH9177214251892833618928478Ratregion
5035566SON9851846946018469551Ratregion
5033849RH140347136597282889728424Ratregion
5033857RH14037820953896205638962265Ratregion
5033893RH14051814851463158214631725Ratregion
5033903RH14055421151675462516754836Ratregion
5028589AI50464211655302830053028416Ratregion
5031468AU04822314954096515940965308Ratregion
5034009RH14101319852847366028473859Ratregion
5034009RH14101319852847366028473859Ratregion
5034121RH14144319652646405926464255Ratregion
5034309Epha721154312546543125676Ratregion
5034444BE11817915354912706349127216Ratregion
5026468RH13232622052544686625447086Ratregion
5026582RH13276522052963087829631098Ratregion
5034540BE11928317254720312847203300Ratregion
5026892RH13393121154675880946759116Ratregion
5026892RH13393121154675890546759116Ratregion
5032207AB02122814353154710131547244Ratregion
5032357AI46752311154741238047412491Ratregion
5035146BQ20049116053315944233159602Ratregion
5026966RH13421418152260323822603419Ratregion
5027087D8S195729151892831518928606Ratregion
5027225AI1964529351604613116046224Ratregion
5029865AW53093718452948600629486190Ratregion
5032679RH13489515653333540333335559Ratregion
5027263AV00136011952830693728307056Ratregion
5032795RH13532620554019709940197304Ratregion
5035310BM38627220952950116729501376Ratregion
5030215AW53231315953136060031360759Ratregion
5024982RH12683020852173974321739951Ratregion
5024984AW5515838553896384438963929Ratregion
5027725D8S195010652733459727334703Ratregion
5030231BE11111315151719048217190633Ratregion
5033077RH13750512352173943721739560Ratregion
5025146RH12709222251846952118469743Ratregion
5025146RH12709222251846952118469743Ratregion
5030451BI28869517652402980824029984Ratregion
5033233RH13807413751655823716558374Ratregion
5028037MHAa74a4.seq195589621528962347Ratregion
5030669BE10754216554686020146860366Ratregion
5028208D1Mit296158595326129532770Ratregion
5030845BE12064218653847622538476411Ratregion
5030849BE120681209591300579130266Ratregion
5030879BE11445819453155310731553301Ratregion
5033663RH13965020454912085949121947Ratregion
5025846RH12991321353602912136029334Ratregion
5025848RH12992121753528459035284807Ratregion
5028430D2635214152939924629399387Ratregion
5031145BE11632116654938794749388113Ratregion
5052095RH9483713851675436216754500Ratregion
5055167RH14364419751235485212355049Ratregion
5051140RH13446218053154975531549935Ratregion
5055843RH14403414152173986821740009Ratregion
5055999RH14412411653742990837430024Ratregion
5056045RH14415123552952046329520698Ratregion
5051679RH9459519951386057213860771Ratregion
5053933RH14293422353313259833132821Ratregion
5056867RH14462615352435299224353145Ratregion
5052097RH9483817351675482716755000Ratregion
5054341RH143168202597156829715884Ratregion
5059520BE09719815552277206322772218Ratregion
5055081RH14359518054297633142976511Ratregion
5058556BE10203715554719022847190383Ratregion
5058608BE10218715954738178447381943Ratregion
5056267RH14428028653935928539359571Ratregion
5058822BI28467721653528189835282114Ratregion
5056637RH14449318252963164929631831Ratregion
5056965RH14468220252729158627291788Ratregion
5058120BF38663015054771340447713554Ratregion
5056821RH14460016051281734012817500Ratregion
5050016RH13381319252260400022604192Ratregion
5053179RH142499109595407549540863Ratregion
5053567RH14272311152426562724265738Ratregion
5050656RH13418219451778053117780725Ratregion
5053785RH14284916052250816922508329Ratregion
5052434AA95899318954718607447186263Ratregion
5050836RH13428619751892937218929569Ratregion
5054037RH14299410054912635149126451Ratregion
5054055RH14300414753871339638713543Ratregion
5054129RH14304712152431214024312261Ratregion
5051148RH13446720653700917437009380Ratregion
5051362AU01508411253532066535320777Ratregion
5051364AI4490169154938794249388033Ratregion
5053257RH14254412352435378224353905Ratregion
5053261RH14254614754312826943128416Ratregion
5043950RH130324207596592639659470Ratregion
5044082RH13039918052559691725597097Ratregion
5043352RH12997718153528464035284821Ratregion
5045200RH13104119852130174521301943Ratregion
5045232RH13106021554743894347439158Ratregion
5045354RH13113016652178077221780938Ratregion
5045384RH13114725054705192047052170Ratregion
5045768RH13136818453595437935954563Ratregion
5044696RH130751181596178119617992Ratregion
5044796RH13080820052871843928718639Ratregion
5048784RH13310321552276055522760770Ratregion
5046348RH13170118452819745628197637Ratregion
5044484RH13062920351502188215022085Ratregion
5044558RH130672201593459819346182Ratregion
5046460RH13176521653522084435221060Ratregion
5046512RH13179621552435145224351667Ratregion
5045180RH13103020751681381616814023Ratregion
5045954RH13147519851951795019518148Ratregion
5047712RH13248519952442772224427921Ratregion
5048918RH13318118252272493222725114Ratregion
5045272RH13108319653546031235460508Ratregion
5046622RH13185919952483689024837089Ratregion
5046716RH13191419551473885014739045Ratregion
5046734RH13192418851606835016068538Ratregion
5048028RH13266720951470498414705193Ratregion
5048266RH13280419752401535324015550Ratregion
5047160RH13216821853309804133098259Ratregion
5039562RH12777719554933687549337070Ratregion
5042194RH12929419151951694019517131Ratregion
5047380RH13229418053935185639352036Ratregion
5042418RH12942320753598652235986729Ratregion
5043052RH12980318252442880224428984Ratregion
5039710RH12786220252830682928307031Ratregion
5040866RH12852921651467966514679881Ratregion
5043498RH13005919951228486512285064Ratregion
5040128RH12810520153487805234878251Ratregion
5042556RH12950582152292063122921452Ratregion
5042784RH12964418852409089824091086Ratregion
5040942RH12857219252940091929401111Ratregion
5041474RH12887718652830571728305903Ratregion
5072486RH13687722053542246935422689Ratregion
5073986RH13775322654720294847203174Ratregion
5072262RH13674712054912304149123161Ratregion
5072322RH13678216852553659425536762Ratregion
5072432RH13684625552409117224091427Ratregion
5072506RH13688918151675666016756841Ratregion
5076342RH13912013552409352324093658Ratregion
5076996RH13949920651987541319875619Ratregion
5075524RH13864312052427083224270952Ratregion
5080560RH14165020554977137149771576Ratregion
5077142RH13958620552276909522769300Ratregion
5075984RH13891012952277010722770236Ratregion
5075998RH13891817351327157713272664Ratregion
5075066RH13837921452427260524272819Ratregion
5077450RH13976321451780341917803633Ratregion
5077712RH13991418551933129119331476Ratregion
5076594RH13926624553379142133791666Ratregion
5076718RH13933812453301506633015189Ratregion
5077338RH13969920952940045829400667Ratregion
5077860RH14000118051932381519323995Ratregion
5077392RH13973020552260413922604344Ratregion
5077540RH13981519552561375325613948Ratregion
5078424RH14033414251987540919875551Ratregion
5078432RH14034016151079096110791122Ratregion
5079854RH14124118051642937116429453Ratregion
5079854RH14124118051807330918073391Ratregion
5079854RH14124118053461769034617772Ratregion
5077694RH13990418654912525149125437Ratregion
5078594RH14043415152276909522769246Ratregion
5079976RH14131120154756627047566471Ratregion
5078046RH14011120351464862114648824Ratregion
5070780RH13470121151517583815176049Ratregion
5070874RH13475518652788457427884760Ratregion
5079218RH14080414852427206424272212Ratregion
5080252RH14147315051463226414632414Ratregion
5080252RH14147315051463226414632414Ratregion
5071068RH13486815052435399724354147Ratregion
5073320RH13736821953538909435389313Ratregion
5073320RH13736821953538909435389313Ratregion
5080438RH14157921951937866019378879Ratregion
5080464RH14159419451228139912281593Ratregion
5078658RH1404739251473806114738153Ratregion
5072864RH13709819954718602047186219Ratregion
5071672RH13521821952187184721872066Ratregion
5071818RH13530219253329973233299924Ratregion
5074170RH13786224752554118625541433Ratregion
5070892RH13476620154938815349388354Ratregion
5071000RH13482818954641526446415453Ratregion
5072110RH13665618251520593215206114Ratregion
5072110RH13665618251520593215206114Ratregion
5074414RH13800318953953867939538868Ratregion
5071506RH13512118751681917716819364Ratregion
5073692RH13758418052401448724014667Ratregion
5074756RH13820020453746788837468092Ratregion
5061824AW52717123652476961624769852Ratregion
5065108BF40587822651826690918267135Ratregion
5066642AU04823617752343688623437063Ratregion
5066720AU04819015751109859511098756Ratregion
5066986AU04803329151605032816050619Ratregion
5067124AU047949263598356469835906Ratregion
5067476AU04772125154463578244636035Ratregion
5067494AU04771020851503440915034617Ratregion
5067516AU04769714554674493246745077Ratregion
5067652AU04761617953775332237753498Ratregion
5067660AU04761215651945462119454777Ratregion
5067732AU04756910252152053421520636Ratregion
5067932AU04745021354825077148250955Ratregion
5067942AU04744444651721760817218054Ratregion
5068046AU04738013052659820426598334Ratregion
5068412AU04716127951677797716778256Ratregion
5068550AU04707811251374764613747758Ratregion
5069991RH9440617851511031815110494Ratregion
5068764AU04694610353320751133207609Ratregion
5069476AU04647328453856403538564319Ratregion
5068986AU04680020951996237219962581Ratregion
5069010AU04678321454834445248344666Ratregion
5070352AI8431919753538896535389062Ratregion
5070352AI8431919753538896535389062Ratregion
5069098AU04672618853568341135683599Ratregion
5069790AU02867612752395174623951870Ratregion
5062158BE10628222051050382310504043Ratregion
5063596BE10780820251629596216296164Ratregion
5063702BF40456411553397389033974005Ratregion
5065180BE12108716554841181648411981Ratregion
5065242BE12126316453307081333070977Ratregion
5065276BE12133916151932974219329903Ratregion
5062424BF40325520651386018913860395Ratregion
5063928BE12026515954843172448431883Ratregion
5064044BE12053216654639135946391525Ratregion
5065472BE11560616853154818231548350Ratregion
5065494BE10910115454938885449389008Ratregion
5065644BF40611619054840804248408232Ratregion
5062706BF40393918154672189346722074Ratregion
5064416BI30215016551288925012889415Ratregion
5065742BF40632721154680636546806576Ratregion
5062040BE10609015052261660622616756Ratregion
5064248BE12087118554683645146836636Ratregion
5064350BI30206516851426690914267077Ratregion
5065932BE11619221354782634147826554Ratregion
5064612BF39943716153537196735372128Ratregion
5066236PMC123076P145754842940548429862Ratregion
5061274BE11142016353650291136503074Ratregion
5063022BI30115316054697698646977146Ratregion
5061464BE10523919954965420449654403Ratregion
5063210BI30142517453520216435202338Ratregion
5063288BI30167219351548902215489215Ratregion
5066446AU04835221251719810617198318Ratregion
5061534BE10540820653608848636088692Ratregion
5086268BF41004610151952843419528535Ratregion
5087098BQ20908921552637680726377022Ratregion
5087424STS-D294955551457139014571445Ratregion
5087722Cbfa2t1h19552733498927335185Ratregion
5087743Cnr118354842993348430116Ratregion
5089781AU049360167597725989772767Ratregion
5082975BF39053417751895532018955497Ratregion
5087506PMC212738P149353547718935477365Ratregion
5089851AU04940021453675697036757184Ratregion
5083159BI27522013252553716725537299Ratregion
5088030Oprk112751386726113867388Ratregion
5088183AU04841725052038911420389364Ratregion
5089381AU04912228055185349851853780Ratregion
5088517AU04861629854876595048766250Ratregion
5087153BQ20910718351639144716391630Ratregion
5084894AI00926018951957396819574157Ratregion
5087983UniSTS:143722053045590230456083Ratregion
5085561AI23134315052187389621874046Ratregion
5088519AU04861727054755047347550743Ratregion
5088753AU04875724151897185518972096Ratregion
5088897AU04883412853432437934324507Ratregion
5081076RH14195121352250586122506074Ratregion
5081156RH14199721953747585437476073Ratregion
5085611BM39205421651709276017092976Ratregion
5090297AU04966725254694954246949794Ratregion
5089019AU04890726554673557446735839Ratregion
5082477BI27480918754892811148928298Ratregion
5082477BI27480918754892811148928298Ratregion
5085900AW53588716052170395221704112Ratregion
5082981BF39055615851317448513174643Ratregion
5086238BQ19200018053155454131554721Ratregion
5081360AA92390218052130553321305713Ratregion
5081481AA99856816652181154321811709Ratregion
5081577BE11747320554718805047188255Ratregion
5085701BM39079018253930125339301435Ratregion
5083515BF39159212251629085516290977Ratregion
5086687BE10725818252726543827265620Ratregion
5086801BE114642152590453679045519Ratregion
5081767BE11811517054721382147213995Ratregion
5081963BE11892616751473999914740166Ratregion
5081965BE11893315052724500227245152Ratregion
5507559RH68043103851342313513424173Ratregion
5504340D11S303847852685165926852137Ratregion
5504928Runx1t15252733519227335244Ratregion
5504873ha284791354211235542113268Ratregion
5505052Kat2b6853542712335427190Ratregion
5505568UniSTS:482606142254842873348430155Ratregion
5505748UniSTS:492577144853608237636083824Ratregion
5505992UniSTS:49675113152429610724296238Ratregion
5506007UniSTS:49727763954284112642841764Ratregion
5506463GDB:13175647852592491925924997Ratregion
5506553MMP16_92090953154693031547841Ratregion
5506735G4487015651789659617896752Ratregion
5506883G4720419251926619219266384Ratregion
5507101UniSTS:22453919754310892343109120Ratregion
5507181UniSTS:22501415152733436227334513Ratregion
5499527stSG60954810052858531728585417Ratregion
5500170D4Mit10466152159522921595890Ratregion
5499825UniSTS:23487222352830697528307198Ratregion
5499827UniSTS:23489145754912034149120798Ratregion
5499831UniSTS:23489626154938794649388207Ratregion
5503017Fut941653936313039363546Ratregion
5500683D19S909052476216924763167Ratregion
5501722UniSTS:26699014254312507543125217Ratregion
5501848MARC_15705-15706:1013524302:116452491660224916766Ratregion
5502431RH1248149651846945818469554Ratregion
Position Markers

Flank 1: (D5Rat187)
Rat AssemblyChrPosition (strand)Source
GRCr8513,731,153 - 13,731,329 (+)Marker Load Pipeline
mRatBN7.258,948,228 - 8,948,404 (+)MAPPER
Rnor_6.058,632,285 - 8,632,460NCBI
Rnor_5.0513,440,622 - 13,440,797UniSTS
RGSC_v3.458,464,827 - 8,465,004RGD
RGSC_v3.458,464,828 - 8,465,003UniSTS
RGSC_v3.158,464,562 - 8,465,043RGD
Celera58,460,750 - 8,460,925UniSTS
SHRSP x BN Map53.55RGD
SHRSP x BN Map53.55UniSTS
FHH x ACI Map50.0RGD
Flank 2: (D5Rat3)
Rat AssemblyChrPosition (strand)Source
GRCr8543,590,825 - 43,590,997 (+)Marker Load Pipeline
RGSC_v3.4540,136,821 - 40,136,992UniSTS
RGSC_v3.4540,136,669 - 40,137,122RGD
RGSC_v3.1540,137,000 - 40,137,171RGD
Celera537,727,967 - 37,728,130UniSTS
RH 3.4 Map5191.1UniSTS
RH 3.4 Map5191.1RGD
RH 2.0 Map5227.9RGD
SHRSP x BN Map520.3999RGD
FHH x ACI Map521.34RGD


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2293666Bmd38Bone mineral density QTL 384.4femur size trait (VT:1000369)femoral neck cortical cross-sectional area (CMO:0001702)5894822853948228Rat
1578776Stresp18Stress response QTL 182.9thymus mass (VT:0004954)thymus wet weight (CMO:0000855)52795544072955440Rat
1298067Scl15Serum cholesterol level QTL 154.80.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)53321566578215665Rat
1300115Hrtrt7Heart rate QTL 72.76heart pumping trait (VT:2000009)heart rate (CMO:0000002)54786906290099692Rat
1549845Scl44Serum cholesterol level QTL 446blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)540128307148607290Rat
70212Niddm25Non-insulin dependent diabetes mellitus QTL 253.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)51131345958Rat
1358353Srcrtb2Stress Responsive Cort Basal QTL 23.480.003blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)51887394774251464Rat
1300117Hrtrt8Heart rate QTL 83.49heart pumping trait (VT:2000009)heart rate (CMO:0000002)5384401847869213Rat
634305Mamtr1Mammary tumor resistance QTL 10.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)512789751113558310Rat
1331801Rf33Renal function QTL 334.149kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)543726656129132602Rat
1598807Glom12Glomerulus QTL 122.7kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)53321566578215665Rat
2312562Pur18Proteinuria QTL 182.60.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)5213896532656739Rat
1302786Kidm8Kidney mass QTL 828.15kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)53321566578215665Rat
6903292Stl28Serum triglyceride level QTL 282.60.0073blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)52851548973515489Rat
61462Niddm10Non-insulin dependent diabetes mellitus QTL 103.90.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)5511215947171491Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)546711509161317411Rat
1578767Stresp17Stress response QTL 174.30.01blood aldosterone amount (VT:0005346)plasma aldosterone level (CMO:0000551)52795544072955440Rat
7411561Bw134Body weight QTL 134240.001body mass (VT:0001259)body weight gain (CMO:0000420)54946360094463600Rat
631827Alc4Alcohol consumption QTL 43.5consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)5818750118616199Rat
1549901Neudeg2Neurodegradation QTL 240nervous system integrity trait (VT:0010566)mononuclear cell count (CMO:0002119)52483871044045280Rat
1641922Alcrsp8Alcohol response QTL 8alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)53518915368564008Rat
2303615Vencon7Ventilatory control QTL 70.001respiration trait (VT:0001943)respiration rate (CMO:0000289)55098389595983895Rat
2313085Bss59Bone structure and strength QTL 592.90.0001long bone metaphysis morphology trait (VT:0000133)tibia midshaft total cross-sectional area (CMO:0001715)5384401826141981Rat
1576312Emca8Estrogen-induced mammary cancer QTL 84.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)550328551141643988Rat
1641912Alcrsp18Alcohol response QTL 18response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)535189153141643988Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
6903306Scl35Serum cholesterol QTL 352.60.0073blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)52851548973515489Rat
1576317Eutr2Estrogen induced uterine response QTL 20.01uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)534730116104251008Rat
7394712Emca13Estrogen-induced mammary cancer QTL 13mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)5982326699753708Rat
1331773Scl26Serum cholesterol level QTL 263.065blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)54372665686724018Rat
1331771Rf35Renal function QTL 354.36965kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)572947086724018Rat
8662454Vetf3Vascular elastic tissue fragility QTL 327.4artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)5228222669540447Rat
2290448Scl54Serum cholesterol level QTL 542.93blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)531663789131345958Rat
9589025Epfw7Epididymal fat weight QTL 720.660.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)54946360094463600Rat
2303574Gluco42Glucose level QTL 422blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)55349671998496719Rat
1641903Alcrsp3Alcohol response QTL 3response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)51268928557689285Rat
1331756Rf34Renal function QTL 344.16275kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)5190450412Rat
8552954Pigfal14Plasma insulin-like growth factor 1 level QTL 149blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)52122674466226744Rat
2316959Gluco59Glucose level QTL 594.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)534944474113558310Rat
1600358Mamtr5Mammary tumor resistance QTL 5mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)51887394763873947Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_cross_type intercross  
qtl_general number of animals used: 405 males and 423 females from F2 progeny 2293456
qtl_general measurement method: at 26 weeks of age femur was removed and frozen at -20oC, later slices were cut from the femoral neck and cortical area (mm2) measurements taken from pQCT slices 2293456
qtl_general allele: COP alleles affect the hip structure 2293456
qtl_general software package: MAPMAKER/EXP 2293456