Clvs1 (clavesin 1) - Rat Genome Database

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Gene: Clvs1 (clavesin 1) Rattus norvegicus
Analyze
Symbol: Clvs1
Name: clavesin 1
RGD ID: 1564200
Description: Predicted to enable phosphatidylinositol-3,5-bisphosphate binding activity. Involved in lysosome organization. Located in clathrin-coated vesicle and trans-Golgi network. Orthologous to human CLVS1 (clavesin 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; acetamide.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: clavesin-1; hypothetical protein LOC366311; LOC366311; retinaldehyde-binding protein 1-like 1; Retinaldehyde-binding protein 1-like protein 1; RGD1564200; Rlbp1l1; similar to hypothetical protein MGC34646
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8527,107,255 - 27,401,649 (+)NCBIGRCr8
mRatBN7.2522,408,384 - 22,604,281 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl522,408,384 - 22,604,270 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx524,638,301 - 24,832,299 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0526,228,396 - 26,424,268 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0526,008,667 - 26,204,555 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0522,380,318 - 22,580,391 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl522,380,334 - 22,578,297 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0527,115,709 - 27,312,485 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4523,135,749 - 23,336,357 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera521,664,843 - 21,859,477 (+)NCBICelera
Cytogenetic Map5q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. The clavesin family, neuron-specific lipid- and clathrin-binding Sec14 proteins regulating lysosomal morphology. Katoh Y, etal., J Biol Chem. 2009 Oct 2;284(40):27646-54. doi: 10.1074/jbc.M109.034884. Epub 2009 Aug 3.
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Clvs1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8527,107,255 - 27,401,649 (+)NCBIGRCr8
mRatBN7.2522,408,384 - 22,604,281 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl522,408,384 - 22,604,270 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx524,638,301 - 24,832,299 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0526,228,396 - 26,424,268 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0526,008,667 - 26,204,555 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0522,380,318 - 22,580,391 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl522,380,334 - 22,578,297 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0527,115,709 - 27,312,485 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4523,135,749 - 23,336,357 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera521,664,843 - 21,859,477 (+)NCBICelera
Cytogenetic Map5q13NCBI
CLVS1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38860,964,848 - 61,501,629 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl861,057,158 - 61,501,645 (+)EnsemblGRCh38hg38GRCh38
GRCh37862,200,529 - 62,414,188 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36862,363,104 - 62,576,758 (+)NCBINCBI36Build 36hg18NCBI36
Celera858,190,369 - 58,404,047 (+)NCBICelera
Cytogenetic Map8q12.2-q12.3NCBI
HuRef857,688,952 - 57,902,676 (+)NCBIHuRef
CHM1_1862,252,500 - 62,466,191 (+)NCBICHM1_1
T2T-CHM13v2.0861,388,616 - 61,925,370 (+)NCBIT2T-CHM13v2.0
Clvs1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3949,144,753 - 9,451,691 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl49,269,293 - 9,451,691 (+)EnsemblGRCm39 Ensembl
GRCm3849,144,745 - 9,451,691 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl49,269,293 - 9,451,691 (+)EnsemblGRCm38mm10GRCm38
MGSCv3749,196,464 - 9,378,838 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3649,196,509 - 9,378,838 (+)NCBIMGSCv36mm8
Celera49,108,545 - 9,292,342 (+)NCBICelera
Cytogenetic Map4A1NCBI
cM Map44.07NCBI
Clvs1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544417,319,905 - 17,515,421 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544417,319,905 - 17,515,397 (-)NCBIChiLan1.0ChiLan1.0
CLVS1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2776,940,026 - 77,156,897 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1852,599,254 - 52,816,033 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0857,703,459 - 57,921,997 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1859,414,746 - 59,630,784 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl859,252,291 - 59,630,784 (+)Ensemblpanpan1.1panPan2
CLVS1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12911,638,550 - 11,811,853 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2911,638,024 - 11,812,396 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2911,953,510 - 12,128,291 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02911,734,430 - 11,909,539 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2911,734,483 - 11,909,548 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12911,726,549 - 11,901,504 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02911,863,231 - 12,037,919 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02912,133,085 - 12,308,297 (+)NCBIUU_Cfam_GSD_1.0
Clvs1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530362,777,239 - 62,970,859 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649611,812,646 - 12,008,355 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649611,814,627 - 12,008,233 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CLVS1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl472,105,972 - 72,257,226 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1472,104,521 - 72,257,259 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2478,504,691 - 78,655,974 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CLVS1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1857,174,083 - 57,378,424 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl857,174,291 - 57,380,412 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603984,271,844 - 84,482,024 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Clvs1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474430,424,917 - 30,786,645 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474430,423,605 - 30,680,264 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Clvs1
1939 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:893
Count of miRNA genes:317
Interacting mature miRNAs:405
Transcripts:ENSRNOT00000009744
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2293666Bmd38Bone mineral density QTL 384.4femur size trait (VT:1000369)femoral neck cortical cross-sectional area (CMO:0001702)5894822853948228Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
70212Niddm25Non-insulin dependent diabetes mellitus QTL 253.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)51131345958Rat
1358353Srcrtb2Stress Responsive Cort Basal QTL 23.480.003blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)51887394774251464Rat
1300117Hrtrt8Heart rate QTL 83.49heart pumping trait (VT:2000009)heart rate (CMO:0000002)5384401847869213Rat
7394712Emca13Estrogen-induced mammary cancer QTL 13mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)5982326699753708Rat
634305Mamtr1Mammary tumor resistance QTL 10.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)512789751113558310Rat
1331771Rf35Renal function QTL 354.36965kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)572947086724018Rat
2312562Pur18Proteinuria QTL 182.60.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)5213896532656739Rat
8662454Vetf3Vascular elastic tissue fragility QTL 327.4artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)5228222669540447Rat
61462Niddm10Non-insulin dependent diabetes mellitus QTL 103.90.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)5511215947171491Rat
1641903Alcrsp3Alcohol response QTL 3response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)51268928557689285Rat
1331756Rf34Renal function QTL 344.16275kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)5190450412Rat
8552954Pigfal14Plasma insulin-like growth factor 1 level QTL 149blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)52122674466226744Rat
2313085Bss59Bone structure and strength QTL 592.90.0001long bone metaphysis morphology trait (VT:0000133)tibia midshaft total cross-sectional area (CMO:0001715)5384401826141981Rat
1600358Mamtr5Mammary tumor resistance QTL 5mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)51887394763873947Rat

Markers in Region
D5Rat209  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2522,509,722 - 22,510,074 (+)MAPPERmRatBN7.2
mRatBN7.2522,509,847 - 22,510,074 (+)MAPPERmRatBN7.2
Rnor_6.0522,481,610 - 22,482,014NCBIRnor6.0
Rnor_6.0522,481,786 - 22,482,014NCBIRnor6.0
Rnor_5.0527,215,662 - 27,215,890UniSTSRnor5.0
Rnor_5.0527,215,486 - 27,215,890UniSTSRnor5.0
RGSC_v3.4523,240,869 - 23,241,097UniSTSRGSC3.4
RGSC_v3.4523,240,868 - 23,241,097RGDRGSC3.4
RGSC_v3.1523,240,850 - 23,241,219RGD
Celera521,766,907 - 21,767,135UniSTS
FHH x ACI Map56.59RGD
FHH x ACI Map56.59UniSTS
Cytogenetic Map5q13UniSTS
RH134214  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2522,603,238 - 22,603,419 (+)MAPPERmRatBN7.2
Rnor_6.0522,579,349 - 22,579,529NCBIRnor6.0
Rnor_5.0527,311,454 - 27,311,634UniSTSRnor5.0
RGSC_v3.4523,335,326 - 23,335,506UniSTSRGSC3.4
Celera521,858,446 - 21,858,626UniSTS
RH 3.4 Map5130.4UniSTS
Cytogenetic Map5q13UniSTS
RH133813  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2522,604,000 - 22,604,192 (+)MAPPERmRatBN7.2
Rnor_6.0522,580,111 - 22,580,302NCBIRnor6.0
Rnor_5.0527,312,216 - 27,312,407UniSTSRnor5.0
RGSC_v3.4523,336,088 - 23,336,279UniSTSRGSC3.4
Celera521,859,208 - 21,859,399UniSTS
RH 3.4 Map5119.4UniSTS
Cytogenetic Map5q13UniSTS
RH142849  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2522,508,169 - 22,508,329 (+)MAPPERmRatBN7.2
Rnor_6.0522,479,932 - 22,480,091NCBIRnor6.0
Rnor_5.0527,213,808 - 27,213,967UniSTSRnor5.0
RGSC_v3.4523,239,191 - 23,239,350UniSTSRGSC3.4
Celera521,765,229 - 21,765,388UniSTS
RH 3.4 Map5131.2UniSTS
Cytogenetic Map5q13UniSTS
RH139730  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2522,604,139 - 22,604,344 (+)MAPPERmRatBN7.2
Rnor_6.0522,580,250 - 22,580,454NCBIRnor6.0
Rnor_5.0527,312,355 - 27,312,559UniSTSRnor5.0
RGSC_v3.4523,336,227 - 23,336,431UniSTSRGSC3.4
Celera521,859,347 - 21,859,551UniSTS
RH 3.4 Map5130.8UniSTS
Cytogenetic Map5q13UniSTS
RH141951  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2522,505,861 - 22,506,074 (+)MAPPERmRatBN7.2
Rnor_6.0522,477,626 - 22,477,838NCBIRnor6.0
Rnor_5.0527,211,502 - 27,211,714UniSTSRnor5.0
RGSC_v3.4523,236,884 - 23,237,096UniSTSRGSC3.4
Celera521,762,922 - 21,763,134UniSTS
RH 3.4 Map5115.0UniSTS
Cytogenetic Map5q13UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 4 49 107 48 51 27 13 27 5 147 74 93 33 56 24

Sequence


Ensembl Acc Id: ENSRNOT00000009744   ⟹   ENSRNOP00000009744
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl522,408,384 - 22,604,270 (+)Ensembl
Rnor_6.0 Ensembl522,380,334 - 22,578,297 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000087182   ⟹   ENSRNOP00000073425
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl522,408,384 - 22,601,771 (+)Ensembl
Rnor_6.0 Ensembl522,392,732 - 22,578,101 (+)Ensembl
RefSeq Acc Id: NM_001108969   ⟹   NP_001102439
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8527,205,751 - 27,401,638 (+)NCBI
mRatBN7.2522,408,384 - 22,604,270 (+)NCBI
Rnor_6.0522,380,368 - 22,580,380 (+)NCBI
Rnor_5.0527,115,709 - 27,312,485 (+)NCBI
RGSC_v3.4523,135,749 - 23,336,357 (+)RGD
Celera521,664,843 - 21,859,477 (+)RGD
Sequence:
RefSeq Acc Id: XM_017593530   ⟹   XP_017449019
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8527,205,767 - 27,401,649 (+)NCBI
mRatBN7.2522,408,397 - 22,604,281 (+)NCBI
Rnor_6.0522,380,318 - 22,580,391 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017593531   ⟹   XP_017449020
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8527,206,044 - 27,401,649 (+)NCBI
mRatBN7.2522,408,677 - 22,603,731 (+)NCBI
Rnor_6.0522,380,721 - 22,578,946 (+)NCBI
Sequence:
RefSeq Acc Id: XM_063288101   ⟹   XP_063144171
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8527,107,264 - 27,401,649 (+)NCBI
RefSeq Acc Id: XM_063288102   ⟹   XP_063144172
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8527,175,292 - 27,401,649 (+)NCBI
RefSeq Acc Id: XM_063288103   ⟹   XP_063144173
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8527,107,255 - 27,401,649 (+)NCBI
RefSeq Acc Id: XM_063288104   ⟹   XP_063144174
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8527,175,292 - 27,401,649 (+)NCBI
RefSeq Acc Id: NP_001102439   ⟸   NM_001108969
- UniProtKB: A6JFQ6 (UniProtKB/Swiss-Prot),   A6JFQ7 (UniProtKB/TrEMBL),   F1LRF3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017449019   ⟸   XM_017593530
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017449020   ⟸   XM_017593531
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSRNOP00000073425   ⟸   ENSRNOT00000087182
Ensembl Acc Id: ENSRNOP00000009744   ⟸   ENSRNOT00000009744
RefSeq Acc Id: XP_063144173   ⟸   XM_063288103
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063144171   ⟸   XM_063288101
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063144174   ⟸   XM_063288104
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063144172   ⟸   XM_063288102
- Peptide Label: isoform X1
Protein Domains
CRAL-TRIO

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A6JFQ6-F1-model_v2 AlphaFold A6JFQ6 1-354 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693557
Promoter ID:EPDNEW_R4081
Type:initiation region
Name:Clvs1_1
Description:clavesin 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0522,380,400 - 22,380,460EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1564200 AgrOrtholog
BioCyc Gene G2FUF-42000 BioCyc
Ensembl Genes ENSRNOG00000006919 Ensembl, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00055019760 UniProtKB/Swiss-Prot
  ENSRNOG00060015867 UniProtKB/Swiss-Prot
  ENSRNOG00065014968 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000009744 UniProtKB/TrEMBL
  ENSRNOT00000009744.6 UniProtKB/Swiss-Prot
  ENSRNOT00000087182.2 UniProtKB/TrEMBL
  ENSRNOT00055033745 UniProtKB/Swiss-Prot
  ENSRNOT00060027174 UniProtKB/Swiss-Prot
  ENSRNOT00065024761 UniProtKB/Swiss-Prot
Gene3D-CATH 3.40.525.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Alpha-tocopherol transfer UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  N-terminal domain of phosphatidylinositol transfer protein sec14p UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro CRAL-TRIO_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CRAL-TRIO_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CRAL/TRIO_N_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CRAL/TRIO_N_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:366311 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 366311 ENTREZGENE
PANTHER ALPHA-TOCOPHEROL TRANSFER PROTEIN-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR10174:SF72 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam CRAL_TRIO UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CRAL_TRIO_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Clvs1 PhenoGen
PRINTS CRETINALDHBP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE CRAL_TRIO UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000006919 RatGTEx
  ENSRNOG00055019760 RatGTEx
  ENSRNOG00060015867 RatGTEx
  ENSRNOG00065014968 RatGTEx
SMART CRAL_TRIO_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SEC14 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF46938 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF52087 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2K5H2_RAT UniProtKB/TrEMBL
  A6JFQ6 ENTREZGENE
  A6JFQ7 ENTREZGENE, UniProtKB/TrEMBL
  CLVS1_RAT UniProtKB/Swiss-Prot
  F1LRF3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 RGD1564200  similar to hypothetical protein MGC34646   RGD1564200_predicted  similar to hypothetical protein MGC34646 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1564200_predicted  similar to hypothetical protein MGC34646 (predicted)  LOC366311  similar to hypothetical protein MGC34646  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC366311  similar to hypothetical protein MGC34646      Symbol and Name status set to provisional 70820 PROVISIONAL