CLVS1 (clavesin 1) - Rat Genome Database

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Gene: CLVS1 (clavesin 1) Pan paniscus
Analyze
Symbol: CLVS1
Name: clavesin 1
RGD ID: 11675873
Description: ENCODES a protein that exhibits lipid binding (inferred); phosphatidylinositol bisphosphate binding (inferred); phosphatidylinositol-3,5-bisphosphate binding (inferred); INVOLVED IN lysosome organization (inferred); ASSOCIATED WITH CHARGE syndrome (ortholog); FOUND IN clathrin-coated vesicle (inferred); early endosome membrane (inferred); endosome (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: clavesin-1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2776,940,026 - 77,156,897 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1852,599,254 - 52,816,033 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0857,703,459 - 57,921,997 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1859,414,746 - 59,630,784 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl859,252,291 - 59,630,784 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
CLVS1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2776,940,026 - 77,156,897 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1852,599,254 - 52,816,033 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0857,703,459 - 57,921,997 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1859,414,746 - 59,630,784 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl859,252,291 - 59,630,784 (+)Ensemblpanpan1.1panPan2
CLVS1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38860,964,848 - 61,501,629 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl861,057,158 - 61,501,645 (+)EnsemblGRCh38hg38GRCh38
GRCh37862,200,529 - 62,414,188 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36862,363,104 - 62,576,758 (+)NCBINCBI36Build 36hg18NCBI36
Celera858,190,369 - 58,404,047 (+)NCBICelera
Cytogenetic Map8q12.2-q12.3NCBI
HuRef857,688,952 - 57,902,676 (+)NCBIHuRef
CHM1_1862,252,500 - 62,466,191 (+)NCBICHM1_1
T2T-CHM13v2.0861,388,616 - 61,925,370 (+)NCBIT2T-CHM13v2.0
Clvs1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3949,144,753 - 9,451,691 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl49,269,293 - 9,451,691 (+)EnsemblGRCm39 Ensembl
GRCm3849,144,745 - 9,451,691 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl49,269,293 - 9,451,691 (+)EnsemblGRCm38mm10GRCm38
MGSCv3749,196,464 - 9,378,838 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3649,196,509 - 9,378,838 (+)NCBIMGSCv36mm8
Celera49,108,545 - 9,292,342 (+)NCBICelera
Cytogenetic Map4A1NCBI
cM Map44.07NCBI
Clvs1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8527,107,255 - 27,401,649 (+)NCBIGRCr8
mRatBN7.2522,408,384 - 22,604,281 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl522,408,384 - 22,604,270 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx524,638,301 - 24,832,299 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0526,228,396 - 26,424,268 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0526,008,667 - 26,204,555 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0522,380,318 - 22,580,391 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl522,380,334 - 22,578,297 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0527,115,709 - 27,312,485 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4523,135,749 - 23,336,357 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera521,664,843 - 21,859,477 (+)NCBICelera
Cytogenetic Map5q13NCBI
Clvs1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544417,319,905 - 17,515,421 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544417,319,905 - 17,515,397 (-)NCBIChiLan1.0ChiLan1.0
CLVS1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12911,638,550 - 11,811,853 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2911,638,024 - 11,812,396 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2911,953,510 - 12,128,291 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02911,734,430 - 11,909,539 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2911,734,483 - 11,909,548 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12911,726,549 - 11,901,504 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02911,863,231 - 12,037,919 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02912,133,085 - 12,308,297 (+)NCBIUU_Cfam_GSD_1.0
Clvs1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530362,777,239 - 62,970,859 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649611,812,646 - 12,008,355 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649611,814,627 - 12,008,233 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CLVS1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl472,105,972 - 72,257,226 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1472,104,521 - 72,257,259 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2478,504,691 - 78,655,974 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CLVS1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1857,174,083 - 57,378,424 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl857,174,291 - 57,380,412 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603984,271,844 - 84,482,024 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Clvs1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474430,424,917 - 30,786,645 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474430,423,605 - 30,680,264 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003805105 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSPPAT00000043133   ⟹   ENSPPAP00000020341
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl859,252,291 - 59,628,689 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000043143   ⟹   ENSPPAP00000020351
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl859,414,746 - 59,630,784 (+)Ensembl
RefSeq Acc Id: XM_003805105   ⟹   XP_003805153
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2776,940,026 - 77,156,897 (+)NCBI
NHGRI_mPanPan1852,599,254 - 52,816,033 (+)NCBI
Mhudiblu_PPA_v0857,703,459 - 57,921,997 (+)NCBI
PanPan1.1859,414,746 - 59,630,784 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003805153 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000020341.1
  ENSPPAP00000020351
  ENSPPAP00000020351.1
RefSeq Acc Id: XP_003805153   ⟸   XM_003805105
- UniProtKB: A0A2R9ASN8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSPPAP00000020341   ⟸   ENSPPAT00000043133
Ensembl Acc Id: ENSPPAP00000020351   ⟸   ENSPPAT00000043143
Protein Domains
CRAL-TRIO


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000033393 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000043133.1 UniProtKB/TrEMBL
  ENSPPAT00000043143.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.525.10 UniProtKB/TrEMBL
  Alpha-tocopherol transfer UniProtKB/TrEMBL
  N-terminal domain of phosphatidylinositol transfer protein sec14p UniProtKB/TrEMBL
InterPro CRAL-TRIO_dom UniProtKB/TrEMBL
  CRAL-TRIO_dom_sf UniProtKB/TrEMBL
  CRAL/TRIO_N_dom UniProtKB/TrEMBL
  CRAL/TRIO_N_dom_sf UniProtKB/TrEMBL
KEGG Report pps:100977373 UniProtKB/TrEMBL
NCBI Gene CLVS1 ENTREZGENE
PANTHER ALPHA-TOCOPHEROL TRANSFER PROTEIN-RELATED UniProtKB/TrEMBL
  PTHR10174:SF72 UniProtKB/TrEMBL
Pfam CRAL_TRIO UniProtKB/TrEMBL
  CRAL_TRIO_N UniProtKB/TrEMBL
PRINTS CRETINALDHBP UniProtKB/TrEMBL
PROSITE CRAL_TRIO UniProtKB/TrEMBL
SMART CRAL_TRIO_N UniProtKB/TrEMBL
  SEC14 UniProtKB/TrEMBL
Superfamily-SCOP SSF46938 UniProtKB/TrEMBL
  SSF52087 UniProtKB/TrEMBL
UniProt A0A2R9ASN8 ENTREZGENE, UniProtKB/TrEMBL