Slc26a7 (solute carrier family 26 member 7)

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Gene: Slc26a7 (solute carrier family 26 member 7) Rattus norvegicus

Analyze

Symbol:

Slc26a7

Name:

solute carrier family 26 member 7

RGD ID:

1310846

Description:

Predicted to enable salt transmembrane transporter activity. Predicted to be involved in gastric acid secretion; organic anion transport; and sulfate transport. Predicted to act upstream of or within chloride transmembrane transport. Located in basolateral plasma membrane. Orthologous to human SLC26A7 (solute carrier family 26 member 7); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; bisphenol A.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

anion exchange transporter; LOC297910; solute carrier family 26 (anion exchanger), member 7; solute carrier family 26, member 7

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SLC26A7 (solute carrier family 26 member 7)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther
Mus musculus (house mouse):	Slc26a7 (solute carrier family 26, member 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Slc26a7 (solute carrier family 26 member 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SLC26A7 (solute carrier family 26 member 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SLC26A7 (solute carrier family 26 member 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Slc26a7 (solute carrier family 26 member 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SLC26A7 (solute carrier family 26 member 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SLC26A7 (solute carrier family 26 member 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Slc26a7 (solute carrier family 26 member 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	SLC26A7 (solute carrier family 26 member 7)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Slc26a7 (solute carrier family 26, member 7)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Prestin	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|PhylomeDB)
Saccharomyces cerevisiae (baker's yeast):	YPR003C	Alliance	DIOPT (Hieranoid\|InParanoid\|PANTHER)
Caenorhabditis elegans (roundworm):	sulp-1	Alliance	DIOPT (OrthoFinder\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	sulp-2	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	sulp-3	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	sulp-5	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	sulp-6	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	sulp-7	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	sulp-8	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	5	27,884,400 - 28,021,865 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	27,887,042 - 28,021,658 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	30,028,810 - 30,164,100 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	5	31,621,448 - 31,756,752 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	5	31,581,606 - 31,716,918 (-)	NCBI	Rnor_WKY
Rnor_6.0	5	27,986,656 - 28,131,294 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	27,986,663 - 28,177,340 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	32,676,375 - 32,816,664 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	28,899,539 - 29,035,178 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	5	28,899,654 - 29,034,843 (-)	NCBI
Celera	5	27,155,652 - 27,282,161 (-)	NCBI		Celera
Cytogenetic Map	5	q13	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

congenital hypothyroidism (ISO,ISS)

genetic disease (ISO)

schizophrenia (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,1-dichloroethene (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

3-phenylprop-2-enal (ISO)

8-Br-cAMP (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

antirheumatic drug (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

cadmium dichloride (EXP)

CGP 52608 (ISO)

dextran sulfate (ISO)

dibutyl phthalate (ISO)

epoxiconazole (ISO)

genistein (ISO)

gentamycin (EXP)

lead diacetate (EXP)

lipopolysaccharide (ISO)

methyl methanesulfonate (ISO)

nickel atom (ISO)

perfluorohexanesulfonic acid (ISO)

perfluorononanoic acid (ISO)

perfluorooctanoic acid (ISO)

pioglitazone (ISO)

potassium bromate (ISO)

progesterone (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

serpentine asbestos (ISO)

titanium dioxide (ISO)

trichloroethene (EXP)

tris(2-butoxyethyl) phosphate (ISO)

vancomycin (ISO)

XL147 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

bicarbonate transport (ISO)

chloride transport (ISO)

gastric acid secretion (ISO)

monoatomic anion transport (ISO)

oxalate transport (ISO)

sulfate transmembrane transport (IEA)

sulfate transport (ISO)

Cellular Component

basolateral plasma membrane (IBA,IDA,ISO)

cytoplasm (ISO)

endosome (ISO)

Molecular Function

bicarbonate transmembrane transporter activity (IBA,ISO)

chloride channel activity (ISO)

chloride transmembrane transporter activity (IBA)

monoatomic anion channel activity (ISO)

oxalate transmembrane transporter activity (IBA,ISO)

sulfate transmembrane transporter activity (IBA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Regulation of the basolateral chloride/base exchangers AE1 and SLC26A7 in the kidney collecting duct in potassium depletion.	Barone S, etal., Nephrol Dial Transplant. 2007 Dec;22(12):3462-70. Epub 2007 Sep 5.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	GOA pipeline	RGD automated data pipeline
5.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:1183472	PMID:11834742	PMID:12736153	PMID:15591059	PMID:16352747	PMID:16524946	PMID:17404755	PMID:18663336	PMID:26671068	PMID:35644541

Genomics

Comparative Map Data

Slc26a7
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	5	27,884,400 - 28,021,865 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	27,887,042 - 28,021,658 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	30,028,810 - 30,164,100 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	5	31,621,448 - 31,756,752 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	5	31,581,606 - 31,716,918 (-)	NCBI	Rnor_WKY
Rnor_6.0	5	27,986,656 - 28,131,294 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	27,986,663 - 28,177,340 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	32,676,375 - 32,816,664 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	28,899,539 - 29,035,178 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	5	28,899,654 - 29,034,843 (-)	NCBI
Celera	5	27,155,652 - 27,282,161 (-)	NCBI		Celera
Cytogenetic Map	5	q13	NCBI

SLC26A7
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	8	91,209,496 - 91,398,155 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	8	91,209,494 - 91,398,155 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	8	92,221,724 - 92,410,383 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	8	92,330,692 - 92,479,554 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	8	92,330,691 - 92,476,122	NCBI
Celera	8	88,455,583 - 88,604,581 (+)	NCBI		Celera
Cytogenetic Map	8	q21.3	NCBI
HuRef	8	87,472,771 - 87,621,653 (+)	NCBI		HuRef
CHM1_1	8	92,302,075 - 92,450,906 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	8	92,334,433 - 92,523,083 (+)	NCBI		T2T-CHM13v2.0

Slc26a7
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	14,502,430 - 14,621,946 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	14,502,430 - 14,621,805 (-)	Ensembl		GRCm39 Ensembl
GRCm38	4	14,502,430 - 14,621,946 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	14,502,430 - 14,621,805 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	14,432,344 - 14,548,925 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	14,432,344 - 14,548,904 (-)	NCBI		MGSCv36	mm8
Celera	4	14,304,930 - 14,422,336 (-)	NCBI		Celera
Cytogenetic Map	4	A1	NCBI

Slc26a7
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955417	7,987,835 - 8,127,729 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955417	7,977,292 - 8,127,241 (+)	NCBI	ChiLan1.0	ChiLan1.0

SLC26A7
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	8	89,861,300 - 90,009,899 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	8	89,861,279 - 90,009,899 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	8	87,908,807 - 88,057,623 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3

SLC26A7
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	29	36,616,054 - 36,729,705 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	29	36,615,676 - 36,726,803 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	29	36,768,037 - 36,881,698 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	29	36,817,996 - 36,931,302 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	29	36,818,069 - 36,931,262 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	29	36,836,949 - 36,950,596 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	29	36,818,733 - 36,931,876 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	29	37,257,966 - 37,371,852 (+)	NCBI		UU_Cfam_GSD_1.0

Slc26a7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	42,849,303 - 42,949,574 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936544	4,843,116 - 4,945,789 (+)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936544	4,843,156 - 4,943,402 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SLC26A7
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	45,448,889 - 45,637,389 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	4	45,410,795 - 45,637,500 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	49,029,845 - 49,138,217 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SLC26A7
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	8	86,281,314 - 86,454,970 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	8	86,311,373 - 86,454,960 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666039	54,408,693 - 54,582,100 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Slc26a7
(Heterocephalus glaber - naked mole-rat)

Naked Mole-rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624744	603,123 - 750,121 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624744	600,137 - 750,505 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Slc26a7
822 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	335
Count of miRNA genes:	205
Interacting mature miRNAs:	234
Transcripts:	ENSRNOT00000067331
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1331756	Rf34	Renal function QTL 34	4.16275		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	5	1	90450412	Rat
70212	Niddm25	Non-insulin dependent diabetes mellitus QTL 25	3.54		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	1	131345958	Rat
1331771	Rf35	Renal function QTL 35	4.36965		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	5	729470	86724018	Rat
2312562	Pur18	Proteinuria QTL 18	2.6	0.001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	5	2138965	32656739	Rat
1576314	Eutr1	Estrogen induced uterine response QTL 1			uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	2138965	166875058	Rat
8662454	Vetf3	Vascular elastic tissue fragility QTL 3	27.4		artery integrity trait (VT:0010639)	number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)	5	2282226	69540447	Rat
1300117	Hrtrt8	Heart rate QTL 8	3.49		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	5	3844018	47869213	Rat
61462	Niddm10	Non-insulin dependent diabetes mellitus QTL 10	3.9	0.001	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	5	5112159	47171491	Rat
2293666	Bmd38	Bone mineral density QTL 38	4.4		femur size trait (VT:1000369)	femoral neck cortical cross-sectional area (CMO:0001702)	5	8948228	53948228	Rat
7394712	Emca13	Estrogen-induced mammary cancer QTL 13			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	9823266	99753708	Rat
1641903	Alcrsp3	Alcohol response QTL 3			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	5	12689285	57689285	Rat
634305	Mamtr1	Mammary tumor resistance QTL 1		0.0001	mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	12789751	113558310	Rat
1600358	Mamtr5	Mammary tumor resistance QTL 5			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	18873947	63873947	Rat
1358353	Srcrtb2	Stress Responsive Cort Basal QTL 2	3.48	0.003	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	5	18873947	74251464	Rat
8552954	Pigfal14	Plasma insulin-like growth factor 1 level QTL 14	9		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	21226744	66226744	Rat
1549901	Neudeg2	Neurodegradation QTL 2	4	0	nervous system integrity trait (VT:0010566)	mononuclear cell count (CMO:0002119)	5	24838710	44045280	Rat
1578767	Stresp17	Stress response QTL 17	4.3	0.01	blood aldosterone amount (VT:0005346)	plasma aldosterone level (CMO:0000551)	5	27955440	72955440	Rat
1578776	Stresp18	Stress response QTL 18	2.9		thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	5	27955440	72955440	Rat

Markers in Region

D5Arb22

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	28,013,259 - 28,013,437 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	28,122,739 - 28,122,916	NCBI	Rnor6.0
Rnor_5.0	5	32,808,069 - 32,808,246	UniSTS	Rnor5.0
RGSC_v3.4	5	29,026,739 - 29,026,917	RGD	RGSC3.4
RGSC_v3.4	5	29,026,740 - 29,026,917	UniSTS	RGSC3.4
RGSC_v3.1	5	29,026,739 - 29,026,917	RGD
Celera	5	27,273,782 - 27,273,959	UniSTS
Cytogenetic Map	5	q13	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium										8	14
Low	2	6					3	3	63	27	26		3
Below cutoff	1	16	22	8	9	8	4	4	7		1	7	4

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001106638	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006237911	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006237912	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006237913	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008763530	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008763531	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039109418	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039109419	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039109420	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039109421	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039109422	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473962	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000161	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000067331 ⟹ ENSRNOP00000058989

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	27,887,042 - 28,021,658 (-)	Ensembl
Rnor_6.0 Ensembl	5	27,989,298 - 28,131,133 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000088165 ⟹ ENSRNOP00000074966

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	5	27,986,663 - 28,164,326 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000093186 ⟹ ENSRNOP00000076092

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	27,887,042 - 28,021,658 (-)	Ensembl
Rnor_6.0 Ensembl	5	27,987,414 - 28,130,803 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000093409 ⟹ ENSRNOP00000076107

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	27,887,042 - 28,021,658 (-)	Ensembl
Rnor_6.0 Ensembl	5	28,006,549 - 28,177,340 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000106456 ⟹ ENSRNOP00000094547

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	27,935,356 - 28,021,658 (-)	Ensembl

RefSeq Acc Id:

NM_001106638 ⟹ NP_001100108

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	27,887,025 - 28,021,658 (-)	NCBI
Rnor_6.0	5	27,989,281 - 28,131,133 (-)	NCBI
Rnor_5.0	5	32,676,375 - 32,816,664 (-)	NCBI
RGSC_v3.4	5	28,899,539 - 29,035,178 (-)	RGD
Celera	5	27,155,652 - 27,282,161 (-)	RGD

Sequence:

show sequence

ATTCCTTTTCCAAGATCAGAAAAGTAGTACATGAACAGGGACCCATTTCTTATTGAGATAAGAA
CTCAAGTTGACTACTACAGGAGGGAATCTGAGAAATGACGGGGGCAAAGAGGAAAAAGAGAAGC
GTGCTGTGGGGCAAGATGCACACCCCCCACCGAGAAGACATTAAACAGTGGTGTAAGAGGCGCC
TACCTATCTTGGAATGGGCACCGCAGTACAATCTGAAGGAAAACCTGCTTCCAGACACCGTGTC
TGGCGTACTGTTGGCAGTTCAACAGGTGACACAAGGGCTGTCCTTCGCTATTCTTTCATCTGTA
CACCCAGTTTTTGGTTTATACGGATCTCTGTTTCCTGCCATCATTTATGCGATATTTGGAATGG
GACGCCATGTTGCCACAGGCACCTTTGCCTTGACGTCCTTGATATCAGCCAATGCTGTGGAACG
GCTGGTCCCTCAGAGCAATAGAAACCTCACCACACAGAGCAACTCAAGCGTGCTGGGCTTATCG
GAGTTTGAGCTGCAGAGAATCGGGGTTGCAGCAGCCGTTTCATTCTTGGGCGGAGTGATTCAGA
TCTATGCGTATGTTTTTGAGAACATCAAGTCTGTCCAGCTGGAAGCACTGCTCTTGTCCTTGCT
GAGCATTGTTGTCCTTGTCCTCGTTAAAGAGCTGAACGAGCAGTTTAAGAGAAAGATTAAAGTT
GTTCTTCCTGTCGACTTAGTTTTGATCATTGCTGCCTCATTTGCTTGCTATTGTACCAACATGG
AAAACACATACGGATTAGAAGTAGTTGGGCGCATTCCAAAAGGGATCCCTCCGCCCCGTGCTCC
CCCAATGAACATCCTCTCCGCAGTGCTCACGGAAGCTTTCGGAGTTGCACTTGTAGGCTACGTG
GCCTCGCTGGCTCTCGCACAAGGATCTGCCAAGAAGTTCAAATATTCAGTTGATGACAACCAGG
AATTTTTGGCCCATGGCCTCAGCAACGTGATTCCTTCATTTCTCTTCTGCATCCCAAGCGCCGC
CGCCATGGGAAGGACAGCTGGTCTGTACAGCACGGGGGCAAAGACACAGGTGGCTTGTCTAATA
TCTTGCATTTTCGTCCTTATAGTCATCTATGCAATAGGACCCTTGCTGTACTGGCTGCCCATGT
GCGTTCTTGCAAGTATTATTGTTGTGGGACTGAAAGGAATGTTAATACAGTTCCGGGATTTAAA
AAAATACTGGAATGTGGATAAAATCGATTGGGGCATATGGATCAGCACTTACATTTTTACAATA
TGCTTCGCTGCCAACGTGGGACTGCTCTTTGGTGTTGTCTGCACCATAGCTATCGTGTTAGGGC
GTTTCCCAAGGGCAAAGACTTTAAGCATAACAGACATGAAAGAAATGGAATTGAAGGTGAAGAC
AGAAACGTATGATGAAAACTCGCAACAGATAAAAATCATCTCAATAAACAACCCACTTGTTTTC
CTGAATGCAAAGAAATTTAGTGCTGATCTTATGAAAATAATCCTAAAGGAAACTGACGGCAGCC
AAGCACTTGATGATGTCAGCAAGTGTGAACAGAACACCTTGCTCAGTCCCCTGCCCAACGGGAG
CTGCACTGAAGAAGCCTCCCAGCCCTGCCCCAGTGAGAAGTATTCTTTGGTCCTGAATTGCAGT
GGCTTGACCTTTTTCGACTACACAGGAGTCTCCACACTTGTTGAGCTCTACCTTGATTGCAAGA
GCAGGAGTGTGGATGTGTTCTTAGCCAACTGTACAGCATCCTTGATAAAAGCGATGACATACTA
TGGAGACCTAGACACTGAAAAACCAATTTTTTTTGACTCGGTAGCCACTGCAATAAGTGTCATC
CAATCAAATAAGAATTTGAGCAAGGACACTGACCACAGTGAAGTCTGAGGTCCACGCATTGAAA
TGCACATCTCATCTTTAGCACCTGCCCCAAAGAGGCCAGATACTGGCATTTTGCACTCATTTTG
GTGTATATACTGTATATCTCTTAATTAGAATGATGTGAGTTGGCAACTGGATAGCCACTGGCCA
AGACTTGCTGACATCCTATTTTTTCTAATTTTTCTTAATAAACAGATTCATTAGTTATTTCATA
TAGGCATCAATATGCATGTAGCTTTAGTTTAATGAACAGTAAACATGCTTTTATTTCCAGTTAT
AAGAGTATTTTGTATGGTTTCATTTTTGTTGTAAGCTAACAAATGGAGAAATATTTTTATCAGA
AATGGTTTGGATTATTTATAAACCATTCATAAAAAAATTAAGATC

hide sequence

RefSeq Acc Id:

XM_006237911 ⟹ XP_006237973

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	27,884,400 - 28,021,863 (-)	NCBI
Rnor_6.0	5	27,986,656 - 28,131,293 (-)	NCBI
Rnor_5.0	5	32,676,375 - 32,816,664 (-)	NCBI

Sequence:

show sequence

TGGATCCTTCCTGGTTTCATTAGCATAGCCCAGCCCACTTCCACCACACGCCCAGAACTACCTC
ATTAACCATTGGGAATGCAGCCAAAAAACATAAGACGACAGTGAATATAAGGAGAATTACTGGC
AAGGGAGCTGTAACCATCTCACCGCCGAACCCATTCCTTTTCCAAGATCAGAAAAGTAGTACAT
GAACAGGGACCCATTTCTTATTGAGATAAGAACTCAAGCTTTGACATTGTAAACCACAGACGGA
TTGGAGCCTGGCATCGAAAGGAGGTGTTCTCCAACGATTTTTTTCTCTCTCCCTTGCCTGAAAA
AGTTGACTACTACAGGAGGGAATCTGAGAAATGACGGGGGCAAAGAGGAAAAAGAGAAGCGTGC
TGTGGGGCAAGATGCACACCCCCCACCGAGAAGACATTAAACAGTGGTGTAAGAGGCGCCTACC
TATCTTGGAATGGGCACCGCAGTACAATCTGAAGGAAAACCTGCTTCCAGACACCGTGTCTGGC
GTACTGTTGGCAGTTCAACAGGTGACACAAGGGCTGTCCTTCGCTATTCTTTCATCTGTACACC
CAGTTTTTGGTTTATACGGATCTCTGTTTCCTGCCATCATTTATGCGATATTTGGAATGGGACG
CCATGTTGCCACAGGCACCTTTGCCTTGACGTCCTTGATATCAGCCAATGCTGTGGAACGGCTG
GTCCCTCAGAGCAATAGAAACCTCACCACACAGAGCAACTCAAGCGTGCTGGGCTTATCGGAGT
TTGAGCTGCAGAGAATCGGGGTTGCAGCAGCCGTTTCATTCTTGGGCGGAGTGATTCAGCTGGT
CATGTTTGTGCTGCAGCTAGGCAATGCCACATTCCTGCTTACGGAGCCAGTGATCAGTGCCATG
ACCACCGGCGCTGCCACCCATGTTGTGACGTCACAAGTCAAGTATCTCTTGGGAATAAAAATGC
CATATATATCTGGACCACTGGGATTCTTTTATATCTATGCGTATGTTTTTGAGAACATCAAGTC
TGTCCAGCTGGAAGCACTGCTCTTGTCCTTGCTGAGCATTGTTGTCCTTGTCCTCGTTAAAGAG
CTGAACGAGCAGTTTAAGAGAAAGATTAAAGTTGTTCTTCCTGTCGACTTAGTTTTGATCATTG
CTGCCTCATTTGCTTGCTATTGTACCAACATGGAAAACACATACGGATTAGAAGTAGTTGGGCG
CATTCCAAAAGGGATCCCTCCGCCCCGTGCTCCCCCAATGAACATCCTCTCCGCAGTGCTCACG
GAAGCTTTCGGAGTTGCACTTGTAGGCTACGTGGCCTCGCTGGCTCTCGCACAAGGATCTGCCA
AGAAGTTCAAATATTCAGTTGATGACAACCAGGAATTTTTGGCCCATGGCCTCAGCAACGTGAT
TCCTTCATTTCTCTTCTGCATCCCAAGCGCCGCCGCCATGGGAAGGACAGCTGGTCTGTACAGC
ACGGGGGCAAAGACACAGGTGGCTTGTCTAATATCTTGCATTTTCGTCCTTATAGTCATCTATG
CAATAGGACCCTTGCTGTACTGGCTGCCCATGTGCGTTCTTGCAAGTATTATTGTTGTGGGACT
GAAAGGAATGTTAATACAGTTCCGGGATTTAAAAAAATACTGGAATGTGGATAAAATCGATTGG
GGCATATGGATCAGCACTTACATTTTTACAATATGCTTCGCTGCCAACGTGGGACTGCTCTTTG
GTGTTGTCTGCACCATAGCTATCGTGTTAGGGCGTTTCCCAAGGGCAAAGACTTTAAGCATAAC
AGACATGAAAGAAATGGAATTGAAGGTGAAGACAGAAACGTATGATGAAAACTCGCAACAGATA
AAAATCATCTCAATAAACAACCCACTTGTTTTCCTGAATGCAAAGAAATTTAGTGCTGATCTTA
TGAAAATAATCCTAAAGGAAACTGACGGCAGCCAAGCACTTGATGATGTCAGCAAGTGTGAACA
GAACACCTTGCTCAGTCCCCTGCCCAACGGGAGCTGCACTGAAGAAGCCTCCCAGCCCTGCCCC
AGTGAGAAGTATTCTTTGGTCCTGAATTGCAGTGGCTTGACCTTTTTCGACTACACAGGAGTCT
CCACACTTGTTGAGCTCTACCTTGATTGCAAGAGCAGGAGTGTGGATGTGTTCTTAGCCAACTG
TACAGCATCCTTGATAAAAGCGATGACATACTATGGAGACCTAGACACTGAAAAACCAATTTTT
TTTGACTCGGTAGCCACTGCAATAAGTGTCATCCAATCAAATAAGAATTTGAGCAAGGACACTG
ACCACAGTGAAGTCTGAGGTCCACGCATTGAAATGCACATCTCATCTTTAGCACCTGCCCCAAA
GAGGCCAGATACTGGCATTTTGCACTCATTTTGGTGTATATACTGTATATCTCTTAATTAGAAT
GATGTGAGTTGGCAACTGGATAGCCACTGGCCAAGACTTGCTGACATCCTATTTTTTCTAATTT
TTCTTAATAAACAGATTCATTAGTTATTTCATATAGGCATCAATATGCATGTAGCTTTAGTTTA
ATGAACAGTAAACATGCTTTTATTTCCAGTTATAAGAGTATTTTGTATGGTTTCATTTTTGTTG
TAAGCTAACAAATGGAGAAATATTTTTATCAGAAATGGTTTGGATTATTTATAAACCATTCATA
AAAAAATTAAGATCATCTAGTACATAAAAAAGTATTAACAAATGTGCCATTTCTCCATAGTTTT
TATCCCAAAATTATTTGAACATCAGTTAGATAAAGTATCACTTTTATACAGGGAAAATGAAATC
CATAGATATAAAACAAGTGAGAAAGAGACAAATTAGAAGTTATTAATGTCAATGCCCATCAACA
CACTCACTCTGACAATATTCATATATTCAATTATGAGTTCATATTTGGAAGAAAACTAATGTTT
TAGCAAAACTAAGTTCTTGATGTTTATCTGCTGAATTGTGGATACTGGAGACCATTTGTGTGTT
TAATCAGATAACTCTGACTTCTGCATTGCAACACATAAGATATTCTGCTTTCAAACTTCTTTCT
TGCAATCAGAGAATATGAGAATTTGATATGTATTTTTTCAAAAATATGCATTTTTCAATGATAA
AATATCATAAGTAGAATGCTTTTGTGCTTTTGGATACAAGATTAACCCTTAGAAATTTTGAATT
TTCTATTTGAGATATAAAAAGTCAACAAAATATAATATGTTATTGATCTATACCAAGATAGATA
GATTGAAGATAGAACGACAGACAGACAGACAGAAGACAGGTAGACAACAGACAGATGACAGACA
GATCTCCAAGGTATGTTTTCCATTTTCTTTTGTTAGAGATGAGCTTGAATGTGATTATACGTAA
ATTTGCTAATACAATAGGATAATTTATAACACTAATGGCCAGATATAAGTGTAAACATTTTTCA
TACTTGTATATTTTATTTTTATCTATATACAAGAATGAAATTTCACAATTTTTTAAACAAATTG
TCTTATATATGAAGCCACAGATTAAATTATGATTTATCCTTAATAGCATCTAAAACATTCTACA
AAGTTAGTAACGCTGTCAGAAAAAAAAAAAACAAAACACAAAAAAAAAAAAAACAGCAAAGGGA
GTTTGAAAAGCAAGTTAAAAATTGGCCTTCTGGTGTGGTTCTTATGGGCATCTGTAAGAGCAAA
TTCTAACTCCTGTCCAAATGACAGAGTGGAATAGTCCTTCGCCAGTGCAAGGTAAACATTTACA
CAATCCACTGTTTTAACACCTCACTCTTTGGCAGGATGAAATAATAAGTGAAAACTAAAAATAG
CGCTCTAAATTTTCATGGTCATTTTCAATTTTTACTGAAACAAATTCAAAAGTCTTGTTCCCCC
AAATTGCCCCAATTTCTTCATCACTTATTGGGGTAGTACCAAGTAAGGTGACCAGTATTGCTCA
TCAGATAGGTTTCTAAGGGAAGTCTGAGGGAGAATTAGAAAGGAGTTTTATTCTGCGTCATCCA
CTTCCCTTACTCTATACGTGCAGAGTGGTGGACTCTACCTTGTAATCAGGAGTCATGCGAAGCC
AAGAAAAGAAATAGATTATGGTGCATAGAAAGTGATATTTTGCTATACAAATTTGACCTTAATT
AAATTCATGAGTTGTAGGCATTTTTAATTTGTTGTAGATGATGGGCCTTGGGTGACATTAAAGT
CATTATAGCTATTTGTTGGATAGTTTTTCTGTTTCGTTGTGAATGCTCAGACAGTATTGTCTGA
GAAACTGCATCTGAGTGCATTTAAGTATAAGCTTAATGCATAAAAAGTCAACCCCATCAATTTC
AGTATCAAACATTGTTACAGCCAAAACAAGAAAGACAAGACCACACACTGTATAAAGTCCACTG
CTCTATAGTTTATGCCAAGACCACAATCTTTTTAACCCAAAGAAAGTCTCTTAATTAAGGTCCA
AGGCTCCAAGAACTGCACATAAGTTTTAGACATACAAGTGTTTATTTCAAAGCAGACTCAGAGA
GCAGAGAAGCTACAACATGGCTCTAGTGTTGTAATATTTTCTATCAGCACACTGACCTATTCTG
AGGGGGCCATGTTAATTTTATATGATAAACTCCTTCCGTAGTACTTATTATAGTAAAATAACAT
AGAAAACTGACCTATACGAGTGTTAAGAACCTAATATGGCAGATATGAAATATGTAACCAGGAA
AAACTGTTAACATTAAACATCACATTTATGCAAATTAAATGCCCTTAAAATTTTGCCATTCGTC
TTTCATTTTTAAAGGTTATTTGCCCTCAATTATGTAATTTCAGTGTTATAAAGTTTAGCTTAAA
CTACTTTGCAATAATTTATTTGACAGATCTCCGTTCTATAAACCATGCAATGTAATGAGGCCAG
AGATCTTTCTTTTTTAATGAAAACATTAACATGTTAATATCCCACATGAATGATGCTTGACATT
CAACGATTGTCGAAATATGTTGGTATGTTGCTGAACATACACACACCTCTGAAATGCCAGTTCT
GCGTTCTGTGGGCTGATGATCTGACTCATCGTGTGACATATGCTTTCTGGCAGTGAGTTCATTG
CCAGAGTTTAAACAGGGAGTTACGGTGCTCATGGCGCTTTCAGAACCCAAAGATTTGTGGTTTG
GAATCATGTAGTCTAGTATGCTGCACTTATTTTTATATTTTTAATGCACTTAATTATTGTTTTT
ACAATTATTTGTACTAACTCAGCATGTAACAACCAATTTACATGGAAATAAATTGAAATATGAT
AACTACAACTCTCAA

hide sequence

RefSeq Acc Id:

XM_008763531 ⟹ XP_008761753

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	27,884,400 - 28,021,865 (-)	NCBI
Rnor_6.0	5	27,986,656 - 28,131,294 (-)	NCBI

Sequence:

show sequence

CTGGATCCTTCCTGGTTTCATTAGCATAGCCCAGCCCACTTCCACCACACGCCCAGAACTACCT
CATTAACCATTGGGAATGCAGCCAAAAAACATAAGACGACAGTGAATATAAGGAGAATTACTGG
CAAGGGAGCTGTAACCATCTCACCGCCGAACCCATTCCTTTTCCAAGATCAGAAAAGTAGTACA
TGAACAGGGACCCATTTCTTATTGAGATAAGAACTCAAGCTTTGACATTGTAAACCACAGACGG
ATTGGAGCCTGGCATCGAAAGGAGGTGTTCTCCAACGATTTTTTTCTCTCTCCCTTGCCTGAAA
AAGTTGACTACTACAGGAGGGAATCTGAGAAATGACGGGGGCAAAGAGGAAAAAGAGAAGCGTG
CTGTGGGGCAAGATGCACACCCCCCACCGAGAAGACATTAAACAGTGGTGTAAGAGGCGCCTAC
CTATCTTGGAATGGGCACCGCAGTACAATCTGAAGGAAAACCTGCTTCCAGACACCGTGTCTGG
CGTACTGTTGGCAGTTCAACAGGTGACACAAGGGCTGTCCTTCGCTATTCTTTCATCTGTACAC
CCAGTTTTTGGTTTATACGGATCTCTGTTTCCTGCCATCATTTATGCGATATTTGGAATGGGAC
GCCATGTTGCCACAGGCACCTTTGCCTTGACGTCCTTGATATCAGCCAATGCTGTGGAACGGCT
GGTCCCTCAGAGCAATAGAAACCTCACCACACAGAGCAACTCAAGCGTGCTGGGCTTATCGGAG
TTTGAGCTGCAGAGAATCGGGGTTGCAGCAGCCGTTTCATTCTTGGGCGGAGTGATTCAGATCT
ATGCGTATGTTTTTGAGAACATCAAGTCTGTCCAGCTGGAAGCACTGCTCTTGTCCTTGCTGAG
CATTGTTGTCCTTGTCCTCGTTAAAGAGCTGAACGAGCAGTTTAAGAGAAAGATTAAAGTTGTT
CTTCCTGTCGACTTAGTTTTGATCATTGCTGCCTCATTTGCTTGCTATTGTACCAACATGGAAA
ACACATACGGATTAGAAGTAGTTGGGCGCATTCCAAAAGGGATCCCTCCGCCCCGTGCTCCCCC
AATGAACATCCTCTCCGCAGTGCTCACGGAAGCTTTCGGAGTTGCACTTGTAGGCTACGTGGCC
TCGCTGGCTCTCGCACAAGGATCTGCCAAGAAGTTCAAATATTCAGTTGATGACAACCAGGAAT
TTTTGGCCCATGGCCTCAGCAACGTGATTCCTTCATTTCTCTTCTGCATCCCAAGCGCCGCCGC
CATGGGAAGGACAGCTGGTCTGTACAGCACGGGGGCAAAGACACAGGTGGCTTGTCTAATATCT
TGCATTTTCGTCCTTATAGTCATCTATGCAATAGGACCCTTGCTGTACTGGCTGCCCATGTGCG
TTCTTGCAAGTATTATTGTTGTGGGACTGAAAGGAATGTTAATACAGTTCCGGGATTTAAAAAA
ATACTGGAATGTGGATAAAATCGATTGGGGCATATGGATCAGCACTTACATTTTTACAATATGC
TTCGCTGCCAACGTGGGACTGCTCTTTGGTGTTGTCTGCACCATAGCTATCGTGTTAGGGCGTT
TCCCAAGGGCAAAGACTTTAAGCATAACAGACATGAAAGAAATGGAATTGAAGGTGAAGACAGA
AACGTATGATGAAAACTCGCAACAGATAAAAATCATCTCAATAAACAACCCACTTGTTTTCCTG
AATGCAAAGAAATTTAGTGCTGATCTTATGAAAATAATCCTAAAGGAAACTGACGGCAGCCAAG
CACTTGATGATGTCAGCAAGTGTGAACAGAACACCTTGCTCAGTCCCCTGCCCAACGGGAGCTG
CACTGAAGAAGCCTCCCAGCCCTGCCCCAGTGAGAAGTATTCTTTGGTCCTGAATTGCAGTGGC
TTGACCTTTTTCGACTACACAGGAGTCTCCACACTTGTTGAGCTCTACCTTGATTGCAAGAGCA
GGAGTGTGGATGTGTTCTTAGCCAACTGTACAGCATCCTTGATAAAAGCGATGACATACTATGG
AGACCTAGACACTGAAAAACCAATTTTTTTTGACTCGGTAGCCACTGCAATAAGTGTCATCCAA
TCAAATAAGAATTTGAGCAAGGACACTGACCACAGTGAAGTCTGAGGTCCACGCATTGAAATGC
ACATCTCATCTTTAGCACCTGCCCCAAAGAGGCCAGATACTGGCATTTTGCACTCATTTTGGTG
TATATACTGTATATCTCTTAATTAGAATGATGTGAGTTGGCAACTGGATAGCCACTGGCCAAGA
CTTGCTGACATCCTATTTTTTCTAATTTTTCTTAATAAACAGATTCATTAGTTATTTCATATAG
GCATCAATATGCATGTAGCTTTAGTTTAATGAACAGTAAACATGCTTTTATTTCCAGTTATAAG
AGTATTTTGTATGGTTTCATTTTTGTTGTAAGCTAACAAATGGAGAAATATTTTTATCAGAAAT
GGTTTGGATTATTTATAAACCATTCATAAAAAAATTAAGATCATCTAGTACATAAAAAAGTATT
AACAAATGTGCCATTTCTCCATAGTTTTTATCCCAAAATTATTTGAACATCAGTTAGATAAAGT
ATCACTTTTATACAGGGAAAATGAAATCCATAGATATAAAACAAGTGAGAAAGAGACAAATTAG
AAGTTATTAATGTCAATGCCCATCAACACACTCACTCTGACAATATTCATATATTCAATTATGA
GTTCATATTTGGAAGAAAACTAATGTTTTAGCAAAACTAAGTTCTTGATGTTTATCTGCTGAAT
TGTGGATACTGGAGACCATTTGTGTGTTTAATCAGATAACTCTGACTTCTGCATTGCAACACAT
AAGATATTCTGCTTTCAAACTTCTTTCTTGCAATCAGAGAATATGAGAATTTGATATGTATTTT
TTCAAAAATATGCATTTTTCAATGATAAAATATCATAAGTAGAATGCTTTTGTGCTTTTGGATA
CAAGATTAACCCTTAGAAATTTTGAATTTTCTATTTGAGATATAAAAAGTCAACAAAATATAAT
ATGTTATTGATCTATACCAAGATAGATAGATTGAAGATAGAACGACAGACAGACAGACAGAAGA
CAGGTAGACAACAGACAGATGACAGACAGATCTCCAAGGTATGTTTTCCATTTTCTTTTGTTAG
AGATGAGCTTGAATGTGATTATACGTAAATTTGCTAATACAATAGGATAATTTATAACACTAAT
GGCCAGATATAAGTGTAAACATTTTTCATACTTGTATATTTTATTTTTATCTATATACAAGAAT
GAAATTTCACAATTTTTTAAACAAATTGTCTTATATATGAAGCCACAGATTAAATTATGATTTA
TCCTTAATAGCATCTAAAACATTCTACAAAGTTAGTAACGCTGTCAGAAAAAAAAAAAACAAAA
CACAAAAAAAAAAAAAACAGCAAAGGGAGTTTGAAAAGCAAGTTAAAAATTGGCCTTCTGGTGT
GGTTCTTATGGGCATCTGTAAGAGCAAATTCTAACTCCTGTCCAAATGACAGAGTGGAATAGTC
CTTCGCCAGTGCAAGGTAAACATTTACACAATCCACTGTTTTAACACCTCACTCTTTGGCAGGA
TGAAATAATAAGTGAAAACTAAAAATAGCGCTCTAAATTTTCATGGTCATTTTCAATTTTTACT
GAAACAAATTCAAAAGTCTTGTTCCCCCAAATTGCCCCAATTTCTTCATCACTTATTGGGGTAG
TACCAAGTAAGGTGACCAGTATTGCTCATCAGATAGGTTTCTAAGGGAAGTCTGAGGGAGAATT
AGAAAGGAGTTTTATTCTGCGTCATCCACTTCCCTTACTCTATACGTGCAGAGTGGTGGACTCT
ACCTTGTAATCAGGAGTCATGCGAAGCCAAGAAAAGAAATAGATTATGGTGCATAGAAAGTGAT
ATTTTGCTATACAAATTTGACCTTAATTAAATTCATGAGTTGTAGGCATTTTTAATTTGTTGTA
GATGATGGGCCTTGGGTGACATTAAAGTCATTATAGCTATTTGTTGGATAGTTTTTCTGTTTCG
TTGTGAATGCTCAGACAGTATTGTCTGAGAAACTGCATCTGAGTGCATTTAAGTATAAGCTTAA
TGCATAAAAAGTCAACCCCATCAATTTCAGTATCAAACATTGTTACAGCCAAAACAAGAAAGAC
AAGACCACACACTGTATAAAGTCCACTGCTCTATAGTTTATGCCAAGACCACAATCTTTTTAAC
CCAAAGAAAGTCTCTTAATTAAGGTCCAAGGCTCCAAGAACTGCACATAAGTTTTAGACATACA
AGTGTTTATTTCAAAGCAGACTCAGAGAGCAGAGAAGCTACAACATGGCTCTAGTGTTGTAATA
TTTTCTATCAGCACACTGACCTATTCTGAGGGGGCCATGTTAATTTTATATGATAAACTCCTTC
CGTAGTACTTATTATAGTAAAATAACATAGAAAACTGACCTATACGAGTGTTAAGAACCTAATA
TGGCAGATATGAAATATGTAACCAGGAAAAACTGTTAACATTAAACATCACATTTATGCAAATT
AAATGCCCTTAAAATTTTGCCATTCGTCTTTCATTTTTAAAGGTTATTTGCCCTCAATTATGTA
ATTTCAGTGTTATAAAGTTTAGCTTAAACTACTTTGCAATAATTTATTTGACAGATCTCCGTTC
TATAAACCATGCAATGTAATGAGGCCAGAGATCTTTCTTTTTTAATGAAAACATTAACATGTTA
ATATCCCACATGAATGATGCTTGACATTCAACGATTGTCGAAATATGTTGGTATGTTGCTGAAC
ATACACACACCTCTGAAATGCCAGTTCTGCGTTCTGTGGGCTGATGATCTGACTCATCGTGTGA
CATATGCTTTCTGGCAGTGAGTTCATTGCCAGAGTTTAAACAGGGAGTTACGGTGCTCATGGCG
CTTTCAGAACCCAAAGATTTGTGGTTTGGAATCATGTAGTCTAGTATGCTGCACTTATTTTTAT
ATTTTTAATGCACTTAATTATTGTTTTTACAATTATTTGTACTAACTCAGCATGTAACAACCAA
TTTACATGGAAATAAATTGAAATATGATAACTACAACTCTCAA

hide sequence

RefSeq Acc Id:

XM_039109418 ⟹ XP_038965346

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	27,884,400 - 28,021,862 (-)	NCBI

RefSeq Acc Id:

XM_039109419 ⟹ XP_038965347

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	27,884,400 - 28,021,862 (-)	NCBI

RefSeq Acc Id:

XM_039109420 ⟹ XP_038965348

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	27,884,400 - 28,021,864 (-)	NCBI

RefSeq Acc Id:

XM_039109421 ⟹ XP_038965349

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	27,884,400 - 27,998,783 (-)	NCBI

RefSeq Acc Id:

XM_039109422 ⟹ XP_038965350

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	27,884,400 - 27,984,875 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001100108	(Get FASTA)	NCBI Sequence Viewer
	XP_006237973	(Get FASTA)	NCBI Sequence Viewer
	XP_008761753	(Get FASTA)	NCBI Sequence Viewer
	XP_038965346	(Get FASTA)	NCBI Sequence Viewer
	XP_038965347	(Get FASTA)	NCBI Sequence Viewer
	XP_038965348	(Get FASTA)	NCBI Sequence Viewer
	XP_038965349	(Get FASTA)	NCBI Sequence Viewer
	XP_038965350	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL98463	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001100108 ⟸ NM_001106638

- UniProtKB:

D3Z8P6 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MTGAKRKKRSVLWGKMHTPHREDIKQWCKRRLPILEWAPQYNLKENLLPDTVSGVLLAVQQVTQ
GLSFAILSSVHPVFGLYGSLFPAIIYAIFGMGRHVATGTFALTSLISANAVERLVPQSNRNLTT
QSNSSVLGLSEFELQRIGVAAAVSFLGGVIQIYAYVFENIKSVQLEALLLSLLSIVVLVLVKEL
NEQFKRKIKVVLPVDLVLIIAASFACYCTNMENTYGLEVVGRIPKGIPPPRAPPMNILSAVLTE
AFGVALVGYVASLALAQGSAKKFKYSVDDNQEFLAHGLSNVIPSFLFCIPSAAAMGRTAGLYST
GAKTQVACLISCIFVLIVIYAIGPLLYWLPMCVLASIIVVGLKGMLIQFRDLKKYWNVDKIDWG
IWISTYIFTICFAANVGLLFGVVCTIAIVLGRFPRAKTLSITDMKEMELKVKTETYDENSQQIK
IISINNPLVFLNAKKFSADLMKIILKETDGSQALDDVSKCEQNTLLSPLPNGSCTEEASQPCPS
EKYSLVLNCSGLTFFDYTGVSTLVELYLDCKSRSVDVFLANCTASLIKAMTYYGDLDTEKPIFF
DSVATAISVIQSNKNLSKDTDHSEV

hide sequence

RefSeq Acc Id:	XP_006237973 ⟸ XM_006237911
- Peptide Label:	isoform X2
- UniProtKB:	A0A1W2Q610 (UniProtKB/TrEMBL), A0A1W2Q625 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTGAKRKKRSVLWGKMHTPHREDIKQWCKRRLPILEWAPQYNLKENLLPDTVSGVLLAVQQVTQ GLSFAILSSVHPVFGLYGSLFPAIIYAIFGMGRHVATGTFALTSLISANAVERLVPQSNRNLTT QSNSSVLGLSEFELQRIGVAAAVSFLGGVIQLVMFVLQLGNATFLLTEPVISAMTTGAATHVVT SQVKYLLGIKMPYISGPLGFFYIYAYVFENIKSVQLEALLLSLLSIVVLVLVKELNEQFKRKIK VVLPVDLVLIIAASFACYCTNMENTYGLEVVGRIPKGIPPPRAPPMNILSAVLTEAFGVALVGY VASLALAQGSAKKFKYSVDDNQEFLAHGLSNVIPSFLFCIPSAAAMGRTAGLYSTGAKTQVACL ISCIFVLIVIYAIGPLLYWLPMCVLASIIVVGLKGMLIQFRDLKKYWNVDKIDWGIWISTYIFT ICFAANVGLLFGVVCTIAIVLGRFPRAKTLSITDMKEMELKVKTETYDENSQQIKIISINNPLV FLNAKKFSADLMKIILKETDGSQALDDVSKCEQNTLLSPLPNGSCTEEASQPCPSEKYSLVLNC SGLTFFDYTGVSTLVELYLDCKSRSVDVFLANCTASLIKAMTYYGDLDTEKPIFFDSVATAISV IQSNKNLSKDTDHSEV hide sequence

RefSeq Acc Id:	XP_008761753 ⟸ XM_008763531
- Peptide Label:	isoform X4
- UniProtKB:	D3Z8P6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTGAKRKKRSVLWGKMHTPHREDIKQWCKRRLPILEWAPQYNLKENLLPDTVSGVLLAVQQVTQ GLSFAILSSVHPVFGLYGSLFPAIIYAIFGMGRHVATGTFALTSLISANAVERLVPQSNRNLTT QSNSSVLGLSEFELQRIGVAAAVSFLGGVIQIYAYVFENIKSVQLEALLLSLLSIVVLVLVKEL NEQFKRKIKVVLPVDLVLIIAASFACYCTNMENTYGLEVVGRIPKGIPPPRAPPMNILSAVLTE AFGVALVGYVASLALAQGSAKKFKYSVDDNQEFLAHGLSNVIPSFLFCIPSAAAMGRTAGLYST GAKTQVACLISCIFVLIVIYAIGPLLYWLPMCVLASIIVVGLKGMLIQFRDLKKYWNVDKIDWG IWISTYIFTICFAANVGLLFGVVCTIAIVLGRFPRAKTLSITDMKEMELKVKTETYDENSQQIK IISINNPLVFLNAKKFSADLMKIILKETDGSQALDDVSKCEQNTLLSPLPNGSCTEEASQPCPS EKYSLVLNCSGLTFFDYTGVSTLVELYLDCKSRSVDVFLANCTASLIKAMTYYGDLDTEKPIFF DSVATAISVIQSNKNLSKDTDHSEV hide sequence

RefSeq Acc Id:

ENSRNOP00000058989 ⟸ ENSRNOT00000067331

RefSeq Acc Id:

ENSRNOP00000076107 ⟸ ENSRNOT00000093409

RefSeq Acc Id:

ENSRNOP00000076092 ⟸ ENSRNOT00000093186

RefSeq Acc Id:

ENSRNOP00000074966 ⟸ ENSRNOT00000088165

RefSeq Acc Id:	XP_038965348 ⟸ XM_039109420
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038965347 ⟸ XM_039109419
- Peptide Label:	isoform X1
- UniProtKB:	A0A1W2Q610 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038965346 ⟸ XM_039109418
- Peptide Label:	isoform X1
- UniProtKB:	A0A1W2Q610 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038965349 ⟸ XM_039109421
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_038965350 ⟸ XM_039109422
- Peptide Label:	isoform X6

RefSeq Acc Id:

ENSRNOP00000094547 ⟸ ENSRNOT00000106456

Protein Domains

SLC26A/SulP transporter STAS

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A1W2Q610-F1-model_v2	AlphaFold	A0A1W2Q610	1-656	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13693574

Promoter ID:

EPDNEW_R4099

Type:

single initiation site

Name:

Slc26a7_1

Description:

solute carrier family 26 member 7

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	5	28,131,154 - 28,131,214	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1310846	AgrOrtholog
BioCyc Gene	G2FUF-41893	BioCyc
Ensembl Genes	ENSRNOG00000006096	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000058989	ENTREZGENE
	ENSRNOP00000058989.1	UniProtKB/TrEMBL
	ENSRNOP00000076092	ENTREZGENE
	ENSRNOP00000076092.2	UniProtKB/TrEMBL
	ENSRNOP00000076107	ENTREZGENE
	ENSRNOP00000076107.2	UniProtKB/TrEMBL
	ENSRNOP00000094547.1	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000067331	ENTREZGENE
	ENSRNOT00000067331.4	UniProtKB/TrEMBL
	ENSRNOT00000093186	ENTREZGENE
	ENSRNOT00000093186.2	UniProtKB/TrEMBL
	ENSRNOT00000093409	ENTREZGENE
	ENSRNOT00000093409.2	UniProtKB/TrEMBL
	ENSRNOT00000106456.1	UniProtKB/TrEMBL
Gene3D-CATH	3.30.750.24	UniProtKB/TrEMBL
InterPro	SO4_transptr/STAS	UniProtKB/TrEMBL
	STAS_dom_sf	UniProtKB/TrEMBL
	Sul_anion_transpt	UniProtKB/TrEMBL
	Sulph_transpt	UniProtKB/TrEMBL
KEGG Report	rno:297910	UniProtKB/TrEMBL
NCBI Gene	297910	ENTREZGENE
PANTHER	PTHR11814	UniProtKB/TrEMBL
	PTHR11814:SF75	UniProtKB/TrEMBL
Pfam	STAS	UniProtKB/TrEMBL
	Sulfate_transp	UniProtKB/TrEMBL
PhenoGen	Slc26a7	PhenoGen
PROSITE	STAS	UniProtKB/TrEMBL
Superfamily-SCOP	STAS	UniProtKB/TrEMBL
UniProt	A0A1W2Q610	ENTREZGENE, UniProtKB/TrEMBL
	A0A1W2Q625	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AL80_RAT	UniProtKB/TrEMBL
	D3Z8P6	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-02-24	Slc26a7	solute carrier family 26 member 7	Slc26a7	solute carrier family 26 (anion exchanger), member 7	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2013-08-02	Slc26a7	solute carrier family 26 (anion exchanger), member 7	Slc26a7	solute carrier family 26, member 7	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Slc26a7	solute carrier family 26, member 7	Slc26a7_predicted	solute carrier family 26, member 7 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Slc26a7_predicted	solute carrier family 26, member 7 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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