Slc26a7 (solute carrier family 26 member 7) - Rat Genome Database

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Gene: Slc26a7 (solute carrier family 26 member 7) Rattus norvegicus
Analyze
Symbol: Slc26a7
Name: solute carrier family 26 member 7
RGD ID: 1310846
Description: Predicted to have anion transmembrane transporter activity. Predicted to be involved in anion transport and gastric acid secretion. Localizes to basolateral plasma membrane. Orthologous to human SLC26A7 (solute carrier family 26 member 7); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: anion exchange transporter; LOC297910; solute carrier family 26 (anion exchanger), member 7; solute carrier family 26, member 7
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2527,884,400 - 28,021,865 (-)NCBI
Rnor_6.0 Ensembl527,986,663 - 28,177,340 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0527,986,656 - 28,131,294 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0532,676,375 - 32,816,664 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4528,899,539 - 29,035,178 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1528,899,654 - 29,034,843 (-)NCBI
Celera527,155,652 - 27,282,161 (-)NCBICelera
Cytogenetic Map5q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

Additional References at PubMed
PMID:1183472   PMID:11834742   PMID:12736153   PMID:15591059   PMID:16352747   PMID:16524946   PMID:17404755   PMID:18663336   PMID:26671068  


Genomics

Comparative Map Data
Slc26a7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2527,884,400 - 28,021,865 (-)NCBI
Rnor_6.0 Ensembl527,986,663 - 28,177,340 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0527,986,656 - 28,131,294 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0532,676,375 - 32,816,664 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4528,899,539 - 29,035,178 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1528,899,654 - 29,034,843 (-)NCBI
Celera527,155,652 - 27,282,161 (-)NCBICelera
Cytogenetic Map5q13NCBI
SLC26A7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl891,209,494 - 91,398,155 (+)EnsemblGRCh38hg38GRCh38
GRCh38891,209,496 - 91,398,155 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37892,221,724 - 92,410,383 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36892,330,692 - 92,479,554 (+)NCBINCBI36hg18NCBI36
Build 34892,330,691 - 92,476,122NCBI
Celera888,455,583 - 88,604,581 (+)NCBI
Cytogenetic Map8q21.3NCBI
HuRef887,472,771 - 87,621,653 (+)NCBIHuRef
CHM1_1892,262,280 - 92,450,911 (+)NCBICHM1_1
Slc26a7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39414,502,430 - 14,621,946 (-)NCBIGRCm39mm39
GRCm39 Ensembl414,502,430 - 14,621,805 (-)Ensembl
GRCm38414,502,430 - 14,621,946 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl414,502,430 - 14,621,805 (-)EnsemblGRCm38mm10GRCm38
MGSCv37414,432,344 - 14,548,925 (-)NCBIGRCm37mm9NCBIm37
MGSCv36414,432,344 - 14,548,904 (-)NCBImm8
Celera414,304,930 - 14,422,336 (-)NCBICelera
Cytogenetic Map4A1NCBI
Slc26a7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554177,987,835 - 8,127,729 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554177,977,292 - 8,127,241 (+)NCBIChiLan1.0ChiLan1.0
SLC26A7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1889,861,300 - 90,009,899 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl889,861,279 - 90,009,899 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0887,908,807 - 88,057,623 (+)NCBIMhudiblu_PPA_v0panPan3
SLC26A7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12936,616,054 - 36,729,705 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2936,615,676 - 36,726,803 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2936,768,037 - 36,881,698 (+)NCBI
ROS_Cfam_1.02936,817,996 - 36,931,302 (+)NCBI
UMICH_Zoey_3.12936,836,949 - 36,950,596 (+)NCBI
UNSW_CanFamBas_1.02936,818,733 - 36,931,876 (+)NCBI
UU_Cfam_GSD_1.02937,257,966 - 37,371,852 (+)NCBI
Slc26a7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530342,849,303 - 42,949,574 (-)NCBI
SpeTri2.0NW_0049365444,843,156 - 4,943,402 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC26A7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl445,409,866 - 45,637,433 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1445,410,795 - 45,637,500 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2449,029,845 - 49,138,217 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC26A7
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1886,281,314 - 86,454,970 (+)NCBI
ChlSab1.1 Ensembl886,311,373 - 86,454,960 (+)Ensembl
Slc26a7
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624744600,137 - 750,505 (-)NCBI

Position Markers
D5Arb22  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2528,013,259 - 28,013,437 (+)MAPPER
Rnor_6.0528,122,739 - 28,122,916NCBIRnor6.0
Rnor_5.0532,808,069 - 32,808,246UniSTSRnor5.0
RGSC_v3.4529,026,739 - 29,026,917RGDRGSC3.4
RGSC_v3.4529,026,740 - 29,026,917UniSTSRGSC3.4
RGSC_v3.1529,026,739 - 29,026,917RGD
Celera527,273,782 - 27,273,959UniSTS
Cytogenetic Map5q13UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331771Rf35Renal function QTL 354.36965kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)5189432042Rat
1331756Rf34Renal function QTL 344.16275kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)5193273395Rat
70212Niddm25Non-insulin dependent diabetes mellitus QTL 253.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)51136640934Rat
2312562Pur18Proteinuria QTL 182.60.001total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)5152509833001026Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)5152509878720537Rat
8662454Vetf3Vascular elastic tissue fragility QTL 327.4artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)5166658771552720Rat
1300117Hrtrt8Heart rate QTL 83.49heart pumping trait (VT:2000009)heart rate (CMO:0000002)5325132948722188Rat
61462Niddm10Non-insulin dependent diabetes mellitus QTL 103.90.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)5452573847978104Rat
2293666Bmd38Bone mineral density QTL 384.4femur size trait (VT:1000369)femoral neck cortical cross-sectional area (CMO:0001702)5863228553632285Rat
7394712Emca13Estrogen-induced mammary cancer QTL 13mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)59514842103580403Rat
634305Mamtr1Mammary tumor resistance QTL 10.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)512651967117554267Rat
1641903Alcrsp3Alcohol response QTL 3response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)51328888858288888Rat
1600358Mamtr5Mammary tumor resistance QTL 5mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)51884791363847913Rat
1358353Srcrtb2Stress Responsive Cort Basal QTL 23.480.003blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)51884791376608178Rat
8552954Pigfal14Plasma insulin-like growth factor 1 level QTL 149blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)52190436366904363Rat
1549901Neudeg2Neurodegradation QTL 240nervous system integrity trait (VT:0010566)mononuclear cell count (CMO:0002119)52495621244747071Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:335
Count of miRNA genes:205
Interacting mature miRNAs:234
Transcripts:ENSRNOT00000067331
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 8 14
Low 2 6 3 3 63 27 26 3
Below cutoff 1 16 22 8 9 8 4 4 7 1 7 4

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000067331   ⟹   ENSRNOP00000058989
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl527,989,298 - 28,131,133 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000088165   ⟹   ENSRNOP00000074966
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl527,986,663 - 28,164,326 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000093186   ⟹   ENSRNOP00000076092
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl527,987,414 - 28,130,803 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000093409   ⟹   ENSRNOP00000076107
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl528,006,549 - 28,177,340 (-)Ensembl
RefSeq Acc Id: NM_001106638   ⟹   NP_001100108
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2527,887,025 - 28,021,658 (-)NCBI
Rnor_6.0527,989,281 - 28,131,133 (-)NCBI
Rnor_5.0532,676,375 - 32,816,664 (-)NCBI
RGSC_v3.4528,899,539 - 29,035,178 (-)RGD
Celera527,155,652 - 27,282,161 (-)RGD
Sequence:
RefSeq Acc Id: XM_006237911   ⟹   XP_006237973
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2527,884,400 - 28,021,863 (-)NCBI
Rnor_6.0527,986,656 - 28,131,293 (-)NCBI
Rnor_5.0532,676,375 - 32,816,664 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006237912   ⟹   XP_006237974
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0527,986,656 - 28,131,293 (-)NCBI
Rnor_5.0532,676,375 - 32,816,664 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006237913   ⟹   XP_006237975
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0527,986,656 - 28,107,229 (-)NCBI
Rnor_5.0532,676,375 - 32,816,664 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008763530   ⟹   XP_008761752
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0527,986,656 - 28,131,294 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008763531   ⟹   XP_008761753
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2527,884,400 - 28,021,865 (-)NCBI
Rnor_6.0527,986,656 - 28,131,294 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039109418   ⟹   XP_038965346
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2527,884,400 - 28,021,862 (-)NCBI
RefSeq Acc Id: XM_039109419   ⟹   XP_038965347
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2527,884,400 - 28,021,862 (-)NCBI
RefSeq Acc Id: XM_039109420   ⟹   XP_038965348
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2527,884,400 - 28,021,864 (-)NCBI
RefSeq Acc Id: XM_039109421   ⟹   XP_038965349
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2527,884,400 - 27,998,783 (-)NCBI
RefSeq Acc Id: XM_039109422   ⟹   XP_038965350
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2527,884,400 - 27,984,875 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_001100108   ⟸   NM_001106638
- UniProtKB: D3Z8P6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006237974   ⟸   XM_006237912
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006237973   ⟸   XM_006237911
- Peptide Label: isoform X2
- UniProtKB: A0A1W2Q610 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006237975   ⟸   XM_006237913
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_008761752   ⟸   XM_008763530
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_008761753   ⟸   XM_008763531
- Peptide Label: isoform X4
- UniProtKB: D3Z8P6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000058989   ⟸   ENSRNOT00000067331
RefSeq Acc Id: ENSRNOP00000076107   ⟸   ENSRNOT00000093409
RefSeq Acc Id: ENSRNOP00000076092   ⟸   ENSRNOT00000093186
RefSeq Acc Id: ENSRNOP00000074966   ⟸   ENSRNOT00000088165
RefSeq Acc Id: XP_038965348   ⟸   XM_039109420
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038965347   ⟸   XM_039109419
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038965346   ⟸   XM_039109418
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038965349   ⟸   XM_039109421
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038965350   ⟸   XM_039109422
- Peptide Label: isoform X6
Protein Domains
STAS   Sulfate_transp

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693574
Promoter ID:EPDNEW_R4099
Type:single initiation site
Name:Slc26a7_1
Description:solute carrier family 26 member 7
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0528,131,154 - 28,131,214EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHRSP/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Damaging Variants


Assembly: Rnor_5.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
5 32696320 32696321 C G snv KFRS3B/Kyo (KyushuU)


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310846 AgrOrtholog
Ensembl Genes ENSRNOG00000006096 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000058989 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000074966 UniProtKB/TrEMBL
  ENSRNOP00000076092 UniProtKB/TrEMBL
  ENSRNOP00000076107 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000067331 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOT00000088165 UniProtKB/TrEMBL
  ENSRNOT00000093186 UniProtKB/TrEMBL
  ENSRNOT00000093409 UniProtKB/TrEMBL
Gene3D-CATH 3.30.750.24 UniProtKB/TrEMBL
InterPro SLC26A7 UniProtKB/TrEMBL
  SO4_transptr/STAS UniProtKB/TrEMBL
  STAS_dom_sf UniProtKB/TrEMBL
  Sul_anion_transpt UniProtKB/TrEMBL
  Sulph_transpt UniProtKB/TrEMBL
KEGG Report rno:297910 UniProtKB/TrEMBL
NCBI Gene 297910 ENTREZGENE
PANTHER PTHR11814 UniProtKB/TrEMBL
  PTHR11814:SF75 UniProtKB/TrEMBL
Pfam STAS UniProtKB/TrEMBL
  Sulfate_transp UniProtKB/TrEMBL
PhenoGen Slc26a7 PhenoGen
PROSITE STAS UniProtKB/TrEMBL
Superfamily-SCOP STAS UniProtKB/TrEMBL
UniProt A0A0G2K9E4_RAT UniProtKB/TrEMBL
  A0A1W2Q610 ENTREZGENE, UniProtKB/TrEMBL
  A0A1W2Q625_RAT UniProtKB/TrEMBL
  D3Z8P6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-24 Slc26a7  solute carrier family 26 member 7  Slc26a7  solute carrier family 26 (anion exchanger), member 7  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-08-02 Slc26a7  solute carrier family 26 (anion exchanger), member 7  Slc26a7  solute carrier family 26, member 7  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Slc26a7  solute carrier family 26, member 7   Slc26a7_predicted  solute carrier family 26, member 7 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Slc26a7_predicted  solute carrier family 26, member 7 (predicted)      Symbol and Name status set to approved 70820 APPROVED