D5Rat117 Marker Search Result - Rat Genome Database

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Marker: D5Rat117

Symbol: D5Rat117
Previously known as: oxsts7148; R0078-A06; 
RGD ID: 38746
Expected Size: 196 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2553,274,838 - 53,275,044 (-)MAPPERmRatBN7.2
Rnor_6.0555,692,062 - 55,692,269NCBIRnor6.0
Rnor_5.0560,240,018 - 60,240,225UniSTSRnor5.0
RGSC_v3.4555,498,626 - 55,498,834RGDRGSC3.4
RGSC_v3.4555,498,627 - 55,498,834UniSTSRGSC3.4
RGSC_v3.1555,498,805 - 55,499,013RGD
Celera551,945,992 - 51,946,185UniSTS
SHRSP x BN Map533.9399UniSTS
SHRSP x BN Map533.9399RGD
Is Marker For: Strains:   AVN/Orl   BBDP/Rhw   BBDR/Rhw   BC/CpbU   BDIX/Han   BDVII/Cub   BP/Cub   BUF/Pit   DA/PitN   DON/Melb   F344/Pit   FHH/Eur   IS/Kyo   LE/Mol   LEW/Pit   LH/Mav   MHS/Gib   MNRA/N   WN/N   WKY/OlaHsd   WTC/Kyo   LOU/CHan   MNR/N   MR/Pit   ODU/N   WF/Pit   WIST/Nhg   SR/Jr   MNS/Gib   NP9   OKA/Wsl   OM/Ztm   P5C   SD/Rij   SHR/OlaHsd   SHRSP/Riv   WAG/RijKyo   GK/KyoSwe   M520/N   ACI/N   LN/Mav   GH/Omr   NEDH/K   SS/Jr   COP/OlaHsd  


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer AAGATATGCCCAACTCTCAGGA
Reverse Primer TCTCTGGCTTCATTGCCTCT
 
Template 
TAGGATCCCCCTGGNTGATTCCCATCCTGGNTTCTCTCCAGATTTTCCACAGAATTTCTGCTGC
TTGATTTCAAACTAATTCTGACAATTTGTTCTNATGTTGTGTCTCCTTATTCTCTGGCTTCATT
GCCTCTGCTTCAACCTCACTGAACTGTGTGAACTTACTAACAAAATCAACTCTACTGTACTACA
CTCATTGCACTGACTCCAACTCCCAGAACTGCTCTTAAATAACTTGCGTGTGTGTGTGTGTGTG
TGTGTGTGTGTNTGTGTGTGTGTGTGTGTGTATTGACTCCTGAGAGTTGGGCATATCTTNGGGT
ACCGAGCTCGAATTCGTAATCATGGTCATAGCTGTTTCCTGTGTGAAATTGTTATCCGCTCANA
ATTCCACACAACATACGAGCCGGNAGCATNNAGTGTAAAGCCTGGGGTGCTAATGAGTGAGCTA
NCTCACATNAATTGCGNTNGCCATNNCGCTTNNAGNCGGGANANNNTCGTGNAGNT

Region

Nucleotide Sequences
GenBank Nucleotide CH473962 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000235 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information