Atp5po-ps1 (ATP synthase peripheral stalk subunit OSCP, pseudogene 1) - Rat Genome Database

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Gene: Atp5po-ps1 (ATP synthase peripheral stalk subunit OSCP, pseudogene 1) Rattus norvegicus
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Symbol: Atp5po-ps1
Name: ATP synthase peripheral stalk subunit OSCP, pseudogene 1
RGD ID: 1589948
Description:
Type: pseudo
RefSeq Status: MODEL
Previously known as: hypothetical protein LOC689630; LOC689630
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8539,905,081 - 39,905,715 (-)NCBIGRCr8
mRatBN7.2535,108,280 - 35,108,914 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.0535,713,387 - 35,714,021 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0540,368,548 - 40,369,182 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4536,305,207 - 36,305,841 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera534,126,488 - 34,127,122 (-)NCBICelera
Cytogenetic Map5q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Atp5po-ps1
10 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2293666Bmd38Bone mineral density QTL 384.4femur size trait (VT:1000369)femoral neck cortical cross-sectional area (CMO:0001702)5894822853948228Rat
1578776Stresp18Stress response QTL 182.9thymus mass (VT:0004954)thymus wet weight (CMO:0000855)52795544072955440Rat
1298067Scl15Serum cholesterol level QTL 154.80.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)53321566578215665Rat
70212Niddm25Non-insulin dependent diabetes mellitus QTL 253.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)51131345958Rat
1358353Srcrtb2Stress Responsive Cort Basal QTL 23.480.003blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)51887394774251464Rat
1300117Hrtrt8Heart rate QTL 83.49heart pumping trait (VT:2000009)heart rate (CMO:0000002)5384401847869213Rat
634305Mamtr1Mammary tumor resistance QTL 10.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)512789751113558310Rat
1598807Glom12Glomerulus QTL 122.7kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)53321566578215665Rat
1302786Kidm8Kidney mass QTL 828.15kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)53321566578215665Rat
6903292Stl28Serum triglyceride level QTL 282.60.0073blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)52851548973515489Rat
61462Niddm10Non-insulin dependent diabetes mellitus QTL 103.90.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)5511215947171491Rat
1578767Stresp17Stress response QTL 174.30.01blood aldosterone amount (VT:0005346)plasma aldosterone level (CMO:0000551)52795544072955440Rat
1549901Neudeg2Neurodegradation QTL 240nervous system integrity trait (VT:0010566)mononuclear cell count (CMO:0002119)52483871044045280Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
6903306Scl35Serum cholesterol QTL 352.60.0073blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)52851548973515489Rat
1576317Eutr2Estrogen induced uterine response QTL 20.01uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)534730116104251008Rat
7394712Emca13Estrogen-induced mammary cancer QTL 13mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)5982326699753708Rat
1331771Rf35Renal function QTL 354.36965kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)572947086724018Rat
8662454Vetf3Vascular elastic tissue fragility QTL 327.4artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)5228222669540447Rat
2290448Scl54Serum cholesterol level QTL 542.93blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)531663789131345958Rat
1641903Alcrsp3Alcohol response QTL 3response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)51268928557689285Rat
1331756Rf34Renal function QTL 344.16275kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)5190450412Rat
8552954Pigfal14Plasma insulin-like growth factor 1 level QTL 149blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)52122674466226744Rat
2316959Gluco59Glucose level QTL 594.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)534944474113558310Rat
1600358Mamtr5Mammary tumor resistance QTL 5mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)51887394763873947Rat

Markers in Region
RH125676  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2535,108,271 - 35,108,545 (+)MAPPERmRatBN7.2
Rnor_6.0535,713,379 - 35,713,652NCBIRnor6.0
Rnor_5.0540,368,540 - 40,368,813UniSTSRnor5.0
RGSC_v3.4536,305,199 - 36,305,472UniSTSRGSC3.4
Celera534,126,480 - 34,126,753UniSTS
Cytogenetic Map5q21UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
GenBank Nucleotide JAXUCZ010000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-41825 BioCyc
NCBI Gene 689630 ENTREZGENE
PhenoGen Atp5po-ps1 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 Atp5po-ps1  ATP synthase peripheral stalk subunit OSCP, pseudogene 1  LOC689630  hypothetical protein LOC689630  Symbol and Name Changed 1299863 APPROVED
2008-01-09 LOC689630  hypothetical protein LOC689630  LOC681793  hypothetical protein LOC681793  Data merged from RGD:1591613 1643240 APPROVED
2006-11-20 LOC689630  hypothetical protein LOC689630      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-20 LOC681793  hypothetical protein LOC681793      Symbol and Name status set to provisional 70820 PROVISIONAL