Manea (mannosidase, endo-alpha) - Rat Genome Database

Name: Manea
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Manea (mannosidase, endo-alpha) Rattus norvegicus

Analyze

Symbol:

Manea

Name:

mannosidase, endo-alpha

RGD ID:

620327

Description:

Enables alpha-mannosidase activity. Predicted to be active in Golgi membrane. Orthologous to human MANEA (mannosidase endo-alpha); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; acetamide; ammonium chloride.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

endo-alpha mannosidase; endo-alpha-D-mannosidase; endo-alpha-mannosidase; endomannosidase; Enman; glycoprotein endo-alpha-1,2-mannosidase; rEndo

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	MANEA (mannosidase endo-alpha)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Manea (mannosidase, endo-alpha)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Manea (mannosidase endo-alpha)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	MANEA (mannosidase endo-alpha)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	MANEA (mannosidase endo-alpha)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Manea (mannosidase endo-alpha)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	MANEA (mannosidase endo-alpha)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	MANEA (mannosidase endo-alpha)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Manea (mannosidase endo-alpha)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	MANEA (mannosidase endo-alpha)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Manea (mannosidase, endo-alpha)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	manea (mannosidase, endo-alpha)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG14015	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	manea	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	5	40,196,373 - 40,218,534 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	40,196,396 - 40,218,459 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	42,298,331 - 42,311,130 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	5	43,897,348 - 43,910,147 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	5	43,826,581 - 43,839,380 (-)	NCBI	Rnor_WKY
Rnor_6.0	5	40,845,103 - 40,867,025 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	40,844,998 - 40,867,023 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	45,469,290 - 45,491,210 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	41,577,651 - 41,590,456 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	5	41,576,728 - 41,590,474 (-)	NCBI
Celera	5	39,058,787 - 39,071,389 (-)	NCBI		Celera
Cytogenetic Map	5	q21	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Cocaine-Related Disorders (ISO)

genetic disease (ISO)

Paranoid Disorders (ISO)

polycystic ovary syndrome (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

4,4'-sulfonyldiphenol (ISO)

5-fluorouracil (ISO)

acetamide (EXP)

aflatoxin B1 (ISO)

aflatoxin M1 (ISO)

all-trans-retinoic acid (ISO)

ammonium chloride (EXP)

aristolochic acid A (ISO)

atrazine (ISO)

Benoxacor (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

butanal (ISO)

cadmium dichloride (EXP,ISO)

clorgyline (ISO)

cocaine (ISO)

copper(II) sulfate (ISO)

coumestrol (ISO)

cyclosporin A (ISO)

DDT (EXP)

dicrotophos (ISO)

diuron (EXP)

doxorubicin (ISO)

ethanol (ISO)

flavonoids (EXP)

folic acid (ISO)

formaldehyde (ISO)

furan (EXP)

gentamycin (EXP)

hydrogen peroxide (ISO)

methapyrilene (EXP)

methoxyacetic acid (ISO)

methyl methanesulfonate (ISO)

methylmercury chloride (ISO)

miconazole (ISO)

Monobutylphthalate (ISO)

nickel atom (ISO)

paracetamol (EXP,ISO)

perfluorononanoic acid (ISO)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (EXP)

pirinixic acid (EXP)

potassium chromate (ISO)

quercetin (ISO)

resveratrol (ISO)

rotenone (EXP)

sunitinib (ISO)

titanium dioxide (ISO)

triptonide (ISO)

valproic acid (ISO)

vincristine (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

Golgi apparatus (IBA,ISO)

Golgi membrane (ISO)

Molecular Function

alpha-mannosidase activity (IBA,IDA)

glycoprotein endo-alpha-1,2-mannosidase activity (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
3.	GOA pipeline	RGD automated data pipeline
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
5.	Molecular cloning and expression of rat liver endo-alpha-mannosidase, an N-linked oligosaccharide processing enzyme.	Spiro MJ, etal., J Biol Chem 1997 Nov 14;272(46):29356-63.

Additional References at PubMed

PMID:12477932	PMID:15677381	PMID:16871372	PMID:18425413

Genomics

Comparative Map Data

Manea
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	5	40,196,373 - 40,218,534 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	40,196,396 - 40,218,459 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	42,298,331 - 42,311,130 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	5	43,897,348 - 43,910,147 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	5	43,826,581 - 43,839,380 (-)	NCBI	Rnor_WKY
Rnor_6.0	5	40,845,103 - 40,867,025 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	40,844,998 - 40,867,023 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	45,469,290 - 45,491,210 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	41,577,651 - 41,590,456 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	5	41,576,728 - 41,590,474 (-)	NCBI
Celera	5	39,058,787 - 39,071,389 (-)	NCBI		Celera
Cytogenetic Map	5	q21	NCBI

MANEA
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	95,577,535 - 95,609,452 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	6	95,577,485 - 95,609,470 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	6	96,025,411 - 96,057,328 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	96,132,134 - 96,164,047 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	6	96,132,133 - 96,164,047	NCBI
Celera	6	96,666,751 - 96,698,498 (+)	NCBI		Celera
Cytogenetic Map	6	q16.1	NCBI
HuRef	6	93,458,650 - 93,490,603 (+)	NCBI		HuRef
CHM1_1	6	96,287,324 - 96,319,327 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	6	96,748,485 - 96,780,392 (+)	NCBI		T2T-CHM13v2.0

Manea
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	26,324,506 - 26,346,913 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	26,324,506 - 26,346,891 (-)	Ensembl		GRCm39 Ensembl
GRCm38	4	26,324,506 - 26,346,918 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	26,324,506 - 26,346,891 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	26,251,653 - 26,273,799 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	26,415,136 - 26,437,282 (-)	NCBI		MGSCv36	mm8
Celera	4	26,032,320 - 26,054,498 (-)	NCBI		Celera
Cytogenetic Map	4	A3	NCBI

Manea
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955411	21,735,550 - 21,761,750 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955411	21,729,085 - 21,763,684 (+)	NCBI	ChiLan1.0	ChiLan1.0

MANEA
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1	6	113,512,496 - 113,544,257 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	93,428,813 - 93,460,576 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	97,316,022 - 97,347,768 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	97,316,022 - 97,347,768 (+)	Ensembl	panpan1.1		panPan2

MANEA
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	12	54,156,398 - 54,229,183 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	12	54,170,184 - 54,225,013 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	12	53,963,772 - 54,036,664 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	12	54,972,172 - 55,045,434 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	12	54,982,280 - 55,042,970 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	12	54,294,305 - 54,367,550 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	12	54,169,174 - 54,241,745 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	12	54,371,139 - 54,444,695 (+)	NCBI		UU_Cfam_GSD_1.0

Manea
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	88,721,181 - 88,752,631 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936699	1,975,362 - 2,006,932 (-)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936699	1,975,391 - 2,006,816 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

MANEA
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	62,887,881 - 62,945,583 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	62,887,689 - 62,945,586 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	71,027,088 - 71,084,858 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

MANEA
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	13	20,496,677 - 20,529,201 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	13	20,496,686 - 20,530,819 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666040	196,752,522 - 196,783,748 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Manea
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624810	9,961,154 - 9,998,835 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Manea
51 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	644
Count of miRNA genes:	286
Interacting mature miRNAs:	368
Transcripts:	ENSRNOT00000011576
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1331756	Rf34	Renal function QTL 34	4.16275		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	5	1	90450412	Rat
70212	Niddm25	Non-insulin dependent diabetes mellitus QTL 25	3.54		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	1	131345958	Rat
1331771	Rf35	Renal function QTL 35	4.36965		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	5	729470	86724018	Rat
1576314	Eutr1	Estrogen induced uterine response QTL 1			uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	2138965	166875058	Rat
8662454	Vetf3	Vascular elastic tissue fragility QTL 3	27.4		artery integrity trait (VT:0010639)	number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)	5	2282226	69540447	Rat
1300117	Hrtrt8	Heart rate QTL 8	3.49		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	5	3844018	47869213	Rat
61462	Niddm10	Non-insulin dependent diabetes mellitus QTL 10	3.9	0.001	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	5	5112159	47171491	Rat
2293666	Bmd38	Bone mineral density QTL 38	4.4		femur size trait (VT:1000369)	femoral neck cortical cross-sectional area (CMO:0001702)	5	8948228	53948228	Rat
7394712	Emca13	Estrogen-induced mammary cancer QTL 13			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	9823266	99753708	Rat
1641903	Alcrsp3	Alcohol response QTL 3			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	5	12689285	57689285	Rat
634305	Mamtr1	Mammary tumor resistance QTL 1		0.0001	mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	12789751	113558310	Rat
1600358	Mamtr5	Mammary tumor resistance QTL 5			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	18873947	63873947	Rat
1358353	Srcrtb2	Stress Responsive Cort Basal QTL 2	3.48	0.003	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	5	18873947	74251464	Rat
8552954	Pigfal14	Plasma insulin-like growth factor 1 level QTL 14	9		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	21226744	66226744	Rat
1549901	Neudeg2	Neurodegradation QTL 2	4	0	nervous system integrity trait (VT:0010566)	mononuclear cell count (CMO:0002119)	5	24838710	44045280	Rat
1578767	Stresp17	Stress response QTL 17	4.3	0.01	blood aldosterone amount (VT:0005346)	plasma aldosterone level (CMO:0000551)	5	27955440	72955440	Rat
1578776	Stresp18	Stress response QTL 18	2.9		thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	5	27955440	72955440	Rat
6903292	Stl28	Serum triglyceride level QTL 28	2.6	0.0073	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	5	28515489	73515489	Rat
6903306	Scl35	Serum cholesterol QTL 35	2.6	0.0073	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	28515489	73515489	Rat
2290448	Scl54	Serum cholesterol level QTL 54	2.93		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	31663789	131345958	Rat
1598807	Glom12	Glomerulus QTL 12	2.7		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	5	33215665	78215665	Rat
1298067	Scl15	Serum cholesterol level QTL 15	4.8	0.001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	33215665	78215665	Rat
1302786	Kidm8	Kidney mass QTL 8	28.15		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	5	33215665	78215665	Rat
1576317	Eutr2	Estrogen induced uterine response QTL 2		0.01	uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	34730116	104251008	Rat
2316959	Gluco59	Glucose level QTL 59	4.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	34944474	113558310	Rat
1641922	Alcrsp8	Alcohol response QTL 8			alcohol metabolism trait (VT:0015089)	blood ethanol level (CMO:0000535)	5	35189153	68564008	Rat
1641912	Alcrsp18	Alcohol response QTL 18			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	5	35189153	141643988	Rat
1549845	Scl44	Serum cholesterol level QTL 44	6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	40128307	148607290	Rat

Markers in Region

RH135326

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	40,197,099 - 40,197,304 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	40,845,590 - 40,845,794	NCBI	Rnor6.0
Rnor_5.0	5	45,469,777 - 45,469,981	UniSTS	Rnor5.0
RGSC_v3.4	5	41,575,412 - 41,575,616	UniSTS	RGSC3.4
Celera	5	39,056,548 - 39,056,752	UniSTS
RH 3.4 Map	5	216.9	UniSTS
Cytogenetic Map	5	q21	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	2	16	20	18	4	18			74	28	34	11
Low	1	27	37	23	15	23	8	10		7	7		8
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_080785	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006237960	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006237961	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AY599499	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC161805	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473962	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ223109	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000161	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000011576 ⟹ ENSRNOP00000011576

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	40,196,396 - 40,218,459 (-)	Ensembl
Rnor_6.0 Ensembl	5	40,844,998 - 40,867,023 (-)	Ensembl

RefSeq Acc Id:

NM_080785 ⟹ NP_542963

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	40,199,339 - 40,212,144 (-)	NCBI
Rnor_6.0	5	40,847,829 - 40,860,634 (-)	NCBI
Rnor_5.0	5	45,469,290 - 45,491,210 (-)	NCBI
RGSC_v3.4	5	41,577,651 - 41,590,456 (-)	RGD
Celera	5	39,058,787 - 39,071,389 (-)	RGD

Sequence:

show sequence

ATGGCAAAATTCCGAAGAAGGACCTGCATCATTTTGTCACTTTTTATTGTATTTATTTTCTCTC
TGATGATGGGCTTAAAGATGCTGTGGCCAAACGCAGCATCCTTTGGACCTCCGTTTGGACTTGA
CCTCCTTCCAGAACTCCGTCCACCGAATACCCACTTGGAAAACAAAGCCGACTTCCAAAGGAGT
GATCGAATCGACATGGAAACAAACACCAAGGATTTGAAAGGGGCTGGTGTGACTGTGCACCCAC
CCAGAGCCTCTGAGGTGAACCTGGAAGAACTGCCTCCACTGAACTATTTTGTACATGCATTTTA
TTACAGTTGGTATGGAAACCCACAGTTCGATGGTAAATACGTACACTGGAACCATCCAGTCCTG
GAACACTGGGACCCTAGAATAGCCAAGAACTATCCACAAGGAAGACATAGTCCTCCAGATGACA
TTGGCTCCAGTTTTTATCCTGAGTTAGGAAGTTACAGCTCCCGAGACCCTTCTGTCATAGAAAC
TCACATGAAACAAATGCGCTCAGCCTCCATTGGAGTACTGGCCCTGTCTTGGTACCCACCTGAT
GCAAGTGACGAGAATGGAGAAGCTACTGATTACTTGGTACCAACTATTTTGGATAAAGCTCATA
AATATAATCTGAAGGTCACTTTTCACATAGAACCATATAGCAATCGAGATGACCAAAACATGCA
TCAAAATGTGAAGTATATTATAGACAAGTATGGAAACCATCCAGCCTTTTATAGGTACAAGACC
AGGATGGGGCATTCTCTACCCATGTTTTATATCTATGATTCTTATATCACAAAGCCTAAAACAT
GGGCCAATCTATTAACACCCTCAGGATCTCAGAGTGTTCGCGGTTCTCCTTATGATGGCTTGTT
TATTGCACTTCTAGTAGAAGAAAAGCATAAATACGATATTCTTCAAAGTGGTTTTGATGGAATT
TACACATATTTTGCCACAAATGGCTTTACATATGGCTCATCTCATCAGAATTGGAATAAACTGA
AATCATTTTGTGAAAAGAACAACATGATATTTATCCCAAGTGTAGGCCCAGGATACATAGATAC
AAGCATCCGTCCATGGAACACTCAGAACACCCGGAACAGAATCAATGGGAAATATTATGAAGTT
GGACTAAGCGCTGCACTCCAGACCCAGCCCAGTTTAATCTCCATCACCTCTTTCAATGAGTGGC
ATGAAGGGACTCAAATCGAAAAGGCTGTCCCCAAAAGAACTGCTAACACGGTATACCTGGATTA
CCGGCCTCATAAGCCAAGTCTTTACCTAGAAATAACTCGAAAATGGTCTGAAAAATACAGTAAG
GAAAGAATGACGTATGCATTGGATCAACAGCTGCCTGCTTCATAA

hide sequence

RefSeq Acc Id:

XM_006237960 ⟹ XP_006238022

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	40,196,373 - 40,218,534 (-)	NCBI
Rnor_6.0	5	40,845,103 - 40,867,025 (-)	NCBI
Rnor_5.0	5	45,469,290 - 45,491,210 (-)	NCBI

Sequence:

show sequence

CCGCGCTGTCCTTTGGGAGGCGGGACTTTGGGGCCTGTGGCGAGCACTGTCAGCGATAACAGAA
CTCGCGATTCTTTCGGCCAGACGCGGGTTAGCAGTTGGGTGGTCCCGGTGCCAAGGCCCACAGG
GACTCCGCAGCTATCACCTGCGTGCTTGCCCGTCAGCCAATCGTGGGCCCCCTGACTGCGGCAC
CCTTTGACCCCGGGCCTTCAGGAATCCAGTCCCGCTCAGCCCAGCAGCCCGGCTCCGCGCCGGT
CCCCGCCTCTAGCAAAGCGTTTACTAGATTGGAGTGTAAAGTATGTCATCATGGCAAAATTCCG
AAGAAGGACCTGCATCATTTTGTCACTTTTTATTGTATTTATTTTCTCTCTGATGATGGGCTTA
AAGATGCTGTGGCCAAACGCAGCATCCTTTGGACCTCCGTTTGGACTTGACCTCCTTCCAGAAC
TCCGTCCACCGAATACCCACTTGGAAAACAAAGCCGACTTCCAAAGGAGTGATCGAATCGACAT
GGAAACAAACACCAAGGATTTGAAAGGGGCTGGTGTGACTGTGCACCCACCCAGAGCCTCTGAG
GTGAACCTGGAAGAACTGCCTCCACTGAACTATTTTGTACATGCATTTTATTACAGTTGGTATG
GAAACCCACAGTTCGATGGTAAATACGTACACTGGAACCATCCAGTCCTGGAACACTGGGACCC
TAGAATAGCCAAGAACTATCCACAAGGAAGACATAGTCCTCCAGATGACATTGGCTCCAGTTTT
TATCCTGAGTTAGGAAGTTACAGCTCCCGAGACCCTTCTGTCATAGAAACTCACATGAAACAAA
TGCGCTCAGCCTCCATTGGAGTACTGGCCCTGTCTTGGTACCCACCTGATGCAAGTGACGAGAA
TGGAGAAGCTACTGATTACTTGGTACCAACTATTTTGGATAAAGCTCATAAATATAATCTGAAG
GTCACTTTTCACATAGAACCATATAGCAATCGAGATGACCAAAACATGCATCAAAATGTGAAGT
ATATTATAGACAAGTATGGAAACCATCCAGCCTTTTATAGGTACAAGACCAGGATGGGGCATTC
TCTACCCATGTTTTATATCTATGATTCTTATATCACAAAGCCTAAAACATGGGCCAATCTATTA
ACACCCTCAGGATCTCAGAGTGTTCGCGGTTCTCCTTATGATGGCTTGTTTATTGCACTTCTAG
TAGAAGAAAAGCATAAATACGATATTCTTCAAAGTGGTTTTGATGGAATTTACACATATTTTGC
CACAAATGGCTTTACATATGGCTCATCTCATCAGAATTGGAATAAACTGAAATCATTTTGTGAA
AAGAACAACATGATATTTATCCCAAGTGTAGGCCCAGGATACATAGATACAAGCATCCGTCCAT
GGAACACTCAGAACACCCGGAACAGAATCAATGGGAAATATTATGAAGTTGGACTAAGCGCTGC
ACTCCAGACCCAGCCCAGTTTAATCTCCATCACCTCTTTCAATGAGTGGCATGAAGGGACTCAA
ATCGAAAAGGCTGTCCCCAAAAGAACTGCTAACACGGTATACCTGGATTACCGGCCTCATAAGC
CAAGTCTTTACCTAGAAATAACTCGAAAATGGTCTGAAAAATACAGTAAGGAAAGAATGACGTA
TGCATTGGATCAACAGCTGCCTGCTTCATAATGTACCTCTTATAGTCTGTCAAGACTCCTAGCT
TCAGTCAACACACTATATTATGAGCTATGAAAACTGTCAAAATCAATGTGTGCTTGCTACTGTA
ACCTTTATCAGTTATTTCATTTTTACTTTTTAAAAGATTCATTTTTCTACAATGGACAGTACCT
TACAGAAACATCTAACAAGATAAGTTCTGTCAGTAACATTCCTGATGGTATAGTTTTCTGAATT
TCTGACTATTATTGAAATCTTAATGGAGTTGCCTTGTTTTTGTTTCACATTAAGAAAATGATTG
TATTACATTACAAAAAGCAGCTAACAGCTAATGTTCAGGTAAGTCATACTTGTATTCTGGGTCC
AAAGACATAGGAGTATGTACATGTTAGGTACATCTGGCAACAGAAGTTCAGACCTAAAGGACAG
TAAGTGAATGTGCTTCATTTCTGGACTCTTTGGTGAAGTTTGTTAATATTCAGAGTCTGGTTGG
CTTCCCCTGGTGATCCAGCTCACTTTTCAAGTTTGTTGTGAACACAGACCTGTTTAAGTAAAAA
GTCCTTTTATCACATTTTTCTGTTTCTGTTAGCCATGGTCTGTTGAAGAATGCCTGTGTAGGCA
TCCATCAGTGTCAGTGTTCGAAGACTCGGGTGCCTATGGTGCTAAGTGCTTTTGCATGTTGAAT
GCTCCTGGATTGTTCTGCTGAACTAAAAACTAGAAACAATAGGTAGTTTGTTAAATGTTCATGA
CTGTTTCTAATATATGAGAAAAATAATTGTTTAAGAGTGGTTAAAATTTAATGTTCACCAGAGA
CTACTGAACGGACTTTGAAAGGATAATGTTAATACTCAAAAGTGTTTTCCTTTCAATATTTTAA
TTTAATTTTACTGTAATACAGAAAATTTGCATATCACTTCAAAAATAGAGATACTTTTAAAGTA
ACATCATGTATTTCAGTAATGTCCTCACTTTAATGTCTTACCCTTATATAGTGGCTATTGGTTT
AAAAAGAAAGTTAAGTTAGTGATCCATAGCTGTCAAGTGGTTACAAATTGGTAAGTTCTATGCT
AAAAATAAATTTTTGTAAAAAGTGAAAATAAAAATTGACTGAATTCAATATTTATAATTAAAAT
AGAAAAAAACAGCCCAGCTAGTATACATAATTTTACACAACTGTTATTTCTTAGTTCTACAGCG
AGAATCATTTAAGTAACACTAACAAGCATGCCTGTCTTCATAGCCTATAGACATTGAGAAACAA
GTAAGTTCTGGAATTTATCTTAAAATACAGAGCAGAGAGGACACAGCTTGATGGTAAGGGTGAG
TGATATGTGAGAAAAGTTCTTGTTGTGCAAGTATGAGGGCCTGAGTCTGAACACCTAGAACTCA
CATAAACATGAGCTCAGTAGCATACATGTTTTATTCCACAGCTCCTGCAGTGTAGACAAGACAG
AGCCCAGGAGTGTAGGAACCAGTTAGCCTTCTGTAGGTAGCAGCAAAGAAGAGATCCTGTCTCA
AACATGGTGGGAAGCAAAGGTCAACAGGCAAGGTCACTTGGACATTCAAACCCACCTCATGTCA
TATTCAGTCTCCCTCTTACTCTTGAATGTTTGCAGATACCCACACAGAGCTTTTTTAAGACTTA
TTTTTAAAATAATGCTTGTAGACTAAAGTGTTTTTCAGGAGTTACACTAACTTTATTAAATTAA
AATTTTCTATTTGTAAGAAAATTCTTAGGACATAAAAATTATGAGAATAATAGTCTGATTTTTC
CAGATAAATTGTAAGAATGATTAAGTGTAATATTTTGATATTACACATCTCCATTGGAATAAGG
AGAAATATAACCTATAGATTTTTTTCTTTGCTTTGCTACTACATTAAAGCTAATTATCAATACA
TAGTTATATAGTATATGTTGTTTTCTTCATTCTTTATATTGCATTTTATATTTGAGTCCACCAT
GACAAAAAGTGGATGTTATGAAACAATTCTGATATTAAGAAACAGTCTGCGAAAATAAGATCAA
GCAACTGTCAGTAAGAACTTTCACAGCAGACAGCTCACCCTAGCTGTTCCCAGTACTTCTCCAC
CCCATCAGTAGTCAGAACTTAAAATTAGACAGATGCTATCTTTAAAGAATGTCTGTCTAACAAA
TCACTGAGCTATCTTTTCATAAGAATTACTAGTTGATAATTATATAAATAACCATAGTCACCTC
TGTGGTTTCCACAACCAAATATTCAGCCAACTAAGGATCAAAATACTTGGGAACAAAAGTCCAT
TTGTATATAACAAACATGTTTAGTGTGTTTCCATCCCATAAGCCAGATAGTATAACTACCATTT
ATATTTTTCTAGGTATTATAAATAAGCTGAGAGAGTTTAAAGTATACCTGAAGATCATTGTGTG
GTATATTCCAATCCGGTTCCATTTTTTAAAGGAACCTAAGCATATTCAGCCGTTTTTACCTGTG
CACCCTAAAGCCAGTTCCACACAAATACCAACGGAGTGCTATATTCCCAACATTGCTAGTGACT
GTTAGAGGATGCCTTCAGAGCCTCTTTCCTGAGTGTCCTTTACCTCTGCTGTCTGACTGGAAAC
ACAGCTAGAATTACAATGATCACAAGTAAATCTCAACAAATGATCCCATTCTTTTGTAAATCTG
AAATGTTAGAATCCAGTAAACTTAAAGATGTATAATATGTGTAATGCATGAATTAGAATCAGAT
TTTTA

hide sequence

RefSeq Acc Id:

XM_006237961 ⟹ XP_006238023

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	40,196,373 - 40,218,251 (-)	NCBI
Rnor_6.0	5	40,845,103 - 40,866,751 (-)	NCBI
Rnor_5.0	5	45,469,290 - 45,491,210 (-)	NCBI

Sequence:

show sequence

GTCTGCACCCCGCCCGAATCTGCCCTTGCCTGGCTGCCCAAGTTTGCCCTGAGGCGGTTCCTCA
CGCCTGGTCCTGAGCCCCGAACCTGCGAGTGGCTGTGGAGGCCCCTGGCAGACTCTGGACCCGG
CCGTCTCCTAGCCCAGCTTGCGACCCGAAGGCCGCCAGGACAAGTGCATCCTCTGAGCAAAGCG
TTTACTAGATTGGAGTGTAAAGTATGTCATCATGGCAAAATTCCGAAGAAGGACCTGCATCATT
TTGTCACTTTTTATTGTATTTATTTTCTCTCTGATGATGGGCTTAAAGATGCTGTGGCCAAACG
CAGCATCCTTTGGACCTCCGTTTGGACTTGACCTCCTTCCAGAACTCCGTCCACCGAATACCCA
CTTGGAAAACAAAGCCGACTTCCAAAGGAGTGATCGAATCGACATGGAAACAAACACCAAGGAT
TTGAAAGGGGCTGGTGTGACTGTGCACCCACCCAGAGCCTCTGAGGTGAACCTGGAAGAACTGC
CTCCACTGAACTATTTTGTACATGCATTTTATTACAGTTGGTATGGAAACCCACAGTTCGATGG
TAAATACGTACACTGGAACCATCCAGTCCTGGAACACTGGGACCCTAGAATAGCCAAGAACTAT
CCACAAGGAAGACATAGTCCTCCAGATGACATTGGCTCCAGTTTTTATCCTGAGTTAGGAAGTT
ACAGCTCCCGAGACCCTTCTGTCATAGAAACTCACATGAAACAAATGCGCTCAGCCTCCATTGG
AGTACTGGCCCTGTCTTGGTACCCACCTGATGCAAGTGACGAGAATGGAGAAGCTACTGATTAC
TTGGTACCAACTATTTTGGATAAAGCTCATAAATATAATCTGAAGGTCACTTTTCACATAGAAC
CATATAGCAATCGAGATGACCAAAACATGCATCAAAATGTGAAGTATATTATAGACAAGTATGG
AAACCATCCAGCCTTTTATAGGTACAAGACCAGGATGGGGCATTCTCTACCCATGTTTTATATC
TATGATTCTTATATCACAAAGCCTAAAACATGGGCCAATCTATTAACACCCTCAGGATCTCAGA
GTGTTCGCGGTTCTCCTTATGATGGCTTGTTTATTGCACTTCTAGTAGAAGAAAAGCATAAATA
CGATATTCTTCAAAGTGGTTTTGATGGAATTTACACATATTTTGCCACAAATGGCTTTACATAT
GGCTCATCTCATCAGAATTGGAATAAACTGAAATCATTTTGTGAAAAGAACAACATGATATTTA
TCCCAAGTGTAGGCCCAGGATACATAGATACAAGCATCCGTCCATGGAACACTCAGAACACCCG
GAACAGAATCAATGGGAAATATTATGAAGTTGGACTAAGCGCTGCACTCCAGACCCAGCCCAGT
TTAATCTCCATCACCTCTTTCAATGAGTGGCATGAAGGGACTCAAATCGAAAAGGCTGTCCCCA
AAAGAACTGCTAACACGGTATACCTGGATTACCGGCCTCATAAGCCAAGTCTTTACCTAGAAAT
AACTCGAAAATGGTCTGAAAAATACAGTAAGGAAAGAATGACGTATGCATTGGATCAACAGCTG
CCTGCTTCATAATGTACCTCTTATAGTCTGTCAAGACTCCTAGCTTCAGTCAACACACTATATT
ATGAGCTATGAAAACTGTCAAAATCAATGTGTGCTTGCTACTGTAACCTTTATCAGTTATTTCA
TTTTTACTTTTTAAAAGATTCATTTTTCTACAATGGACAGTACCTTACAGAAACATCTAACAAG
ATAAGTTCTGTCAGTAACATTCCTGATGGTATAGTTTTCTGAATTTCTGACTATTATTGAAATC
TTAATGGAGTTGCCTTGTTTTTGTTTCACATTAAGAAAATGATTGTATTACATTACAAAAAGCA
GCTAACAGCTAATGTTCAGGTAAGTCATACTTGTATTCTGGGTCCAAAGACATAGGAGTATGTA
CATGTTAGGTACATCTGGCAACAGAAGTTCAGACCTAAAGGACAGTAAGTGAATGTGCTTCATT
TCTGGACTCTTTGGTGAAGTTTGTTAATATTCAGAGTCTGGTTGGCTTCCCCTGGTGATCCAGC
TCACTTTTCAAGTTTGTTGTGAACACAGACCTGTTTAAGTAAAAAGTCCTTTTATCACATTTTT
CTGTTTCTGTTAGCCATGGTCTGTTGAAGAATGCCTGTGTAGGCATCCATCAGTGTCAGTGTTC
GAAGACTCGGGTGCCTATGGTGCTAAGTGCTTTTGCATGTTGAATGCTCCTGGATTGTTCTGCT
GAACTAAAAACTAGAAACAATAGGTAGTTTGTTAAATGTTCATGACTGTTTCTAATATATGAGA
AAAATAATTGTTTAAGAGTGGTTAAAATTTAATGTTCACCAGAGACTACTGAACGGACTTTGAA
AGGATAATGTTAATACTCAAAAGTGTTTTCCTTTCAATATTTTAATTTAATTTTACTGTAATAC
AGAAAATTTGCATATCACTTCAAAAATAGAGATACTTTTAAAGTAACATCATGTATTTCAGTAA
TGTCCTCACTTTAATGTCTTACCCTTATATAGTGGCTATTGGTTTAAAAAGAAAGTTAAGTTAG
TGATCCATAGCTGTCAAGTGGTTACAAATTGGTAAGTTCTATGCTAAAAATAAATTTTTGTAAA
AAGTGAAAATAAAAATTGACTGAATTCAATATTTATAATTAAAATAGAAAAAAACAGCCCAGCT
AGTATACATAATTTTACACAACTGTTATTTCTTAGTTCTACAGCGAGAATCATTTAAGTAACAC
TAACAAGCATGCCTGTCTTCATAGCCTATAGACATTGAGAAACAAGTAAGTTCTGGAATTTATC
TTAAAATACAGAGCAGAGAGGACACAGCTTGATGGTAAGGGTGAGTGATATGTGAGAAAAGTTC
TTGTTGTGCAAGTATGAGGGCCTGAGTCTGAACACCTAGAACTCACATAAACATGAGCTCAGTA
GCATACATGTTTTATTCCACAGCTCCTGCAGTGTAGACAAGACAGAGCCCAGGAGTGTAGGAAC
CAGTTAGCCTTCTGTAGGTAGCAGCAAAGAAGAGATCCTGTCTCAAACATGGTGGGAAGCAAAG
GTCAACAGGCAAGGTCACTTGGACATTCAAACCCACCTCATGTCATATTCAGTCTCCCTCTTAC
TCTTGAATGTTTGCAGATACCCACACAGAGCTTTTTTAAGACTTATTTTTAAAATAATGCTTGT
AGACTAAAGTGTTTTTCAGGAGTTACACTAACTTTATTAAATTAAAATTTTCTATTTGTAAGAA
AATTCTTAGGACATAAAAATTATGAGAATAATAGTCTGATTTTTCCAGATAAATTGTAAGAATG
ATTAAGTGTAATATTTTGATATTACACATCTCCATTGGAATAAGGAGAAATATAACCTATAGAT
TTTTTTCTTTGCTTTGCTACTACATTAAAGCTAATTATCAATACATAGTTATATAGTATATGTT
GTTTTCTTCATTCTTTATATTGCATTTTATATTTGAGTCCACCATGACAAAAAGTGGATGTTAT
GAAACAATTCTGATATTAAGAAACAGTCTGCGAAAATAAGATCAAGCAACTGTCAGTAAGAACT
TTCACAGCAGACAGCTCACCCTAGCTGTTCCCAGTACTTCTCCACCCCATCAGTAGTCAGAACT
TAAAATTAGACAGATGCTATCTTTAAAGAATGTCTGTCTAACAAATCACTGAGCTATCTTTTCA
TAAGAATTACTAGTTGATAATTATATAAATAACCATAGTCACCTCTGTGGTTTCCACAACCAAA
TATTCAGCCAACTAAGGATCAAAATACTTGGGAACAAAAGTCCATTTGTATATAACAAACATGT
TTAGTGTGTTTCCATCCCATAAGCCAGATAGTATAACTACCATTTATATTTTTCTAGGTATTAT
AAATAAGCTGAGAGAGTTTAAAGTATACCTGAAGATCATTGTGTGGTATATTCCAATCCGGTTC
CATTTTTTAAAGGAACCTAAGCATATTCAGCCGTTTTTACCTGTGCACCCTAAAGCCAGTTCCA
CACAAATACCAACGGAGTGCTATATTCCCAACATTGCTAGTGACTGTTAGAGGATGCCTTCAGA
GCCTCTTTCCTGAGTGTCCTTTACCTCTGCTGTCTGACTGGAAACACAGCTAGAATTACAATGA
TCACAAGTAAATCTCAACAAATGATCCCATTCTTTTGTAAATCTGAAATGTTAGAATCCAGTAA
ACTTAAAGATGTATAATATGTGTAATGCATGAATTAGAATCAGATTTTTA

hide sequence

Protein Sequences


Protein RefSeqs	NP_542963	(Get FASTA)	NCBI Sequence Viewer
	XP_006238022	(Get FASTA)	NCBI Sequence Viewer
	XP_006238023	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAT44962	(Get FASTA)	NCBI Sequence Viewer
	EDL98547	(Get FASTA)	NCBI Sequence Viewer
	Q5GF25	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_542963 ⟸ NM_080785

- UniProtKB:

O35390 (UniProtKB/Swiss-Prot), Q5GF25 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MAKFRRRTCIILSLFIVFIFSLMMGLKMLWPNAASFGPPFGLDLLPELRPPNTHLENKADFQRS
DRIDMETNTKDLKGAGVTVHPPRASEVNLEELPPLNYFVHAFYYSWYGNPQFDGKYVHWNHPVL
EHWDPRIAKNYPQGRHSPPDDIGSSFYPELGSYSSRDPSVIETHMKQMRSASIGVLALSWYPPD
ASDENGEATDYLVPTILDKAHKYNLKVTFHIEPYSNRDDQNMHQNVKYIIDKYGNHPAFYRYKT
RMGHSLPMFYIYDSYITKPKTWANLLTPSGSQSVRGSPYDGLFIALLVEEKHKYDILQSGFDGI
YTYFATNGFTYGSSHQNWNKLKSFCEKNNMIFIPSVGPGYIDTSIRPWNTQNTRNRINGKYYEV
GLSAALQTQPSLISITSFNEWHEGTQIEKAVPKRTANTVYLDYRPHKPSLYLEITRKWSEKYSK
ERMTYALDQQLPAS

hide sequence

RefSeq Acc Id:	XP_006238022 ⟸ XM_006237960
- Peptide Label:	isoform X1
- UniProtKB:	Q5GF25 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MAKFRRRTCIILSLFIVFIFSLMMGLKMLWPNAASFGPPFGLDLLPELRPPNTHLENKADFQRS DRIDMETNTKDLKGAGVTVHPPRASEVNLEELPPLNYFVHAFYYSWYGNPQFDGKYVHWNHPVL EHWDPRIAKNYPQGRHSPPDDIGSSFYPELGSYSSRDPSVIETHMKQMRSASIGVLALSWYPPD ASDENGEATDYLVPTILDKAHKYNLKVTFHIEPYSNRDDQNMHQNVKYIIDKYGNHPAFYRYKT RMGHSLPMFYIYDSYITKPKTWANLLTPSGSQSVRGSPYDGLFIALLVEEKHKYDILQSGFDGI YTYFATNGFTYGSSHQNWNKLKSFCEKNNMIFIPSVGPGYIDTSIRPWNTQNTRNRINGKYYEV GLSAALQTQPSLISITSFNEWHEGTQIEKAVPKRTANTVYLDYRPHKPSLYLEITRKWSEKYSK ERMTYALDQQLPAS hide sequence

RefSeq Acc Id:	XP_006238023 ⟸ XM_006237961
- Peptide Label:	isoform X1
- UniProtKB:	O35390 (UniProtKB/Swiss-Prot), Q5GF25 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MAKFRRRTCIILSLFIVFIFSLMMGLKMLWPNAASFGPPFGLDLLPELRPPNTHLENKADFQRS DRIDMETNTKDLKGAGVTVHPPRASEVNLEELPPLNYFVHAFYYSWYGNPQFDGKYVHWNHPVL EHWDPRIAKNYPQGRHSPPDDIGSSFYPELGSYSSRDPSVIETHMKQMRSASIGVLALSWYPPD ASDENGEATDYLVPTILDKAHKYNLKVTFHIEPYSNRDDQNMHQNVKYIIDKYGNHPAFYRYKT RMGHSLPMFYIYDSYITKPKTWANLLTPSGSQSVRGSPYDGLFIALLVEEKHKYDILQSGFDGI YTYFATNGFTYGSSHQNWNKLKSFCEKNNMIFIPSVGPGYIDTSIRPWNTQNTRNRINGKYYEV GLSAALQTQPSLISITSFNEWHEGTQIEKAVPKRTANTVYLDYRPHKPSLYLEITRKWSEKYSK ERMTYALDQQLPAS hide sequence

RefSeq Acc Id:

ENSRNOP00000011576 ⟸ ENSRNOT00000011576

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5GF25-F1-model_v2	AlphaFold	Q5GF25	1-462	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13693607

Promoter ID:

EPDNEW_R4132

Type:

initiation region

Name:

Manea_1

Description:

mannosidase, endo-alpha

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	5	40,866,965 - 40,867,025	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:620327	AgrOrtholog
BioCyc Gene	G2FUF-41773	BioCyc
BioCyc Pathway	PWY-7919 [protein N-glycosylation processing phase (plants and animals)]	BioCyc
Ensembl Genes	ENSRNOG00000008626	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein	ENSRNOP00000011576	ENTREZGENE
	ENSRNOP00000011576.4	UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000011576	ENTREZGENE
	ENSRNOT00000011576.7	UniProtKB/Swiss-Prot
Gene3D-CATH	Glycosidases	UniProtKB/Swiss-Prot
InterPro	Glyco_Hydrolase_99	UniProtKB/Swiss-Prot
KEGG Report	rno:140808	UniProtKB/Swiss-Prot
NCBI Gene	140808	ENTREZGENE
PANTHER	GLYCOPROTEIN ENDO-ALPHA-1,2-MANNOSIDASE	UniProtKB/Swiss-Prot
	PTHR13572	UniProtKB/Swiss-Prot
Pfam	Glyco_hydro_99	UniProtKB/Swiss-Prot
PhenoGen	Manea	PhenoGen
UniProt	MANEA_RAT	UniProtKB/Swiss-Prot
	O35390	ENTREZGENE
	Q5GF25	ENTREZGENE
UniProt Secondary	O35390	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2005-01-20	Manea	mannosidase, endo-alpha	Enman	endo-alpha-mannosidase	Symbol and Name updated	1299863	APPROVED
2002-08-07	Enman	endo-alpha-mannosidase			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_expression	expressed in all tissues	632807
gene_protein	451 amino acids; 52 kDa	632807

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD